<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:52:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577845" ref_strand="+" ref_description="SGN-E577845 [LE08AD04]">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="10242" stop="11342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10542" g_stop="11042" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E577845" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10542" e_stop="11042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTTATTTAAATTAAAACTTGATAG-AAAACATCTTCAAAGGCTACCCAGATGCTCGACGAGGTCTGGATGAAGTCGAGGTCCAGTTGCTAACGTTGATCTTTGCTTCCTTGCTTCCACTACGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCATCTTCTTTGGTTAGTGACAACCCCTTCAAGTCGTCTGAGATCTCATCAATAATGCTCCCCATGAAACCTGCTGATCAAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAAAGGATAGTAGTACCCAGCTCTAGGTGGTTTCCAATCGAGCCATTCTTAGGTAGTGTACTTATATCTCAAGCCAAAAGTGGTGGAATGTCGAACAGGTTGTATAGGTTCAATTATCCCTTGCAATTCAACCCCTGAACCTTTCCCAAGCTCAAAACCAAACCAAACCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGTAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="34763" stop="35592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35062" g_stop="35292" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35062" e_stop="35292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAATTTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTAACGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAA----ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="34772" stop="35760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35072" g_stop="35453" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35072" e_stop="35453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAATTTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTAACGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACTTTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTCCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAATTATTGTAAGAATAACT</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAA----ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="34832" stop="35736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35130" g_stop="35457" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35130" e_stop="35457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTAACGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACTTTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTCCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAATTATTGTAAGAATAACTGTTA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549242" ref_strand="+" ref_description="SGN-E549242 [TUS-68-J20](-)">
      <seq>ccattaccatcctgttgcaagacaaagaagttgaagggcttcaggttctcaaagatgatcaatggttcagagtgcctgttgtcccatatggtttactcatcaatgttggagatcaagttgaggtaatgagcaatggcatctttaaaagcccggtgcacagggtggtgacgaatgcagaacgagaaagaaatagccttgctgtcttcattatgccagatgtacatgttgggattggaccagtagataagcttatcaacgaggaaaggccgagagggtacaaggacattaagaattatgttgctctcttcttcctaagctatcagcaggggaaaataccaatagaagcagcaaagataagccaagaatttcattagctgatgttggttccttcttttcctctatttgtatgttcactagtcgtggttgcctgtgctgcgcacgagcccaacactaagatctggacatgctctaagaagggtaagctcttgaatataagcaagacaacggattgatctacaacctattgttattcatttacgaaatatactaaatgcataatttgtaccaaaaataggagtaaggtgcgcgtacacctaaccttcctaaaccttacttgtgagactaaactgattatattattgctgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="35894" stop="37441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36194" g_stop="36315" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36316" i_stop="36615" i_length="300">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36616" g_stop="37141" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="648" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E549242" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36194" e_stop="36315"/>
          <exon e_start="36616" e_stop="37141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAGGTAAGTATAAACTAAATAATGTTGAAGGACTTGAAATGCATTGGAGTTATTTTGACTGATAATACGTCTTTTGGTAAGATGCGATTCTTTTATGAAGAGATGCAAGGGGATATCTACTCTGAAATCAGCACCTTCAATAGCGTGCCTCGAACTTATTTTTCCTATCCAAAACTCTTTTTCTTCTTCAATCATTAATTGTTGCGACTTGAATTGGTTGTTGATATGATTAGATGTTCTTCTTTAGCATCACCATGTTGTACAAACTAGTGAAGTTCTCAGAATTATTATTCCTTGCTGCAGGTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATATGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</genome_strand>
        <mrna_strand>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAG............................................................................................................................................................................................................................................................................................................GTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGATAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCTAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGTAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATTTGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232644" ref_strand="+" ref_description="SGN-E232644 [cLEL-5-D6](-)">
      <seq>aagaaatagccttgctgtcttcattatgccagatgtacatgttgggattggaccagtagagaagcttatcaacgaggaaaggccgagagggtacaaggacattaagaattatgttgctctcttcttccaaagctatcagcaggggaaaataccaatagaagcagcaaagataagccaagaatttcattagctgatgttggttccttcttttcctctatttgtatgttcactagtcgtggttgcctgtgctgcgcacgagcccaacactaagatctggacatgctctaagaagggcaagctcttgaatataagcaagacaacggattgatctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="36378" stop="58515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36678" g_stop="37016" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37017" i_stop="37067" i_length="51">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37068" g_stop="37074" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="346" r_length="7" r_score="0.429"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37075" i_stop="37248" i_length="174">
            <donor d_prob="0.208" d_score="0.00"/>
            <acceptor a_prob="0.106" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37249" g_stop="37255" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="353" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E232644" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36678" e_stop="37016"/>
          <exon e_start="37068" e_stop="37074"/>
          <exon e_start="37249" e_stop="37255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATATGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCCGAAAGAACAGAATAATTCTCTAAGTAGAAGAAGGAAGAAACAAATAACTGCTAACGCGCGTACATGAACAGTTCATTTCTTTGAGTGTTTGTTAATAATTCAAATAGAACAAAA</genome_strand>
        <mrna_strand>AAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTAAAAAAAA...................................................AAAAAAA..............................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205976" ref_strand="+" ref_description="SGN-E205976 [cLEC-20-G22]">
      <seq>ttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgtagggttgagtgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="40329" stop="42248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40636" g_stop="40906" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="304" r_length="271" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40907" i_stop="41700" i_length="794">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41701" g_stop="41948" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="552" r_length="248" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E205976" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40636" e_stop="40906"/>
          <exon e_start="41701" e_stop="41948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGTAGGGGTAGACATTCGGTTTTTCGGTTCGGTTCGGTTTTTTTTTCGGTTTTCGGTTTTTGTAAATTGCGTACCGAATACCGAACCGAAATATTTCGATTCGGTTCGGTTTTTGTTAATTCGGTTCGGTTTTTATTAATTCGGCTCGGTTTTTTAATGGGCCTGTTTAGTGGGCTTTTTAAAATTTTAAACTTTACAATTTTTTCAATTTTTTGTTTCATACTTTCATTTTTCAACTTAATGGCTGCTGCTGAGTGCTGTCGCGGCTGGCGGCTGGTTGCTGCTATTTGCGGCTGGCGGGCGGCGGCTGGTTGCTGCTGTGCTGCTGGCTGCGGCTGGCTGCTGCTTCCCTTGTTGTGCTGCTGGCGGTGCTTCAGTGAAGACAAGAATGGTTGGAGCTGAAGAGTGATTGGAGTAGAAGAGGAAGAGGAGAAAAGAAGAGGAAGAAGATGAGGAGTGAATTGAAAGGAAAAAAAATCTGGTAGAAAGAGAAAGAGTCAAAGTAGGGTATTAGGGTTTTACTTTTTTTTAAAAAAAAATATTTAATATTAATAATTATTAATTAATATAATATAATTTTTAAATTATTAAATTATAATATAATATTTTGGTTTAAATCGAAATACCGAATTCCAAAGTAATATGTACCGAAAACCGAATCGAAATACCAAAAAATACAAAAAATTAAACCGAATACCGAACCGAAAACCGAAATACCGAAACCAAAATTCTAAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTTTCGGTGTTTATGCCCACCCCTAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGCAAG</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712465" ref_strand="+" ref_description="SGN-E712465 [FB04DG04]">
      <seq>gtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaattcagccctaacagccaacttcaaattgtgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgatagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgtttttgctcctttaattctctagatttggtgcaattttattttgttgttgctcgttgtttggcacttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggtcccgtggttttttactcttcacatcgaaaggtttttcncgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggggccgggacccctttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="90814" stop="20774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90512" g_stop="89979" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="549" r_length="535" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89978" i_stop="89466" i_length="513">
            <donor d_prob="0.757" d_score="0.92"/>
            <acceptor a_prob="0.647" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89465" g_stop="89453" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="562" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89452" i_stop="87276" i_length="2177">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87275" g_stop="87229" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="609" r_length="47" r_score="0.468"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87228" i_stop="85834" i_length="1395">
            <donor d_prob="0.990" d_score="0.47"/>
            <acceptor a_prob="0.655" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85833" g_stop="85817" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="626" r_length="17" r_score="0.471"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E712465" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90512" e_stop="89979"/>
          <exon e_start="89465" e_stop="89453"/>
          <exon e_start="87275" e_stop="87229"/>
          <exon e_start="85833" e_stop="85817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGGTTATGGACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAATCCATTTTT-CCCATAAGCCCATTCTTATGAGGCAAATATAATCCTATTTA-GGTCTTATTTTCAGATATA-AAAAGAG-TTTTTCAGCAGCCAAAAAGAAAAAAAAAGAGCAGTTTTTCGCAGTAAAAAATTCAGCCCTAACAACCAACTTCAAATTGTGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGA-TTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGAAAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGAAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTGTTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGATTTATTATTGCTTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCTTGTCAGGCATTCTTTGTTAGTGCCTTGTCTTTCCCAACATCAGCTTCAGGTCAAGAAGGTTTACTTCAGTGATTCGTTGACTTCGTTCCACATACTACACCACGCCATTGATATAAAGGAACAGACACATTGCATGTAATCAAAGAATCAAAGGGATCAAGCATTTCATTCTTGATAGCAAAGAGTGCTTCAATATCTGTCATATTATCTGATTTTGAGGAGGGACTAAGTGTGAAGAGAAATAGGAGAAGAAAGATCTTGTCAAAATAATAGGCCATGACTAAGTACTGCTTTATTTTTTACTGAATACAACTCCTACAATGTGTATATATATATATATATATATATAGGTAAGAGAATAAGTGAACCTCTTCTGCATACTCTAAGATTTGATGGTTATATGGGCTTTATATCGATATCTCAAAGTCAGTAACCGGCAAAAATTCCACATTGGTGGTTAATGAGATGGGCTGACCTAGGCTTGAAGCTAACTTTTGGGGTGTGACCGTGTGAGTTAGACTCAAGACCTAATTTAACATCGTATCAGAGTAGCGCCTATATCACAAGATGTTGGGGACCCAAAAAAAATTAAAATTGCTCATGCACCAGACGCTAAGCACTGAGCATGAATTAGGGTATTAAAAAATGACAAAAGTTTCACATTATTAGTTAATAAATTGGGTGAACTCCTTATAAGGCTTAGACAATCTTTTCCCCTTTGAACTAACTTTTGGGGTGTGAGTTAGGTATAAGACCTTATTTAACAAAAACCCATTGCAATATCTAAGACTTAAAAGACCGAATCTTGTTACTCTTTTGATTTAAAATCAGCAACAGACCGTTGACCTAGTGTTGTATACACCTTAATCAAAATGATTTCGGGTAGTATAGCATCTGCAATAATAGTCAACAATTTTTTGGGTCTTTACACCTTTCTCGTGTCACCTCCTATGGTGAACAAGATTAGTGAAGTAGCCTTTCTTACTGGACAACCGTTGGTTATAGTGAAATTTAACAATAATTTCTTAGATCATCTACAACTCACCTCTATTTTAGGCCTCTTTTGTTTGCAATAATAGAGGTCTGAATCTTAATCATTCAGATTCAGCCTATTAAGTACATTTAATTTTTATGTCTGAATCTGAATGATTCAGATTCACCCCATTAAGTTTATTTATTTTATTTTTAAAAAAAACCTCTCAATGGGTTTGAAGAGGTCTGTACGAATCAGATCTGTAGGAGACTCTTAACAACATTCAGACTCATTTGATAAGTTATCAAATAATAAATCATCGCTTTTCTGCTAACTGAAAACTCTCTTTCTTACTTTTATCAAACAAACACCAATTTGTTTCCAACTGATAAGTTTTCATAAATCCTTTCAATTACTTTCTTTTACTTCTCTATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGAAGTTTAAGAAAAAAAAGAAAGACTTTTTAATCTTGTGTTTCTAAATTAAAGTTATATCAAATGTACCAAAATACTCTTTAATCTTGTAGTCTTAAACATGCCACGTGGAAAGTTAAAGTTTAAGTGTTGCCAAAAAAAGGAAAAGAGTCATTCTTTTTAAAAAGGAAAGGAGTCATTCTTTTTGGAACAAACAAAAAAGGAAATAGGGTCATTCTTATTTTAAACGGCGGGAGTATATTAATAATTTTCTTGTATTGATGTGTGTCAAGAACATAAGTTGCAATAATATTTTTGGTGTATTGTTGTTTATCAAAGTTTTTGAATGATAAAATAGTACTCCAAGTCATGATTATGAAAACTTTTAAAACTTTTTTTTAATCAAAAGTGATATATTTTATTGAAATGAAAATTTTATAATATTTTATTAATATAATGTTCAATTTCACTTTTACACTCAGATATTGAAAACAAATAACATTAATTATTTAGTGTTCAGATTTAGAGACCATATCTAAATATTCAGATGTCTATTCAAATCGAAACACTCATATCTTAATGCAAATCTTAATATTAAGATGGATATTCAGATTCAGACCTCTCAATCTTAATGAAAACAAATGAGGTCTTAGTCTTTATTCTCTATATTTGAAATGTAAAATAGAGAATGAGTTCTTCAACCATTCTCTAATTCACTTTCTATTCTCTGTTTATACATAGGTGAATTGTAGTTCACCAAATATGGAGAACTATTATTCATACTCTTTGTTTCACTTTTGATTATTTTATTATTATTTTATATTAAATGATACTTATAATTAACATATTATAAATCATATAAGACCATTAATTTAATCTCTAATATTCGTATATTTTAGTGTATTTAACATTTTATACTCCCTCTGCCCATTTATATTTGTCATGTTGTACTTTTTGAAAGTCAATTTGACTAATAATTAAAGTTAAATTAGATTACGTTAATTCGATATTTAAAAAAAATTATATATTCAAAAACTATATGAAAAATACTATAAATTACAATTTTTTGCATATTAATATGATGAAAATATACATTGTAAATTGTTCATCAAAGTTCTTGTAGTTTGACTCTAAAAAGGAGACCATGACAATTAATCGTGGATGGAGGGAGTAAGATATATTATTTAATCTATGCTACTTTCATTCCAAATTAATAAGATTTCAATTCTTTTTCAGTTTTTGTCATTTTAAACTTATAATCTAAAAGTATTAATAGCTTTCACTATGAGAATATACAAAATTTGAGTGATAAGATGAAAATTTTAATTTAAAAATACAATCTATAATATAAAAGTAGTTTATATTGGGGGTGGCAATAAGGCATGTTGAGTTAAATTTGAGTTAATCAAAATAAATCAAGATCCAACCCAACCAAATTTGTTTAGGCCAAAATCCTGTTAGGTCAAAACAGATTAGGTAATATATTTGTTAGGGTCATAATCCAACCTACACAATTTTTATTAAGTTCTAATAAATTTATTTGTTATTTATAAGCTTTTATTACCCGATAAAGTTATTTTTCTTTATTCTAATCATATATAACATATAAGTTTAAAAAGAAGTTTTTAATAATATTTTGACTTGATTTTTCAAATATCAATTTGGATTATATATCAATTTAATATTTAATGGGCTAAAATGAATTGAGTTGAGATGGGTTGAATTAATAAATGAGTAGATCAATAACCAACCCATACCTAAATGAGTAGATCAATAACCAACATATACATATATAAATATATATATATGTATGTGCAATAAAAGTAGAAGACTATGTAACCTTCATATACGAAGGATCTATGTATACTCGATATGAATATATATTATGTGTATGTAGAGGTCTATGTAAACCTCGAAGTAGTGATAAGGAAAGTTTTAAATTTTTCCGGATTTTTCAACCTATGAATGTAATGACATGAAACTAAGATGCTAGTCTTAGTCTTTCGAAAGAACGCCGACGCCGGTTATGTCTAGGGGGTAAACCCGGATGTGACAGTTTACACATACAATTGAGGATATATTTTTTCACACGTGTTTAATATTTAGTAGTTAAGAGTTATAATTTTTTGTTTCTTTTCAAGTATGAATTATAGTTGAGAGAGCAACTATTTTGTTTATTGTGAAATCTCAAACTTTTAAGTTAAGATTTAAAACCACCCTATATGTATAGATAGATCTAAATCCAATGAAATTAATTATTTATATTGTTAAGTTCAATTTTTGAGTGTGTGAGTGGATTAGATACGCACTAAAGTCATACGGAACCCTAGAACAAAGTTGAGTTCAAAGTGACATTAGCGATTGGGTTTCAATATAAATTTTTACTTGGTTCAACATCAAACGAAAACCTCTCCTATTAAGAGTTATGTATTCACAAACCTATCAAATACAAGGTCTTCCAGTTTTCTTTCCAACACCACCGACTATTCATTAATCTGAGTCTAAAGAAGAAAGTTGTAAGTGTTTAGCAAAAAGTGTGAATGTTGAAAACTTATTTCACCATAGCAATGAGTGGTTTGCCT</genome_strand>
        <mrna_strand>TGTTGGGTTATGGACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTGTTTTTTCAGCAGCCAAAAAG--AGAGAAAGAG-AGATTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGTGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGATAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGTTTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATTTTATTTTGTTGTTGCTCGTTGTTTGGCACTTG-TTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAAGGTTTTTCNC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGGGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGGACCCCTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="89666" stop="90686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89966" g_stop="90389" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89966" e_stop="90389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTTGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAACAAGTGTCAAACAACGAGCAACAACAAAATAAGATTTCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTTTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCC-AAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTTTTTTTTTCTTTTTGGCTGCTGAAAAACTCT-TTTTATATCT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCT-CTCTTTTTTCTCTCTTTTAGCTGCTGAAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746085" ref_strand="+" ref_description="SGN-E746085 [GI|47105317]">
      <seq>ggaagagagatagacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcttttctgaacggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100555" stop="91769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100256" g_stop="100100" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="267" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="325" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="589" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="727" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="779" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="859" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="919" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="920" r_stop="1000" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92297" g_stop="92060" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1001" r_stop="1238" r_length="238" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E746085" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100256" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAGAAGTTCCACAT</genome_strand>
        <mrna_strand>GGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706261" ref_strand="+" ref_description="SGN-E706261 [FA29BH06]">
      <seq>cggatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcangaaagaggcacaaaacatgcaacctgtatcagttgattagtgtttcattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcttttctgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="95176" stop="20791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95005" g_stop="94999" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.714"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="65" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="329" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="467" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="519" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="599" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="659" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="740" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92297" g_stop="92061" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="977" r_length="237" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E706261" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>977</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95005" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAGAAGTTCCACA</genome_strand>
        <mrna_strand>CGGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCANGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTTCATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255484" ref_strand="+" ref_description="SGN-E255484 [cLEG-30-I18]">
      <seq>ttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcttttctgaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93733" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93433" g_stop="93396" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="90" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="170" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="230" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="311" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92070" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="539" r_length="228" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E255484" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93433" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAGA</genome_strand>
        <mrna_strand>TTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422016" ref_strand="-" ref_description="SGN-E422016 [STM-33-N24]">
      <seq>gatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatccttttgaaaaggtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93365" stop="91774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93065" g_stop="93027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92297" g_stop="92071" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="407" r_length="227" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E422016" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422016" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93065" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAG</genome_strand>
        <mrna_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTGAAAAGGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407290" ref_strand="+" ref_description="SGN-E407290 [PPI-6-J15]">
      <seq>gatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatcctttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93365" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93065" g_stop="93027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92297" g_stop="92071" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="407" r_length="227" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E407290" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93065" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAG</genome_strand>
        <mrna_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422015" ref_strand="+" ref_description="SGN-E422015 [STM-33-N24]">
      <seq>gatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatcctttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93365" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93065" g_stop="93027" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="99" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="180" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92297" g_stop="92071" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="407" r_length="227" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E422015" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E422015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93065" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAG</genome_strand>
        <mrna_strand>GATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619484" ref_strand="-" ref_description="SGN-E619484 [70174]">
      <seq>atttatgctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagagggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatggaattgagccaactgaaagcaatgtattgaatggtggaaaaccaggtcctcacgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatcctttttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="94959" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94659" g_stop="94443" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="355" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="407" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="487" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="547" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="628" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92297" g_stop="92072" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="854" r_length="226" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E619484" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94659" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGA-GGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAA</genome_strand>
        <mrna_strand>ATTTAT-GCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623825" ref_strand="-" ref_description="SGN-E623825 [88969]">
      <seq>ccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatggaattgagccaactgaaagcaatgtattgaatggtggaaaaccaggtcctcacgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatcctttttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="94885" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94585" g_stop="94443" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="281" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="333" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="413" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="473" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="554" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92297" g_stop="92072" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="780" r_length="226" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E623825" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623825" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94585" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAA</genome_strand>
        <mrna_strand>CCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421079" ref_strand="-" ref_description="SGN-E421079 [STM-32-A22]">
      <seq>caagatatatggaattgagccaactgaaagcaatgtattgaatggtggaaaaccaggtcctcacgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagccgcacttagactcgccaacagaccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaagaaaaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatccttttgnaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93603" stop="91779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93399" g_stop="93396" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="56" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="136" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="196" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="277" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92072" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="503" r_length="226" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E421079" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421079" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93399" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAA</genome_strand>
        <mrna_strand>CAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAGAAAAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTTGNAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261510" ref_strand="+" ref_description="SGN-E261510 [cLEG-57-A20]">
      <seq>gaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcnttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93800" stop="91781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93500" g_stop="93396" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="157" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="237" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="297" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92081" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="596" r_length="218" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E261510" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93500" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATC-TTTTCTG</genome_strand>
        <mrna_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCNTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258473" ref_strand="+" ref_description="SGN-E258473 [cLEG-47-B16]">
      <seq>gaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93800" stop="91781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93500" g_stop="93396" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="157" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="237" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="297" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92081" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="595" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E258473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93500" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTG</genome_strand>
        <mrna_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261440" ref_strand="+" ref_description="SGN-E261440 [cLEG-57-D6]">
      <seq>gaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatctttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93800" stop="91782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93500" g_stop="93396" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="157" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="237" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="297" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="378" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92082" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="595" r_length="217" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E261440" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93500" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATC-TTTTCT</genome_strand>
        <mrna_strand>GAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624515" ref_strand="+" ref_description="SGN-E624515 [GI|11559259]">
      <seq>gacaaattgtagtgagtgatttacaacttctacaatggcgtccttactaaggagaaggttttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtatcttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgataaacgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgaccactgatccaactaaaggaatgggaggaactattaagaaagcgtatgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagccaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatggaattgagccaactgaaagcaatgtattgaatggtggaaacccaggtcctcacgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcgagcgaagaatcggtaaacatggctagggaattggcgttgaaggaaggccttatggttggtatatcatcaggagcaaatacagtagctgcacttagactcgccaacaggccagaaaacaaaggaaaactcatagtgacaatacatccaagttttggagagaggtacttgtcatctgttctgtatgaagatatcaggaaagaggcacagaatatgcaacctgtatcagttgattaatggtctattattatagtgatagctgtagtgaaactagtacaaaaagaaataatatatgtactacattttctgaaataatgtttatgctttaaataataatgaaaatttatcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100544" stop="91784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100215" g_stop="100100" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="148" r_length="116" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="258" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="316" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="580" r_length="264" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="718" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="770" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="850" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="910" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="991" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92297" g_stop="92083" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="992" r_stop="1206" r_length="215" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E624515" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1174</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100215" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTC</genome_strand>
        <mrna_strand>CAATGGCGTCCTTACTAAGGAGAAGGTTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTATCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATAAACGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGACCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCGTATGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGAATGGTGGAAACCCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGCGAAGAATCGGTAAACATGGCTAGGGAATTGGCGTTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACAGTAGCTGCACTTAGACTCGCCAACAGGCCAGAAAACAAAGGAAAACTCATAGTG..............................................................................ACAATACATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATATCAGGAAAGAGGCACAGAATATGCAACCTGTATCAGTTGATTAATGGTCTATTATTATAGTGATAGCTGTAGTGAAACTAGTACAAAAAGAAATAATATATGTACTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGAAAATTTATCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259769" ref_strand="+" ref_description="SGN-E259769 [cLEG-51-A23]">
      <seq>ttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttctgaaataatgtttatgctttaaataataatggaaagtaatcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93733" stop="91783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93433" g_stop="93396" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="90" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="170" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="230" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="311" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92083" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="526" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E259769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93433" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTC</genome_strand>
        <mrna_strand>TTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254603" ref_strand="+" ref_description="SGN-E254603 [cLEG-29-A5]">
      <seq>ataccttcaaggtaatgttgaccatctttgtcatgggaataggaagtggagggcaccaggggctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaacatctcatgaaagaggcacaaaacatgcaacctgtctcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaatgtatgtgctacattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93796" stop="91828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93498" g_stop="93396" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="158" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="238" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="298" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="379" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92128" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="549" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E254603" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93498" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACTCAAGGTAATGTTGA-CATCTTTGTCATGGGAATAGGAAGTGGA-GGCA-CAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCT</genome_strand>
        <mrna_strand>ATACCTTCAAGGTAATGTTGACCATCTTTGTCATGGGAATAGGAAGTGGAGGGCACCAGGGGCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAACATCTCATGAAAGAGGCACAAAACATGCAACCTGTCTCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254494" ref_strand="+" ref_description="SGN-E254494 [cLEG-29-G15]">
      <seq>gaagaatacctcaaggtaatgttgaccatctttgtcatgggaataggaggtggggagacagtctctggtgttggaccaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcangaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaattattatagtgatagtactagtgaaactagtacaagaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93800" stop="91846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93500" g_stop="93396" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="161" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="241" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="301" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92146" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="534" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E254494" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93500" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAG-ATAC-TCAAGGTAATGTTGAC-ATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGA-CAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAAT</genome_strand>
        <mrna_strand>GAAGAATACCTCAAGGTAATGTTGACCATCTTTGTCATGGGAATAGGAGGTGGGGAGACAGTCTCTGGTGTTGGACCAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCANGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254512" ref_strand="+" ref_description="SGN-E254512 [cLEG-29-C4]">
      <seq>gctggatcccccgggctgcacgggaagatactcaaagtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgtcggacaatatctgagatcgaaaaatcctaatgtcaagacatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccacacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggcacttgtcatctgctctgtatgaagatctcatgaaagaggcacaaaacatgcaacctgtatcagttgattagtgttcaatgattatagtgatagtactagtgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="93802" stop="91865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93502" g_stop="93396" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="128" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="180" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="260" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="320" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="401" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92297" g_stop="92165" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="534" r_length="133" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E254512" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93502" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAAC</genome_strand>
        <mrna_strand>GGGAAGATACTCAAAGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTCGGACAATATCTGAGATCGAAAAATCCTAATGTCAAG................................................................................................ACATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCACACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGCACTTGTCATCTGCTCTGTATGAAGATCTCATGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATGATTATAGTGATAGTACTAGTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311651" ref_strand="+" ref_description="SGN-E311651 [cLEZ-9-B19]">
      <seq>aactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccagaaaataaaggaaaactcatagtgacaattcatccaagttttggagagaggtacttgtcatctgttctgtatgaagatctcaggaaagaggcacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="94827" stop="91920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94527" g_stop="94443" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="223" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="275" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="355" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92456" g_stop="92376" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="496" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92297" g_stop="92220" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="574" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E311651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94527" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92376"/>
          <exon e_start="92297" e_stop="92220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTGGTATGAATATTTATTAGTTGACTCTCAATTTTGTTATGTTAATTAGTTGTGTTGAATTTTTTGGTTTTGGAATTTCAGACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATG</genome_strand>
        <mrna_strand>AACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG..............................................................................ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234206" ref_strand="+" ref_description="SGN-E234206 [cLEL-8-I24](-)">
      <seq>aagcttacgatctttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcaagtgaagaatcggtaaacatggctagggagttggcattgaaggaaggccttatggttggtatatcatcaggagcaaatactgtagccgcacttagactcgccaacagaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="94816" stop="92085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94516" g_stop="94443" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="211" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="263" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="343" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92456" g_stop="92384" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="476" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E234206" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94516" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
          <exon e_start="92456" e_stop="92384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATGGTAAAATTTCGAACAGATGGTTTTTCATATCTATCACTCTCTCATATCATTGATCTATTTTCCATTACTAAGTGGCATTATGTGAATGGTACAAAAAGATAAGCTTATATATATTCGACCCCAACTTTTTTTTAATCATACAACAAACATTTTGTTGTATAGGTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAAC</genome_strand>
        <mrna_strand>AAGCTTACGATC-TTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG..................................................................................................................................................................GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590622" ref_strand="+" ref_description="SGN-E590622 [44222]">
      <seq>ccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctggaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatggaattgagccaactgaaagcaatgtattgcaatggtggaaaaccaggtcctcacgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaagttctgatggtttcgaggcgaagaatcggtaaacatgggctagggagtttgggcattgaaggaagggtctttatgggttggggtatatcactcaggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100425" stop="92326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100125" g_stop="100100" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="136" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="194" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="458" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="597" r_length="139" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="650" r_length="53" r_score="0.923"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="730" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="92678" g_stop="92619" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="794" r_length="64" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E590622" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100125" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCT-GAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTG-AATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAGGTTTC-AAGTGAAGAATCGGTAAACAT-GGCTAGGGAG-TT-GGCATTGAAGGAAGGCCTTATG</genome_strand>
        <mrna_strand>CCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGCAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GTTTCGAGGCGAAGAATCGGTAAACATGGGCTAGGGAGTTTGGGCATTGAAGGAAGGGTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407240" ref_strand="+" ref_description="SGN-E407240 [PPI-6-O16]">
      <seq>ggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatggaattgagccaactgaaagcaatgtattgaatggtggaaaaccaggtcctcacgaaataactggcaatggggnttggattcaagccggatatccttgacatggatgtaatggnaagaaagttctgatgggtttcgagcgaagaatcggtaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="95357" stop="92352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95057" g_stop="94999" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="117" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="381" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="519" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="571" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93106" g_stop="93027" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="654" r_length="83" r_score="0.913"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348">
            <donor d_prob="0.940" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92678" g_stop="92652" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="682" r_length="28" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E407240" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95057" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93027"/>
          <exon e_start="92678" e_stop="92652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGG-TTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGG-AAG-AAGTTCTGATGGTATGCTGAGTTCTAAACTTCATTTCTCTTGCAGAACACACGAAAATATTGACCTCCGGATGTTGGTCTTTAAATTTCACAATTATAATATGCATTATCCTGGAACAGAACCCGTTTTTAATTACCTTGTTAGGATAAATTTCAACCACTTAACTATTAGTGTTTGTTTCTTGCATAGCACAAGAACTATGTAATTGCAGAGTTTTGTTTAATTAGAACTACAACCAGAAGCGCACGGAGTGTATTATCTCTATGTTCAACTGAATCCAATATTTTTGATGCAGAACATTGACTATAATTAGTCATTTTTGGCAATTTATACATGAATTATGCTTATACTGTTTGCAG-GTTTCAAGTGAAGAATCGGTAAACATG</genome_strand>
        <mrna_strand>GGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATTGAGCCAACTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCACGAAATAACTGGCAATGGGGNTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGNAAGAAAGTTCTGATG............................................................................................................................................................................................................................................................................................................................................................GGTTTCGAGCGAAGAATCGGTAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553842" ref_strand="+" ref_description="SGN-E553842 [cTSC-2-G19]">
      <seq>agacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100545" stop="92735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100245" g_stop="100100" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="256" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="314" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="578" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="716" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="768" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93035" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="840" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E553842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100245" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAG</genome_strand>
        <mrna_strand>AGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E555329" ref_strand="+" ref_description="SGN-E555329 [cTSC-1-L13]">
      <seq>taattttccattataaaaggggtattttatcttttgaaatttgaagagagatagacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttgacatggatgtaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100597" stop="92741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100297" g_stop="100100" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="308" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="366" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="630" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="768" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="820" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93041" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="886" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E555329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100297" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGG</genome_strand>
        <mrna_strand>TAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724827" ref_strand="+" ref_description="SGN-E724827 [FC25BB03]">
      <seq>tggcggccaatcggccgaattggaagagagatagacctttacgggcttcaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcaaaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacaatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaagcaatgtattgaatggtggaaaaccaggtcctcatgaaataactggcaatggggttggattcaagccggatatccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100560" stop="92755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100251" g_stop="100100" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="177" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="287" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="345" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="609" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="747" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93248" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="799" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93106" g_stop="93055" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="851" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E724827" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100251" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93248"/>
          <exon e_start="93106" e_stop="93055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAGGTAATTAACTTCACTTCCTATCATAACTATAGAACTAAAAATATTGTTGCAAATAACATGCCTCTTTCTTTTTTTCCATTTGTTGTGGCATATGAGTAAATTTGTTCTACATAGATTTCTGAACATCGATACTGTATACAGGTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGA</genome_strand>
        <mrna_strand>AGAGATAGACCTTTACGGGCTTC-AATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAAAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG.............................................................................................................................................GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316325" ref_strand="+" ref_description="SGN-E316325 [cTOA-25-G19]">
      <seq>agacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagtggaggcacagtctctggtgttggacnatatctgaaatcgaaaaatcctaatgtcaagatatatggaatcgagccagctgaaaagcatgtattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100545" stop="92963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100245" g_stop="100100" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="256" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="314" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="578" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="716" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93263" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="753" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E316325" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100245" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGA</genome_strand>
        <mrna_strand>AGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACNATATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGAATCGAGCCAGCTGAAAAGCATGTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401355" ref_strand="+" ref_description="SGN-E401355 [PPC-3-L22]">
      <seq>caacttctaacaaatttcatcaatggcgtccttactaaggagaagattttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtaccttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactanaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaagcggaggcacagtctctggtgttggacagtatctgaaatcgaaaaatcctaatgtcaagatatatgggaattgagccactgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100532" stop="93090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100236" g_stop="100100" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="246" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="304" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="568" r_length="264" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="706" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93274" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="732" r_length="26" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E401355" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100236" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATAT-GGAATCGAGCCAGCTGAAAG</genome_strand>
        <mrna_strand>CAA-CTTCTAACAAATTTCATCAATGGCGTCCTTACTAAGGAGAAGATTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTANAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGCGGAGGCACAGTCTCTGGTGTTGGACAGTATCTGAAATCGAAAAATCCTAATGTCAAG................................................................................................ATATATGGGAATTGAGCCA-CTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460524" ref_strand="+" ref_description="SGN-E460524 [cPRO-31-F21]">
      <seq>caacttctaacaaatttcatcaatggcgtccttactaaggagaagattttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtaccttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattttgagactactggccctgaaatttgggaagatactcaaggtaatgttgacatctttgtcatgggaatangaagcggaggcacagtctctgggtgtggacagtatctgaaatcgaaaaatctaatgtcagatatatggaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100532" stop="93090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100236" g_stop="100100" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="246" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="304" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="568" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93396" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="704" r_length="136" r_score="0.928"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93299" g_stop="93286" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="718" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E460524" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100236" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93396"/>
          <exon e_start="93299" e_stop="93286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAGGTATTTTCCTGCCAATCAATTCATTATGTGATTGCAAGCTTAACGTGTAAACAAAATAACATCATCGCTCTTGCATATTTTTTCCTGTCCTGCTAGATATATGGAATCGA</genome_strand>
        <mrna_strand>CAA-CTTCTAACAAATTTCATCAATGGCGTCCTTACTAAGGAGAAGATTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCATTTTGAGACTACTGGCCCTGAAATTTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATANGAAGCGGAGGCACAGTCTCTGGGTGTGGACAGTATCTGAAATCGAAAAAT-CTAATGTC-AG................................................................................................ATATATGGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273750" ref_strand="+" ref_description="SGN-E273750 [cLEN-7-I14]">
      <seq>aaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatgggaataggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100528" stop="93155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100228" g_stop="100100" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="239" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="297" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="561" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93455" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="640" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E273750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100228" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAA</genome_strand>
        <mrna_strand>AAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256750" ref_strand="+" ref_description="SGN-E256750 [cLEG-40-P4]">
      <seq>aaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaagtaatgttgacatctttgtcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100524" stop="93162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="100100" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="557" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93462" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="629" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E256750" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGA</genome_strand>
        <mrna_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAAGTAATGTTGACATCTTTGTCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242039" ref_strand="+" ref_description="SGN-E242039 [cLED-27-J9]">
      <seq>aactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactactggccctgaaatctgggaagatactcaaggtaatgttgacatctttgtcatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="95410" stop="93162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="112" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="170" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="434" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93533" g_stop="93462" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="506" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E242039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGA</genome_strand>
        <mrna_strand>CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256737" ref_strand="+" ref_description="SGN-E256737 [cLEG-40-J20]">
      <seq>aaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100524" stop="93216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="100100" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="557" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93516" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="575" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E256737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTACT</genome_strand>
        <mrna_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256571" ref_strand="+" ref_description="SGN-E256571 [cLEG-38-M16]">
      <seq>aaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatcctgccaatactcaagttcattttgagactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100524" stop="93217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="100100" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="557" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93533" g_stop="93517" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="574" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E256571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="93533" e_stop="93517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTTAGAGTCCCACAGTGGTTAGGGTATTGACCGGTCCTCATAAGCTAGTTTTTGGGGTTTAGTTAGATTCAAGTGTCATGTTTTTCATGGTATTAGAGTAAGGTCCATTTCCAGTGTGAGCTCACGATCTACACTCTAGTTGGGCCTAAGCGTCGTGGTGGTGGTGGTGGTGTTGGTGGGAGTGAGGATGTTAGAGTCCGACATTGGTTGGAGAATGAACTGATGGTCTGCTTATATGGACTTGGACGATCCTACTCTCATAAAGTAGATTTCGGAGTTAAGGCAAGTGTCATATCTTTGTCATTAGCAAATTATCTCGTAGTTGTCCTTGACATCGAAGGAGCTCCAAAGTGGATCTCACTATTTTAGAGATCAGGCTCAAATGCATGCCCTCTACTCTTACACTTTGGTCAGGGTCTACGGTAAGGTAAGCTCCTTCTGAGTCCAGGGCAAGTAAGACATGATTAATGCGATGATGGAGATAGGATTAATTTTCACCAAGGGGATTCAAGAATTTAAATAAGTAAACACATGAGGAAGCCAAAGGGATTCAACACTAGTATATATTATACATCAAAAAAAAGATTTGACTTACCTATGTAGAGTAATTTTTCAATGATTCCCTTCGACAAGGGTTGGTCCCACTATGAATGACCTTAAAGTACAACAAAAATTAGAATAAATATATTTCATAATTAAAGTGGAGGGGCATTTTAAATTCTTTTCCGTTATATCAAAAACAAAAATTCAACATTGACATTGAACACAGGTTCATTTTGAGACTAC</genome_strand>
        <mrna_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTTTGAGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464230" ref_strand="+" ref_description="SGN-E464230 [cPRO-17-I22]">
      <seq>caacttctaacaaatttcatcaatggcgtccttactaaggagaagattttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtaccttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaaacttggagaggagggtgaccatgagagcattctgagctgatttagtgatcactgatcccactaaagggatgggaggaactattaagaaagcttataatcttttggaatctacacctaatgcttatatgcttcaacaattctccaatccagctaatactcaagctcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100532" stop="94137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100236" g_stop="100100" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="246" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="304" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="568" r_length="264" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94442" i_stop="94308" i_length="135">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94307" g_stop="94300" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="576" r_length="8" r_score="0.375"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E464230" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100236" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
          <exon e_start="94307" e_stop="94300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAAGTAAGTGATTTACCATCTTCATTTTGCTCCCTCCCCCACCCCCTCATCTATTACTAGACTTACCATTATCGGAAAATGTCCAAGTTTTGTATTTTATGATATGTTATTCTTCTATGATTATTTCATATTTTTCAGTGTAGGTT</genome_strand>
        <mrna_strand>CAA-CTTCTAACAAATTTCATCAATGGCGTCCTTACTAAGGAGAAGATTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAACTTGGAGAGGAGGGTGACCATGAGAGCATTCTGAGCTGATTTAGTGATCACTGATCCCACTAAAGGGATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCAGCTAATACTCAA.......................................................................................................................................GCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401422" ref_strand="+" ref_description="SGN-E401422 [PPC-4-K11]">
      <seq>ggcatttacaacttctaacaaatttcatcaatggcgtccttactaaggagaagattttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtaccttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttataatcttttggaatctacacctaatggctatatgctttcacaattctccaatccagctaatactcaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100532" stop="94142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100244" g_stop="100100" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="254" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="312" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94443" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="576" r_length="264" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E401422" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100244" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA</genome_strand>
        <mrna_strand>GGCATTTACA-ACTTCTAACAAATTTCATCAATGGCGTCCTTACTAAGGAGAAGATTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTATAATCTTTTGGAATCTACACCTAATGGCTATATGCTTTCACAATTCTCCAATCCAGCTAATACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275324" ref_strand="+" ref_description="SGN-E275324 [cLEN-9-L16]">
      <seq>atttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgcttcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100541" stop="94168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100241" g_stop="100100" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="252" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="310" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94468" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="549" r_length="239" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E275324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100241" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACA</genome_strand>
        <mrna_strand>ATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256120" ref_strand="+" ref_description="SGN-E256120 [cLEG-37-N15]">
      <seq>aaatttcatctatggcgtcgttggtgaggagaagattttggtcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100524" stop="94174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="100100" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94474" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="526" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E256120" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCT</genome_strand>
        <mrna_strand>AAATTTCATCTATGGCGTCGTTGGTGAGGAGAAGATTTTGGTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255453" ref_strand="+" ref_description="SGN-E255453 [cLEG-30-I19]">
      <seq>aaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100524" stop="94175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100224" g_stop="100100" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="293" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94475" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="525" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E255453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100224" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGC</genome_strand>
        <mrna_strand>AAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338488" ref_strand="+" ref_description="SGN-E338488 [cTOE-15-B22]">
      <seq>acatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcctacgatcttttggaatctacacctaatgcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100543" stop="94176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100243" g_stop="100100" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="254" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="312" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94476" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="543" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E338488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100243" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATG</genome_strand>
        <mrna_strand>ACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCCTACGATCTTTTGGAATCTACACCTAATGCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299044" ref_strand="+" ref_description="SGN-E299044 [cLET-42-N10]">
      <seq>atttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100541" stop="94176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100241" g_stop="100100" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="252" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="310" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94476" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="541" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E299044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100241" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATG</genome_strand>
        <mrna_strand>ATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268078" ref_strand="+" ref_description="SGN-E268078 [cLEI-15-J24]">
      <seq>aaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtcaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaatgcttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100528" stop="94176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100228" g_stop="100100" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="239" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="297" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94476" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="528" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E268078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100228" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATG</genome_strand>
        <mrna_strand>AAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTCACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210219" ref_strand="+" ref_description="SGN-E210219 [cLEC-40-J15]">
      <seq>gagaactagtctcgagtttttttttttttttttttaatacaaaaagaaaccaactttctttatatattttcatttaatagagtcacataattgaaagtaaacaaacttaagacgatcacaaaacatagttcaatgttgattttgtagccttggtttagtgataaacacatgacatttggcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="249133" stop="94185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100470" g_stop="100376" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100375" i_stop="97259" i_length="3117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97258" g_stop="97237" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="115" r_length="20" r_score="0.727"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97236" i_stop="96944" i_length="293">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.676" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96943" g_stop="96936" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="123" r_length="8" r_score="0.625"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96935" i_stop="95521" i_length="1415">
            <donor d_prob="0.724" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95520" g_stop="95499" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="143" r_length="20" r_score="0.773"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95498" i_stop="95063" i_length="436">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95062" g_stop="94999" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="205" r_length="62" r_score="0.719"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="0.78"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="263" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94706" g_stop="94485" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="485" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E210219" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100470" e_stop="100376"/>
          <exon e_start="97258" e_stop="97237"/>
          <exon e_start="96943" e_stop="96936"/>
          <exon e_start="95520" e_stop="95499"/>
          <exon e_start="95062" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAAT</genome_strand>
        <mrna_strand>GAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTTAATACAAAAAGAAACCAACTTTCTTTATATATTTTCATTTAATAGAGTCACATAATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-AAACAAACTTAA-GACGA.....................................................................................................................................................................................................................................................................................................TCACAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-TAGTTCAATGTT-GATTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTTGGTT-TAGTGAT-AAACACATGACATTTGGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261569" ref_strand="+" ref_description="SGN-E261569 [cLEG-57-H3]">
      <seq>catcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgtgaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactgatccaactaaaggaatgggaggaactattaagaaagcttacgatcttttggaatctacacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100518" stop="94185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100218" g_stop="100100" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="229" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="288" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94485" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="510" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E261569" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100218" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTG-GAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAAT</genome_strand>
        <mrna_strand>CATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGTGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570579" ref_strand="+" ref_description="SGN-E570579 [15185]">
      <seq>caacttctaacaaatttcatcaatggcgtccttactaaggagaagattttattcgagtgaatcatcatttgctcagaggctaagagatctgccaaagtaccttcctggtaccaacatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatcttaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctgggaaaacaacactaatcgagccaacgtcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcctatacaagcttggagaggagggtgaccatgagagcattcggagctgatttagtgatcactgatccaacctaaaggaatggggaggaactattaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100532" stop="94218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100236" g_stop="100100" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="246" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="304" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94517" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="496" r_length="192" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E570579" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100236" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAA-CTAAAGGAAT-GGGAGGAACTATTAAGA</genome_strand>
        <mrna_strand>CAA-CTTCTAACAAATTTCATCAATGGCGTCCTTACTAAGGAGAAGATTTTATTCGAGTGAATCATCATTTGCTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAACATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTTAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGGAAA..............................................................................................................ACAACACTAATCGAGCCAACGTCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCCTATACAAGCTTGGAGAGGAGGGTGACCATGAGAGCATTCGGAGCTGATTTAGTGATCACTGATCCAACCTAAAGGAATGGGGAGGAACTATTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312794" ref_strand="+" ref_description="SGN-E312794 [cTOA-8-J24]">
      <seq>acaagctcggccaaaaataaatagttattatactaacaaaattctatttttaggtataggaaaaattcatctgtatataccgtaattttccattataaaaggggtattttatcttttgaaatttgaagagagatagacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagcttggagaggagggtaaccatgagagcatttggagctgatttagtgatcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100677" stop="94249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100379" g_stop="100100" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="390" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="448" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94549" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="606" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E312794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100379" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGA</genome_strand>
        <mrna_strand>ACAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291119" ref_strand="+" ref_description="SGN-E291119 [cLET-8-D13]">
      <seq>gacaattattttagagagaaggagagagataacaagctcggccaaaaataaatagttattatactaacaaaattctatttttaggtataggaaaaattcatctgtatataccgtaattttccattataaaaggggtattttatcttttgaaatttgaagagagatagacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcagaaaagaaaggattaatcacccctggaaaaacaacactaatcgagccaacatcagggaatatgggaataagtatggcatttatggctgccatgaaaggctacaaaatgattttgacaatgccatcgtatacaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100677" stop="94300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100410" g_stop="100100" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="421" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="479" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94706" g_stop="94600" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="586" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E291119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100410" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTT</genome_strand>
        <mrna_strand>GACAATTATTTTAGAGAGAAGGAGAGAGATAACAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E241982" ref_strand="+" ref_description="SGN-E241982 [cLED-27-C4]">
      <seq>aactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgttaaacaagaaatgatgcagcctacttctagtatcaaagatagaccaacatttgctatgatcaatgatgcggaaaagaaaggattaatcacccctggaaaaacaacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="95410" stop="94513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="112" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="94817" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="170" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94706" g_stop="94698" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="179" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E241982" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94817"/>
          <exon e_start="94706" e_stop="94698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAAGTAAGTAAATATGCCTCTTTCCTGTACAAAAACCTTAAAAGACAGATAATATGAACGAGATAACGGTTGCATAAGTTTTGTGTCTTATATATTTTATGGATGATATGCAGACAACACTA</genome_strand>
        <mrna_strand>CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAGCCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAACATTTGCTATGATCAATGATGCGGAAAAGAAAGGATTAATCACCCCTGGAAAA..............................................................................................................ACAACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236317" ref_strand="+" ref_description="SGN-E236317 [cLED-20-L17]">
      <seq>gagaaggagagagataacaagcttggccaaaaataaatagttattatactaacaaaattctatttttaggtataggaaaaattcatctgtatataccgtaattttccattataaaaggggtattttatcttttgaaatttgaagagagatagacatttacaggcttcaaataaatttcatcaatggcgtcgttggtgaggagaagattttattcgagtgaagcatcatttgttcagaggctaagagatctgccaaagtaccttcctggtaccaaaatcaaaactcaagtttctcaactcattgggaaaacaccattggtgtatctaaacaaagtgagtgaaggatgtggtgcttatattgctgntaaacaagaaatgatgcaacctacttctagtatcaaagatagaccagcatttgctatgatcaatgatgcaaaaaagaaaggattaatcacccctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="100677" stop="94518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100395" g_stop="100100" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95108" g_stop="94999" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="406" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94874" g_stop="94818" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E236317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100395" e_stop="100100"/>
          <exon e_start="95108" e_stop="94999"/>
          <exon e_start="94874" e_stop="94818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAAGTTAGTAAATTTTACCCTCTATTTCTTCATATTCTCAGTGCTTCGAGCTGTAGATAATTTACTCTTCTAAGATCTGTTATACTCTTTGGTTAAATTTTGTTAATGTTTTTCTAATTTAATGCTGAATTAGCTTTTAATTAATCCAATTTACCTGAATACACCGTTTGAACCCGGTAGCGGAGCCAGAACCCAATAGCGGAGCCACCAGCGATTCATCTGAATCTCGTTCAGAGAAAAATTATATTTAAGTATATATATGTAGTTCTAAGGTTATTTTATGTGATTATATTTTCAAATTTTAAATTTTTTTTATTGAAATTTTTTTTATTCCGCCATTATTAAACCCGGTAACAGTCGGGCACAACCCACATGACCCATTTTTGTTTTTACTTTTTCTCTTTGTATATTCTTTGGTACCCTGGTTCTAAATAGTACCAAGTAATTTATAATTATTCGTTTATTTTTAAATTAATATACCTATAAAGAAGATAAATTAACACAAAATAATCAAGTAATTATTTAAAAGCTTGACTGTTAAGAAAACGCTAAATAAAAAAAGTTTACCTACTTTCTTGAAAAAGGTAAAATCTAAAATAAGGACAACGATGAAACGGAGGGAGTAGAAAAAACAGATCTTAAAAGTGCAAATAGTATATGACGTTTTCTCTTGGAACCTGTGCCATTAAATGACTTATTTTAGATTAAAAATTTGAAGGAGAATTCTTTTACTCTTTAATTTGGTGTCCAATTAAATTATGTCATGAAAATAAACAAATAAGTACTTCCTATGTGTCTAATTATTCATCTAATTTTTCTTTTTTATTTATTTGTCTTCGTTTTGACAAATTAAAAAAATAATAATTTTTTTAATTTATTAATTTTAAAAAAGTTAAAAATTTCTTGAGAAACAGAAATTTTTAATTCGTGCACTTTATAATTTAATAAGGATTCATAGTAAATTTATTATATCAATCATTAATTAGTTACTCGTTTACTTGGTTATTTTGTGTTAATTAAAATTCTATACATACTCTTAAGGGTTAATAACTCTCGAAGATAAAATATGAAAAATAATATTATTATGTATTGATTTTGTGAAATGGTAAAGTATTGAAGAATATTTATTCTTAGTAAGGAGACATATAATGATAAAAAGACCATTTTATTCATTCACTTGTTAAGTGTTCGCTATGTTAATATATATTTTTATTTTCATTTGTCACTTTTCACAAATCAAAAATATATAATCTTTATATTTTATTTTTAATATTAATTATTTGTATTTCTAAGTTACGATTCAAGATATAATTACTAGACATCAAGTGAATAGAGACATTGTAGTAAAATAATTATATTAATTTTTTTAATTAAATTGCTAATCCTAAATATAATTAGTAAAAATAAATAGAGGGAACAATTTGATTGCACACAAAATTTAACAAAGAAATATTTTCAAACTTGTTAATTTTTAATGGAAAAAGGATCAAATATGGCTCTAAACTATTCGAAAAGATTTAGAGATACCTTTTGTTTAAAATTTGATTCACTCGTGCCCTCGCCGTCCAAGTTTTGGTCCAAATATGCCCTTATGGGCGTTAGTTGTCATGTTGGACATGTCCAACTCATTTTTCATTTCTTTAAATGACATATGGAATTACCATATTATTTTGACCTTACCACATAACATTTATATGAAAATGAAAAGATATTCGGACTCATAAACACCTAATCCGACCCATAAATCAACTCCTTTTAAATTTACTATCCGACCCATTTTTAATAGTTTTGTTAAATTTTTATTATTGCGGTAAATCTCGAAAATGAGTAATTGATTAATAAAAAATAGGAAAAAAATGAAAAAATATAAAATTAACGCCAAAAATTCACAAATAAATATAGTAACCTTAAATCTAACATTTCAATATTTTTTAAATTTTTTATTTTTTGATAAATCTCAAAAATGAGTAATTGATTAATAAAAAATATAAAAAGTATGAAAAAAATATAAATTAACGTCAAAAGTTCACAAATAAATATAATAACATTTCAATTTACAATTTTTTAAAATTTTTATATTTTTCGGCGTATCCCGAAAATGAGTAATTTTTTAATAAAAAGGGAAAAATATGAAAATAAAATAAAAAATATACGTCAAAATTCACAAATAAATATACTAAACTTATATTCAATAATTTCAATAATTTTTTTATTTTATATTTTCTTCATATTTTTCTATTTTTTATTTATGATTTTTTTGCGTAATTTTTATATTTTTTCATATTTTTTTTGTTGATAAACTCATTTTCGAGATTTGTCGAAAAAATAAAAAATAAAAAATGTTGAAATTATTGAATTTAAGGTTACTGTATTTAGTTTTTAATTTTGGGCGTTAATTTTATATTTTTTTCATACATTTTATTAATCAATTACTCATTTTGGGATTTAGTAAAAAAATATAAAAAAAGTGTTTAAATTGAATTTAAGGTTACTATAATTATTTATGAATTTTTGGCGTTAATTTTATACATTTTTCATATTTTTCTATTTTTTTTATTAATCAATTACTCATTTTTGTAATTTATCGAAAAAATTAAAATTCAACAAAATTATTGAAAGTTGGTCGGATAATTTATTTAAAAGGGTTGATTTATGGATCAGATTTGGTGTTTATGAGTCCGAAATATCTTTTCTTTTTCATATAAATGTTATGTGGTAAGGCCAAAATGACAAGACAATTTCATGTGATATTTAAAGAAATGAAAAATGAGTTGGATATGTCAAACATGACAACTAACGCCCATAAAGGCATATTTGGATCAAAAGTTGGATGGCGAGGGCATGAGTGAACCAAACTTAACGGAGGGTATGTCTAGATCTTTTCTAATAGTTTAGGGGCATATTTGACTCTTTTTTCATTTAAATAAAACAATATCAATTAAATAAGTATTTTAAAAAAATTATGTGTTATTAAATATAAATATACCACTATTAGTGGCAGAATTTGAATAGATGCCAAGGTTAAGAATAAGAAAATGAAATTAATTATATTTTCAAATAAATTTAAAAGAATATTTAATAGTAATTTGTATGAGAAGGTAAAATACAAATTCTTTTATGAATGGTGCTAAAAGTCAAAGAATCATAATGTCTCATCAGTGACGGAAGCCTGCATCGGGCTTTGGGCCAATTTTCTGTTCAATTAATATATTTTATTTTTTAATATACTTTTAAAAATAACTTTTTAAATTAGATAGATAATAAAAAAAAAATATTTTTAAATTTTATATACCATCAAAGTGTATCACATGTAATAAAAATAGTGTAGTTACAAATAAAATGTATATGTATTATACTATATACTAGCAATATTAATGCTTAACTAATTATTTTTAGACGTCACATTGACTACTGCATTTTAATTTGGAAAAATTATGCGGATAAACAAATTTATACTATTTAATTATTCATCGTAGTCATAGTTTGCTATAATCGCCACTCGCGACTAACATTATACATTAATTACGTGGACTGACTTCGAGTTTGTATAATTAGTTATGTTTGTATATGTATAATTTGCCAGGATATACAAATAAATACGTATAATATACAATTTTTTAGCCTACATATATACAATTCACCTCACTCTCACTCTCTTCCCTCTCTCGCTCGCCTTTCTCCTCCCTCTCCCAACCTCGCTTGCCATTTATACAAATGTATATGGATAATATATAGTTATATACAATTATATACATATACAATTCATCTCTCCCACTCTCTGCCCTCTCTCGCTTGCCTCTATCGATCTCGCTCGCCTCTATCCTCTTTCTCCCAGTCTCGTTCGCCTCTTTCCTCCCTCTCCCAACCTCTCTTGCCATATATACAATTACATATGTATAATATACAATTATCTAACCAATATACATATACAATTCAGCTTTCTCTTACTCTTTTTCCCCTCTCTCTCGCCTCTCTCCTCTCTCTCCCAGTCTCGCTCGCCTCTCTCCTCTCTCTCCCAGTCTTGCTTGTCTCTCTCCTCTCTCTCTCTCAGTCTCGCTCGCTTCTCTCGTCCAAATAACATGTAGCTATAAATTATAATATCAAACTATAGCTATAAAAAGTAACTAATTATTTTTAAGTGGCTATATGTGGTTTCCCTAATTAGTTGAAAACCTTTTTTAGGTGATTAATCAAAAAGGAAATTCTTTGTACTTCTTAAAAAAAAAATATACTAATTTTATACACATATATATATACACTTTAATTATATTAATATATCAAAATTATACATTTTACTAACTATTTTTTTTATAGATGGCTATACAATGTAATATTTTCCTATCTTAGATTTTTGACAAGTATTATAGTTAAGAAAAATTTTAACTTCAATTTTTTTACAACATCAACTAAATTAACTCCAAAATTTAGTTAATGCTATCACGTGCAAATAACTTTGATTTGTACACCATATTAATGCATTATTGTTTTTATAAATGAAGCTATTTTCATCACGCTTTATATCTTTGGAAAAATATATTGGTCCAAGAACCTTAATCATCATTAACAAATAGAGTATCATTACCACTAATTTAATGTTCTATTTTGCTCAAAGTTAAGTGGAAAATGAGAACATTCATTTATTTATTGTGATGGATTGATTACTTATTTTAAAAAAAGTTAGATCCGTACACTAAGCTCTTGCTATGCACTGAGTTTAGAAAATGATCGAACCACAAAAGTCTATTATATAAAGTCTTATCTTTCATTTCTACAAGTGACTATTTTTACGAATCAAATATGTGACCTTCTAATTACATTAGAACAACTTTACCGCTTAAGTTATATGCACAACATTGTAAAAATACACTTCAACATAAGTTGAAATTTTATTATATAACCAATTTTTGATTATGATGAAGATCTATATATAATTACATTTTATATGACCTGATTATGCAAATTATATGATTGATTGTAATATTTCCACAACTCAGCTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAGGTAAATTATTTGGTTTTTTACTTTCTTTCATTTTTACTTCTTGTGACCTTTTTCTAAATATTAAGTGGACGTTTGGACATGTTTCATTTTGAAATTTGAAAAAATGCTTTTCCTTTTCCACCAGACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAA</genome_strand>
        <mrna_strand>GAGAAGGAGAGAGATAACAAGCTTGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGNTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG............................................................................................................................ACCAGCATTTGCTATGATCAATGATGCAAAAAAGAAAGGATTAATCACCCCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="104258" stop="102851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103958" g_stop="103151" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103958" e_stop="103151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCATGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAAGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTATAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGTTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACATAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGACATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCAGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAAAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAAATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTAGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="104916" stop="103669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104616" g_stop="103969" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104616" e_stop="103969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGATAGAACCGGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCTATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCCACTTACAGAGAAGTCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATTACCAACAGAAGGAGTCAAGTATAAAG-CAGGGTTATTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAAAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="104915" stop="103931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104615" g_stop="104231" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104615" e_stop="104231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGATAGAACCGGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCTATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCCACTTACAGAGAAGTCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301478" ref_strand="+" ref_description="SGN-E301478 [cLEX-8-O12]">
      <seq>aaagaaaaataacaaacacccaattcacccattgactttaattttcaagattgagaatttttttttttgaaatttggagtaaatggggttcaaaagaggagttttttcttgttgtttttgtgtagtttttgctgttgttttgctgaattcttgtgttttggttattggaggtgatatagctcatcaagataatgtagctccacatcggcctggttgctacaacaattttgtgctggtcaaagttccaacgtgggttaacgggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="110629" stop="114778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110929" g_stop="111163" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111164" i_stop="114447" i_length="3284">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.959" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114448" g_stop="114478" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="266" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E301478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110929" e_stop="111163"/>
          <exon e_start="114448" e_stop="114478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAATAACAAACACCCAATTCACCCATTGACTTTAATTTTCAAGATTGAGAATTTTTTTTTTTGAAATTTGGAGTAAATGGGGTTCAAAAGAGGAGTTTTTTCTTGTTGTTTTTGTGTAGTTTTTGCTGTTGTTTTGCTGAATTCTTGTGTTTTGGTTATTGGAGGTGATATAGTTCATCAAGATAATGTAGCTCCACATCGGCCTGGTTGTAACAACAATTTTGTGCTGGTAATATCTGATTCTTTTAAACTACTTTTTTTCATTTTCAGAATTTTGAAAAAAATGGAGTCTTTCTTGCTAAGAAGTTCATTTTTTTGTGCTTGTGTGTATGTATGTGTTTATTCTGTGTTTTTTTATAAATGTAAATCTGGTTTGTGGTGCTTGTTACTGGTTTATGTTATGGTTTTGTTAATTTATCTAGTTTTTAAATTTGAATTCTAAGGTTAATTTTATTGATGTTGTAGAATTGAAAGTTGCTTATTAGTATGAAAAAGTACTTACATATCTGATCAGTTTTATTGTAAACCTGGAGTACCATGAGGTCTCACGTTCGAATCCTAGCATGAGCAAAACATTAGTTACCTGGTACTTGTTACTTGTTGTTGGTGGGAGGCGATAGGTATGTTGTGAAATTAGCCTAGGCGTGTGAGAGTTGGCACAGATATCACGATTATTAGAATAATAAATAAATTTATTATTGTAAACTCATTCATAAGAATTTGAATGTAATAGTAGTGGTGCTTGGCAATTTGGAAAGAGGGGATACTATTTCTCTAGGTCTCTTTTTCTTTTTGGTTTGATTTGAGATCGATGATGACATGTAATTGGTTCTATGTTATAGCTGAAATTATCTGTTAGGTGTTACAGCTTGGATTTTTCCATTGCTATTTTTCTGTGTAATTTATTGCTGTATTAAATTTTCAGTCGGTAGAGTATGCTTGCTGTGTTGTTATTATGTTAAATGCTTATTTTGCAGTTTATCCGCGACGCATCCTGATGATAAATTTACTCACCCAATTTCTACTCCACTTGTCTTTTGGTGTAGAGATTTATAGTGGAGTTAGAAAGAATGAGTTGATAGTAATAGCGGATGTTGCAAACCTAAAATCATACTAATAAATGTGTTCTATCCCTATACATGGAATAAATGAGGCGGTCATACATTTTCACATGGTATTAGAGAAGGCGGTGAAAACTTTTCTCTTAAGCTGAGGGTCTCTCGGAAACAACCTCTATACTCTATATCCTACAAAGGTAAGGGTAAGGTTTGCGTACATCCTACCCTCCCTAGACCCCACTTGTGTACTACACTCGCTATGTTGTAGTTGTTGTATTAGAGAAGGTGGCGGTCCTACATTCTAGTTTGACCAACAACGAAAATAGTTTCATATGCTTAACCCCCCAAAAAAGAGGATTAGGCTGCGTATGAGGGGAAATGCTATAATTCTAAAAATAAATAAATAAATGGATAATTCCAAACTCTCTATACCTTAAGCTTTAGGATGTGGTGTTCATGTAATTTGAGGGTAATAATTGCATAGATGTTACATGCAAACAAAAGAATTGAAAAGCTTTCCATTTCAAATTGAATTTCCACCTTTCTTCATTGAACCATTCATAATAATTGCAATATTTTTCACCATTACCATTTTCAAAAAAAATATTTGCAATATTTGTTAAAAGTAAAGACCTTAATCCCAAGGAAATATAACGCAGACCAGATAGTTCACGGTACCATCACTATGCAATGCTTTATCAACCTCGAAAATTCTGAAATTTTAAATTTGCATCCACGTGTTTCATGTTTGACTATAGTTAGTTGGTTCCACATAAGTATTAGTATTTTAAATATGCTCACATTTCTTCTATTCGGAATGATTGTGCCAAGTTGAAAGTGAACCTACCAATTTGGATGGAGAGGCTATAAATCTTTATTAGTTGCAATTTTTTCTCTAAAGAAGTCTTGATTAATTGCTTGAGCTTGAATTTCGGAGATGAATACCTTTTCCATTAAGGAAAAAGGTCAAGTGAAAGGGCTAGGCTATGTTAAGTCCCGCATTGGTTGAAAGAATGGGCATTCCTCCCCTCATGAGATAGGTTTTAAGGGTTGAGTTAGGTCCAAGAGAGCCATATTTTCAGTCTGAAAGGAAAAAGATATGCGAAGTGAATTGGAAGAATGAAGTTCAAATGGTTAACGTGCAGAAAAGAAGATTAGGTTCTTTATTATACAACTTGGCAACTGCCTCTGGTTTATCTTTATTTTAATAACAGTAGATAAAGTATCAGTTTAAAAGCATCCAGGCCAGGAATTGAAGGTTTTATCGGGTAGAACCCATTTTGGCAACTATAGATTGATAGGTGATGCCCAAATATACTGGCCTGAAGATCATCCAATCAGGATTTTGGGAGTGTATGATATCTTTACCGCTCAAAACATCTAAGAAATATCATGATAACGAATCATCAAGCAGAGGATTTCTTTTAAAGACCTGCTGTATCTTCCTTTCCAATTCCTCTGCATTATAGAGGACACTACTTGTTTGCTTATTTGTTTATTTTTTCTTTTTTTGATAATCGTGGTGTCCGGGCCAGCTTGGCGCACCTGGACTAATTCCACGTGGTACCTGCCACCTCCCACCGGCAACATGTACTAGGTAACAATGTCCACCAAGGCTAGAATAGATGAGAAGAAATCACCGAGTGTTTTGTCTCTGACCTGAGACCTCATAGTGCTCATCCCACTTCATTCACCACTAGGCCACACCCTTTGTGTTACTTGTTTGCTTTATTTGTTCCTGTTTATATCACTTAATCCTTCTAAGCCAACCACTTTAGCCAGTAGTCAATTGCACAGGTGCCAGCTTTTGGAACCCAGAACTTATGGAAGGAAAATGTGAAGCAAAAGTTTAATTTGCATCTTTAGTTGATATGACTCTTCAGTGCATTTTCTTTTGCATTTTGAGTGAATAATTCATCAGGTTGTGTTTCTGTCATTTCTTTAAGAAAATAAGAATAAACCTTCCAAACAGAAAAGGCAGGCTCGTTCCAAACAGAAAAGGCAGGCTCGATTACTTACATCCACCACCAGCTTGCTCCTTGGCATCAGTTTATTAGGTCAAATCAGAAGGACTTCCAATTGGGTAGAACTGGAAATTTGCCATCCTCAGTAGTCTTCTTTTAATACAACATGTGTAGAGCCATGAACTTGATGGATTAAAACTTATAAAAAGTGAATTTTTCAGTTTTGTCATGATAATTGTTTATCGATCATTGAACAGATAGAGATGAATACTCCTGATTCTATGGTTTTGTCATACATGTAGTTTGTAAAACTTACTGACGGTGCTGTATTGGCTCATTTGACATACTTCCATGGTATGGCTGGCATAGAAGTTATGTTTTGTTGTTTGGCGTTTTGTTAACAGTATAGGGCTCCAATGTACCTCAATTATTGTTCTCAAATTTGCAACTTGTCACAACATCCATCTCTTATATAGTGTTTCCTCAAATAGGTAAAAGTTCCAACGTGGGTTAACGGGAATG</genome_strand>
        <mrna_strand>AAAGAAAAATAACAAACACCCAATTCACCCATTGACTTTAATTTTCAAGATTGAGAATTTTTTTTTTTGAAATTTGGAGTAAATGGGGTTCAAAAGAGGAGTTTTTTCTTGTTGTTTTTGTGTAGTTTTTGCTGTTGTTTTGCTGAATTCTTGTGTTTTGGTTATTGGAGGTGATATAGCTCATCAAGATAATGTAGCTCCACATCGGCCTGGTTGCTACAACAATTTTGTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGTTCCAACGTGGGTTAACGGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486473" ref_strand="+" ref_description="SGN-E486473 [cSTE-22-C12]">
      <seq>gattgttgtagcatgcctaggaataagctcaccagtgaggccatcctggtgcaccgaggtaattgcagtttcaccacaaaagcaaaagttgcagaagctgctggtgcttcagctatcatcattataaacaatcaaacagagctcttcaagatggtttgtgatcccggtgaatctgatgtggacattggtatccctgctgtgatgctgccacaagatgcaggtacaagcctgatagagtttctcaggaacagttctacagtttctgtgcagatgtactctccgaaacgtccaacggttgatgtcgctgaagtgtttctatggcttatgtcagttgttacgattttatgtgcttcttattggtctgcatggagtgctagagaagccgctattgagcaggacaagttcttaaaagatggctcagatgattatggtggcaaggaggtgactcattctggtggtgtattggacatcaacacaacatcagcacttctgttcgtggtggttgcatcctgcttcttgattatgctttacaaattgatgtccttctggtttattgaagatctggtggatctattttgcatcggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="114280" stop="116217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114580" g_stop="114606" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114607" i_stop="114720" i_length="114">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114721" g_stop="114832" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="139" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114833" i_stop="115144" i_length="312">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115145" g_stop="115264" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="259" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115265" i_stop="115465" i_length="201">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115466" g_stop="115617" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="411" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115618" i_stop="115742" i_length="125">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115743" g_stop="115917" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="586" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E486473" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114580" e_stop="114606"/>
          <exon e_start="114721" e_stop="114832"/>
          <exon e_start="115145" e_stop="115264"/>
          <exon e_start="115466" e_stop="115617"/>
          <exon e_start="115743" e_stop="115917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTGTAGCATGCCTAGGAATAAGGTTGATCTCACATTTATCTTGCCTTTTTTGCAAACATGATTCCTTCTATCAGAGACATCAACTGGTTGCCATATAAGTAGCAAACTCACCTTTTAGGTCTTGATTGTGTGATAGCTCACCAGTGAGGCCATCCTGGTGCACCGAGGTAATTGCAGTTTCACCACAAAAGCAAAAGTTGCAGAAGCTGCTGGTGCTTCAGCAATCATCATTATAAACAATCAAACAGGTTTTGCTGCTTTTATTTCAACATTTTCCTCTGTAATTTCCTTTTTCTTTTCCCTTGTTCTAATATGAATATAGGCTCTTAACTTTATATGTACTTGTGCAAACTGCTTTAATCTACATAGCAGGCATTATAACATTCAACTGAACGTGGTGCCTATACGTTAAGCTTCATTAGAATATGCCTAGGAAAAACAAATGAATACCTGAATTTCTTGTTCTTGTAATGCAAACACTTCTCGAGTATTGTTTCTTGATATGCACAGGCCAAGGGGGTTTAAATATAATTTTGTGTTCTTCTCATATTTCTCTGTAGAGCTCTTCAAGATGGTTTGTGATCCCGGTGAATCTGATGTGGACATCGGTATCCCTGCTGTAATGCTGCCACAAGATGCAGGTACAAGCCTGATAGAGTTTCTCAGGAACAGTTCTACAGGTAGGCTTATTATATTTCACTTCTTGTTAGTCCATTTGTGGGGTGGGATTGGGGGGGGGGGTGGTTGGAGGGAAATTTAGTTAGATGCTTACTTGTGGTGGTTTGCCAGCTACCTTATTCTTCTTCACTATTATTTAATGTGGAATCTATCATGTGGATTTGTTCCCACAATTATGACTTACAGATTTCCCTTCTGCTCAGTTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAAGTAAGTCATAGTCATTCCCGATTACTTTTCCCCTTCCGTTAATGAGTCATTGCATTTTTCAGATATGCAAATGCTCATTGCACCTCTCCTTGAAACTTGGTTGAGTATGTATATTGCTCTTGTAGGATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCG</genome_strand>
        <mrna_strand>GATTGTTGTAGCATGCCTAGGAATAAG..................................................................................................................CTCACCAGTGAGGCCATCCTGGTGCACCGAGGTAATTGCAGTTTCACCACAAAAGCAAAAGTTGCAGAAGCTGCTGGTGCTTCAGCTATCATCATTATAAACAATCAAACAG........................................................................................................................................................................................................................................................................................................................AGCTCTTCAAGATGGTTTGTGATCCCGGTGAATCTGATGTGGACATTGGTATCCCTGCTGTGATGCTGCCACAAGATGCAGGTACAAGCCTGATAGAGTTTCTCAGGAACAGTTCTACAG.........................................................................................................................................................................................................TTTCTGTGCAGATGTACTCTCCGAAACGTCCAACGGTTGATGTCGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCTATTGAGCAGGACAAGTTCTTAAAA.............................................................................................................................GATGGCTCAGATGATTATGGTGGCAAGGAGGTGACTCATTCTGGTGGTGTATTGGACATCAACACAACATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAAGATCTGGTGGATCTATTTTGCATCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427339" ref_strand="+" ref_description="SGN-E427339 [STM-48-E4]">
      <seq>gattgttgtagcatgcctaggaataagctcaccagtgaggccatcctggtgcaccgaggtaattgcagtttcaccacaaaagcaaaagttgcagaagctgctggtgcttcagctatcatcattataaacaatcaaacagagctcttcaagatggtttgtgatcccggtgaatctgatgtggacattggtatccctgctgtgatgctgccacaagatgcaggtacaagcctgatagagtttctcaggaacagttctacagtttctgtgcagatgtactctccgaaacgtccaacggttgatgtcgctgaagtgtttctatggcttatgtcagttgttacgattttatgtgcttcttattggtctgcatggagtgctagagaaaccgctattgagcaggacaagttcttnaaagatggctcaaatgattatggtggcaaggaggtgactcattctggtggtgtattggacatcaacacaacatcagcacttctgttcgtggtggttgcatcctgcttcttgattatgctttacaattgatgtccttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="114280" stop="116179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114580" g_stop="114606" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114607" i_stop="114720" i_length="114">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114721" g_stop="114832" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="139" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114833" i_stop="115144" i_length="312">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115145" g_stop="115264" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="259" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115265" i_stop="115465" i_length="201">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115466" g_stop="115617" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="411" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115618" i_stop="115742" i_length="125">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115743" g_stop="115879" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="547" r_length="136" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E427339" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114580" e_stop="114606"/>
          <exon e_start="114721" e_stop="114832"/>
          <exon e_start="115145" e_stop="115264"/>
          <exon e_start="115466" e_stop="115617"/>
          <exon e_start="115743" e_stop="115879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTGTAGCATGCCTAGGAATAAGGTTGATCTCACATTTATCTTGCCTTTTTTGCAAACATGATTCCTTCTATCAGAGACATCAACTGGTTGCCATATAAGTAGCAAACTCACCTTTTAGGTCTTGATTGTGTGATAGCTCACCAGTGAGGCCATCCTGGTGCACCGAGGTAATTGCAGTTTCACCACAAAAGCAAAAGTTGCAGAAGCTGCTGGTGCTTCAGCAATCATCATTATAAACAATCAAACAGGTTTTGCTGCTTTTATTTCAACATTTTCCTCTGTAATTTCCTTTTTCTTTTCCCTTGTTCTAATATGAATATAGGCTCTTAACTTTATATGTACTTGTGCAAACTGCTTTAATCTACATAGCAGGCATTATAACATTCAACTGAACGTGGTGCCTATACGTTAAGCTTCATTAGAATATGCCTAGGAAAAACAAATGAATACCTGAATTTCTTGTTCTTGTAATGCAAACACTTCTCGAGTATTGTTTCTTGATATGCACAGGCCAAGGGGGTTTAAATATAATTTTGTGTTCTTCTCATATTTCTCTGTAGAGCTCTTCAAGATGGTTTGTGATCCCGGTGAATCTGATGTGGACATCGGTATCCCTGCTGTAATGCTGCCACAAGATGCAGGTACAAGCCTGATAGAGTTTCTCAGGAACAGTTCTACAGGTAGGCTTATTATATTTCACTTCTTGTTAGTCCATTTGTGGGGTGGGATTGGGGGGGGGGGTGGTTGGAGGGAAATTTAGTTAGATGCTTACTTGTGGTGGTTTGCCAGCTACCTTATTCTTCTTCACTATTATTTAATGTGGAATCTATCATGTGGATTTGTTCCCACAATTATGACTTACAGATTTCCCTTCTGCTCAGTTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAAGTAAGTCATAGTCATTCCCGATTACTTTTCCCCTTCCGTTAATGAGTCATTGCATTTTTCAGATATGCAAATGCTCATTGCACCTCTCCTTGAAACTTGGTTGAGTATGTATATTGCTCTTGTAGGATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTG</genome_strand>
        <mrna_strand>GATTGTTGTAGCATGCCTAGGAATAAG..................................................................................................................CTCACCAGTGAGGCCATCCTGGTGCACCGAGGTAATTGCAGTTTCACCACAAAAGCAAAAGTTGCAGAAGCTGCTGGTGCTTCAGCTATCATCATTATAAACAATCAAACAG........................................................................................................................................................................................................................................................................................................................AGCTCTTCAAGATGGTTTGTGATCCCGGTGAATCTGATGTGGACATTGGTATCCCTGCTGTGATGCTGCCACAAGATGCAGGTACAAGCCTGATAGAGTTTCTCAGGAACAGTTCTACAG.........................................................................................................................................................................................................TTTCTGTGCAGATGTACTCTCCGAAACGTCCAACGGTTGATGTCGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAACCGCTATTGAGCAGGACAAGTTCTTNAAA.............................................................................................................................GATGGCTCAAATGATTATGGTGGCAAGGAGGTGACTCATTCTGGTGGTGTATTGGACATCAACACAACATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTAC-AATTGATGTCCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543288" ref_strand="+" ref_description="SGN-E543288 [TUS-65-A11]">
      <seq>gtttctcaggaacagttctacagtttctgtgcagatgtactctccgaaacgtccagcggttgatgtagctgaagtgtttctatggcttatgtcagttgttacgattttatgtgcttcttattggtctgcatggagtgctagagaagccgcaatcgagcaggacaagttcttaaaagatggctcagatgattatggtggcaaggaggtaactcattctggtggtgtattagacatcaacacaatatcagcacttctgttcgtggtggttgcatcctgcttcttgattatgctttacaaattgatgtccttctggtttattgaggttctggtggttctattttgcatcggcggtgtagagggtctacaaacctgtttggtgaccttgttatcatgtttcagatggtttgaacatgctcaagaatcatttcttaaagttccacttctggggcccgtttcatatctcactctggcaatttctcctttctgcttagctttcgctattatgtgggcggttttccgtcatgtctcctttgcttggataggtcaagacatacttggtatggcattgatcatcactgttcttcagatcatacgagttcccaatctcaaggtgggaacagttcttcttacttgtgctttcttctatgacattttttgggtatttgtttccaaatgggtgtttcacaagagtgtgatgatagaggttgcacgtggttataaaagcggagaagaaggaattcccatgttactaaaaatcccgcgaatatgtgatccctggggtggctacagcatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="114942" stop="121180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115242" g_stop="115264" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115265" i_stop="115465" i_length="201">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115617" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="175" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115618" i_stop="115742" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115743" g_stop="115925" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="358" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115926" i_stop="116507" i_length="582">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116508" g_stop="116542" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="393" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116543" i_stop="118533" i_length="1991">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118534" g_stop="118696" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="556" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118697" i_stop="119754" i_length="1058">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119755" g_stop="119808" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="610" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119809" i_stop="120569" i_length="761">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120570" g_stop="120662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="703" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120663" i_stop="120786" i_length="124">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="120787" g_stop="120880" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="797" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E543288" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115242" e_stop="115264"/>
          <exon e_start="115466" e_stop="115617"/>
          <exon e_start="115743" e_stop="115925"/>
          <exon e_start="116508" e_stop="116542"/>
          <exon e_start="118534" e_stop="118696"/>
          <exon e_start="119755" e_stop="119808"/>
          <exon e_start="120570" e_stop="120662"/>
          <exon e_start="120787" e_stop="120880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCAGGAACAGTTCTACAGGTAGGCTTATTATATTTCACTTCTTGTTAGTCCATTTGTGGGGTGGGATTGGGGGGGGGGGTGGTTGGAGGGAAATTTAGTTAGATGCTTACTTGTGGTGGTTTGCCAGCTACCTTATTCTTCTTCACTATTATTTAATGTGGAATCTATCATGTGGATTTGTTCCCACAATTATGACTTACAGATTTCCCTTCTGCTCAGTTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAAGTAAGTCATAGTCATTCCCGATTACTTTTCCCCTTCCGTTAATGAGTCATTGCATTTTTCAGATATGCAAATGCTCATTGCACCTCTCCTTGAAACTTGGTTGAGTATGTATATTGCTCTTGTAGGATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCGGTGTAGAGGTATGTCTCTTAGCTATAAAAGACATAATCAAGTGATTAGTTAATGATGTATTTTCTTTATCAGCTAAGGTTCTTATGGTCACATAGTTCATCATCATAATCTTTTCCTGGGTTATAGTTTCACTGTCACCCCAATATCAAAAAAAAAATAAATTGACCTGTTACTGTGCTAGGCAAAGAAATAGAGTTATATCAGCACTTGAGGGGGTGTATTGAAGACATATAAAGTAATTAATTAATAATTAATAGTGTTCTCTCTCAATTTAAGCTTCCCGATGAGATGTATGACACAGTTCAACAGTATTTTATGAGGAGTCTACACCCAAGGATACAGTATATTAATTTTAATTCAACTAATAAATCTCAATAAAGGTAGCAACTAAATACATTTTCGTTTTGTACATCTTAATAACTTCCATCTGTAGGTGATTCAATATTAGTTGAGCTGAAGCTAATAACTTGCTAGCAAGGGATAGTTAAGCACTTGAAGTAGATGAACAAAATGAACAGAATAAACTCATCTTGTCTCCACGTGACAATTTATGAATTCCATGCTGACAGTATTCCTCATTGTGCTTGCAGGGTCTACAAACCTGTTTGGTGACCTTGTTATCATGGTATGTTTATTTTACTGGTGTTACAAGTTGTTATCTTTTTAGTGACATTGTGTCAAACAGTTTGTTTGGAAAATAGGGAGGGTGAAGAGGAAACAGAGTGAGAGGAGAATTTTCAAGAAATTTTATTACTGTGAGTAGAATTGGGACCAAACTTAAATTTCCCCCTTTTCTTGGGTGGTTGGCTAATTCAGCCCCCTCCATTCTTCGTTCTTCGTTCTATATTAACCATTGTAGTGGATAGTGGATAAATACCGAATCCCTCTCATTCAATGATGCAGGTGCTCATTAGTTTTAAGTTTCCACTGTGGCACTTCTTTTTTATTTGGAAATTTAGTACAGAAAGGAGTATATATTCCCCGGTATGTGCAGCTGTACAAGCTAATAACCTATGCAAGTTTCGGATCAACCTACGCATCCTTTAACCCTCTTTAAACTTCTCCCTTGAGTTCAGGGACCTTAAGGTGATTCTCGAGTTTTGGAGTGATCTATCTATTAAAGTGTTGATAAGACATCCAAATTGGCAACATCAATGCTTACAAGTATGTTCAAAGCTGTCTTTCTGTTTGTGTAACCATTGACCTACTCTCTTCTATGCTTTTTGAATAAAAATGTGTAATCCTAGCACAGTGGATGATATTGATCCATAATTGCGGGCCCTCGTGGCTTGTTAAATACATTGTGACACTCTTGCAGACTTTTGTTGGGGCCAGATCTATGCACATTCATGTCTTCCAGTGCAATAATAGCATGAACTCATAAGCTGAGATCAAAATATGTGGAAAATAAATCTGAAAGCAGCGACAATTAAATAATGGGTATAGAACAATGACGAGAAATTGTTCTCGCAAATGTGAGGCAAAAGTTTGGAAAATTAGATCTTTCAGTTTGATTCAAACCTTAGCATTTCTAAAAGCCTTTTCCATTATCCTGGCATTAAACTTGCATTTTTTAGTATTAGTTCAAATAGAAAGTCATCCATTTTTGGACTTAATTGAACCATAAAAAATATTACTCGCTCCGTTTTAATTTTTGGAAAGGTATTTGACTGGCTACCGCGTTCAAAACAGATATAAAGACTTTGACACTTGTGGCTTAAAATATCTGATAGACATTTCTGTGGCTGCAAAATCATGTCATTAAATGCAACCTGGGAAAGGTAAAGTTTAACTTAAAGGTATTTTTGCTAAAATGGGAAGTATCCCGCATAAATTGGCAGAAAGGAGTACTAACTATTGGTGGAATGGCTAAGAAAACCAAACAGCACCCTTAGTAAACGAAGATACCAAAATATGGATTAGCAGACTACTGAGAAGGTGTTGATATGTGACGCTTTTGTATTTCAGTATATTAAAAGGTATATAAAGTCCTAATAAACCTAGTTTGACTTCTTGAAGTGAAAAGTGTATAATCTGTTTAGGACAATAACCCCTTTGAAAATTCTAAGGGCCTCCTTGGCGATGTATGATATTTCAGTTACTTGGAATTATTTGGCTTCTGGAAGAAGTAGGCTTTTGTGGAAGGCAAAATATTCCCTTCAAGGAGAAATATAGATATCTCTTTGACTGTGGAGTGCTCAAAATTGTTAAGGCATATCATAGGCTTTGTTTCCTATTTCTCATCAGGCTAAACATTTTAGTTTGATTTCTTCCCACTTCTCATGTTTGTTAGGGCTAGCATTTCAGGATAGAACAGTAAAGTTACATCTGGATTCTTCATCCCATTGATTTGAGGAAACTATGGCTTCTTTTTATCGAGCACAGAACAATGATTAATATCCTTTTTTTATCCTTAGTTGAACTTTTCCTTATCTTTTCACGATGGTGCTCTAAGAGTTCGTCATCATTCGTAATAATGTTTGAGATGATGATTGTGACTAGGTTTCTGTTATTTTATTCTTGAGGCAAGGTGCAATTTCATTTTAATTACCATAATGTCATTTCATTAGTTGGTTCTCAGACATGTCAGATGTGGCTAACAGTCATTATTTGTAGTTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTACACTTGTTCCCTTGTAATTTTTTGTATTTATCTTTAAATCCAGCTTCCTACCTTCACATAATGCAAATAAACTGTCTTTTGTTTCCCTGTTTCACCTGACTGATTTTACCTACTGGTTAGAGAGATGCTCTAATGTAAGTTTTTCCATGAAATGATGTCTAATCACTGGGTATTCAAGAAGTTGTGATATTGGTCTTATGTGCTAGTAGATCATGTATAAAATTGACATTTCGTCATGGTGATATCAACTTATACGGTTGAAGGAATAAACTTTTTTTTATGTACTTCAAAAGAAAAAGAAGCTCTTCTGATCTTGTCAACATGAAGTCATGATATGTTTGAGAAAGAGTACACATGTACTTCAAAGTATTTAGTGTGAGAAAAAAGGGAAATCTGCTCCTTTTTTATTATCAGTATATGGGTAAACCTCAGCACCTATATTACAGTACCTTTGTTCTCGGGCACCTATTTATCTCTCTTTTGTGAAAAGTCATAGTACACATTACATTGCTAGTTCTTCATCTAGAGAAGGGGGAACCACCTATCATTACACATTACATTGCCAGTTCAAAATTAGATTGTGAAACACAGGATGAGATACGTAAGTGGGTAATGCCACGAATCATTAGTCTACGTGGAGAGAAATTCAGGAGGAAGAACAGGTGCAGAAAAGCATGTGAGGTGACCTTCTTTGTGCTCATGTGGACAGTTTGGGAGGAGAAAAATAGAAAGCGTGTGAGGGAGTTGAAAGTTCTCATGTATATGGGGAATCATTTTATTTTGTGTTCACTTCGGAGCCCACATCAGACTCCAACGTGTCAAGGCTTGGATGTTGTTTGTGGATAAATATGTTCTCATGTAGCATGCATTATTTGTATATACCATGTATACCTCACTCCGTCTTTTGTCTGAGATCAAGTATAGTATGTGATCTTATCAGCTTAATATTGTCTATTTGGTGTATGCCTCTTCCAATTAATGACCAATTTACCTTTATCAATAAAAATGTATGACCTTATTTTCTTTCTCTTAACTAGGGTATGGCATTGATCATCACTGTTCTTCAGATCATACGAGTTCCCAATCTCAAGGTAAATCAATTCTTTGTGCTGGATTTTCTCATTATGGGGTGGATTTTGTGAGTTATTATTTCTGGTATTTAGACCACAAGCAAATCATTTTTTGACGCACCTTCTCTCCTCGGGGCTTCTAACTTTGGATTAGCAATTCCTTCTTTAATGTGGTGCCCCTAATTTTATATGTCAACTGTGAGTAGATAAATGCTCCTCAAAAAGCTAATACTGACAATGCCTTTGAGTTGAGTGACATATCTATTTTTCGTATTTTTCCCTAACAGAGGAAAAAAAAGGGGTGAGAGGGGAGAAAAGTTGTCAATCACTTATGACTAACTTTTTATACGTACATGAATGAATACAATGGTTTATAGTAAGTAGATACGAAACCCCTTTCACTGAACACTCCTGTCATGCTAGAGACGTTTATCATGTGCACCCAGCCCCTTGCTTGTTTGTTGCAAATGTAATTCAATCTGGAGACCCCTAAAGATTAAGTAAACAGATATTCAACCTAATCCCTTGAATTCACAAGGGAGGCTTGCAAAGCTAACTTGCAGGATACCAAACTTTATTGTCAGTTGACCAAATCCGGCTAGGACCCCTACGCCCACGCCAACATCGTGTCAACATGGGTGCGGTACTGAAAGTGAAGAGTCCAAGCAACTTAGCTTTTATGTCCCCTCTAAAGTGTAAACTCAAATTGTTTGACTTTAACAGGAACTGGCAGTGAAGCCATTAAAGGAGATTAATATTATTCTTTTCTTTGATATTATCAGGTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAGGTAAGCTCATACTTGGTCGCTGATCTCTATCTTAGGTTCACTTGGGTATTTTACTATTTTCAGCCCTGCCTGTCACAAAAGGGTGTTCGTGTTGACAAATGAGAAGTTGTTGTCTTCGATGCAGGTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTG</genome_strand>
        <mrna_strand>GTTTCTCAGGAACAGTTCTACAG.........................................................................................................................................................................................................TTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAA.............................................................................................................................GATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCGGTGTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAAACCTGTTTGGTGACCTTGTTATCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGCATTGATCATCACTGTTCTTCAGATCATACGAGTTCCCAATCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAG............................................................................................................................GTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303172" ref_strand="+" ref_description="SGN-E303172 [cLEX-5-D20]">
      <seq>tttctcaggaacagttctacagcttctgtgcagatgtactctccgaaacgtccagcggttgatgtagctgaagtgtctctatggcttatgtcagttgttacgattttatgtgcttcttattggtctgcatggagtgctagagaagccgcaatcgagcaggacaagttcttaaaagatggctcacatgattatggtggcaaggaggtaactcattctggtggtgtattagacatcaacacaatatcagcacttctgttcggggcggttgcatcctgcttcttgattatgctctacaaattgatgtccttctggtttattgaggttctggtggttctattttgcatcggcggtgtacagggtctacaaacctgatcggtgaccttgtgatcatggtgcagatggctagaacatgctcaagaatcatttcttaaagttccacttgtggggcccgtctcatatctcactctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="114943" stop="118911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115243" g_stop="115264" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115265" i_stop="115465" i_length="201">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115466" g_stop="115617" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="174" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115618" i_stop="115742" i_length="125">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115743" g_stop="115925" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="357" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115926" i_stop="116507" i_length="582">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.835" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116508" g_stop="116542" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="392" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116543" i_stop="118533" i_length="1991">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118534" g_stop="118609" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="468" r_length="76" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E303172" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115243" e_stop="115264"/>
          <exon e_start="115466" e_stop="115617"/>
          <exon e_start="115743" e_stop="115925"/>
          <exon e_start="116508" e_stop="116542"/>
          <exon e_start="118534" e_stop="118609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAGGAACAGTTCTACAGGTAGGCTTATTATATTTCACTTCTTGTTAGTCCATTTGTGGGGTGGGATTGGGGGGGGGGGTGGTTGGAGGGAAATTTAGTTAGATGCTTACTTGTGGTGGTTTGCCAGCTACCTTATTCTTCTTCACTATTATTTAATGTGGAATCTATCATGTGGATTTGTTCCCACAATTATGACTTACAGATTTCCCTTCTGCTCAGTTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAAGTAAGTCATAGTCATTCCCGATTACTTTTCCCCTTCCGTTAATGAGTCATTGCATTTTTCAGATATGCAAATGCTCATTGCACCTCTCCTTGAAACTTGGTTGAGTATGTATATTGCTCTTGTAGGATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCGGTGTAGAGGTATGTCTCTTAGCTATAAAAGACATAATCAAGTGATTAGTTAATGATGTATTTTCTTTATCAGCTAAGGTTCTTATGGTCACATAGTTCATCATCATAATCTTTTCCTGGGTTATAGTTTCACTGTCACCCCAATATCAAAAAAAAAATAAATTGACCTGTTACTGTGCTAGGCAAAGAAATAGAGTTATATCAGCACTTGAGGGGGTGTATTGAAGACATATAAAGTAATTAATTAATAATTAATAGTGTTCTCTCTCAATTTAAGCTTCCCGATGAGATGTATGACACAGTTCAACAGTATTTTATGAGGAGTCTACACCCAAGGATACAGTATATTAATTTTAATTCAACTAATAAATCTCAATAAAGGTAGCAACTAAATACATTTTCGTTTTGTACATCTTAATAACTTCCATCTGTAGGTGATTCAATATTAGTTGAGCTGAAGCTAATAACTTGCTAGCAAGGGATAGTTAAGCACTTGAAGTAGATGAACAAAATGAACAGAATAAACTCATCTTGTCTCCACGTGACAATTTATGAATTCCATGCTGACAGTATTCCTCATTGTGCTTGCAGGGTCTACAAACCTGTTTGGTGACCTTGTTATCATGGTATGTTTATTTTACTGGTGTTACAAGTTGTTATCTTTTTAGTGACATTGTGTCAAACAGTTTGTTTGGAAAATAGGGAGGGTGAAGAGGAAACAGAGTGAGAGGAGAATTTTCAAGAAATTTTATTACTGTGAGTAGAATTGGGACCAAACTTAAATTTCCCCCTTTTCTTGGGTGGTTGGCTAATTCAGCCCCCTCCATTCTTCGTTCTTCGTTCTATATTAACCATTGTAGTGGATAGTGGATAAATACCGAATCCCTCTCATTCAATGATGCAGGTGCTCATTAGTTTTAAGTTTCCACTGTGGCACTTCTTTTTTATTTGGAAATTTAGTACAGAAAGGAGTATATATTCCCCGGTATGTGCAGCTGTACAAGCTAATAACCTATGCAAGTTTCGGATCAACCTACGCATCCTTTAACCCTCTTTAAACTTCTCCCTTGAGTTCAGGGACCTTAAGGTGATTCTCGAGTTTTGGAGTGATCTATCTATTAAAGTGTTGATAAGACATCCAAATTGGCAACATCAATGCTTACAAGTATGTTCAAAGCTGTCTTTCTGTTTGTGTAACCATTGACCTACTCTCTTCTATGCTTTTTGAATAAAAATGTGTAATCCTAGCACAGTGGATGATATTGATCCATAATTGCGGGCCCTCGTGGCTTGTTAAATACATTGTGACACTCTTGCAGACTTTTGTTGGGGCCAGATCTATGCACATTCATGTCTTCCAGTGCAATAATAGCATGAACTCATAAGCTGAGATCAAAATATGTGGAAAATAAATCTGAAAGCAGCGACAATTAAATAATGGGTATAGAACAATGACGAGAAATTGTTCTCGCAAATGTGAGGCAAAAGTTTGGAAAATTAGATCTTTCAGTTTGATTCAAACCTTAGCATTTCTAAAAGCCTTTTCCATTATCCTGGCATTAAACTTGCATTTTTTAGTATTAGTTCAAATAGAAAGTCATCCATTTTTGGACTTAATTGAACCATAAAAAATATTACTCGCTCCGTTTTAATTTTTGGAAAGGTATTTGACTGGCTACCGCGTTCAAAACAGATATAAAGACTTTGACACTTGTGGCTTAAAATATCTGATAGACATTTCTGTGGCTGCAAAATCATGTCATTAAATGCAACCTGGGAAAGGTAAAGTTTAACTTAAAGGTATTTTTGCTAAAATGGGAAGTATCCCGCATAAATTGGCAGAAAGGAGTACTAACTATTGGTGGAATGGCTAAGAAAACCAAACAGCACCCTTAGTAAACGAAGATACCAAAATATGGATTAGCAGACTACTGAGAAGGTGTTGATATGTGACGCTTTTGTATTTCAGTATATTAAAAGGTATATAAAGTCCTAATAAACCTAGTTTGACTTCTTGAAGTGAAAAGTGTATAATCTGTTTAGGACAATAACCCCTTTGAAAATTCTAAGGGCCTCCTTGGCGATGTATGATATTTCAGTTACTTGGAATTATTTGGCTTCTGGAAGAAGTAGGCTTTTGTGGAAGGCAAAATATTCCCTTCAAGGAGAAATATAGATATCTCTTTGACTGTGGAGTGCTCAAAATTGTTAAGGCATATCATAGGCTTTGTTTCCTATTTCTCATCAGGCTAAACATTTTAGTTTGATTTCTTCCCACTTCTCATGTTTGTTAGGGCTAGCATTTCAGGATAGAACAGTAAAGTTACATCTGGATTCTTCATCCCATTGATTTGAGGAAACTATGGCTTCTTTTTATCGAGCACAGAACAATGATTAATATCCTTTTTTTATCCTTAGTTGAACTTTTCCTTATCTTTTCACGATGGTGCTCTAAGAGTTCGTCATCATTCGTAATAATGTTTGAGATGATGATTGTGACTAGGTTTCTGTTATTTTATTCTTGAGGCAAGGTGCAATTTCATTTTAATTACCATAATGTCATTTCATTAGTTGGTTCTCAGACATGTCAGATGTGGCTAACAGTCATTATTTGTAGTTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTG</genome_strand>
        <mrna_strand>TTTCTCAGGAACAGTTCTACAG.........................................................................................................................................................................................................CTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTCTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAA.............................................................................................................................GATGGCTCACATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGGGGCGGTTGCATCCTGCTTCTTGATTATGCTCTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCGGTGTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTACAAACCTGATCGGTGACCTTGTGATCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAGATGGCTAGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTGTGGGGCCCGTCTCATATCTCACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302459" ref_strand="+" ref_description="SGN-E302459 [cLEW-27-D6]">
      <seq>tttcctatttctcatcaggctaaacattttagtttgatttcttcccacttctcatgtttgttagggctagcatttcaggatagaacagtaaagttacatctggattcttcatcccattgatttgaggaaactatggcttctttttatcgagcacagaacaatgattaatatcctttttttatccttagttgaacttttccttatcttttcacgatggtgctctaagagttcgtcatcattcgtaataatgtttgagatgatgattgtgactaggtttctgttattttattcttgaggcaaggtgcaatttcattttaattaccataatgtcatttcattagttggttctcagacatgtcagatgtggctaacagtcattatttgtagtttcagatggtttgaacatgctcaagaatcatttcttaaagttccacttctggggcccgtttcatatctcactctggcaatttctcctttctgcttagctttcgctattatgtgggcggttttccgtcatgtctcctttgcttggataggtcaagacatacttgtaagaactattatcatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="117847" stop="119018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118147" g_stop="118718" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E302459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118147" e_stop="118718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTATTTCTCATCAGGCTAAACATTTTAGTTTGATTTCTTCCCACTTCTCATGTTTGTTAGGGCTAGCATTTCAGGATAGAACAGTAAAGTTACATCTGGATTCTTCATCCCATTGATTTGAGGAAACTATGGCTTCTTTTTATCGAGCACAGAACAATGATTAATATCCTTTTTTTATCCTTAGTTGAACTTTTCCTTATCTTTTCACGATGGTGCTCTAAGAGTTCGTCATCATTCGTAATAATGTTTGAGATGATGATTGTGACTAGGTTTCTGTTATTTTATTCTTGAGGCAAGGTGCAATTTCATTTTAATTACCATAATGTCATTTCATTAGTTGGTTCTCAGACATGTCAGATGTGGCTAACAGTCATTATTTGTAGTTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTAC</genome_strand>
        <mrna_strand>TTTCCTATTTCTCATCAGGCTAAACATTTTAGTTTGATTTCTTCCCACTTCTCATGTTTGTTAGGGCTAGCATTTCAGGATAGAACAGTAAAGTTACATCTGGATTCTTCATCCCATTGATTTGAGGAAACTATGGCTTCTTTTTATCGAGCACAGAACAATGATTAATATCCTTTTTTTATCCTTAGTTGAACTTTTCCTTATCTTTTCACGATGGTGCTCTAAGAGTTCGTCATCATTCGTAATAATGTTTGAGATGATGATTGTGACTAGGTTTCTGTTATTTTATTCTTGAGGCAAGGTGCAATTTCATTTTAATTACCATAATGTCATTTCATTAGTTGGTTCTCAGACATGTCAGATGTGGCTAACAGTCATTATTTGTAGTTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427340" ref_strand="-" ref_description="SGN-E427340 [STM-48-E4]">
      <seq>ctgtttggtgaccgtgttatcatgtttcagatggtttgaacatgctcaagaatcgtttcttaaagttccacttctgggccctgtttcatatcttactctggcaatttctcctttctgcttagctttcgctgttatgtgggcggttttccgtcatgtctcctttgcttggataggtcaagacatacttggtatggcattgatcatcaccgttcttcagatcatacgagttcccaatctcaaggtgggaacagttcttcttacttgtgctttcttctatgacattttttgggtatttgtttccaaatgggtgttccacaagagtgtgatgatagaggttgcacgtggttataaaagcggagaagaaggaattcccatgttactgaaaatcccgcgaatatgtgatccctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcactaagatatgactggttgtgcaagaagagccttcaagccggttattttctatggactatgactgcttatggtttaggtttatttgcaacatatgtggctctgaacttgatggacggccatggtcaacctgctttgctatatatagttccggccacattaggcacatttttgatgttggcagcaaaaagaggtgagctgaagcatctatggacaagaggagaaccatataggacttgcccgcatatccagcttcaaccggccgagtaatttgatatcgtactctctctgtaatcacatatagctctgatttgtctaaatacaaagttaggtacatatgttagaaatctgaaagaggttagagttctcaaaagtcaataggttaaacttaggcttctccccgagtaaacgactccccgaatacaatggctgttaatgactgactgtttgggaggtgaaaaatagagcatgtagtttaccagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="118224" stop="124424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118540" g_stop="118696" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="187" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118697" i_stop="119754" i_length="1058">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119755" g_stop="119808" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="241" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119809" i_stop="120569" i_length="761">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120570" g_stop="120662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="334" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120663" i_stop="120786" i_length="124">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120787" g_stop="120929" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="477" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="548" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="632" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123806" g_stop="124120" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="950" r_length="318" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="953" polyA_stop="967"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E427340" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118540" e_stop="118696"/>
          <exon e_start="119755" e_stop="119808"/>
          <exon e_start="120570" e_stop="120662"/>
          <exon e_start="120787" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="124120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTACACTTGTTCCCTTGTAATTTTTTGTATTTATCTTTAAATCCAGCTTCCTACCTTCACATAATGCAAATAAACTGTCTTTTGTTTCCCTGTTTCACCTGACTGATTTTACCTACTGGTTAGAGAGATGCTCTAATGTAAGTTTTTCCATGAAATGATGTCTAATCACTGGGTATTCAAGAAGTTGTGATATTGGTCTTATGTGCTAGTAGATCATGTATAAAATTGACATTTCGTCATGGTGATATCAACTTATACGGTTGAAGGAATAAACTTTTTTTTATGTACTTCAAAAGAAAAAGAAGCTCTTCTGATCTTGTCAACATGAAGTCATGATATGTTTGAGAAAGAGTACACATGTACTTCAAAGTATTTAGTGTGAGAAAAAAGGGAAATCTGCTCCTTTTTTATTATCAGTATATGGGTAAACCTCAGCACCTATATTACAGTACCTTTGTTCTCGGGCACCTATTTATCTCTCTTTTGTGAAAAGTCATAGTACACATTACATTGCTAGTTCTTCATCTAGAGAAGGGGGAACCACCTATCATTACACATTACATTGCCAGTTCAAAATTAGATTGTGAAACACAGGATGAGATACGTAAGTGGGTAATGCCACGAATCATTAGTCTACGTGGAGAGAAATTCAGGAGGAAGAACAGGTGCAGAAAAGCATGTGAGGTGACCTTCTTTGTGCTCATGTGGACAGTTTGGGAGGAGAAAAATAGAAAGCGTGTGAGGGAGTTGAAAGTTCTCATGTATATGGGGAATCATTTTATTTTGTGTTCACTTCGGAGCCCACATCAGACTCCAACGTGTCAAGGCTTGGATGTTGTTTGTGGATAAATATGTTCTCATGTAGCATGCATTATTTGTATATACCATGTATACCTCACTCCGTCTTTTGTCTGAGATCAAGTATAGTATGTGATCTTATCAGCTTAATATTGTCTATTTGGTGTATGCCTCTTCCAATTAATGACCAATTTACCTTTATCAATAAAAATGTATGACCTTATTTTCTTTCTCTTAACTAGGGTATGGCATTGATCATCACTGTTCTTCAGATCATACGAGTTCCCAATCTCAAGGTAAATCAATTCTTTGTGCTGGATTTTCTCATTATGGGGTGGATTTTGTGAGTTATTATTTCTGGTATTTAGACCACAAGCAAATCATTTTTTGACGCACCTTCTCTCCTCGGGGCTTCTAACTTTGGATTAGCAATTCCTTCTTTAATGTGGTGCCCCTAATTTTATATGTCAACTGTGAGTAGATAAATGCTCCTCAAAAAGCTAATACTGACAATGCCTTTGAGTTGAGTGACATATCTATTTTTCGTATTTTTCCCTAACAGAGGAAAAAAAAGGGGTGAGAGGGGAGAAAAGTTGTCAATCACTTATGACTAACTTTTTATACGTACATGAATGAATACAATGGTTTATAGTAAGTAGATACGAAACCCCTTTCACTGAACACTCCTGTCATGCTAGAGACGTTTATCATGTGCACCCAGCCCCTTGCTTGTTTGTTGCAAATGTAATTCAATCTGGAGACCCCTAAAGATTAAGTAAACAGATATTCAACCTAATCCCTTGAATTCACAAGGGAGGCTTGCAAAGCTAACTTGCAGGATACCAAACTTTATTGTCAGTTGACCAAATCCGGCTAGGACCCCTACGCCCACGCCAACATCGTGTCAACATGGGTGCGGTACTGAAAGTGAAGAGTCCAAGCAACTTAGCTTTTATGTCCCCTCTAAAGTGTAAACTCAAATTGTTTGACTTTAACAGGAACTGGCAGTGAAGCCATTAAAGGAGATTAATATTATTCTTTTCTTTGATATTATCAGGTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAGGTAAGCTCATACTTGGTCGCTGATCTCTATCTTAGGTTCACTTGGGTATTTTACTATTTTCAGCCCTGCCTGTCACAAAAGGGTGTTCGTGTTGACAAATGAGAAGTTGTTGTCTTCGATGCAGGTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTC-AAAGTC-ATAGGTTAAACTTAGGCTTCTCCCCGA--CCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACT-AGCACAAGGTGAAAAATAGAGCATGTAGTTTACCA</genome_strand>
        <mrna_strand>ATGGTTTGAACATGCTCAAGAATCGTTTCTTAAAGTTCCACTTCTGGGCCCTGTTTCATATCTTACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTGTTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGCATTGATCATCACCGTTCTTCAGATCATACGAGTTCCCAATCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTCCACAAGAGTGTGATGATAGAG............................................................................................................................GTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTGAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGTTGTGCAAGAAGAGCCTTCAAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGGCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGGCAGCAAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGACTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTTGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTAAATACAAAGTTA-GGTACATATG-TTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAAGTCAATAGGTTAAACTTAGGCTTCTCCCCGAGTAAACGACTCCCCGAATACAATGGCTGTTAATGACTGACTGTTTGGGAGGTGAAAAATAGAGCATGTAGTTTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618987" ref_strand="+" ref_description="SGN-E618987 [69671]">
      <seq>gtttcatatcttactctggcaatttctcctttctgcttagctttcgctgttatgtgggcggttttccgtcatgtctcctttgcttggataggtcaagacatacttggtatggcattgatcatcaccgttcttcagatcatacgagtgcccaatctcaaggtgggaacagttcttcttacttgtgctttcttctatgacattttttgggtatttgtttccaaatgggtgttccacaagagtgtgatgatagaggttgcacgtggttataaaagtggagaagaaggaattcccatgttactgaaaatcccgcgaatatgtgatccctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcactaagatatgactggttgtgcaagaagagccttcgagccggttattttctatggactatgactgcttatggtttaggtttatttgcaacatatgtggctctgaatttgatggacggccatggtcaacctgctttgctatatatagttccggccacattaggcacatttttgatgttggcagcaaaaagaggtgagctgaaagcatctatggacaaagaggagagccatataggactttgccctcatacccagttcaaccggccgagtaatttgatagcgtactctctctgtaatcacatatagatctgatttgtctaaatacaaagtttagggtacatatgtcagaaatcttgaaagagggttaagttctcaaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="118292" stop="124284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118592" g_stop="118696" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118697" i_stop="119754" i_length="1058">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119755" g_stop="119808" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="159" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119809" i_stop="120569" i_length="761">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120570" g_stop="120662" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="252" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120663" i_stop="120786" i_length="124">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120787" g_stop="120929" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="395" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="466" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="550" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="123806" g_stop="124019" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="768" r_length="218" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E618987" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118592" e_stop="118696"/>
          <exon e_start="119755" e_stop="119808"/>
          <exon e_start="120570" e_stop="120662"/>
          <exon e_start="120787" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="124019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTACACTTGTTCCCTTGTAATTTTTTGTATTTATCTTTAAATCCAGCTTCCTACCTTCACATAATGCAAATAAACTGTCTTTTGTTTCCCTGTTTCACCTGACTGATTTTACCTACTGGTTAGAGAGATGCTCTAATGTAAGTTTTTCCATGAAATGATGTCTAATCACTGGGTATTCAAGAAGTTGTGATATTGGTCTTATGTGCTAGTAGATCATGTATAAAATTGACATTTCGTCATGGTGATATCAACTTATACGGTTGAAGGAATAAACTTTTTTTTATGTACTTCAAAAGAAAAAGAAGCTCTTCTGATCTTGTCAACATGAAGTCATGATATGTTTGAGAAAGAGTACACATGTACTTCAAAGTATTTAGTGTGAGAAAAAAGGGAAATCTGCTCCTTTTTTATTATCAGTATATGGGTAAACCTCAGCACCTATATTACAGTACCTTTGTTCTCGGGCACCTATTTATCTCTCTTTTGTGAAAAGTCATAGTACACATTACATTGCTAGTTCTTCATCTAGAGAAGGGGGAACCACCTATCATTACACATTACATTGCCAGTTCAAAATTAGATTGTGAAACACAGGATGAGATACGTAAGTGGGTAATGCCACGAATCATTAGTCTACGTGGAGAGAAATTCAGGAGGAAGAACAGGTGCAGAAAAGCATGTGAGGTGACCTTCTTTGTGCTCATGTGGACAGTTTGGGAGGAGAAAAATAGAAAGCGTGTGAGGGAGTTGAAAGTTCTCATGTATATGGGGAATCATTTTATTTTGTGTTCACTTCGGAGCCCACATCAGACTCCAACGTGTCAAGGCTTGGATGTTGTTTGTGGATAAATATGTTCTCATGTAGCATGCATTATTTGTATATACCATGTATACCTCACTCCGTCTTTTGTCTGAGATCAAGTATAGTATGTGATCTTATCAGCTTAATATTGTCTATTTGGTGTATGCCTCTTCCAATTAATGACCAATTTACCTTTATCAATAAAAATGTATGACCTTATTTTCTTTCTCTTAACTAGGGTATGGCATTGATCATCACTGTTCTTCAGATCATACGAGTTCCCAATCTCAAGGTAAATCAATTCTTTGTGCTGGATTTTCTCATTATGGGGTGGATTTTGTGAGTTATTATTTCTGGTATTTAGACCACAAGCAAATCATTTTTTGACGCACCTTCTCTCCTCGGGGCTTCTAACTTTGGATTAGCAATTCCTTCTTTAATGTGGTGCCCCTAATTTTATATGTCAACTGTGAGTAGATAAATGCTCCTCAAAAAGCTAATACTGACAATGCCTTTGAGTTGAGTGACATATCTATTTTTCGTATTTTTCCCTAACAGAGGAAAAAAAAGGGGTGAGAGGGGAGAAAAGTTGTCAATCACTTATGACTAACTTTTTATACGTACATGAATGAATACAATGGTTTATAGTAAGTAGATACGAAACCCCTTTCACTGAACACTCCTGTCATGCTAGAGACGTTTATCATGTGCACCCAGCCCCTTGCTTGTTTGTTGCAAATGTAATTCAATCTGGAGACCCCTAAAGATTAAGTAAACAGATATTCAACCTAATCCCTTGAATTCACAAGGGAGGCTTGCAAAGCTAACTTGCAGGATACCAAACTTTATTGTCAGTTGACCAAATCCGGCTAGGACCCCTACGCCCACGCCAACATCGTGTCAACATGGGTGCGGTACTGAAAGTGAAGAGTCCAAGCAACTTAGCTTTTATGTCCCCTCTAAAGTGTAAACTCAAATTGTTTGACTTTAACAGGAACTGGCAGTGAAGCCATTAAAGGAGATTAATATTATTCTTTTCTTTGATATTATCAGGTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAGGTAAGCTCATACTTGGTCGCTGATCTCTATCTTAGGTTCACTTGGGTATTTTACTATTTTCAGCCCTGCCTGTCACAAAAGGGTGTTCGTGTTGACAAATGAGAAGTTGTTGTCTTCGATGCAGGTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTG-AAGCATCTATGGAC-AAGAGGAGAACCATATAGGA-TTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAG-TTAGGGTACATATGTTTAGAAATC-TGAAAGAGGTTAGAGTTCTC-AAAGTC</genome_strand>
        <mrna_strand>GTTTCATATCTTACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTGTTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATGGCATTGATCATCACCGTTCTTCAGATCATACGAGTGCCCAATCTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTCCACAAGAGTGTGATGATAGAG............................................................................................................................GTTGCACGTGGTTATAAAAGTGGAGAAGAAGGAATTCCCATGTTACTGAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCACTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGTTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCAACATATGTGGCTCTGAATTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGGCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGGCAGCAAAAAGAGGTGAGCTGAAAGCATCTATGGACAAAGAGGAGAGCCATATAGGACTTTGCCCTCATACCCAG-TTCAACCGGCCGAGTAATTTGATAGCGTACTCTCTCTGTAATCACATATAGATCTGATTTGTCTAAATACAAAGTTTAGGGTACATATG-TCAGAAATCTTGAAAGAGGGTTAAGTTCTCAAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543287" ref_strand="+" ref_description="SGN-E543287 [TUS-65-A11](-)">
      <seq>ttccaaatgggtgtttcacaagagtgtgatgatagaggttgcacgtggttataaaagcggagaagaaggaattcccatgttactaaaaatcccgcgaatatgtgatccctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcattaagatatgactggctgtgcaagaagagccttcgagccggttattttctatggactatgactgcttatggtttaggtttgtttgcaacatatgtggctctgaacttgatggacggccatggtcaacctgctttgctatatatagttccgtccacattaggcacatttttgatgttgtcagccaaaagaggtgagctgaagcatctatggacaagaggagaaccatataggatttgcccgcatatccagcttcaaccggccgagtaattcgatatcgtactctctctgtaatcacatatagctctgatttgtctacatacaaagttagggtacatatgtttagaaatctgaaagaggttagagttctcaaagtcataggttaaacttaggcttctccccgaccccgactgcccaaatacaatggctgttaatgactgactagcacaaggtgaaaaatagagcatgtagtttaccagttatgcagttgactagagttgcagcaaagttgagtttaacttctatacactgacaagtaaccgtttaatgtaaagtggaatcagtaatctagaaaataagacaggttacaccttttaacaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="120326" stop="124541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120626" g_stop="120662" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120663" i_stop="120786" i_length="124">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120787" g_stop="120929" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="180" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="251" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="335" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123806" g_stop="124240" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="770" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="788"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E543287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120626" e_stop="120662"/>
          <exon e_start="120787" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="124240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAGGTAAGCTCATACTTGGTCGCTGATCTCTATCTTAGGTTCACTTGGGTATTTTACTATTTTCAGCCCTGCCTGTCACAAAAGGGTGTTCGTGTTGACAAATGAGAAGTTGTTGTCTTCGATGCAGGTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAAC</genome_strand>
        <mrna_strand>TTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAG............................................................................................................................GTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389936" ref_strand="+" ref_description="SGN-E389936 [TUS-4-N24]">
      <seq>cgagccctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcattaagatatgactggctgtgcaagaagagccttcgagccggttattttctatggactatgactgcttatggtttaggtttgtttgcaacatatgtggctctgaacttgatggacggccatggtcaacctgctttgctatatatagttccgtccacattaggcacatttttgatgttgtcagccaaaagaggtgagctgaagcatctatggacaagaggagaaccatataggatttgcccgcatatccagcttcaaccggccgagtaattcgatatcgtactctctctgtaatcacatatagctctgatttgtctacatacaaagttagggtacatatgtttagaaatctgaaagaggttagagttctcaaagtcataggttaaacttaggcttctccccgaccccgactgcccaaatacaatggctgttaatgactgactagcacaaggtgaaaaatagagcatgtagtttaccagttatgcagttgactagagttgcagcaaagttgagtttaacttctatacactgacaagtaaccgtttaatggtaagtggaatcagtaatctagaaaataagacaggttacaccttttaacattgtgaaaattngtcacagcgtcagtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="120553" stop="124572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120852" g_stop="120929" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="149" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="233" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123806" g_stop="124272" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="700" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E389936" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120852" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="124272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATA</genome_strand>
        <mrna_strand>CGAGCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGGTAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTNGTCACAGCGTCAGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549983" ref_strand="+" ref_description="SGN-E549983 [TUS-5-N24]">
      <seq>ccctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcattaagatatgactggctgtgcaagaagagccttcgagccggttattttctatggactatgactgcttatggtttaggtttgtttgcaacatatgtggctctgaacttgatggacggccatggtcaacctgctttgctatatatagttccgtccacattaggcacatttttgatgttgtcagccaaaagaggtgagctgaagcatctatggacaagaggagaaccatataggatttgcccgcatatccagcttcaaccggccgagtaattcgatatcgtactctctctgtaatcacatatagctctgatttgtctacatacaaagttagggtacatatgtttagaaatctgaaagaggttagagttctcaaagtcataggttaaacttaggcttctccccgaccccgactgcccaaatacaatggctgttaatgactgactagcacaaggtgaaaaatagagcatgtagtttaccagttatgcagttgactagagttgcagcaaagttgagtttaacttctatacactgacnagtaaccgtttaatggtaagtggaatcagtaatctagaaaataagacagggtacaccttttaacatttgtgaaatttgtcacagcgtcagtgtatacnagttaaatccnataacgtttatacagctcttgcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="120556" stop="124611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120856" g_stop="120929" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="145" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="229" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123806" g_stop="124311" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="735" r_length="506" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E549983" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120856" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="124311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACA-TTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTT</genome_strand>
        <mrna_strand>CCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACNAGTAACCGTTTAATGGTAAGTGGAATCAGTAATCTAGAAAATAAGACAGGGTACACCTTTTAACATTTGTGAAATTTGTC-ACAGCGTCAGTGTATACNAGTTAAATCCNATAACGTTTATACAGCTCTTGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235779" ref_strand="+" ref_description="SGN-E235779 [cLED-15-A2]">
      <seq>cctggggtggctacagcatcattgggtttggcgacataattttaccaggattactagtagcattttcattaagatatgactggctgtgcaagaagagccttcgagccggttattttctatggactatgactgcttatggtttaggtttgtttgcaacatatgtggctctgaacttgatggacggccatggtcaacctgctttgctatatatagttgcgtccacattaggcacatttttgatgttgtcagccaaaagaggtgagctgaagcatctatggacaagaggagaaccatatcggatttgcccgcatatgcagcttcaaccggacgagtaattcgatatcgaactctctctgtaatcacatctagctctgagctgtctacatacatagttagggtacatatgtctagaaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="120557" stop="124296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120857" g_stop="120929" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121519" g_stop="121589" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="144" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527">
            <donor d_prob="0.610" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122117" g_stop="122200" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="228" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123806" g_stop="123996" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="419" r_length="191" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E235779" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120857" e_stop="120929"/>
          <exon e_start="121519" e_stop="121589"/>
          <exon e_start="122117" e_stop="122200"/>
          <exon e_start="123806" e_stop="123996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAGGTTCGATCACTAGCTAAATGGAACTTGGTTTCACCCATTAATATGGTTCCATAAAGCCCCGTGTATCTAATACGTGGATTACTAGTAGCTTTCATTTTAAGATTTGGTCAGTGAGCTGAATCACAGTTGCACTAAAATCATTGATGTTTTCCACAAATCCCTATGTCTTTCAATGCTTCAGCTTTTTTTGTTACACCACATTTTTCATATGCAAAAAAGGCATGATTTATGCACCTGGTCTACACAATTAGCAGAAAGACTGTAACCCCAGCTGATGCCTCTGGGGGGCTATATATTTTATGGTTGTCTAGAGTACTTTTGCTTGCGGGAAAGAAAGTAATAGTTTATAGAGAAGATGTACCTAATTTCTTGTTTGGGACTGAATCTTAGTAGTAGTTGTTGTTGCCTTCCCAAATAGGGGTTTTTCTACTTATCAATAAAGCAAAAAGGGTTGAGGTATCATGATTAACGCTTCATGCTTACAACTTGAAGTATAAAGGCAATCAAAAGATTTTTACTTCTTCGTTTTTATTTGTTACATTATGTTCTTTGTTGCAGATATTTACCTCCTTGTTGCTCTTTGTTGCAGATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAGGTATAACTTGCATAGAAAAATGTGATTTGATTTAATCACTTGTCATAGTGCTCTTCTTGTAACCAAGTTATACCATCTTCTCTTTGTCAATACAGATACATCAGTTTGCATTTCTCTCTTTCCCTGCTCCCAGTATTCCCTTCATCTTCTTCGTCTAATAAAAACAAAGGATTGCTACATAGAATTCACGCTACCTGAAAAGTGAAGGATAGCAGTCACATTATCTTCTTTTTTACCTCAATTCCTGTTACTGTTAAGATAATTAGATCAGATAAATGTTAGAGCTCATGAAACATTTTAAGGTTATATGTTCTCAATGTTTGAGGTTCTTTTTTCTTTTGGGGACTATACATCTACATTTGAGCTTGGTACCTACCCTTTCATCTCATCAAAAGTTTAACATGCTTTCTGTGACCAACTGAAAAGTTTGGATATACATGATGTGTTGCATCTTTGAAACTGTTACCAATTTCTGCTAAATTTAGGATTAATCGAAGTTCTTGTTTGACTTTAATTTTCTTGAACAGGTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAGGTACGTTAGGAAGCACAAAAAGTCACTCATCTGTCACAAAAATTATTTTGGAGCAGCCAATATTTAGATTCTGATAGTGAAGGTGGAGTCTACACCACATATAATTGTGATTCCACGGGAAGAGGAAATCAGCCAATTAGGCATCAGTCTTATATCCATGAAATTTACTGGCAGGTGTTGAGAAGGAAAATGCTTTATGGACCTCTTAATCTGACATAGAGAGCAATTTTAAATTGGAACTGTTATATCTATGCACCGAAAGATATAATCAGGAGTCCTACACCCAAGTGTGTGGCCTGGCAGTCAATGAAGTGGGTGGAAACCTTGGAGAACATGGTTCAAATCCCAGCAGAGACAAAAACGCTAGGTGATTTCTTCCCATATGCTTGGTGGGCTGAGTTACTTGATATTTGTGTTGGCTAGCATGTTTTAGGTGGAATAGTCGAGGTGCGCACAAGCTGGTCAGGGCATTATTATCAGAAAAAAAAAATATAATCAGGAGTACCCAATACCAATTTGAACTTTGATTTAGTGGTATCATAGTGCAGACAGATAGTGCCGAACTGTTAAAACCATTGAAGCTATATGTCTAGGTAAATGTAGGATTGGGCATGCCACCCATTTGCAGAAAGAACCTATAGGTGCTGAAAGGATATGATATAGGTGACGGCGCCAGTTAATAGAATAGGTAAGTATGGTGGTGTTGATTTAATTGCAGCATGAGTGTGGAATTTTAGTCAACGATGAATAACAAGTACATATTTTGTCTGAGTAGGTGATTTCATTCCTTTTTTCTCTCTTTTCAGTTTTTCAAGTTTTTGGGCAAGGGGGTTGGGTTGGGGGCTTTTGTCAAATGAGAGATGATCATAGTGATAGGGTTTGAGAAGGGTATGGACATATCCTTATTGTTTGTCCTGTCGCGGTAATGTTAACCTAATATTTTTTGTGAAATATGAATTGAAGTACCGAGACCGGGGTTCCTCCCCCTTCTCCATTGTATTTGCCTTTTGGGTAGGAAAGAGTTCATGCTGAAACCCCTGCCATCACAAATTTTTAAAAATGCATACCTAAAGTTGATTCAGAGTGAGTATGTGACCTATTAGCCAACCATCAAAACCACTTGTTACAAATAAGATCTTGTTGCATCGAAAGAGATAAATGTTGACGAATCTGGCTATATAGCAGAGAATAGAAGAAAGAAAGAGGGTCCAGTTTCAGATTTTAGGATATACTATAGACATGATTTGGCAGTCCATGTGCTTGCATGCCTCCTGAAGGGTATGAAGGCTGAAGTCTCCCTTTTTACTGTTCTAGTCATTTGAAGGGAATCCTTGTACAACGGTAAAGTTGTCTCCGTGTGGTCTTCAGGTCATGAGTTCTGAGTCATGAAAGCAGGCAAGCAGCCACTAATGCTTCCATCAGGGTAGACTATATAAATATGACCACTTGGGATGCGACCCTTCTCTGGATCTTGGTAACGCAGAATGCTTTGTGCACTTGACTGCCCTCTTTATACTGTTCAAGACATTAAAATCTCATCCTTTCATATTCTTGTTATGTTCTCGATATATTAAGTACACTGAGATCTGTTATTGTCAATTCCAGGCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGA</genome_strand>
        <mrna_strand>CCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTGCGTCCACATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATCGGATTTGCCCGCATATGCAGCTTCAACCGGACGAGTAATTCGATATCGAACTCTCTCTGTAATCACATCTAGCTCTGAGCTGTCTACATACATAGTTAGGGTACATATGTCTAGAAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E389677" ref_strand="+" ref_description="SGN-E389677 [TUS-4-N24](-)">
      <seq>tcacatatagctctgatttgtctacatacaaagttagggtacatatgtttagaaatctgaaagaggttagagttctcaaagtcataggttaaacttaggcttctccccgaccccgactgcccaaatacaatggctgttaatgactgactagcacaaggtgaaaaatagagcatgtagtttaccagttatgcagttgactagagttgcagcaaagttgagtttaacttctatacactgacaagtaaccgtttaatgtaaagtggaatcagtaatctagaaaataagacaggttacaccttttaacattgtgaaaattgtcaacagcgtcagtgtatacaagttaaatccaataacgtttatacagctcttgcagtttacaaggccttcacgcgcagctgtaaaatccctcattatatggcagcccgtgtagagtactttatagtgaaacaagtatcatcatatgtttttatacaacatatgtaaaagtgaagataatgtatgtgcaagaccatggttaaattatacatttctatgttttgttgttttttcttcaattatttgtcagttatgtttgagaaatagagttcagttttacttttggcagctgatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="123637" stop="124850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123937" g_stop="124550" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E389677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123937" e_stop="124550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTTTACAAGGCCTTCACGCGCAGCTGTAAAATCCCTCATTATATGGCAGCCCGTGTAGAGTACTTTATAGTGAAACAAGTATCATCATATGTTTTTATACAACATATGTAAAAGTGAAGATAATGTATGTGCAAGACCATGGTTAAATTATACATTTCTATGTTTTGTTGTTTTTTCTTCAATTATTTGTCAGTTATGTTTGAGAAATAGAGTTCAGTTTTACTTTTGGCAGCTGATGATAC</genome_strand>
        <mrna_strand>TCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTTTACAAGGCCTTCACGCGCAGCTGTAAAATCCCTCATTATATGGCAGCCCGTGTAGAGTACTTTATAGTGAAACAAGTATCATCATATGTTTTTATACAACATATGTAAAAGTGAAGATAATGTATGTGCAAGACCATGGTTAAATTATACATTTCTATGTTTTGTTGTTTTTTCTTCAATTATTTGTCAGTTATGTTTGAGAAATAGAGTTCAGTTTTACTTTTGGCAGCTGATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550273" ref_strand="+" ref_description="SGN-E550273 [TUS-5-N24](-)">
      <seq>atacaaagttagggtacatatgtttagaaatctgaaagaggttagagttctcaaagtcataggttaaacttaggtttctccccgaccccgactgcccaaatacaatggctgttaatgactgactagcacaaggtgaaaaatagagcatgtagtttaccagttatgcagttgactagagttgcagcaaagttgagtttaacttctatacactgacaagtaaccgtttaatgtaaagtggaatcagtaatctagaaaataagacaggttacaccttttaacattgtgaaaattgtcaacagcgtcagtgtatacaagttaaatccaataacgtttatacagctcttgcagtttacaaggccttcacgcgcagctgtaaaatccctcattatatggcagcccgtgtagagtactttatagtgaaacaagtatcatcatatgtttttatacaacatatgtaaaagtgaagataatgtatgtgcaaganccatggttaaattatacatttctatgttttgttgttttttcttcaattatttgtcagttatgtttgagaaatagagttcagttttacttttggcagctgatgataccaaggattttgtatccttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="123662" stop="124870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123962" g_stop="124570" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E550273" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123962" e_stop="124570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTTTACAAGGCCTTCACGCGCAGCTGTAAAATCCCTCATTATATGGCAGCCCGTGTAGAGTACTTTATAGTGAAACAAGTATCATCATATGTTTTTATACAACATATGTAAAAGTGAAGATAATGTATGTGCAAGA-CCATGGTTAAATTATACATTTCTATGTTTTGTTGTTTTTTCTTCAATTATTTGTCAGTTATGTTTGAGAAATAGAGTTCAGTTTTACTTTTGGCAGCTGATGATACCAATGATTTTGTATCCTTGT</genome_strand>
        <mrna_strand>ATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGTTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTTTACAAGGCCTTCACGCGCAGCTGTAAAATCCCTCATTATATGGCAGCCCGTGTAGAGTACTTTATAGTGAAACAAGTATCATCATATGTTTTTATACAACATATGTAAAAGTGAAGATAATGTATGTGCAAGANCCATGGTTAAATTATACATTTCTATGTTTTGTTGTTTTTTCTTCAATTATTTGTCAGTTATGTTTGAGAAATAGAGTTCAGTTTTACTTTTGGCAGCTGATGATACCAAGGATTTTGTATCCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415351" ref_strand="-" ref_description="SGN-E415351 [STM-21-M23]">
      <seq>caaaggctaaagatgaagataatgatgatgcagaaaattttccttgtcaagcatggtggaaaagacgggctgtttcactttttgcccccgcaaaagatgccaacacattttggtccattttcattgctgcagctgttatgggcctcgtggttattggtcagagatggcggctagaaaggtggcaggtattgcaaatgaagtggcagtttggaggccatgatgagataatgaacagggcatttattagtcccatatcccgattgaaagaagtgataattgggagtagtcgtcgtggttcctttatccgagggaatgcttcaacccaacgttaagatgatgatgacgaaaacgaacttgtctgtgtgcaagtcatagcttaggtttgctttccagtatacctagtatttatttatgtttgacggggtttaacgattggatatgttgttatgatggaattgtaatcatggaatttacaagcaagcccttgaggtgaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="127550" stop="20791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127250" g_stop="127027" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127026" i_stop="125998" i_length="1029">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125997" g_stop="125744" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="489" r_length="265" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125743" i_stop="125628" i_length="116">
            <donor d_prob="0.988" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125627" g_stop="125598" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="519" r_length="30" r_score="0.767"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E415351" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415351" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127250" e_stop="127027"/>
          <exon e_start="125997" e_stop="125744"/>
          <exon e_start="125627" e_stop="125598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCTAAAGCTGAAGATAATGATGATGCAGAAAATCTTCCTTGTCAAGCCTGGTGGAAAAGGCGAGCTGTTTCACTTCTTGCCCACGCAAAAGATGCCAACACATTCTGGTCCATTTTCATTGCTGCAGCTGTTATGGGCCTCGTGGTTATTGGTCAGAGATGGCGCCTAGAAAGGTGGCAGATATTGCAAATGAAGTGGCAGTTTGGAGGCCACGATGAGGTATTTATTACAGTTCTACTTGAAAATAGTTCAAACTGGTGTCTTCACTGAGTTGATCATGTTTTACTTTGGGTCTAACATTGTTAGTGTGCTTTAACCAATCAGCTAAGTAGATGATGAAGTGATTAATTAAGAAACTTCTGCTGTAATTCTTTTGATTATTACCTCCCGGAGAAAGAGGTGATTTACACCATTTACATAAATCCTTTTCTTCTTTATGTCCAGCTTCCATGTCATTCATTTCAAATAATAGTGACCCATGAGATATTTGCAGACGCCATATAATAGAATACCTTTTCTACTCTTTCACCCTTTTGTTTCTTCCTAAGAGGTTCATCTTTTCTTTTACTGCATTAATCTGTTATTATTGAGAGATTCTTTCAATACCACTATGATTTTGTAATGCTATAATATTTGTTCTGCTTTCCCCGGAACAGTGCATATTTGTGTTCCCAGGATACGCGTGGATCTGTATTTTACTTGGTCAATCTTTTGAAATAACATCCTCTAGTATGGAGCACATATCTTTAGAGGTGGGATTGGGAATGGAATGAAATGAAATAAAGGAATTTCTTCACCGGCATATGAGTGGCCTTAGGCAGTGCAAGGGAGTATTAGATGATACAAAAGCGAGAGGCATTTAGGGTGAGTTTGTTTTTAGAGGGAATCGTCTAGAGATGGAATAGGAGGGAGATCGGCAGTAAGTGGGAGATACTAAGGCATCTAAGAAGGTAATTCACTTTACTTGGTGCACGTACGAGATGCAATGCTAACAGTAACTCGTGTAAAGAGTGTGAGATTATCCTACTACATGGCAAATTCACGGTCAACTTCATGAGTAGATTTTTCTTATTGAGCTTGTTTCCTGCGGTAAATCAGATAACCTGCGACTTGAAGTTCTTTCTTTGCAGCCTTAAGTTTTTAATTCTTAAGTTGGCTGAAGGAAGTCTAGTTTACTGTATTTCACATCTTTACTCTCTGTTTAGTTGCATCCTTGGATTCACCGATTTGTTTTCCTTGCATCGACAGATAATGAACAGGGCATTTGTTAGTCCCATATCCCGATTGAAAGAAGTGATAATTGGGAGTGGTCGTCGTGGTTCCTTTATTCGAGGGAATGCTTCAACACAACGGTAAGATGATGATGACGAAAACGAACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTTCTTTCCAGTGTACCTAATA-TTATTTATGTTT-A--------AACGATTGGATATGTTGTTATGATGGAGTT-TAATCGTGGAATCTACAAGCAAGCATTTGAGGTAACATTACTGGTAAAAAAAAACAAGTAAATTTTGTCATTAGCAAGTGCTTTATCCCCAATGTGAGACTTCTTGGTGAATCCGAATTTACCTGAACTTTGAAGTGGATATCGGACGTTGAATGAAAAAACAAAAAAAAAAAAACT</genome_strand>
        <mrna_strand>CAAAGGCTAAAGATGAAGATAATGATGATGCAGAAAATTTTCCTTGTCAAGCATGGTGGAAAAGACGGGCTGTTTCACTTTTTGCCCCCGCAAAAGATGCCAACACATTTTGGTCCATTTTCATTGCTGCAGCTGTTATGGGCCTCGTGGTTATTGGTCAGAGATGGCGGCTAGAAAGGTGGCAGGTATTGCAAATGAAGTGGCAGTTTGGAGGCCATGATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGAACAGGGCATTTATTAGTCCCATATCCCGATTGAAAGAAGTGATAATTGGGAGTAGTCGTCGTGGTTCCTTTATCCGAGGGAATGCTTCAACCCAACGTTAAGATGATGATGACGAAAACGAACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTGCTTTCCAGTATACCTAGTATTTATTTATGTTTGACGGGGTTTAACGATTGGATATGTTGTTATGATGGAATTGTAATCATGGAATTTACAAGCAAGCCCTTGAG....................................................................................................................GTGAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224078" ref_strand="+" ref_description="SGN-E224078 [cLEL-19-G8](-)">
      <seq>acttgtctgtgtgcaagtcatagcttaggttttctttccagtggacctaatattatttatgtttaaacgattggatatgttgttatgatggagtttaatcgtggaatctacaagcaagcatttgaggtaacattactggtaaaaaaaaacaagtaaattttgtcattagcaagtgctttatccccaatgtgagacttcttggtgaatccgaatttacctgaactttgaagtggatatcggacgttgaatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="126169" stop="125300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125869" g_stop="125601" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E224078" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125869" e_stop="125601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTTCTTTCCAGTGTACCTAATATTATTTATGTTTAAACGATTGGATATGTTGTTATGATGGAGTTTAATCGTGGAATCTACAAGCAAGCATTTGAGGTAACATTACTGGTAAAAAAAAACAAGTAAATTTTGTCATTAGCAAGTGCTTTATCCCCAATGTGAGACTTCTTGGTGAATCCGAATTTACCTGAACTTTGAAGTGGATATCGGACGTTGAATGAAAAAACAAAAAAAAAAAA</genome_strand>
        <mrna_strand>ACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTTCTTTCCAGTGGACCTAATATTATTTATGTTTAAACGATTGGATATGTTGTTATGATGGAGTTTAATCGTGGAATCTACAAGCAAGCATTTGAGGTAACATTACTGGTAAAAAAAAACAAGTAAATTTTGTCATTAGCAAGTGCTTTATCCCCAATGTGAGACTTCTTGGTGAATCCGAATTTACCTGAACTTTGAAGTGGATATCGGACGTTGAATGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687816" ref_strand="+" ref_description="SGN-E687816 [T3_tus_81_C22]">
      <seq>gttcttttgaaacaattaccggctatcccggtagcctcttcttcgcccaaaaattgtttcactataatcattctcttcgctcgtttctcgagacagtttctaaattttttctcacagtagcagcatagtctatcttcatctctatctgcttattatcacctctaaaatggaaaataatgaggaaggggaggaaacagctccttctagaaatgagtgggaagtcgtatcgctcatacagtcggcatatgctgctgcccctaattcaagacaggttgatcttgttgacgatagtagtgcagagtttgtagctgaaacttctgatccaatgattatgtcggggcactttggctttccaccgaatcaacatgagaatgcgccattgcaaccatctaatgatgagattctgaatgagcagggaagtgaagatgctactcctgaatttgttgctgacaaaggggttgattcagatgcagatgaagtgagtacaaaaactaaaggattgagcacaacggaatttctcggagatcaaatgtttgatgaaaaggttagccttttatccttaagtggtgcagaatttgaagaagatgtagtcttgcaggggtcaagttttgtggacaaagagcagaatttctttagttctactacgtttagttctttcaatagtgaagaacccatgaatgtgtcagcatcaacagaggaaagtaatatgcttgcagaaccagttgaactcgttcaccgggttattgattctggcatatctnatttgcccaaggctaaagctgaagataatgatgatgcagaaaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="130146" stop="126909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129846" g_stop="129684" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129683" i_stop="127855" i_length="1829">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127854" g_stop="127209" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="809" r_length="646" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E687816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129846" e_stop="129684"/>
          <exon e_start="127854" e_stop="127209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTTGAAACAATTACCGGCTATCCCGGTAGCCTCTTCTTCGCCCAAAAATTGTTTCACTATAATCATTCTCTTCGCTCGTTTCTCGAGACAGTTTCTAAATTTTTTCTCACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCTGTAAGTATTCCAATTCGAATTCCATTTCTTTGTTTTTTTTTATTGTTTGATTTTTTTTCTTATGGTTTGTTGATTGGGTTATATGATCATTGACATTTATTCAGTTACTCTGCATTTCTATTGGATATGGTTTTGGATCTCTTTGCATGTGATGATTGAGCAAATTGAATGTTTACAACTTTGTCTACCTGTTTTTCATAGATATGAATTGATGGTAAACAGTTAGAAATACCGGATTCATCTGAACTTTTTTTTTCTTCTAAAATTTGGGGTTGGAAGGGGGGATTACAAGTTGGGGGAATCAAACTCTCGTCAACAAGTGAAAATTCAAGTAGTCAACTAAATGAGATATTGATATCCCCGGTTCATTTGAATCCGGTGTTTTCGATGCTGATTATAAATTTATATTTAAGAATCCCTAAAATTGTACTCCCTCAGTCAATTTTATTTGTCGCTGTGTTTTTAGAAAGTCAATTTGACTAGTTTTCAAAGTTAAATTATATTATATTAATTTAATATTTTAAATAAAAAATTTAAATATTTAAAAATTATATGAAAAGTACTATAACTAGCAATTTTTTGCATATTAATGTTGGTCAAAGTTTTTATAATTTGACTCTAAAAATAGATAACAAATACTAATAGATATGAACACATGACTTTAAAAATACAATGACTTCAATGTTAAAAATAACTCAAAATTTGAACATATATGTGTTAAATTGTGCGTCTGCCTATAAAAAGGGCACATTTTTATTGGCTTAATTATAGTCTTTGATCTTTATGTTTTAATGTGTTTGTGTTGCTTTTCTTTTTAGTTCTAAGAGATGTTTTCCTTTTTCATAATTTTTTAGTTTTAACTTTCCACGTGTTATTTTAAAACCACAAGATTAAAGGACATTTTAATACATTTTACATACCTCTAATGTAAGAAACTAAGAATCAAAATCTTTTTTACCTTCACAAACTCTGTGTCCAATCAAAATCATATACGAGCAATGGACAGCCAGGAATTCTAATAGGGATTCAGAAAAATCTTTAAATTGATATGTCTAGAAGCTTACCTGTTAAGAAGGAATTAACAGTTTATATATATGTACCATAAATAGATAATTTTTACCCTACTTCAGTGGCAGATTATGTACAAGAAAGGGGTTTGAATCTCCTTTTATACTAAACATATAGAATAATATGAATTTTTTGGTTATATGCTGTTGAATCCCCTTGATATGAAGAACAGTCTTTCTTAGTGGTAAAGAGGGTCCAAAAGTTGTTGTAGGTCATAACTTTATATCGCAATTATGACATTCTAGAATGTTTATCATTTCATGGCTCCACCACTATCTACTTTGCATAGTATAATTTCGGATTTTAGGGATTCAATTTAACCCCTTCCTTACCTTTAGCTTGGCCAGCGGTGGCGAGACCTGAACATGGTATCATATTGTAATACCATCTTGAAGCATGTGACCACTTTATTTAAAGCTAATTGGTGTAGAAGTTTTGGTTTAGAGGTATAAATATGTTTCTTTTTAGCAGGGCAAAGTATTTTCCTTGAAAGTTAAAACTTCAGGTTTTGAAATTTGTCGACTTGCTAGGTAAAGCACCAATTGATGTTAAACTAGTGACTGTATATATAGGTGTAAATTTCAAATGTGAAGTCCTGGAAGTTCTTTTTAAACCTTCTCTTTTTTATGTTTCTTGGATAGATTTGATTTTTGAATGTGGTCTCATGCTTTATTAGCTCCTAAGCTCTAATCTCTTATTCTTTTTTGTTTCCCCTCTATTTCTCTCACATGAATGTGAATGTTATCGAGTTTTGATTACAGAAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAGCACAACGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCCTTTTATCCTTAAGTGGTGCAGAATTTGAAGAAGATGTAGTCTTGCAGGGGTCAAGTTTTGTGGACAAAGAGCAGAATTTCTTTAGTTCTACTACGTTTAGTTCTTTCAATAGTGAAGAACCCATGAATGTGTCAGCATCAACAGAGGAAAGTAATATGCTTGCAGAACCAGTTGAACTCGTTCACCGGGTTATTGATTCTGGCATATCTAATTTGCCAAAGGCTAAAGCTGAAGATAATGATGATGCAGAAAATCTTC</genome_strand>
        <mrna_strand>GTTCTTTTGAAACAATTACCGGCTATCCCGGTAGCCTCTTCTTCGCCCAAAAATTGTTTCACTATAATCATTCTCTTCGCTCGTTTCTCGAGACAGTTTCTAAATTTTTTCTCACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAGCACAACGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCCTTTTATCCTTAAGTGGTGCAGAATTTGAAGAAGATGTAGTCTTGCAGGGGTCAAGTTTTGTGGACAAAGAGCAGAATTTCTTTAGTTCTACTACGTTTAGTTCTTTCAATAGTGAAGAACCCATGAATGTGTCAGCATCAACAGAGGAAAGTAATATGCTTGCAGAACCAGTTGAACTCGTTCACCGGGTTATTGATTCTGGCATATCTNATTTGCCCAAGGCTAAAGCTGAAGATAATGATGATGCAGAAAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415350" ref_strand="+" ref_description="SGN-E415350 [STM-21-M23]">
      <seq>cacagtagcagcacagtttatcttcatctctatctgcttaatatcacttcgaaaatggaaaataataaggaaggggaggaaactgctccttctagaaatgagtgggaagtcgtatcgctcacacagtcggcatatgctgctgcccctgattcaagacaggttgatctcgttgatgatagtagtgcagagtttgtagctgaaacttctgatccaatgattatgtcggggcactttggctttccaccaaatcagcatgagaatgcggcattgcaaccatctaatgatgagattctcaatgagaagggaagtgaagatgctactcctgaatttgttgctgacaaaggggttgattcaaatacagatgaagtgaggccaaaaactaaaggattgagcacaatggaatttctcggagatcaaatgtttgatgaaaaggttagcattttatccttaagtggtgcaaaatttgaagaagatgcagtcttgcaggggtcaagtttggtggacaaagagcagaatttctttagttctactacgtttagttctttccatagtgaagaacccatgggtgtgtcagcttccacagaggaaaagcatatgcttgcagaaccagttgaactcgttcaccaggttattgattctggcatatctaatttgccaaaggctaaagatgaagataatgatgatgcagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="130034" stop="126913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129734" g_stop="129684" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129683" i_stop="127855" i_length="1829">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127854" g_stop="127213" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="693" r_length="642" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E415350" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129734" e_stop="129684"/>
          <exon e_start="127854" e_stop="127213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCTGTAAGTATTCCAATTCGAATTCCATTTCTTTGTTTTTTTTTATTGTTTGATTTTTTTTCTTATGGTTTGTTGATTGGGTTATATGATCATTGACATTTATTCAGTTACTCTGCATTTCTATTGGATATGGTTTTGGATCTCTTTGCATGTGATGATTGAGCAAATTGAATGTTTACAACTTTGTCTACCTGTTTTTCATAGATATGAATTGATGGTAAACAGTTAGAAATACCGGATTCATCTGAACTTTTTTTTTCTTCTAAAATTTGGGGTTGGAAGGGGGGATTACAAGTTGGGGGAATCAAACTCTCGTCAACAAGTGAAAATTCAAGTAGTCAACTAAATGAGATATTGATATCCCCGGTTCATTTGAATCCGGTGTTTTCGATGCTGATTATAAATTTATATTTAAGAATCCCTAAAATTGTACTCCCTCAGTCAATTTTATTTGTCGCTGTGTTTTTAGAAAGTCAATTTGACTAGTTTTCAAAGTTAAATTATATTATATTAATTTAATATTTTAAATAAAAAATTTAAATATTTAAAAATTATATGAAAAGTACTATAACTAGCAATTTTTTGCATATTAATGTTGGTCAAAGTTTTTATAATTTGACTCTAAAAATAGATAACAAATACTAATAGATATGAACACATGACTTTAAAAATACAATGACTTCAATGTTAAAAATAACTCAAAATTTGAACATATATGTGTTAAATTGTGCGTCTGCCTATAAAAAGGGCACATTTTTATTGGCTTAATTATAGTCTTTGATCTTTATGTTTTAATGTGTTTGTGTTGCTTTTCTTTTTAGTTCTAAGAGATGTTTTCCTTTTTCATAATTTTTTAGTTTTAACTTTCCACGTGTTATTTTAAAACCACAAGATTAAAGGACATTTTAATACATTTTACATACCTCTAATGTAAGAAACTAAGAATCAAAATCTTTTTTACCTTCACAAACTCTGTGTCCAATCAAAATCATATACGAGCAATGGACAGCCAGGAATTCTAATAGGGATTCAGAAAAATCTTTAAATTGATATGTCTAGAAGCTTACCTGTTAAGAAGGAATTAACAGTTTATATATATGTACCATAAATAGATAATTTTTACCCTACTTCAGTGGCAGATTATGTACAAGAAAGGGGTTTGAATCTCCTTTTATACTAAACATATAGAATAATATGAATTTTTTGGTTATATGCTGTTGAATCCCCTTGATATGAAGAACAGTCTTTCTTAGTGGTAAAGAGGGTCCAAAAGTTGTTGTAGGTCATAACTTTATATCGCAATTATGACATTCTAGAATGTTTATCATTTCATGGCTCCACCACTATCTACTTTGCATAGTATAATTTCGGATTTTAGGGATTCAATTTAACCCCTTCCTTACCTTTAGCTTGGCCAGCGGTGGCGAGACCTGAACATGGTATCATATTGTAATACCATCTTGAAGCATGTGACCACTTTATTTAAAGCTAATTGGTGTAGAAGTTTTGGTTTAGAGGTATAAATATGTTTCTTTTTAGCAGGGCAAAGTATTTTCCTTGAAAGTTAAAACTTCAGGTTTTGAAATTTGTCGACTTGCTAGGTAAAGCACCAATTGATGTTAAACTAGTGACTGTATATATAGGTGTAAATTTCAAATGTGAAGTCCTGGAAGTTCTTTTTAAACCTTCTCTTTTTTATGTTTCTTGGATAGATTTGATTTTTGAATGTGGTCTCATGCTTTATTAGCTCCTAAGCTCTAATCTCTTATTCTTTTTTGTTTCCCCTCTATTTCTCTCACATGAATGTGAATGTTATCGAGTTTTGATTACAGAAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAGCACAACGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCCTTTTATCCTTAAGTGGTGCAGAATTTGAAGAAGATGTAGTCTTGCAGGGGTCAAGTTTTGTGGACAAAGAGCAGAATTTCTTTAGTTCTACTACGTTTAGTTCTTTCAATAGTGAAGAACCCATGAATGTGTCAGCATCAACAGAGGAAAGTAATATGCTTGCAGAACCAGTTGAACTCGTTCACCGGGTTATTGATTCTGGCATATCTAATTTGCCAAAGGCTAAAGCTGAAGATAATGATGATGCAGAAAAT</genome_strand>
        <mrna_strand>CACAGTAGCAGCACAGTTTATCTTCATCTCTATCTGCTTAATATCACTTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAAATAATAAGGAAGGGGAGGAAACTGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCACACAGTCGGCATATGCTGCTGCCCCTGATTCAAGACAGGTTGATCTCGTTGATGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCAAATCAGCATGAGAATGCGGCATTGCAACCATCTAATGATGAGATTCTCAATGAGAAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAAATACAGATGAAGTGAGGCCAAAAACTAAAGGATTGAGCACAATGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCATTTTATCCTTAAGTGGTGCAAAATTTGAAGAAGATGCAGTCTTGCAGGGGTCAAGTTTGGTGGACAAAGAGCAGAATTTCTTTAGTTCTACTACGTTTAGTTCTTTCCATAGTGAAGAACCCATGGGTGTGTCAGCTTCCACAGAGGAAAAGCATATGCTTGCAGAACCAGTTGAACTCGTTCACCAGGTTATTGATTCTGGCATATCTAATTTGCCAAAGGCTAAAGATGAAGATAATGATGATGCAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436863" ref_strand="+" ref_description="SGN-E436863 [cSTA-1-M2]">
      <seq>cacagtaacagcacagtttatcttcatctctatctgcttaatatcacttccaaaatggaaaataataaggaaggggaggaaactgctccttctagaaatgagtgggaagtcgtatcgctcacacagtcggcatatgctgctgcccctgattcaagacaggttgatctcgttgatgatagtagtgcagagtttgtagctgaaacttctgatccaatgattatgtccgggcactttggctttccaccaaatcagcatgagaatgcggcattgcaaccatctaatgatgagattctcaatgagaagggaagtgaagatgctactcctgaattcgttgctgacaaaggggttgattcaaatacacatgaagtgaggccaaaaactaaaggattgagcacaatggaatttctcggagatcaaatgtttgatgaaaaggttagcattttatccttaagtggtgcaaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="130034" stop="127139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129734" g_stop="129684" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129683" i_stop="127855" i_length="1829">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.948" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127854" g_stop="127439" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="467" r_length="416" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E436863" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129734" e_stop="129684"/>
          <exon e_start="127854" e_stop="127439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCTGTAAGTATTCCAATTCGAATTCCATTTCTTTGTTTTTTTTTATTGTTTGATTTTTTTTCTTATGGTTTGTTGATTGGGTTATATGATCATTGACATTTATTCAGTTACTCTGCATTTCTATTGGATATGGTTTTGGATCTCTTTGCATGTGATGATTGAGCAAATTGAATGTTTACAACTTTGTCTACCTGTTTTTCATAGATATGAATTGATGGTAAACAGTTAGAAATACCGGATTCATCTGAACTTTTTTTTTCTTCTAAAATTTGGGGTTGGAAGGGGGGATTACAAGTTGGGGGAATCAAACTCTCGTCAACAAGTGAAAATTCAAGTAGTCAACTAAATGAGATATTGATATCCCCGGTTCATTTGAATCCGGTGTTTTCGATGCTGATTATAAATTTATATTTAAGAATCCCTAAAATTGTACTCCCTCAGTCAATTTTATTTGTCGCTGTGTTTTTAGAAAGTCAATTTGACTAGTTTTCAAAGTTAAATTATATTATATTAATTTAATATTTTAAATAAAAAATTTAAATATTTAAAAATTATATGAAAAGTACTATAACTAGCAATTTTTTGCATATTAATGTTGGTCAAAGTTTTTATAATTTGACTCTAAAAATAGATAACAAATACTAATAGATATGAACACATGACTTTAAAAATACAATGACTTCAATGTTAAAAATAACTCAAAATTTGAACATATATGTGTTAAATTGTGCGTCTGCCTATAAAAAGGGCACATTTTTATTGGCTTAATTATAGTCTTTGATCTTTATGTTTTAATGTGTTTGTGTTGCTTTTCTTTTTAGTTCTAAGAGATGTTTTCCTTTTTCATAATTTTTTAGTTTTAACTTTCCACGTGTTATTTTAAAACCACAAGATTAAAGGACATTTTAATACATTTTACATACCTCTAATGTAAGAAACTAAGAATCAAAATCTTTTTTACCTTCACAAACTCTGTGTCCAATCAAAATCATATACGAGCAATGGACAGCCAGGAATTCTAATAGGGATTCAGAAAAATCTTTAAATTGATATGTCTAGAAGCTTACCTGTTAAGAAGGAATTAACAGTTTATATATATGTACCATAAATAGATAATTTTTACCCTACTTCAGTGGCAGATTATGTACAAGAAAGGGGTTTGAATCTCCTTTTATACTAAACATATAGAATAATATGAATTTTTTGGTTATATGCTGTTGAATCCCCTTGATATGAAGAACAGTCTTTCTTAGTGGTAAAGAGGGTCCAAAAGTTGTTGTAGGTCATAACTTTATATCGCAATTATGACATTCTAGAATGTTTATCATTTCATGGCTCCACCACTATCTACTTTGCATAGTATAATTTCGGATTTTAGGGATTCAATTTAACCCCTTCCTTACCTTTAGCTTGGCCAGCGGTGGCGAGACCTGAACATGGTATCATATTGTAATACCATCTTGAAGCATGTGACCACTTTATTTAAAGCTAATTGGTGTAGAAGTTTTGGTTTAGAGGTATAAATATGTTTCTTTTTAGCAGGGCAAAGTATTTTCCTTGAAAGTTAAAACTTCAGGTTTTGAAATTTGTCGACTTGCTAGGTAAAGCACCAATTGATGTTAAACTAGTGACTGTATATATAGGTGTAAATTTCAAATGTGAAGTCCTGGAAGTTCTTTTTAAACCTTCTCTTTTTTATGTTTCTTGGATAGATTTGATTTTTGAATGTGGTCTCATGCTTTATTAGCTCCTAAGCTCTAATCTCTTATTCTTTTTTGTTTCCCCTCTATTTCTCTCACATGAATGTGAATGTTATCGAGTTTTGATTACAGAAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAGCACAACGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCCTTTTATCCTTAAGTGGTGCAGAATTTGA</genome_strand>
        <mrna_strand>CACAGTAACAGCACAGTTTATCTTCATCTCTATCTGCTTAATATCACTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAAATAATAAGGAAGGGGAGGAAACTGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCACACAGTCGGCATATGCTGCTGCCCCTGATTCAAGACAGGTTGATCTCGTTGATGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCCGGGCACTTTGGCTTTCCACCAAATCAGCATGAGAATGCGGCATTGCAACCATCTAATGATGAGATTCTCAATGAGAAGGGAAGTGAAGATGCTACTCCTGAATTCGTTGCTGACAAAGGGGTTGATTCAAATACACATGAAGTGAGGCCAAAAACTAAAGGATTGAGCACAATGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCATTTTATCCTTAAGTGGTGCAAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326977" ref_strand="+" ref_description="SGN-E326977 [cTOC-18-G1]">
      <seq>ttcttttgaaaaattaccggctatcccggtagcctcttcttcgcccaaaaattgtttcactataatcattctcttcgctcgtttctcgagacagtttctaaattttttctcacagtagcagcatagtctatcttcatctctatctgcttattatcacctctaaaatggaaaataatgaggaaggggaggaaacagctccttctagaaatgagtgggaagtcgtatcgctcatacagtcggcatatgctgctgcccctaattcaagacaggttgatcttgttgacgatagtagtgcagagtttgtagctgaaacttctgatccaatgattatgtcggggcactttggctttccaccgaatcaacatgagaatgcgccattgcaaccatctaatgatgagattctgaatgagcagggaagtgaagatgctactcctgaatttgttgctgancaaggggttgattcagatgcagatgaagtgagtacaaaaactaaaggattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="130145" stop="127214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129845" g_stop="129684" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129683" i_stop="127855" i_length="1829">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127854" g_stop="127514" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="502" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E326977" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129845" e_stop="129684"/>
          <exon e_start="127854" e_stop="127514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGAAACAATTACCGGCTATCCCGGTAGCCTCTTCTTCGCCCAAAAATTGTTTCACTATAATCATTCTCTTCGCTCGTTTCTCGAGACAGTTTCTAAATTTTTTCTCACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCTGTAAGTATTCCAATTCGAATTCCATTTCTTTGTTTTTTTTTATTGTTTGATTTTTTTTCTTATGGTTTGTTGATTGGGTTATATGATCATTGACATTTATTCAGTTACTCTGCATTTCTATTGGATATGGTTTTGGATCTCTTTGCATGTGATGATTGAGCAAATTGAATGTTTACAACTTTGTCTACCTGTTTTTCATAGATATGAATTGATGGTAAACAGTTAGAAATACCGGATTCATCTGAACTTTTTTTTTCTTCTAAAATTTGGGGTTGGAAGGGGGGATTACAAGTTGGGGGAATCAAACTCTCGTCAACAAGTGAAAATTCAAGTAGTCAACTAAATGAGATATTGATATCCCCGGTTCATTTGAATCCGGTGTTTTCGATGCTGATTATAAATTTATATTTAAGAATCCCTAAAATTGTACTCCCTCAGTCAATTTTATTTGTCGCTGTGTTTTTAGAAAGTCAATTTGACTAGTTTTCAAAGTTAAATTATATTATATTAATTTAATATTTTAAATAAAAAATTTAAATATTTAAAAATTATATGAAAAGTACTATAACTAGCAATTTTTTGCATATTAATGTTGGTCAAAGTTTTTATAATTTGACTCTAAAAATAGATAACAAATACTAATAGATATGAACACATGACTTTAAAAATACAATGACTTCAATGTTAAAAATAACTCAAAATTTGAACATATATGTGTTAAATTGTGCGTCTGCCTATAAAAAGGGCACATTTTTATTGGCTTAATTATAGTCTTTGATCTTTATGTTTTAATGTGTTTGTGTTGCTTTTCTTTTTAGTTCTAAGAGATGTTTTCCTTTTTCATAATTTTTTAGTTTTAACTTTCCACGTGTTATTTTAAAACCACAAGATTAAAGGACATTTTAATACATTTTACATACCTCTAATGTAAGAAACTAAGAATCAAAATCTTTTTTACCTTCACAAACTCTGTGTCCAATCAAAATCATATACGAGCAATGGACAGCCAGGAATTCTAATAGGGATTCAGAAAAATCTTTAAATTGATATGTCTAGAAGCTTACCTGTTAAGAAGGAATTAACAGTTTATATATATGTACCATAAATAGATAATTTTTACCCTACTTCAGTGGCAGATTATGTACAAGAAAGGGGTTTGAATCTCCTTTTATACTAAACATATAGAATAATATGAATTTTTTGGTTATATGCTGTTGAATCCCCTTGATATGAAGAACAGTCTTTCTTAGTGGTAAAGAGGGTCCAAAAGTTGTTGTAGGTCATAACTTTATATCGCAATTATGACATTCTAGAATGTTTATCATTTCATGGCTCCACCACTATCTACTTTGCATAGTATAATTTCGGATTTTAGGGATTCAATTTAACCCCTTCCTTACCTTTAGCTTGGCCAGCGGTGGCGAGACCTGAACATGGTATCATATTGTAATACCATCTTGAAGCATGTGACCACTTTATTTAAAGCTAATTGGTGTAGAAGTTTTGGTTTAGAGGTATAAATATGTTTCTTTTTAGCAGGGCAAAGTATTTTCCTTGAAAGTTAAAACTTCAGGTTTTGAAATTTGTCGACTTGCTAGGTAAAGCACCAATTGATGTTAAACTAGTGACTGTATATATAGGTGTAAATTTCAAATGTGAAGTCCTGGAAGTTCTTTTTAAACCTTCTCTTTTTTATGTTTCTTGGATAGATTTGATTTTTGAATGTGGTCTCATGCTTTATTAGCTCCTAAGCTCTAATCTCTTATTCTTTTTTGTTTCCCCTCTATTTCTCTCACATGAATGTGAATGTTATCGAGTTTTGATTACAGAAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAG</genome_strand>
        <mrna_strand>TTCTTTTGAAA-AATTACCGGCTATCCCGGTAGCCTCTTCTTCGCCCAAAAATTGTTTCACTATAATCATTCTCTTCGCTCGTTTCTCGAGACAGTTTCTAAATTTTTTCTCACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGANCAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337437" ref_strand="+" ref_description="SGN-E337437 [cTOE-18-H24]">
      <seq>tttgattggcgggtattgaaccctccattttacatcctgagagccaataactggcacaaaaatgggggatttgtatgccttggattttgatggagttctctgcgatagttgtggagaaagctctctttctgctcttaaggctgctaaagtgagatggcctagtcttttcaatggggtggactcttctttggaagattggattgtagatcagatgcatgtggttagacctgtagtggaaactggaaatgaaaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134516" stop="136065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134816" g_stop="134954" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="220" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135730" g_stop="135765" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="256" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E337437" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134816" e_stop="134954"/>
          <exon e_start="135030" e_stop="135110"/>
          <exon e_start="135730" e_stop="135765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTGGCGGGTATTGAACCCTCCATTTTACATCCTGAGAGCCAATAACTGGCACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTGGTAAAGTTCTTTATTTTTGTTTTATCTTCTCTAAGTATTATATCTTTCTTTGTTCATTTCCTTAGAAAGTAAAATTAAAGGTGAAATAGTGAAAGAAAATTTGTATATGTGAAGGAGATACATTTATGGTAGTGGTGGTTTTGGACAAGCTTTTGCCCCTAATTTAGTGTAGAATGTTTATATATGTTATATAGGTTTTGTTAATTATGCTTCTTTGAAAGAAAACAAAGTCTTTTCTCATGAGATAAGTCACTACTATAAAGGTTGTGGGTGTTGGAATGCACATATCGAGTTCAATGTCGCTGCGTAAGTGATTCATTAAATAATCTCAGCATATTGGGGTTGAACTAGGCTAGTCAGAGGTGGAACCGAGATTTGAACTTTATGAGTTCTAAATTCTAGGATGGTATTAGGTATTAGTAACTGGGTTTTTTTTGTACTTATTTAGTGAATTTTCTTAATAGAAATATTGAGTTTGAACTAAACCTATGTTGAACCTAGACGTTGGCTTCTAGATTTGTGTACACTCACCCTACCTAGACTCCACTTGCGGGAATATATGGGGTATGTTGTTGTTGTTGTTGTTGCAGAAAGTGATCAACCTTCAAACTTTCTGCAGGTTAGACCTGTAGTGGAAACTGGATATGAAAATCTC</genome_strand>
        <mrna_strand>TTTGATTGGCGGGTATTGAACCCTCCATTTTACATCCTGAGAGCCAATAACTGGCACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGACCTGTAGTGGAAACTGGAAATGAAAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337839" ref_strand="+" ref_description="SGN-E337839 [cTOE-14-E17]">
      <seq>ctggcacaaaaatgggggatttgtatgcctcggattttgatggagttctctgcgatagttgtggagaaagctctctttctgctcttaaggctgctaaagtgagatggcctagtcttttcaatggggtggactcttctttggaagattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134566" stop="135390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134866" g_stop="134954" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="150" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E337839" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>150</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134866" e_stop="134954"/>
          <exon e_start="135030" e_stop="135090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGA</genome_strand>
        <mrna_strand>CTGGCACAAAAATGGGGGATTTGTATGCCTCGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336383" ref_strand="+" ref_description="SGN-E336383 [cTOE-10-P2]">
      <seq>acaaaaatgggggatttgtatgccttggattttgatggagttctctgcgatagttgtggagaaagctctctttctgctcttaaggctgctaaagtgagatggcctagtcttttcaatggggtggactcttctttggaagattggattgtagatcagatgcatgtggttagacctgtagtggaaactggatatgaaaatctcttacttgtgaggttgctcctggagtcgataatcccttctattcgcaagtcttcggttgcagagggactaacagttgagggaatacttgagaactggtcaaagattaaacccattataatggcagaatggaatgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134571" stop="136306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134871" g_stop="134954" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="165" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135730" g_stop="135819" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="255" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135820" i_stop="135922" i_length="103">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135923" g_stop="136006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="339" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E336383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134871" e_stop="134954"/>
          <exon e_start="135030" e_stop="135110"/>
          <exon e_start="135730" e_stop="135819"/>
          <exon e_start="135923" e_stop="136006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTGGTAAAGTTCTTTATTTTTGTTTTATCTTCTCTAAGTATTATATCTTTCTTTGTTCATTTCCTTAGAAAGTAAAATTAAAGGTGAAATAGTGAAAGAAAATTTGTATATGTGAAGGAGATACATTTATGGTAGTGGTGGTTTTGGACAAGCTTTTGCCCCTAATTTAGTGTAGAATGTTTATATATGTTATATAGGTTTTGTTAATTATGCTTCTTTGAAAGAAAACAAAGTCTTTTCTCATGAGATAAGTCACTACTATAAAGGTTGTGGGTGTTGGAATGCACATATCGAGTTCAATGTCGCTGCGTAAGTGATTCATTAAATAATCTCAGCATATTGGGGTTGAACTAGGCTAGTCAGAGGTGGAACCGAGATTTGAACTTTATGAGTTCTAAATTCTAGGATGGTATTAGGTATTAGTAACTGGGTTTTTTTTGTACTTATTTAGTGAATTTTCTTAATAGAAATATTGAGTTTGAACTAAACCTATGTTGAACCTAGACGTTGGCTTCTAGATTTGTGTACACTCACCCTACCTAGACTCCACTTGCGGGAATATATGGGGTATGTTGTTGTTGTTGTTGTTGCAGAAAGTGATCAACCTTCAAACTTTCTGCAGGTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCGGTGGGTACACAAAAAAAATAAAAGTGTCTTGGATATGATGACACAAATCTATTCAGGATGTATCATAAACTTCGTCGAGGTGATATCTTTCTTAATGTGATAGGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGAC</genome_strand>
        <mrna_strand>ACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCG.......................................................................................................GTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287912" ref_strand="+" ref_description="SGN-E287912 [cLES-19-N1]">
      <seq>aaaaatgggggatttgtatgccttggattttgatggagttctctgcgatagttgtggagaaagctctctttctgctcttaaggctgctaaagtgagatggcctagtcttttcaatggggtggactcttctttggaagattggattgtagatcagatgcatgtggttagacctgtagtggaaactggatatgaaaatctcttacttgtgaggttgctcctggagtcgataatcccttctattcgcaagtcttcggttgcagagggactaacagttgagggaatacttgagaactggtcaaagattaaacccattataatggcagaatggaatgaagacagagacttccttatagatcttttcggtaaggttagagatgaatggatggacaatgatttggctacttggataggtgcaaacaggttttatcctggagttcctgatgcactgaaatttgcaagttcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134573" stop="137030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134873" g_stop="134954" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="163" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135730" g_stop="135819" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="253" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135820" i_stop="135922" i_length="103">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135923" g_stop="136089" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="420" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136090" i_stop="136683" i_length="594">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136684" g_stop="136730" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="467" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E287912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134873" e_stop="134954"/>
          <exon e_start="135030" e_stop="135110"/>
          <exon e_start="135730" e_stop="135819"/>
          <exon e_start="135923" e_stop="136089"/>
          <exon e_start="136684" e_stop="136730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTGGTAAAGTTCTTTATTTTTGTTTTATCTTCTCTAAGTATTATATCTTTCTTTGTTCATTTCCTTAGAAAGTAAAATTAAAGGTGAAATAGTGAAAGAAAATTTGTATATGTGAAGGAGATACATTTATGGTAGTGGTGGTTTTGGACAAGCTTTTGCCCCTAATTTAGTGTAGAATGTTTATATATGTTATATAGGTTTTGTTAATTATGCTTCTTTGAAAGAAAACAAAGTCTTTTCTCATGAGATAAGTCACTACTATAAAGGTTGTGGGTGTTGGAATGCACATATCGAGTTCAATGTCGCTGCGTAAGTGATTCATTAAATAATCTCAGCATATTGGGGTTGAACTAGGCTAGTCAGAGGTGGAACCGAGATTTGAACTTTATGAGTTCTAAATTCTAGGATGGTATTAGGTATTAGTAACTGGGTTTTTTTTGTACTTATTTAGTGAATTTTCTTAATAGAAATATTGAGTTTGAACTAAACCTATGTTGAACCTAGACGTTGGCTTCTAGATTTGTGTACACTCACCCTACCTAGACTCCACTTGCGGGAATATATGGGGTATGTTGTTGTTGTTGTTGTTGCAGAAAGTGATCAACCTTCAAACTTTCTGCAGGTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCGGTGGGTACACAAAAAAAATAAAAGTGTCTTGGATATGATGACACAAATCTATTCAGGATGTATCATAAACTTCGTCGAGGTGATATCTTTCTTAATGTGATAGGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAGGTAAGTGTAGCTGTTGATTATGCCTGTGTGATCAAATCAACCACTTGAGGGTCCTGACTAGCTCTAATCTCTGGCTAATGTATAATCACTGAACCAACTTAAAGAAAAACAGAGATACAAACTCTATAGACTACCTATACCGAATGATGTACTCCAAAACAAGCTAAATCTATCTGCTTGTCAGTTTCCTAGTTTGATAAGGTTTTAAGACTCCGAGTAGTACGACAACCTATAAGTTGGTCGGTGCTCATCTTAGTGTCATTCTCTAGAATCTCCTAGTTTTTTACGGTCAGAGGCATATCTAAGATTTCAAGAACTTGAGTGCATACTAAAGACAACAGAAAAAAATTAATCAAAGTGGGAATTTGATCCTTGTTCTTCTAGGTAAAACCAAGTGCTTCACTAATCTCTTTAATAGCATGGGTGCCAACAGGTAATATTAGATTGATTCAAGACAATAATTTTGCGGAAAGACTGAGTTCACATGCTTCATAAATTGCACAATAAATTCACCTCTGTTTAAAGATAGTACTCAATCACGTCAAAGAATATACTGTGTTGAAAAATGCTAAAAAGCTTATGCTTTCTCTACAGGTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGC</genome_strand>
        <mrna_strand>AAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCG.......................................................................................................GTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289668" ref_strand="+" ref_description="SGN-E289668 [cLET-4-L12]">
      <seq>aaaaatgggggatttgtatgccttggattttgatggagttctctgcgatagttgtggagaaagctctctttctgctcttaaggctgctaaagtgagatggcctagtcttttcaatggggtggactcttctttggaagattggattgtagatcagatgcatgtggttagacctgtagtggaaactggatatgaaaatctcttacttgtgaggttgctcctggagtcgataatcccttctattcgcaagtcttcggttgcagagggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134573" stop="136123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134873" g_stop="134954" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="163" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135730" g_stop="135819" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="253" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135820" i_stop="135922" i_length="103">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135923" g_stop="135935" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="266" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E289668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134873" e_stop="134954"/>
          <exon e_start="135030" e_stop="135110"/>
          <exon e_start="135730" e_stop="135819"/>
          <exon e_start="135923" e_stop="135935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTGGTAAAGTTCTTTATTTTTGTTTTATCTTCTCTAAGTATTATATCTTTCTTTGTTCATTTCCTTAGAAAGTAAAATTAAAGGTGAAATAGTGAAAGAAAATTTGTATATGTGAAGGAGATACATTTATGGTAGTGGTGGTTTTGGACAAGCTTTTGCCCCTAATTTAGTGTAGAATGTTTATATATGTTATATAGGTTTTGTTAATTATGCTTCTTTGAAAGAAAACAAAGTCTTTTCTCATGAGATAAGTCACTACTATAAAGGTTGTGGGTGTTGGAATGCACATATCGAGTTCAATGTCGCTGCGTAAGTGATTCATTAAATAATCTCAGCATATTGGGGTTGAACTAGGCTAGTCAGAGGTGGAACCGAGATTTGAACTTTATGAGTTCTAAATTCTAGGATGGTATTAGGTATTAGTAACTGGGTTTTTTTTGTACTTATTTAGTGAATTTTCTTAATAGAAATATTGAGTTTGAACTAAACCTATGTTGAACCTAGACGTTGGCTTCTAGATTTGTGTACACTCACCCTACCTAGACTCCACTTGCGGGAATATATGGGGTATGTTGTTGTTGTTGTTGTTGCAGAAAGTGATCAACCTTCAAACTTTCTGCAGGTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCGGTGGGTACACAAAAAAAATAAAAGTGTCTTGGATATGATGACACAAATCTATTCAGGATGTATCATAAACTTCGTCGAGGTGATATCTTTCTTAATGTGATAGGTTGCAGAGGGAC</genome_strand>
        <mrna_strand>AAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCG.......................................................................................................GTTGCAGAGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561880" ref_strand="+" ref_description="SGN-E561880 [19994]">
      <seq>gatttgtatgcctggattttgatggagtctctgcgatagctgtggagaaagctctctttctgctgttaaggctgctaaagtgagatggcctagtcttttcaatggagtggactcatctttggaagattggattgtagatcagatgcatgtggttagacctgtagtggaaactggatatgaaaatctcttacttgtgaggttgctcttggagtcgagaatcccttctattcgcaagtcttcggttgcagagggactaacagttgagggaatacttgagaactgggcaaagattaaacccattataatggcagaatggaatgaagacaaagattttcttatagatcttttcggtaaggttagagatgaatggatggacaatgatttggctacttggataggtgcaaacaggttttatcctggagtacctgatgcactgaaatttgcaagttcaaagctttatatagtcactacgaagcagagccgctttgcagatgcattacttaaagggattgctgggataactattccagctgaaaggatctttggtctcggcacaggacctaaagtaaaagtgcttaagcaacttcaggaaatgccagaacaccagggtctgaaactacactttgtggaagaccgggtgctactttaaagatgtgattaacgagtcgagtggatggatggaactgtatctagggactgggttacattactcaaaggagagggaggaactgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="134583" stop="137809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134883" g_stop="134954" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135030" g_stop="135110" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="151" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135730" g_stop="135819" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="241" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135820" i_stop="135922" i_length="103">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135923" g_stop="136089" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="408" r_length="167" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136090" i_stop="136683" i_length="594">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136684" g_stop="136753" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="478" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136754" i_stop="136948" i_length="195">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="136949" g_stop="137028" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="558" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="137029" i_stop="137146" i_length="118">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.896" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="137147" g_stop="137209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="621" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="137210" i_stop="137310" i_length="101">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="137311" g_stop="137387" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="692" r_length="71" r_score="0.896"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="137388" i_stop="137463" i_length="76">
            <donor d_prob="0.951" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="137464" g_stop="137501" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="728" r_length="36" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E561880" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134883" e_stop="134954"/>
          <exon e_start="135030" e_stop="135110"/>
          <exon e_start="135730" e_stop="135819"/>
          <exon e_start="135923" e_stop="136089"/>
          <exon e_start="136684" e_stop="136753"/>
          <exon e_start="136949" e_stop="137028"/>
          <exon e_start="137147" e_stop="137209"/>
          <exon e_start="137311" e_stop="137387"/>
          <exon e_start="137464" e_stop="137501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAGGTCATTACTTTACTTGCCCCTTTTTGGTTCCCAATTTTCAATTTGTTTTTTGAAAAAAAATTGTTGGTTTTTCAGGCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTGGTAAAGTTCTTTATTTTTGTTTTATCTTCTCTAAGTATTATATCTTTCTTTGTTCATTTCCTTAGAAAGTAAAATTAAAGGTGAAATAGTGAAAGAAAATTTGTATATGTGAAGGAGATACATTTATGGTAGTGGTGGTTTTGGACAAGCTTTTGCCCCTAATTTAGTGTAGAATGTTTATATATGTTATATAGGTTTTGTTAATTATGCTTCTTTGAAAGAAAACAAAGTCTTTTCTCATGAGATAAGTCACTACTATAAAGGTTGTGGGTGTTGGAATGCACATATCGAGTTCAATGTCGCTGCGTAAGTGATTCATTAAATAATCTCAGCATATTGGGGTTGAACTAGGCTAGTCAGAGGTGGAACCGAGATTTGAACTTTATGAGTTCTAAATTCTAGGATGGTATTAGGTATTAGTAACTGGGTTTTTTTTGTACTTATTTAGTGAATTTTCTTAATAGAAATATTGAGTTTGAACTAAACCTATGTTGAACCTAGACGTTGGCTTCTAGATTTGTGTACACTCACCCTACCTAGACTCCACTTGCGGGAATATATGGGGTATGTTGTTGTTGTTGTTGTTGCAGAAAGTGATCAACCTTCAAACTTTCTGCAGGTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCGGTGGGTACACAAAAAAAATAAAAGTGTCTTGGATATGATGACACAAATCTATTCAGGATGTATCATAAACTTCGTCGAGGTGATATCTTTCTTAATGTGATAGGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAGGTAAGTGTAGCTGTTGATTATGCCTGTGTGATCAAATCAACCACTTGAGGGTCCTGACTAGCTCTAATCTCTGGCTAATGTATAATCACTGAACCAACTTAAAGAAAAACAGAGATACAAACTCTATAGACTACCTATACCGAATGATGTACTCCAAAACAAGCTAAATCTATCTGCTTGTCAGTTTCCTAGTTTGATAAGGTTTTAAGACTCCGAGTAGTACGACAACCTATAAGTTGGTCGGTGCTCATCTTAGTGTCATTCTCTAGAATCTCCTAGTTTTTTACGGTCAGAGGCATATCTAAGATTTCAAGAACTTGAGTGCATACTAAAGACAACAGAAAAAAATTAATCAAAGTGGGAATTTGATCCTTGTTCTTCTAGGTAAAACCAAGTGCTTCACTAATCTCTTTAATAGCATGGGTGCCAACAGGTAATATTAGATTGATTCAAGACAATAATTTTGCGGAAAGACTGAGTTCACATGCTTCATAAATTGCACAATAAATTCACCTCTGTTTAAAGATAGTACTCAATCACGTCAAAGAATATACTGTGTTGAAAAATGCTAAAAAGCTTATGCTTTCTCTACAGGTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAGGTTTGTTAGAATGTGCACATTCACCTAAAGATAAAATCTTTAGAACTAATTTATCCTGAAATATTCACCACGCGTACAAGTGATGTTTTGTTTTTCAAAACTTTAGCTTGTTCTTGATGAAAGTGGAATTGGAATCTTAAGAGCCTTGAGTTAAAGCCGTTGAATCTTATATTTGTACTCCGCTGCCATTTGTAGAGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTATGGTCTCGGCACTGGGTGAGTTTACTTCACACGAAGTGTGATTAAGCTAACTGCAATATCAAGAGACATGGTCAATTAGTGTTTACTTATTTAAGCTCATACTCGTGCTCAAGTGAAACTTCTTTTTAATCAGACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCGGAACACCAGGGTCTGAAACTACAGTAAGATTTTATAGCATAAGGACTACTCAAACTTCTTTTGAAAAGCCATTTTGCTTCTACCGCGTGAAATTAAGTGTCTACTTTTTCTGAATATTGCTCAGCTTTGTGGAAGACCGGCTTGCTACTTTAAAGAATGTGATTAAAGAGTCCGAGTTGGATGGATGGAACTTGTATCTAGGTGATTTATCATACTCACTTTGCTTCTTATAGATTTGCAATGTTGTAGTGATTGCTAATCTAATTTCTTGAAGCAGGGGACTGGGGTTACAATACTCAAAAGGAGAGGGAGGAA</genome_strand>
        <mrna_strand>GATTTGTATGCC-TGGATTTTGATGGAG-TCTCTGCGATAGCTGTGGAGAAAGCTCTCTTTCTGCTGTTAAG...........................................................................GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGAGTGGACTCATCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCTTGGAGTCGAGAATCCCTTCTATTCGCAAGTCTTCG.......................................................................................................GTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGGCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAAAGATTTTCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATCCTGGAGTACCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAG...................................................................................................................................................................................................AGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTTTGGTCTCGGCACAGG......................................................................................................................ACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCAGAACACCAGGGTCTGAAACTACA.....................................................................................................CTTTGTGGAAGACCGG-GTGCTACTTTAAAG-ATGTGATTAACGAGT-CGAG-TGGATGGATGGAAC-TGTATCTA-............................................................................GGGACT-GGGTTACATTACTC-AAAGGAGAGGGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287568" ref_strand="+" ref_description="SGN-E287568 [cLES-9-B12]">
      <seq>ggttgcagagggactaacagttgagggaatacttgagaactggtcaaagattaaacccattataatggcagaatggaatgaagacagagacttccttatagatcttttcggtaaggttagagatgaatggatggacaatgatttggctacttggataggtgcaaacaggttttatcctggagttcctgatgcactgaaatttgcaagttcaaagctttatatagtcactacgaagcagagccgctttgcagatgcattacttaaagggattgctgggataactattccagctgaaaggatctatggtctcggcactggacctaaagtaaaagtgcttaagcaacttcaggaaatgccggaacaccagggtctgaaactacactttgtggaagaccggcttgctactttaaagaatgtgattaaagagtccgagttggatggatggaacttgtatctaggggactggggttacaatactcaaaaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="135622" stop="137794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135922" g_stop="136089" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136090" i_stop="136683" i_length="594">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136684" g_stop="136753" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="238" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136754" i_stop="136948" i_length="195">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136949" g_stop="137028" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="318" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137029" i_stop="137146" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137147" g_stop="137209" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="381" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137210" i_stop="137310" i_length="101">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="137311" g_stop="137387" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="458" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="137388" i_stop="137463" i_length="76">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137464" g_stop="137494" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="489" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E287568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135922" e_stop="136089"/>
          <exon e_start="136684" e_stop="136753"/>
          <exon e_start="136949" e_stop="137028"/>
          <exon e_start="137147" e_stop="137209"/>
          <exon e_start="137311" e_stop="137387"/>
          <exon e_start="137464" e_stop="137494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAGGTAAGTGTAGCTGTTGATTATGCCTGTGTGATCAAATCAACCACTTGAGGGTCCTGACTAGCTCTAATCTCTGGCTAATGTATAATCACTGAACCAACTTAAAGAAAAACAGAGATACAAACTCTATAGACTACCTATACCGAATGATGTACTCCAAAACAAGCTAAATCTATCTGCTTGTCAGTTTCCTAGTTTGATAAGGTTTTAAGACTCCGAGTAGTACGACAACCTATAAGTTGGTCGGTGCTCATCTTAGTGTCATTCTCTAGAATCTCCTAGTTTTTTACGGTCAGAGGCATATCTAAGATTTCAAGAACTTGAGTGCATACTAAAGACAACAGAAAAAAATTAATCAAAGTGGGAATTTGATCCTTGTTCTTCTAGGTAAAACCAAGTGCTTCACTAATCTCTTTAATAGCATGGGTGCCAACAGGTAATATTAGATTGATTCAAGACAATAATTTTGCGGAAAGACTGAGTTCACATGCTTCATAAATTGCACAATAAATTCACCTCTGTTTAAAGATAGTACTCAATCACGTCAAAGAATATACTGTGTTGAAAAATGCTAAAAAGCTTATGCTTTCTCTACAGGTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAGGTTTGTTAGAATGTGCACATTCACCTAAAGATAAAATCTTTAGAACTAATTTATCCTGAAATATTCACCACGCGTACAAGTGATGTTTTGTTTTTCAAAACTTTAGCTTGTTCTTGATGAAAGTGGAATTGGAATCTTAAGAGCCTTGAGTTAAAGCCGTTGAATCTTATATTTGTACTCCGCTGCCATTTGTAGAGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTATGGTCTCGGCACTGGGTGAGTTTACTTCACACGAAGTGTGATTAAGCTAACTGCAATATCAAGAGACATGGTCAATTAGTGTTTACTTATTTAAGCTCATACTCGTGCTCAAGTGAAACTTCTTTTTAATCAGACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCGGAACACCAGGGTCTGAAACTACAGTAAGATTTTATAGCATAAGGACTACTCAAACTTCTTTTGAAAAGCCATTTTGCTTCTACCGCGTGAAATTAAGTGTCTACTTTTTCTGAATATTGCTCAGCTTTGTGGAAGACCGGCTTGCTACTTTAAAGAATGTGATTAAAGAGTCCGAGTTGGATGGATGGAACTTGTATCTAGGTGATTTATCATACTCACTTTGCTTCTTATAGATTTGCAATGTTGTAGTGATTGCTAATCTAATTTCTTGAAGCAGGGGACTGGGGTTACAATACTCAAAAGGAGAG</genome_strand>
        <mrna_strand>GGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAG...................................................................................................................................................................................................AGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTATGGTCTCGGCACTGG......................................................................................................................ACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCGGAACACCAGGGTCTGAAACTACA.....................................................................................................CTTTGTGGAAGACCGGCTTGCTACTTTAAAGAATGTGATTAAAGAGTCCGAGTTGGATGGATGGAACTTGTATCTAG............................................................................GGGACTGGGGTTACAATACTCAAAAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700449" ref_strand="+" ref_description="SGN-E700449 [FA13AF04]">
      <seq>gcttaatttctactttctaacatatactatgtacactctaaaaaaaccataaacaaatctcctaactgaaattaaattattgatacaatgaataagcaaattcaaaatgcatcaacaataattatctgctcgttgttgctattgattaatactgaaattggtaatttttaccgatttgtcgatggagcacaacggacgattcaagtttccgatgatctagacgacgttgttgacgatgaagaggacgaggcttggagagaatggggaaggaagaaatcgactagctccgatttcgatccgccgccgacggattttggtacgatgagtccgtcggaaattcaagcggaaatgatgaagcggcagctgggtccggtttttgggtttgttaaactccgacttggaactcgtcggactcaggagaaagttactgaaatagcgatgagatggaccaaactagcaagaactggagcaatcgaggcaaagttcatgagtgttgatgtgagcacaatcatgtttactatggagaaaggtcaagactctatcgagttgaaagagtttttgttggaccaaccagaagcatatgagattaaagtaggggaccaactatttcgaagaccaggagatcctccttttgaagaagtatttgagaagattcagagggagaaaagcaaagtcgatcataccagctcaaagaagaataggcatcatgagttgtaatcaccacaaaaaaactcttgacaactaatttcgatcacctataacaagtattatcaggagggcaggtgtaaatggctggcatcttacatgttcttttttcgacacacacttgacactctgtgcttacaggctatgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="140234" stop="137590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="139934" g_stop="139517" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="139516" i_stop="138746" i_length="771">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="138745" g_stop="138617" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="546" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="138616" i_stop="138199" i_length="418">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138198" g_stop="137890" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="855" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E700449" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="139934" e_stop="139517"/>
          <exon e_start="138745" e_stop="138617"/>
          <exon e_start="138198" e_stop="137890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATTTCTACTTTCTAACATATACTATGTACACTCTAAAAAAAACCATAAACAAATCTCCTAACTGAAATTAAATTATTGATACAATGAATAAGCAAATTCAAAATGCATCAACAATAATTATCTGCTCGTTGTTGCTATTGATTAATACTGAAATTGGTAATTTTTACCGATTTGTCGATGGAGCACAACGGACGATTCAAGTTTCCGATGATCTAGACGACGTTGTTGACGATGAAGAGGACGAGGCTTGGAGAGAATGGGGAAGGAAGAAATCGACTAGCTCCGATTTCGATCCGCCGCCGACGGATTTTGATACGATGAGTCCGTCGGAAATTCAAGCGGAAATGATGAAGCGGCAGCTGGGTCCGGTTTTTGGGTTTGTTAAACTCCGACTTGGAACTCGTCGGACTCAGGTATCTCTTCCTTCACCTTTTTTAGTGTAGATTCTTATTAATGTGATGAGTAGTGACTCGCTAAAATTTATTTTCCTAACTAATAGCATTGAATCTAGTGAAATAGTTGTCTTGCTGAAAGAGTAATCTACCATTTGCACTTCCAATTTCAAGCTAGTTATACCCATTTTGCAGTGGTAGATTTATATGTGAAATTTTCTGAAATATATGGTGTTTTGAACCCACATTTACATTGAATTTTGAAATACTACTATAAGATTAAATGTTGTATCCGCCTCTAGTCATTTGGATCTATTCAGGTTATAAGTAGAATGAGAAAATTAGTTGACAAACTGGAGAATGTGGTAAGATCTGAAAAACTCTTTTCTGTGAAGTTTCAGGTCTGGGGTGGATGCAATTTGTTGGTTCTGGGTTCATATGAACCTAGTACTTTCGATGTGGAGTATAAATTTATACATATGAACTCATAACCTTTAAAAAGATTTGTCCAATTTAGAGATTCTAAAGAGTAAAGATGGAACTCAATAGGCTTAAATCCGTGTTCCGCCTTTGAGAAAAGATAATCTGTATTAAAAGGCGATTTTAGTATTACAATGAAGTGAACCTAGATAGAAGGGAATAAATGTAGAGGATTACTAAAGCTGACCTCAATTGATTTGGATTGAACCATAGTTGACTGAATGGAAGAGTGTATAGAGTTTGCAAAGGAGGCTTGGGCAGGATTGCAAAGTAAATTGTATGGTATTATTAACTGAGATTACTTGTTTACAGGAGAAAGTTACTGAAATAGCGATGAGATGGACCAAACTAGCAAGAACTGGAGCAATCGAGGCAAAGTTCATGAGTGTTGATGTGAGCACAATCATGTTTACTATGGAGAAAGGTCAAGACTCTATCGAGGTTTGTCTTACTTCCAAAATATGATGTTTTATTCTATAAGTACTAGCTTTACCTATTGATCCTTGAAACAAAGAGTTGAATATCAGAACACTTTGTATAAAGGTTGTTGTGTTTCACCACCTCCCATATATCCTTCACAGTCAATTAAGGTTGTTATTGCAAAGCCACAACTAAGGTGCACAGACCTTACCGTCTAAGCTGTTGATACTTTCGTTTCACTGGGTCCATGTTTGAGACAGCAAGGCAGTCGGTACACCATTCATATCAAGGCTCTGGTTTTGCTCTAAACTTTTAGCCTTCCAAATGCACCTTTTATCGATGGTTCTTTTTCATCCTTTGGGACGATATGTTAGTTGGTATTTGATAGAATCACAAGTTCTGTACTAGAAAATTGAGATTTTATTACTTTATTTTGCAGTTGAAAGAGTTTTTGTTGGACCAACCAGAAGCATATGAGATTAAAGTAGGGGACCAACTATTTCGAAGACCAGGAGATCCTCCTTTTGAAGAAGTATTTGAGAAGATTCAGAGGGAGAAAAGCAAAGTCGATCATACCAGCTCAAAGAAGAATAGGCATCATGAGTTGTAATCACCACAAAAAAACTCTTGACAACTAATTTCGATCACCTATAACAAGTATTATCAGGAGGGCAGGTGTAAATGGCTGGCATCTTACATGTTCTTTTTTCGACACACACTTGACACTCTGTGCTTACAGGCTATGCAT</genome_strand>
        <mrna_strand>GCTTAATTTCTACTTTCTAACATATACTATGTACACTCT-AAAAAAACCATAAACAAATCTCCTAACTGAAATTAAATTATTGATACAATGAATAAGCAAATTCAAAATGCATCAACAATAATTATCTGCTCGTTGTTGCTATTGATTAATACTGAAATTGGTAATTTTTACCGATTTGTCGATGGAGCACAACGGACGATTCAAGTTTCCGATGATCTAGACGACGTTGTTGACGATGAAGAGGACGAGGCTTGGAGAGAATGGGGAAGGAAGAAATCGACTAGCTCCGATTTCGATCCGCCGCCGACGGATTTTGGTACGATGAGTCCGTCGGAAATTCAAGCGGAAATGATGAAGCGGCAGCTGGGTCCGGTTTTTGGGTTTGTTAAACTCCGACTTGGAACTCGTCGGACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGTTACTGAAATAGCGATGAGATGGACCAAACTAGCAAGAACTGGAGCAATCGAGGCAAAGTTCATGAGTGTTGATGTGAGCACAATCATGTTTACTATGGAGAAAGGTCAAGACTCTATCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGAGTTTTTGTTGGACCAACCAGAAGCATATGAGATTAAAGTAGGGGACCAACTATTTCGAAGACCAGGAGATCCTCCTTTTGAAGAAGTATTTGAGAAGATTCAGAGGGAGAAAAGCAAAGTCGATCATACCAGCTCAAAGAAGAATAGGCATCATGAGTTGTAATCACCACAAAAAAACTCTTGACAACTAATTTCGATCACCTATAACAAGTATTATCAGGAGGGCAGGTGTAAATGGCTGGCATCTTACATGTTCTTTTTTCGACACACACTTGACACTCTGTGCTTACAGGCTATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="167288" stop="166389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="166988" g_stop="166689" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="166988" e_stop="166689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCT-AAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATTAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGATGCAACTACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTAAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="167714" stop="166630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="167414" g_stop="166930" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="167414" e_stop="166930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATTACCACCGCTCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGAAAAGCCGGTATCTTTAAACCCAAAATATTTCAGGCTACCATACTACCAAATACACCCCTTCTCGATAGTGAACCAACAACCTACTCTGTTGCCTCCAAAAATGCTTATTGGCGTCATGCTATGGATGACGATTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGATACAAGGCTCGTTTGGTTGCT-AAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="176267" stop="177152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="176567" g_stop="176852" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="176567" e_stop="176852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGAGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTTGTGCTATTACTTGGGTCAAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGGTTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="176627" stop="177779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="176926" g_stop="177479" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="176926" e_stop="177479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGCACAGAATAAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGACAGATACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATAGATGCCTCATTGGGAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCGTAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTCGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAAAGCCAAAATGTGGTGGCGGTCACATGTGGAGTGTCAATCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="178877" stop="177947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178577" g_stop="178247" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178577" e_stop="178247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAGAGCCAAGTCATACCCATAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCATGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATAAAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="177977" stop="179237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178277" g_stop="178937" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178277" e_stop="178937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCATGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTATGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCGTCTCCTTTCTTCATGCTAAGAGAACAGTTAGTAAGGGTTGTTTATCTTTCTTGGCACGCCTCCGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCACGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCACTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTGTT-CTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="179796" stop="178520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="179496" g_stop="178819" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="179496" e_stop="178819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCT-ACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTTCTCCTCATGTTCCTTCTTGCTCTT-GAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGTAGCAGGGGCATTCGTAAGCCCAAAAGACATTACTAAGAACTCATAATGCCCATACTTGGTCCGAAAAGCAGTCTTGGGCACATCTGCTGCCCGTATTTTTAATTGATGATAACCAGATCTCAAGTCGATTTTTGAGAAGGTACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCAGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="181348" stop="180571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="181048" g_stop="180872" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="181048" e_stop="180872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATACAATGCCTCGAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAGAACTCTGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCATTTGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="207093" stop="20784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="206793" g_stop="206315" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="206314" i_stop="205013" i_length="1302">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="205012" g_stop="204929" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="562" r_length="84" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="206793" e_stop="206315"/>
          <exon e_start="205012" e_stop="204929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTTACCTTAGTGATTGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTCTAAATGTTTATGGCATGAACGTTTGGGACACGTTAATAACAAAACCTTGAGAAAACTGATTAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCATAATGTCAAATTTGTGTTGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGGAATTCAAATTTTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAGCAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGAAAAAATCGAACTTTAAAAGAAATGATGAATGCATTACTTATAAGTTCAGGTTTACCACAGAACTTGTGGGGGGAAGCTATCCTTACATCAAATCAGATACTTAATAGAGTGCCTCACTCAAAGACAAATGTAATTCCATATGAGAAATGGAAAGGTAGAAAACTCAATTTGAAATATTTCAAAGTGTGGGGGTGTCTAGCCAAAGTCCAAGTTCCTATACCTAAGAGGGTAAAAATAGAACCTAAGATTGTGGATTGTGTATTCATTGGATATGCCACAAACAGTAAGGCATGTCGTTTTTTGGTTCATAAGTCAGAACATCCGGATATTCATGATAATACGGTAATGGAATCAGATAGTGCTGAATTTTTTGAAACATATCTATCCGTATAAAACTAGACTTGAGTCATCTAGTGGGGGATCTAAACAACCCAGAGAAGAACCAAAAGAGAATGAACAAAATGAAGAAAGTCCAAGACGCAGTAAACGTCAAAAGACATGTACTTCATTTGGATCAGATTTTGTAACATCTCTTCTTGAAAGTGAGCCTCAAACATTCAAGGAAGCACTCTTGGAAGGAGGCTGTTAATAGTGAAATTGAATCAATCTTAAGCAATCATACTTGGGAGTTGGTTGATCTTCCTCCAGGGAACAAACCGTTGGGTTCAAAATGGATCTTTAAAAGGAAGATGAAAGACGATGGAACTATTGACAAATATAAAGCAAGACTTGTTGTCAAAGGTTTTAGACAAAAAGAAAGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGAC-TACCTTAGTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGCTTCTTATTAAAAAAAAAAAAAAAAAAAGACTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="207241" stop="95576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="206900" g_stop="206331" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="636" r_length="573" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="206330" i_stop="205012" i_length="1319">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="205011" g_stop="204930" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="718" r_length="82" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="206900" e_stop="206331"/>
          <exon e_start="205011" e_stop="204930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATTTGGTCCAAAAAGCAATCCTCCT---AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTTACCTTAGTGATTGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTCTAAATGTTTATGGCATGAACGTTTGGGACACGTTAATAACAAAACCTTGAGAAAACTGATTAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCATAATGTCAAATTTGTGTTGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGGAATTCAAATTTTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAGCAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGAAAAAATCGAACTTTAAAAGAAATGATGAATGCATTACTTATAAGTTCAGGTTTACCACAGAACTTGTGGGGGGAAGCTATCCTTACATCAAATCAGATACTTAATAGAGTGCCTCACTCAAAGACAAATGTAATTCCATATGAGAAATGGAAAGGTAGAAAACTCAATTTGAAATATTTCAAAGTGTGGGGGTGTCTAGCCAAAGTCCAAGTTCCTATACCTAAGAGGGTAAAAATAGAACCTAAGATTGTGGATTGTGTATTCATTGGATATGCCACAAACAGTAAGGCATGTCGTTTTTTGGTTCATAAGTCAGAACATCCGGATATTCATGATAATACGGTAATGGAATCAGATAGTGCTGAATTTTTTGAAACATATCTATCCGTATAAAACTAGACTTGAGTCATCTAGTGGGGGATCTAAACAACCCAGAGAAGAACCAAAAGAGAATGAACAAAATGAAGAAAGTCCAAGACGCAGTAAACGTCAAAAGACATGTACTTCATTTGGATCAGATTTTGTAACATCTCTTCTTGAAAGTGAGCCTCAAACATTCAAGGAAGCACTCTTGGAAGGAGGCTGTTAATAGTGAAATTGAATCAATCTTAAGCAATCATACTTGGGAGTTGGTTGATCTTCCTCCAGGGAACAAACCGTTGGGTTCAAAATGGATCTTTAAAAGGAAGATGAAAGACGATGGAACTATTGACAAATATAAAGCAAGACTTGTTGTCAAAGGTTTTAGACAAAAAGAAAGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="-" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>aagaaattcaatggaaactgctttaattgtggtaaacatggtcataggggtaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="207117" stop="107710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="206817" g_stop="206315" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="206314" i_stop="205013" i_length="1302">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="205012" g_stop="204930" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="585" r_length="83" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E395006" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="206817" e_stop="206315"/>
          <exon e_start="205012" e_stop="204930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTTACCTTAGTGATTGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTCTAAATGTTTATGGCATGAACGTTTGGGACACGTTAATAACAAAACCTTGAGAAAACTGATTAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCATAATGTCAAATTTGTGTTGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGGAATTCAAATTTTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAGCAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGAAAAAATCGAACTTTAAAAGAAATGATGAATGCATTACTTATAAGTTCAGGTTTACCACAGAACTTGTGGGGGGAAGCTATCCTTACATCAAATCAGATACTTAATAGAGTGCCTCACTCAAAGACAAATGTAATTCCATATGAGAAATGGAAAGGTAGAAAACTCAATTTGAAATATTTCAAAGTGTGGGGGTGTCTAGCCAAAGTCCAAGTTCCTATACCTAAGAGGGTAAAAATAGAACCTAAGATTGTGGATTGTGTATTCATTGGATATGCCACAAACAGTAAGGCATGTCGTTTTTTGGTTCATAAGTCAGAACATCCGGATATTCATGATAATACGGTAATGGAATCAGATAGTGCTGAATTTTTTGAAACATATCTATCCGTATAAAACTAGACTTGAGTCATCTAGTGGGGGATCTAAACAACCCAGAGAAGAACCAAAAGAGAATGAACAAAATGAAGAAAGTCCAAGACGCAGTAAACGTCAAAAGACATGTACTTCATTTGGATCAGATTTTGTAACATCTCTTCTTGAAAGTGAGCCTCAAACATTCAAGGAAGCACTCTTGGAAGGAGGCTGTTAATAGTGAAATTGAATCAATCTTAAGCAATCATACTTGGGAGTTGGTTGATCTTCCTCCAGGGAACAAACCGTTGGGTTCAAAATGGATCTTTAAAAGGAAGATGAAAGACGATGGAACTATTGACAAATATAAAGCAAGACTTGTTGTCAAAGGTTTTAGACAAAAAGAAAGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGGTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGAC-TACCTTAGTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTTTAAAAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="207061" stop="20790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="206761" g_stop="206315" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="206314" i_stop="205013" i_length="1302">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="205012" g_stop="204935" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="524" r_length="78" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="206761" e_stop="206315"/>
          <exon e_start="205012" e_stop="204935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTTACCTTAGTGATTGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTACTTGCTTGAGTCTAAATGTTTATGGCATGAACGTTTGGGACACGTTAATAACAAAACCTTGAGAAAACTGATTAACTTAAATATTTTGCCAAAATTTGAGTGCAATAAATCATAATGTCAAATTTGTGTTGAATCTAAGTATGCTAAGCATTCTTATAAATCTGTTGAAAGGAATTCAAATTTTTTAGAATTGATTCACACTGATATTTGTGACATGAAGTCAACACCATCACGTGGTGGGAAAAAGTATTTCATAACTTTTATTGACGATTGCACTAGATATTGTTATGTCTATTTGCTAAATAGTAAGGATGAAGCAATAGATGCATTTAGGCAATATAAAACTGAAGTTGAAAATCAGTTAGATAAAAAGATCAAAATGATCAGAAGTGATAGAGGTGGAGAATATGAATCTCCATTTGCAGAAATATGTTTAGAAAATGGAATAATCCATCAAACTACTGCTCCCTACACTCCTCAGTCTAATGGAATTGCAGAAAGAAAAAATCGAACTTTAAAAGAAATGATGAATGCATTACTTATAAGTTCAGGTTTACCACAGAACTTGTGGGGGGAAGCTATCCTTACATCAAATCAGATACTTAATAGAGTGCCTCACTCAAAGACAAATGTAATTCCATATGAGAAATGGAAAGGTAGAAAACTCAATTTGAAATATTTCAAAGTGTGGGGGTGTCTAGCCAAAGTCCAAGTTCCTATACCTAAGAGGGTAAAAATAGAACCTAAGATTGTGGATTGTGTATTCATTGGATATGCCACAAACAGTAAGGCATGTCGTTTTTTGGTTCATAAGTCAGAACATCCGGATATTCATGATAATACGGTAATGGAATCAGATAGTGCTGAATTTTTTGAAACATATCTATCCGTATAAAACTAGACTTGAGTCATCTAGTGGGGGATCTAAACAACCCAGAGAAGAACCAAAAGAGAATGAACAAAATGAAGAAAGTCCAAGACGCAGTAAACGTCAAAAGACATGTACTTCATTTGGATCAGATTTTGTAACATCTCTTCTTGAAAGTGAGCCTCAAACATTCAAGGAAGCACTCTTGGAAGGAGGCTGTTAATAGTGAAATTGAATCAATCTTAAGCAATCATACTTGGGAGTTGGTTGATCTTCCTCCAGGGAACAAACCGTTGGGTTCAAAATGGATCTTTAAAAGGAAGATGAAAGACGATGGAACTATTGACAAATATAAAGCAAGACTTGTTGTCAAAGGTTTTAGACAAAAAGAAAGTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGAC-TACCTTAGTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="207859" stop="206653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="207559" g_stop="206953" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="207559" e_stop="206953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208038" stop="206668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="207738" g_stop="206968" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="207738" e_stop="206968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208071" stop="206743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="207772" g_stop="207043" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="207772" e_stop="207043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAAGGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208480" stop="206776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="208180" g_stop="207983" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="207982" i_stop="207575" i_length="408">
            <donor d_prob="0.695" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="207574" g_stop="207080" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="670" r_length="481" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="208180" e_stop="207983"/>
          <exon e_start="207574" e_stop="207080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATG</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGATTTTCAAA-CACTGAAA----ATTTTCCTTCTCNGTA-TTATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGAAC--AACAA----T---GC----CAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208183" stop="206975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="207883" g_stop="207275" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="207883" e_stop="207275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208071" stop="207029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="207772" g_stop="207329" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="207772" e_stop="207329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208328" stop="207036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="208028" g_stop="207336" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="208028" e_stop="207336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACC-----T--AG----GG-ATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="208461" stop="207633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="208162" g_stop="207933" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="208162" e_stop="207933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAA---ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431054" ref_strand="+" ref_description="SGN-E431054 [STM-54-H16]">
      <seq>aatgagtagaatcaattgtatgctttggagagtgacactgacagttcattgatacatcaatcctcacactctgagaatggcctatcactccgacagttcgtcttccatggttcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatgtttagtggtcgtcacactatctgccaggagtcagagaaggacttgtcatttgtggatttcagctatgcatgtctgaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggctttacatgtatgtgtggattaaaatttaagcacataaatattattttcaagcccatctttactgtcaagttgcaaccttagtgatttcatcttgcctagggaagatgtgaatttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttctgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217005" stop="228564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217304" g_stop="217426" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="319" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="225239" i_stop="227036" i_length="1798">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="227037" g_stop="227215" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="499" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="558" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="228241" g_stop="228264" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="582" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E431054" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217304" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="227037" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGTAGAATCTATTTTTTGCTTAGGAGAGTGACAGTG--AGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACAT-AATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAAC</genome_strand>
        <mrna_strand>AATGAGTAGAATCAATTGTATGCTTTGGAGAGTGACACTGACAGTTCATTGATACATCAATCCTCACACTCTGAGAATGGCCTATCACTCCGACAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATACCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCACACTATCTGCCAGGAGTCAGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTCTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCAATGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463213" ref_strand="+" ref_description="SGN-E463213 [cPRO-13-P2]">
      <seq>aatgagtagaatcaattgtatgctttggagagtgacactgacagtccattgatacatcaatcctcacactctgagaatggcctatcactccgacagttcgtcttccatggttcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatgtttagtggtcgtcacactatctgccaggagtcagagaaggacttgtcatttgtggatttcagctatgcatgtctgaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggctttacatgtatgtgtggattaaaatttaagcacataaatattattttcaagcccatctttactgtcaagttgcaaccttagtgatttcatcttgcctagggaagatgtgaatttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217005" stop="227456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217304" g_stop="217426" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="235" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="319" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="225239" i_stop="227036" i_length="1798">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="227037" g_stop="227156" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="440" r_length="121" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E463213" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217304" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="227037" e_stop="227156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGTAGAATCTATTTTTTGCTTAGGAGAGTGACAGTG--AGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACAT-AATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGG</genome_strand>
        <mrna_strand>AATGAGTAGAATCAATTGTATGCTTTGGAGAGTGACACTGACAGTCCATTGATACATCAATCCTCACACTCTGAGAATGGCCTATCACTCCGACAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATACCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCACACTATCTGCCAGGAGTCAGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560954" ref_strand="+" ref_description="SGN-E560954 [20689]">
      <seq>gcacgaggctgacagtcattgatacatcaatcctcaaaactctgagaatggctatcaccccgacagttcgtcttccatggccgcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatggtttagtggtcgtcacactatcttccaggagtcagagaagggacacatattcattgacagggacggaaacgcactttcgccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcagctccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217030" stop="223605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217331" g_stop="217426" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.82"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="207" r_length="111" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="343" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="499" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E560954" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217331" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGACAGTGAGTCCATTGAATCATCAATCCTCAA-ACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGG-TTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTAT-GTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAA-GCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG</genome_strand>
        <mrna_strand>GCACGAGGCTGACAGT-CATTGATACATCAATCCTCAAAACTCTGAGAATGG-CTATCACCCCGACAGTTCGTCTTCCATGGCCGCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATACCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGGTTTAGTGGTCGTCACACTATCTTCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCATTGACAGGGACGGAAACGCACTTTCGCCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAGCTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579703" ref_strand="+" ref_description="SGN-E579703 [86834]">
      <seq>gtgacactgacagtccattgatacatcaatcctcacactctgagaatggcctatcactccgacagttcgtcttccatggttcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatgtttagtggtcgtcacactatctgccaggagtcagagaagggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcaaatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcatttgtggatttcagctatgcatgtctgaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcaggatgtgaatttactggagcaaatcttcgtggagctgtataaggctggtgctaatcttcaacagtgcacatttcacaagatgcttgtctaataggctgtagcttctgtggggcggatcttcgttctgctcacctacagacagctgatcttaccgatgccaacctcgaaggagctaatcttgaaggtgcaaatctgaagggtgcgacgtttaaccaatgcaacatctgaagggtgctacacctttcaaagagcttatcttcggcatgtgaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217033" stop="236132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217333" g_stop="217426" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="204" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="223144" i_length="4937">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="360" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="444" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="225239" i_stop="227141" i_length="1903">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="0.319" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="227142" g_stop="227215" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="521" r_length="77" r_score="0.878"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="0.83"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="580" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="228241" g_stop="228300" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="640" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="235760" g_stop="235832" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="717" r_length="77" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E579703" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217333" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="227142" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228300"/>
          <exon e_start="235760" e_stop="235832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGACAGTGAGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTA-GCTGGTGCTAATCTTCAA-AGTGCAAATTT-ACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAGGTAAAAGTTATGCATGTAATACTATTGCCTAAATTCACCCAAGGTGGAATAATATTGGATACAGAAGCAGCTATCAAAACTAAGTTAAAAGTATTACTCTGGTGAACATGCGACTTTTGAACTATTTTTATTGCTCGTACTTCACTCATCCAACCTTAATTTATTTGTGCTTCTGCTAAAATCCTGCAAAGTTTCTTTAGAAGTACTTACCCAGAGGCCAAGACTGTTAAAATATTTTTATTGCTTGTAATTCACTGGAAATTATCTCAAATGATCATGTCATTTCATTTCTGTTATTGTGTTAAGATTTCTGCTAATCTTACTAACTGTTCTTTTCACAGTAATTGTTAAGTACTTTATGTAAGTCTTGCTTCTTTCTTGGACCACAGTTTCTTGCAACAGGAACAAGTGACCTTCCGACAGCCTAATATACCTAATTCTTCTCCGCACAGCTTCAAAATGCTTTTTTGACACAATGAAAACATTTTAGATATTATCCTAACACAATAATGCATGGCCTTCTAATCGCCTCAAAAGCGATTCCTCCTCGTGTATTATGCTAGTTATCTTGGCCTGACCTGCAGAGCTGAAAAATTGAATGGTGAAGGGTCTAACCACTAGGGGATAAAGTTTTACAAGGCACAAAATGTTTAACTTGAACTGACAAGCATACCCATACACCACCTTATAAGGTGTGCAACCCTCCATCCCTTCTGATGTGTGATGGGTTCTACATTACTTGCTTACCGATGTCACCCTAACCTTCTTTGTCTTCACCTGGACTGGCCATTCCATTGTTTTATAAGGCACTTGCTAAACCCGGTTTACTATACCACCTAAAGTATAATGCAATAAGATTTCTTCTTTCAGTCTCAAACCAATAGGTTCTGCCAATCCCCTCCAATAACTTGAGTAAACGAGTTTCCCAAACAGTCAGAAAGATATCTCTCACCAATAATCAAATTTTTATTGAACTTTGCAGTCAAGGATCGCTCTCTCTCTCTTTCTCCTTTTTTTCTTTGGGATCTATAAATAGTAAGTGCAGTCATTAATAAAGGGGCACCAAGGGTTTTCAGATCCTTCTATATCGTCCAAAAATACAAATAATAATAAAAAGTGAGTTCTATGAATGAGAAAACGACCAAATTAGTCGTTGATGTATACGGGTTGAATTATTTTGGTCCTTTATTGATAGTGTCAATTGAGTAAGCCTAAAGAGCAAAGATGATTGAGAATCACTCTTGAACAGCTGAACTCAAATCTTCCAAGGAAGAAGATGAATTGAGAGAGAATTTCTTATTGATCTGCAGATTGATTCTTTACAATGAACTCAACGAGTATATGTAAGAAAGGACAACTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACAAATCACGTGTCCCACTTAACAGACTCAAATACAAAATTAACAACTAATAAGATTTCTAATCAATTGACATGTAACAATATTCCCCCTCTTCATCAAATCCTTGAGCTCAAGGATTAAAATGTGGAAACCGCTGGGTGAAAGACTGATAATCCTCTCAAGTGCTATCGTATTCAGACGCATTGAACCATTTAACTAATTACTGAGTAGCAGGCCTGCCATGCTTCTTGATAATCCTCCTATCAAGAACTGCTTCTGGTGTCAAGAGGATGTGACCAGCATCAACATGAACCTCAGGGAGGGTAGCAGAAACTATATGGGACCCTAACTTCTTTTTGAGCTGAGAAATATGAAAAGTAGGGTGAATTCGAGAGGCAGGGGGTAATTGGAGAGTGTACACAACTGAACCCACCCTTGCTATGATTCGAAAAGGACCAAAAAACTTGGCTGAAAGTTTTTGGAAACTATGAGATTTCAATGATGTCTGTCTTTAAGGATGTAACTTTATGTAGACCCAATCCCCAATTACATAAGACCTATCAGTTCTTCCTTTGTCGGCCTGAGATTTCATTCGACTTCGGGTCTAGCTAAATGAGACTTTAGGCATCTCAAGGTAGCCTCGCTAGCTTGTTAGCATGTCAAGTTGGGAGTCGAAAGGCATGTATGGAAGGAGCGGAGGAGGTGTTTGACCATAATCAACAACATAGGGTGTCATGTTAATAGCAGAATGAAATGAAGTGTTGTACCACCATTCAGCCAGAGCCAACCATTGGGGCCATTCCCTAGGTTTCTCAAACATCATGCACCTGAGATAACACTCAAGACATCTATTAACAACTTCAGTCTGCCATCTGTTTGAGGGTAGTATGCAGAAGTGAGCAAGGTAACCTTCTGCAATTTGAACAATTCTTTCCAAACCTGCTTGTAAATACTGGATCTCTATCAGAGACTATAGTTTTTGGCATGCCATGGAGTTTGAATACCCCATTCATGAAAGCCTGAGCTACCTCCACTGCAGTATAAGGGTGCCATTAAGTGAGCTGCCTTGTTCTACCTGTCAACTACCACAAAAATAACCTCATGTCCATCGACCTCAAGGAAGACCCTCTATAAAATCCATCGAAATATCTTGCCACACTTGTTTGGAATTGTTAGAGGTTGAAGAAGGTCCGCTATGCTACATTTTCACCCTTGCACCTCTGACAAACATCACAACACCTAACATAGGCATAGACATCCTGTTTCATTTTCTTCCGGTAAAAATCCTGTTAAAGCCTCTGTAAGGTGGCTGTTATACCAGAATGACTTCCAGTAGCACTGTTATGGTATAAAGCTAATCTTTCCTCACTGTAGCCACAGAGCCTACCATCATCTTACTTTTTCTACTCAAGATCATAGCATGATAACTGTAGTAAGGTTTAGTAACAACTGTAGTCTGAATGGAAGTGATTAGTTTCTGTAGCACAGGATCCTGCAACCACGAGTTCTTAACATCTTCAAGTAGTTGAGCTTGAACCCCAGAGATGCTACAAAGCTGGATGGGTTCCTCTCTTCTAGAAAGAGCATCTGCAACAACATTGTCTTTGCCTTTTTTTATAGGAAATAAGGTAGTCATAACCAAGTAGTTTGACCAACCACTTCTGTTGGCCAGGGGTGGTAATCCTTTGCTCCATCAAATATTTGAGGGGTTGATGATCAGTTTTAATTATAAATTGCCTACCCAAAAGATAAGACCTCCACTTCTGGACAGGTGACACTAGTGCTAACACTTCCCTTTCATAAACTGATAGGGCTTGATTCTTCGCATACAACCTTTGACTAAAAATGCTATAGGTCTGTGATTTTGTGCAAATACAGCACCAATACCTCCTATAGAGGCTTCCGTTTCCACTATGAATTCTGTGGAAAAATCTGATAATGCTAACTCTGGTGCTGAAGTAACGGCCAGTTTGAGCTTGTCAAAAGCTTGAGAAGCAGCTTCAGTGCATTTGAGATTTCCCTTCTTCAATAAGTCATTCAAGGGTCTTGCTATAATACCAAAACTTTGGATAAACCTCATGTAGTACCCTGCAAGTCCCAAAAACCCTCTCAATCCTTTTAAAGTTGTAGGTTGGGGCCAGTTCACAACAGCATCTACCTTGCTTCCATCCATAGCAACCCCTTCTCGAGAGATGATATGACCTAAATAGTCAATTTGTTGAACCCCAAATGCACATTTGATCTGCTTCGCATACTAAACATTTTCTAGAATAATCTTGAAAGTTTCCCTCAAGTGAGAAAAGTGATCAGTCCACTTAGAGCTGTAGACAAGGATATCATCAAAGAATACTAAAATGAACTTTCTGAGATGAGGAAGAAAAATCCGATTCATCAAGCTTTGAAATGTGGAGGGGGCATTGGTTAGGCCGAAAGGCATGACCATAAATTCATAATGAACTTGATGGGTTCGAAAAACAGTTTTTGGGATGTCAGGCTCAAACATCCTAATCTGATGATAACCTGATCCTAGATCCAACTTAGAGAAATACTTTGCACCATGTAGCTCATCTAACAATTCTTCAATCAATGGAATGGGAAACTTATTCTTGATAGTACGTGAATTTAGTTCTCTGTAATCAACACACATTCTCCATGAACCATCCTTCTTCTTAAACATGACTATGGGTGAAGAATATGGACTGGTACTAGGCCTTATCACTCCTGAATCCATCATCTCATTGACCAGCTTCTCAATCTCATCCTTCTCAATTGCAGCGTATCTGTAGGGTCTAATGTTGATAGGAGAAGTGCCTTCCTTCAAGATGATTCTATGGTCATGATCTCTTGATGGTGGTAATTCAGTTGGTGCCTTAAACAAATCATTGAAATCTTGCAGTATCTCCTGTATGTCAGCTTTATCCTTACCAACTTCATCACAAGTGTTTATAGAAAAGAAACTTCCTGGTTCTCCACTGTACTCCTCCCCTAAATACATACCCACAGAAATCAAGCATAGTTCTGCTGGTTTAGCTAACAATTTATCCATGCCACTCTGCTGTACCAGCTTAGCTGCCGGAGGTTTGATACCCCTCAGAGACACCTTGTGTCCCATGATACTGAACTCCATTTTAAGTTGTTTGAAATTCCACGTTATATCCCCCAAGGTAATTAACCATTGGACCCCAAAGACCATGCTACACCCTCCAATAGGTAGCACTAACATGTCAGAATCGAATGAGACCCCTTGCATTTTCCAAACCAGCTTCTTACATGTATATTGACAATGCATCTTGTTTCCATCAGCCACAGACACAGGAAAAAGAGAGATAGCAGTTAAAATACATCCTAACCCTTTGGCAGTGTTTAAATCCAGAAAATTGTGAGTACTCCCTGTATCAATTAGGACTTGTACAGCCTTGCCCTTAACAGATACTGTTACTCTCATAGTCCTAAAGTCATGCAGTCCATTCATGGTATAAACAAAAACATGAGGCAGAATAACCCCCTGATCATCAGTCTACAGGGAGTCGCCTATCATAGTCAAGAATTCAGCAGGGTTTGCAACAACTTCCTGCTCTACTTCCTCAACACCCTCACTGTCCTCCTCTACTTCTATAGAAAATAATTGTTCTTCTTCTTACGAACATGGCCATACGCATACTTTTCATCACAATTAAACATAGTCCTTTGCTCCTCCTTTCATCCATCTCATTGACATTTTTCAGGTTAGGTTTGGGGTTATTAGAGAAGGTCGTGGAATTTTTGGAAGGGTTTGGATGACTTCTACTAGATTGGTAGGTGGATCCATAAGAAAAAGTGGGAGGATTATCAAATCTGGGAGTGGTTTTGGGATTGGAAAGCACTGAAGATCCAGAAGATACTTGCTGCTGGACAAATATGGCCTGCTCCTGTATTCTAGCTAAGTTAACTGCCTTAGCTAGTGACCTTGGTGCAAGCATTTTAACAGGTAAGCCAACTTCTGGTTTCAATCCTCTAACAAAGCAACTAACAACCTGATCTTCTGATAGTTCAACCCTAGTGAGTAATTCATCAAAGAGATTGACATAGTCTTGAACAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCATTGGATCGTCGAATAGTTCAGCCCCAAACCTAGCATAGAGGCTTCCTACATACTCAGTCCACCTTGGCCATTCCCTTGACAGCCTGTGCTTCACATAAGATTGGTGCCATTGGAGTGCCTTGCCCTCGAAGTTGCAAGATGCCAGCTTAACTTTTGAGTCTTCCGGGGTTTCGTCTACATCGAAAAAATTGTTCACATTTGTAAAGCCATTCCTTCAGTCCTTGTCCATCAAATTTAGGGAAATCCATCCGGTAATTACGGGTTGGCAATTGATAATTTCCAGGTCTATTTTCGCCCTTAGGAATTCCTTCAGCTGGGGGTCTAACACCGCCATGGGTGTTCATAGATGTTGCCAGCAATCTTCGAAATTTGTCAATGGCCTGAGCCACACTAGCATCCACAGACTGTCGAATCTTCGCGACAGAGCTGGTTACTCCTTCCATGGAGTGTTTGAGATTGTCAACCTCCTTGCGCAGCTCCTGCATCTGAGTGTTGTTATCTCCCATTGCCACAAATCAGAGAAATCTCTTGCTCTGATACCAATGATACAGTGTCAATTGAGTAAGCCTATAGAGCAAAGACGATTGAAAATTGCTCTTGAACAGCTGAACTCGAATCTTCCAAGGAGGAAGATGAATTGAGAGAGAAGATAGAGAGAAAGAGAATTTCTTATTGGTCTGCAAATTGGTTCTTTATAATGAATTCAACAGTATATGTACGAAGGGACAGCTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACTACTCACGTGTCAGTCATGTGTCCCATTTAACAGACTCAAATACAAAATTAACGGCTAATTCAATTTCTAATCAATTGACATGTAACATTTATATATACCTCCTTATTGAAATAGTCCTTGATGTATATAGAAAGCTGATCATATTGATCCTTAGCCCTAAAACAAACAGTAAAAGTAAAAAGTTCCGTTAAATTTAATTGTGGGTTACTTTGAAATTGACACCTGACAGACCCTTTCTCCCGCAATCTTCTTCCTTTCACCATTAAAGGTATGGTCCATCTTCAGTCCACCCACCAGCCATTCTTATAAGAACAGAAAAACACACTACACTCATTTCTTATCTCCCTCTAAACAATAATCCCCAGCAGCTTCCATTTTCATATATACATATATATAACAAAAAGTGAGACTGCTAAAACAAATGTGACCTAAGTAAATCAGATGATACATTCCATTCCTCTTCCCAGGAAAACTCCAAAACCAACTCTCTTCAAATTTTAACCAACTATTCTCTCTTTTTATAGCTAGATATGGGAAGAATATAGCTTTCTTTTTGTTTTGTCCTTTTTAAAACTAATGATTGATATACAAAACGTTACCTTTATCAAAGAAAAAAAAAATGATAGTCTTTTCATGTATTTTTCTATATCATTGTTCAGATAGAAGGGTGAAAACTGAATGGACAGAGGTTAAAAATCGATATCTTCACAATGTTATTTGAAAATTGAAGAGATTTTTGTGTGTCAAAAAGGATTTTGGTAATGAAAAGAAGAATAAACCAACTGAAAATTGCAGCAGAATTGGCGTAAGAAAGACGATTGAGGTAGAAGGGGTCTGCCACTTGTCAATTTCGAGGCACCCACAAATAAGTTTAACAGAAATTTTCATTTGTACAGTTAGTTTTAGGGTTGGCAATCAAAATGATCATCTTTTTATATACATCAAGGATTATTTCAATAAAAATAAGTATATATAAAGGACCAAAATAGTTCAATCCGTAAACATCAAGGACCATTTTGGTCATTTTCTCTACTACGAAATATGAACTATACAATAGCCTACTCATCTAAAGATCATATGAAATGAGTCAGCTACTCTTATTATATTTCCTTTTGAGTCCAAACAAGAGTCAGTTTCCTTTATGCCTCTTAATTGATTTTCCACTACTTATTCCAGGGTGCGAAG-TTAACCAATGCAA-ATCTGAAGGGTGC-AAACC-TTCAAAGAGCTTATCTTCGGCATGTGAATCTTC</genome_strand>
        <mrna_strand>GTGACACTGACAGTCCATTGATACATCAATCCTCACACTCTGAGAATGGCCTATCACTCCGACAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATACCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCACACTATCTGCCAGGAGTCAGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAAATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCATTTGTGGATTTCAGCTATGCATGTCTGAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATTTACTGGAGCAAATCTTCGTGGAGCTGTATAAGGCTGGTGCTAATCTTCAACAGTGCACATTTCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTCTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCGATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344644" ref_strand="+" ref_description="SGN-E344644 [cTOF-14-H19]">
      <seq>tccattgaatcatcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggatgttgatgccgaagcttccatttttcacaatgccacattgcgcgaatgtgaattcactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217046" stop="227500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217346" g_stop="217426" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="191" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="326" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="482" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="566" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="613" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.319" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="227142" g_stop="227200" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="672" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E344644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217346" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAA</genome_strand>
        <mrna_strand>TCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA...................................................................................................................................................................................................................................ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359048" ref_strand="+" ref_description="SGN-E359048 [cLHT-11-M21]">
      <seq>tccattgaatcatcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccatggttcgtctgaatatcggaggaaggaagttttgcacaacactggataccctcacccaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccgccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217046" stop="225527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217346" g_stop="217426" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.98"/>
            <acceptor a_prob="0.905" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="191" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="326" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="482" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="225155" g_stop="225227" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="555" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E359048" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217346" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTG</genome_strand>
        <mrna_strand>TCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACAACACTGGATACCCTCACCCAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCGCCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311966" ref_strand="+" ref_description="SGN-E311966 [cTOA-16-H12]">
      <seq>attgaatcatcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217049" stop="223580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217349" g_stop="217426" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="188" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="323" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223280" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="459" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E311966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217349" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTG</genome_strand>
        <mrna_strand>ATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687991" ref_strand="+" ref_description="SGN-E687991 [T3_tus_81_P17]">
      <seq>catcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggatgttgatgccgaagcttccatttttcacaatgccacattgcgcgaatgtgaattcactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttttgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaacctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217056" stop="228568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217356" g_stop="217426" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="181" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="316" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="472" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="556" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="603" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.319" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="227142" g_stop="227215" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="677" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="736" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="228241" g_stop="228268" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="764" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E687991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217356" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAACCTCG</genome_strand>
        <mrna_strand>CATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA...................................................................................................................................................................................................................................ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCAATGCCAACCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328816" ref_strand="+" ref_description="SGN-E328816 [cTOC-24-C5]">
      <seq>atcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggatgttgatgccgaagcttccattttcacaatgccacattgcgcgaatgtgattcactggagcaaatctcgtggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217057" stop="227476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217357" g_stop="217426" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="180" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="315" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="471" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="555" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="601" r_length="46" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.319" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="227142" g_stop="227176" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="634" r_length="33" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E328816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217357" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTG</genome_strand>
        <mrna_strand>ATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGCCGAAGCTTCCA-TTTTCACAATGCCACATTGCGCGA...................................................................................................................................................................................................................................ATGTG-ATTCACTGGAGCAAATC-TCGTGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438410" ref_strand="+" ref_description="SGN-E438410 [cSTA-7-F8]">
      <seq>atcaatcctcacactctgagaatggcctatcactccgacagttcgtcttccatggttcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatgtttagtggtcgtcacactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcactttcgccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcagctccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcaaatttcggggaattaatctttctggtcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217057" stop="223589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217357" g_stop="217426" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="180" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="315" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="223145" g_stop="223289" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="460" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E438410" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217357" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATC</genome_strand>
        <mrna_strand>ATCAATCCTCACACTCTGAGAATGGCCTATCACTCCGACAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATACCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCACACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTTCGCCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAGCTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAAATTTCGGGGAATTAATCTTTCTGGTCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539551" ref_strand="+" ref_description="SGN-E539551 [TUS-59-F22]">
      <seq>tccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaaggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggatgttgatgccgaagcttccatttttcacaatgccacattgcgcgaatgtgaattcactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtaacttttgtggggcggatcttcgttctgctcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217090" stop="228235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217390" g_stop="217426" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="147" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="278" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.319" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="227142" g_stop="227215" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="352" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="227880" g_stop="227935" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="408" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E539551" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217390" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227215"/>
          <exon e_start="227880" e_stop="227935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTA</genome_strand>
        <mrna_strand>TCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA...................................................................................................................................................................................................................................ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAACTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284931" ref_strand="+" ref_description="SGN-E284931 [cLER-19-H18]">
      <seq>ccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaaggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcagggatgttgatgccgaagcttccatttttcacaatgccacattgcgcgaatgtgaattcactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttttgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaacctcgaaggagctaatcttgaaggtgcaaatctgaagggtgcgaagttaaccaatgcaaatctgaagggtgcaaaccttcaaagagcttatcttcggcatgtgaatcttcgtgatacacatttggagggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217091" stop="236140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="217391" g_stop="217426" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671">
            <donor d_prob="0.790" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="218098" g_stop="218207" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="146" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="230" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="277" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.319" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="227142" g_stop="227215" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="351" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="410" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="228241" g_stop="228300" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="470" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="235760" g_stop="235840" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="551" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E284931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="217391" e_stop="217426"/>
          <exon e_start="218098" e_stop="218207"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228300"/>
          <exon e_start="235760" e_stop="235840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAGGTAAAAGTTATGCATGTAATACTATTGCCTAAATTCACCCAAGGTGGAATAATATTGGATACAGAAGCAGCTATCAAAACTAAGTTAAAAGTATTACTCTGGTGAACATGCGACTTTTGAACTATTTTTATTGCTCGTACTTCACTCATCCAACCTTAATTTATTTGTGCTTCTGCTAAAATCCTGCAAAGTTTCTTTAGAAGTACTTACCCAGAGGCCAAGACTGTTAAAATATTTTTATTGCTTGTAATTCACTGGAAATTATCTCAAATGATCATGTCATTTCATTTCTGTTATTGTGTTAAGATTTCTGCTAATCTTACTAACTGTTCTTTTCACAGTAATTGTTAAGTACTTTATGTAAGTCTTGCTTCTTTCTTGGACCACAGTTTCTTGCAACAGGAACAAGTGACCTTCCGACAGCCTAATATACCTAATTCTTCTCCGCACAGCTTCAAAATGCTTTTTTGACACAATGAAAACATTTTAGATATTATCCTAACACAATAATGCATGGCCTTCTAATCGCCTCAAAAGCGATTCCTCCTCGTGTATTATGCTAGTTATCTTGGCCTGACCTGCAGAGCTGAAAAATTGAATGGTGAAGGGTCTAACCACTAGGGGATAAAGTTTTACAAGGCACAAAATGTTTAACTTGAACTGACAAGCATACCCATACACCACCTTATAAGGTGTGCAACCCTCCATCCCTTCTGATGTGTGATGGGTTCTACATTACTTGCTTACCGATGTCACCCTAACCTTCTTTGTCTTCACCTGGACTGGCCATTCCATTGTTTTATAAGGCACTTGCTAAACCCGGTTTACTATACCACCTAAAGTATAATGCAATAAGATTTCTTCTTTCAGTCTCAAACCAATAGGTTCTGCCAATCCCCTCCAATAACTTGAGTAAACGAGTTTCCCAAACAGTCAGAAAGATATCTCTCACCAATAATCAAATTTTTATTGAACTTTGCAGTCAAGGATCGCTCTCTCTCTCTTTCTCCTTTTTTTCTTTGGGATCTATAAATAGTAAGTGCAGTCATTAATAAAGGGGCACCAAGGGTTTTCAGATCCTTCTATATCGTCCAAAAATACAAATAATAATAAAAAGTGAGTTCTATGAATGAGAAAACGACCAAATTAGTCGTTGATGTATACGGGTTGAATTATTTTGGTCCTTTATTGATAGTGTCAATTGAGTAAGCCTAAAGAGCAAAGATGATTGAGAATCACTCTTGAACAGCTGAACTCAAATCTTCCAAGGAAGAAGATGAATTGAGAGAGAATTTCTTATTGATCTGCAGATTGATTCTTTACAATGAACTCAACGAGTATATGTAAGAAAGGACAACTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACAAATCACGTGTCCCACTTAACAGACTCAAATACAAAATTAACAACTAATAAGATTTCTAATCAATTGACATGTAACAATATTCCCCCTCTTCATCAAATCCTTGAGCTCAAGGATTAAAATGTGGAAACCGCTGGGTGAAAGACTGATAATCCTCTCAAGTGCTATCGTATTCAGACGCATTGAACCATTTAACTAATTACTGAGTAGCAGGCCTGCCATGCTTCTTGATAATCCTCCTATCAAGAACTGCTTCTGGTGTCAAGAGGATGTGACCAGCATCAACATGAACCTCAGGGAGGGTAGCAGAAACTATATGGGACCCTAACTTCTTTTTGAGCTGAGAAATATGAAAAGTAGGGTGAATTCGAGAGGCAGGGGGTAATTGGAGAGTGTACACAACTGAACCCACCCTTGCTATGATTCGAAAAGGACCAAAAAACTTGGCTGAAAGTTTTTGGAAACTATGAGATTTCAATGATGTCTGTCTTTAAGGATGTAACTTTATGTAGACCCAATCCCCAATTACATAAGACCTATCAGTTCTTCCTTTGTCGGCCTGAGATTTCATTCGACTTCGGGTCTAGCTAAATGAGACTTTAGGCATCTCAAGGTAGCCTCGCTAGCTTGTTAGCATGTCAAGTTGGGAGTCGAAAGGCATGTATGGAAGGAGCGGAGGAGGTGTTTGACCATAATCAACAACATAGGGTGTCATGTTAATAGCAGAATGAAATGAAGTGTTGTACCACCATTCAGCCAGAGCCAACCATTGGGGCCATTCCCTAGGTTTCTCAAACATCATGCACCTGAGATAACACTCAAGACATCTATTAACAACTTCAGTCTGCCATCTGTTTGAGGGTAGTATGCAGAAGTGAGCAAGGTAACCTTCTGCAATTTGAACAATTCTTTCCAAACCTGCTTGTAAATACTGGATCTCTATCAGAGACTATAGTTTTTGGCATGCCATGGAGTTTGAATACCCCATTCATGAAAGCCTGAGCTACCTCCACTGCAGTATAAGGGTGCCATTAAGTGAGCTGCCTTGTTCTACCTGTCAACTACCACAAAAATAACCTCATGTCCATCGACCTCAAGGAAGACCCTCTATAAAATCCATCGAAATATCTTGCCACACTTGTTTGGAATTGTTAGAGGTTGAAGAAGGTCCGCTATGCTACATTTTCACCCTTGCACCTCTGACAAACATCACAACACCTAACATAGGCATAGACATCCTGTTTCATTTTCTTCCGGTAAAAATCCTGTTAAAGCCTCTGTAAGGTGGCTGTTATACCAGAATGACTTCCAGTAGCACTGTTATGGTATAAAGCTAATCTTTCCTCACTGTAGCCACAGAGCCTACCATCATCTTACTTTTTCTACTCAAGATCATAGCATGATAACTGTAGTAAGGTTTAGTAACAACTGTAGTCTGAATGGAAGTGATTAGTTTCTGTAGCACAGGATCCTGCAACCACGAGTTCTTAACATCTTCAAGTAGTTGAGCTTGAACCCCAGAGATGCTACAAAGCTGGATGGGTTCCTCTCTTCTAGAAAGAGCATCTGCAACAACATTGTCTTTGCCTTTTTTTATAGGAAATAAGGTAGTCATAACCAAGTAGTTTGACCAACCACTTCTGTTGGCCAGGGGTGGTAATCCTTTGCTCCATCAAATATTTGAGGGGTTGATGATCAGTTTTAATTATAAATTGCCTACCCAAAAGATAAGACCTCCACTTCTGGACAGGTGACACTAGTGCTAACACTTCCCTTTCATAAACTGATAGGGCTTGATTCTTCGCATACAACCTTTGACTAAAAATGCTATAGGTCTGTGATTTTGTGCAAATACAGCACCAATACCTCCTATAGAGGCTTCCGTTTCCACTATGAATTCTGTGGAAAAATCTGATAATGCTAACTCTGGTGCTGAAGTAACGGCCAGTTTGAGCTTGTCAAAAGCTTGAGAAGCAGCTTCAGTGCATTTGAGATTTCCCTTCTTCAATAAGTCATTCAAGGGTCTTGCTATAATACCAAAACTTTGGATAAACCTCATGTAGTACCCTGCAAGTCCCAAAAACCCTCTCAATCCTTTTAAAGTTGTAGGTTGGGGCCAGTTCACAACAGCATCTACCTTGCTTCCATCCATAGCAACCCCTTCTCGAGAGATGATATGACCTAAATAGTCAATTTGTTGAACCCCAAATGCACATTTGATCTGCTTCGCATACTAAACATTTTCTAGAATAATCTTGAAAGTTTCCCTCAAGTGAGAAAAGTGATCAGTCCACTTAGAGCTGTAGACAAGGATATCATCAAAGAATACTAAAATGAACTTTCTGAGATGAGGAAGAAAAATCCGATTCATCAAGCTTTGAAATGTGGAGGGGGCATTGGTTAGGCCGAAAGGCATGACCATAAATTCATAATGAACTTGATGGGTTCGAAAAACAGTTTTTGGGATGTCAGGCTCAAACATCCTAATCTGATGATAACCTGATCCTAGATCCAACTTAGAGAAATACTTTGCACCATGTAGCTCATCTAACAATTCTTCAATCAATGGAATGGGAAACTTATTCTTGATAGTACGTGAATTTAGTTCTCTGTAATCAACACACATTCTCCATGAACCATCCTTCTTCTTAAACATGACTATGGGTGAAGAATATGGACTGGTACTAGGCCTTATCACTCCTGAATCCATCATCTCATTGACCAGCTTCTCAATCTCATCCTTCTCAATTGCAGCGTATCTGTAGGGTCTAATGTTGATAGGAGAAGTGCCTTCCTTCAAGATGATTCTATGGTCATGATCTCTTGATGGTGGTAATTCAGTTGGTGCCTTAAACAAATCATTGAAATCTTGCAGTATCTCCTGTATGTCAGCTTTATCCTTACCAACTTCATCACAAGTGTTTATAGAAAAGAAACTTCCTGGTTCTCCACTGTACTCCTCCCCTAAATACATACCCACAGAAATCAAGCATAGTTCTGCTGGTTTAGCTAACAATTTATCCATGCCACTCTGCTGTACCAGCTTAGCTGCCGGAGGTTTGATACCCCTCAGAGACACCTTGTGTCCCATGATACTGAACTCCATTTTAAGTTGTTTGAAATTCCACGTTATATCCCCCAAGGTAATTAACCATTGGACCCCAAAGACCATGCTACACCCTCCAATAGGTAGCACTAACATGTCAGAATCGAATGAGACCCCTTGCATTTTCCAAACCAGCTTCTTACATGTATATTGACAATGCATCTTGTTTCCATCAGCCACAGACACAGGAAAAAGAGAGATAGCAGTTAAAATACATCCTAACCCTTTGGCAGTGTTTAAATCCAGAAAATTGTGAGTACTCCCTGTATCAATTAGGACTTGTACAGCCTTGCCCTTAACAGATACTGTTACTCTCATAGTCCTAAAGTCATGCAGTCCATTCATGGTATAAACAAAAACATGAGGCAGAATAACCCCCTGATCATCAGTCTACAGGGAGTCGCCTATCATAGTCAAGAATTCAGCAGGGTTTGCAACAACTTCCTGCTCTACTTCCTCAACACCCTCACTGTCCTCCTCTACTTCTATAGAAAATAATTGTTCTTCTTCTTACGAACATGGCCATACGCATACTTTTCATCACAATTAAACATAGTCCTTTGCTCCTCCTTTCATCCATCTCATTGACATTTTTCAGGTTAGGTTTGGGGTTATTAGAGAAGGTCGTGGAATTTTTGGAAGGGTTTGGATGACTTCTACTAGATTGGTAGGTGGATCCATAAGAAAAAGTGGGAGGATTATCAAATCTGGGAGTGGTTTTGGGATTGGAAAGCACTGAAGATCCAGAAGATACTTGCTGCTGGACAAATATGGCCTGCTCCTGTATTCTAGCTAAGTTAACTGCCTTAGCTAGTGACCTTGGTGCAAGCATTTTAACAGGTAAGCCAACTTCTGGTTTCAATCCTCTAACAAAGCAACTAACAACCTGATCTTCTGATAGTTCAACCCTAGTGAGTAATTCATCAAAGAGATTGACATAGTCTTGAACAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCATTGGATCGTCGAATAGTTCAGCCCCAAACCTAGCATAGAGGCTTCCTACATACTCAGTCCACCTTGGCCATTCCCTTGACAGCCTGTGCTTCACATAAGATTGGTGCCATTGGAGTGCCTTGCCCTCGAAGTTGCAAGATGCCAGCTTAACTTTTGAGTCTTCCGGGGTTTCGTCTACATCGAAAAAATTGTTCACATTTGTAAAGCCATTCCTTCAGTCCTTGTCCATCAAATTTAGGGAAATCCATCCGGTAATTACGGGTTGGCAATTGATAATTTCCAGGTCTATTTTCGCCCTTAGGAATTCCTTCAGCTGGGGGTCTAACACCGCCATGGGTGTTCATAGATGTTGCCAGCAATCTTCGAAATTTGTCAATGGCCTGAGCCACACTAGCATCCACAGACTGTCGAATCTTCGCGACAGAGCTGGTTACTCCTTCCATGGAGTGTTTGAGATTGTCAACCTCCTTGCGCAGCTCCTGCATCTGAGTGTTGTTATCTCCCATTGCCACAAATCAGAGAAATCTCTTGCTCTGATACCAATGATACAGTGTCAATTGAGTAAGCCTATAGAGCAAAGACGATTGAAAATTGCTCTTGAACAGCTGAACTCGAATCTTCCAAGGAGGAAGATGAATTGAGAGAGAAGATAGAGAGAAAGAGAATTTCTTATTGGTCTGCAAATTGGTTCTTTATAATGAATTCAACAGTATATGTACGAAGGGACAGCTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACTACTCACGTGTCAGTCATGTGTCCCATTTAACAGACTCAAATACAAAATTAACGGCTAATTCAATTTCTAATCAATTGACATGTAACATTTATATATACCTCCTTATTGAAATAGTCCTTGATGTATATAGAAAGCTGATCATATTGATCCTTAGCCCTAAAACAAACAGTAAAAGTAAAAAGTTCCGTTAAATTTAATTGTGGGTTACTTTGAAATTGACACCTGACAGACCCTTTCTCCCGCAATCTTCTTCCTTTCACCATTAAAGGTATGGTCCATCTTCAGTCCACCCACCAGCCATTCTTATAAGAACAGAAAAACACACTACACTCATTTCTTATCTCCCTCTAAACAATAATCCCCAGCAGCTTCCATTTTCATATATACATATATATAACAAAAAGTGAGACTGCTAAAACAAATGTGACCTAAGTAAATCAGATGATACATTCCATTCCTCTTCCCAGGAAAACTCCAAAACCAACTCTCTTCAAATTTTAACCAACTATTCTCTCTTTTTATAGCTAGATATGGGAAGAATATAGCTTTCTTTTTGTTTTGTCCTTTTTAAAACTAATGATTGATATACAAAACGTTACCTTTATCAAAGAAAAAAAAAATGATAGTCTTTTCATGTATTTTTCTATATCATTGTTCAGATAGAAGGGTGAAAACTGAATGGACAGAGGTTAAAAATCGATATCTTCACAATGTTATTTGAAAATTGAAGAGATTTTTGTGTGTCAAAAAGGATTTTGGTAATGAAAAGAAGAATAAACCAACTGAAAATTGCAGCAGAATTGGCGTAAGAAAGACGATTGAGGTAGAAGGGGTCTGCCACTTGTCAATTTCGAGGCACCCACAAATAAGTTTAACAGAAATTTTCATTTGTACAGTTAGTTTTAGGGTTGGCAATCAAAATGATCATCTTTTTATATACATCAAGGATTATTTCAATAAAAATAAGTATATATAAAGGACCAAAATAGTTCAATCCGTAAACATCAAGGACCATTTTGGTCATTTTCTCTACTACGAAATATGAACTATACAATAGCCTACTCATCTAAAGATCATATGAAATGAGTCAGCTACTCTTATTATATTTCCTTTTGAGTCCAAACAAGAGTCAGTTTCCTTTATGCCTCTTAATTGATTTTCCACTACTTATTCCAGGGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA</genome_strand>
        <mrna_strand>CCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201231" ref_strand="+" ref_description="SGN-E201231 [cLEC-10-E16]">
      <seq>acaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgtcgtttgtggatttcagctatgcatgtctaaaaacagtgttcttctcacgtgccaatcttcaatgtgcaaaattcaaggatgttgatgccgaagcttccatttttcacaatgccacattgcgcgaatgtgaattcactggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="217835" stop="227458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="218135" g_stop="218207" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="221522" g_stop="221656" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="208" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="223145" g_stop="223300" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="364" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854">
            <donor d_prob="0.856" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="225155" g_stop="225238" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="448" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629">
            <donor d_prob="0.836" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="226868" g_stop="226914" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="495" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.319" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="227142" g_stop="227158" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="512" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E201231" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="218135" e_stop="218207"/>
          <exon e_start="221522" e_stop="221656"/>
          <exon e_start="223145" e_stop="223300"/>
          <exon e_start="225155" e_stop="225238"/>
          <exon e_start="226868" e_stop="226914"/>
          <exon e_start="227142" e_stop="227158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTGGTAATAATTTAGTGCTAGACTATTTCATTTCTTTTTGTTCGTAGTTGCAGATATGGATACTTGATCTAGACTTCTTGCATTACCATCTTGTTGTCTTAATAACTATGCTCATTTCCTCATGTAGTTTCTATGCTTCATAAAGAGCTTATGCTTCTATGGGCATGATCGCCATCTCCTCATTGTTTTATGTTGTTTTTCTGTGTTTTAATAAATAAGAGAAGCAACCATTTAGTCAAAGAGGTTATGACAAAGGACAAGTTGTCCTCAAGTAAGATAAGTCTTACATTAAGAAAAGGGTGCAATTACATGCAACTCTGTTTTCCATTTACCCCAAGAAGGGGGAAAAATTTGAATACAGAGTTGATCTAATCTAGAATTGAAGGAATGTCCCGTCGCCTTACTCCACAAATTATAAAAACACTGTTAAGAGACTTTTTGGGATTTGAGGTTCAGGAGGAATTTTCACTATTGGGAGGTGACTGAGCTTCAGAGACGGCTAGTTTTACTTCAAAAGCAATGTAAATCAGTCAACAAATCTGATGTTTTTAGTTGAGAATTGGGGAATAACAAAGTGTTCTCTGTTAAGTTCTTTTATGAGAAGCTCTTGGGTCGGGGCGATGAGGGTTCCCATATGCTTTGGTCCGGATTCTTAAGGTGCCGAGGAAAGTATGTTTCTTCATGTGGTTAGCTACCAGTAGAGGGGTTATTTTGACGGCAGAGAATCTTGGAAAAAGAAAGGTTCTCTGCTTGATCTGGTATTTTCTTTGCAAGGAGGCTGGTGAGGATGTGGATCAAACTCCGTTACATTGCAAATATCCACGAGGTTATTGGGGGATATATTCAGATGGTTTGACATTTCTTGGGTAATGACAAGATCTGTGAAGGAGTTTATGTTCCAGTGGAGGAGTGAAGTTAGAAGAAGAAGACACAAGGCATGGAATGTTACTTCTTCTGCTCTTTTGTGGGTCATTTGGAAAGAAAGAAATATGAGAGCTTTTGAAGGGTGGATATGAGCTTTGCCAATTGAGAAGTAGTCTTCGATCCCTTTCTATTTTGTGCACCCATGTAGTTCTTGTTTGTATAGAGGACTGGGCGTCTTTTGGAGAGAACCATATTTTGTAGGTTTTCCCCCTTTTTTGGTATAAAGCGATGGGCAAGATATTTCTCCTTTTCTGTGGGCAATAGGCAAATGTAGCTCATTGCGAATGTAGATTATTCACCAGCAGAAAAAGCTTCAGCTTTGGTAGATTGCATGATGACCTTTTCTGCTTCCTTTTGCTTCCTACGAAGGTAAATAGTCAAAAAAGTTCCCCGTAGAATGCGAGCGCTGAGGCATTCATTGAAACAAAGAGAGGAACGGAGTTTGGACTTCAATCTTCATGAACATAGCATTTGGTTTTGTGCTTGAGTTTGGAACCGCGGAAGGCCAAAATCAAGGCTTTTCCAAATTTCAGCTACCGAAAAACTGAGCCCTGGAAACCAATCACTGAACTGAACAACCAAAGTTACAAATATGCATAACCTAAACCGACGGAATAAAGCGAAAACTGATTTGGTCATTTTTCTGGTCTTACGCACACCCCTACTTTGACTTTATCCGTTAATAAAATAATTACCTTATCCAAATTCATGTTCCTTACAAAGTGGGATATTCCAAAAAAGGAAGCTCATCTTGATAGCATCAGATAATGACTTCTTTGCTCTGTTTTACTGCAGTACAACCCCCCATCCCTTCTTTTTTGGCAACTTGGGAGAATCTCCCTAGCATTTGGCTATGTCAGATGTGTTGATATCATTATTCATATGATTTTCTACAACTTTTTAATTAGTCAATGATATCTGTTCTATGTGCAGGACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGGGTATTATTGCTCAATTAAATGTCTCTGAATTTTCAACCGCAGTTAGTGTGTAGATCACTGAGAATGTTGTACTTCTACAATTAGTCATAATACCTTGGGAGAGTGGGCATCTAACGTTAGCAGTAAATTTCTTTTATTTACACTTGTGATAATAGTCTAGAATCATATATAATTCTGAGTGAGAACATAGTAGTACTGCACTCTCTGTGGATGAGCTACTTCTTTACAGTTTTGGAGGTTTGTTTTGATGAAGGGAGAAAAGTTCTGAATTTGATGTGCTCTCACTTTAGCTTTGTTTGACTGAAAAATACTTCTAGGTCTTTCTACTTTTGCAAGATTAAGAATTATGTTTCGCAGTGTTGCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAGCACACCCAAGGTTAAGGGTGTGGCCTAGTGGTCAATGAAGTGGGTTGAGAATCATGAGGTCTTCGGTTCAAATCATAGCAGGGACAAAAACTCTAGGTGGTTCTTCCCATCTGTCCTAGCCTTGGTGGATAGAATTAACTGATACCTGTTGCTGGCGGGAGGTGGCAGGTATTTGGTGGAATTAGTTGAGGTGCACTCAAGCTAGCCTGTACACCACAATTATAAAAAGATAATAACATAGACATAGGCATATCAATTTATCTCAGCCTTGCTAATTGTCTCATTTGGTGCTGAGGGTATTTGCAAACATACTTCAGACAAAGCTGGTTGTTTCTATAAATTTAGTGCATAGTATTGTCTGTTTACTTGCAGTTAGAAAAAATGCACATTGTCTTTGGTGTAGCCATTGTACATGGCTGGCAACTTTTGGTCTTCATCAATGAGAAGTCCTTGCTTACAAATCTAGAAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAG</genome_strand>
        <mrna_strand>ACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA...................................................................................................................................................................................................................................ATGTGAATTCACTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417008" ref_strand="+" ref_description="SGN-E417008 [STM-24-G16]">
      <seq>gcagcggtcaaccttagccgagcgctcaactggagctcattggcatgcttcagtcctgttgaggttattgatgagagatgagtgtcttagtagccaattttagaaaaatggctggactggggtttgactaggttataccagctagatgaaaggtttgtaatcttgtttggctgcagcataggaaggaagaagaagttatggaaatggttagctatgttacaggactcttcattttgtcttgagtatccacgttgaatatgcatcgcacgtgtctgccttgttggattgatagcttttgcagattctcatacctcagtctcagtgatttctagtcttctttgcaaattgtctccttttatgctaaggggtgttttgcacattatttttgactaagtggtagtttgtataacaaatgtacaagattgtatgccttatattgggtaaaagaagttttggagatagtaagcaatgttgcatagagccatagactcttaatttgccttgatataccaatgttgactgggtatgacatggtaatatcatattggactatgtgtggttaaatatcattcctgactccatataacataatcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="225300" stop="226497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="225600" g_stop="226197" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E417008" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="225600" e_stop="226197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAA-G--GAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAG--TCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAG</genome_strand>
        <mrna_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTCATTGGCATGCTTCAGTCCTGTTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTTAGAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGAAGTTATGGAAATGGTTAGCTATGTTACAGGACTCTTCATTTTGTC-TTGAGTATCCACGTTGAATATGCATCGCACGTGT-CTGCCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCC--TT-TTATGCTAAGGGGTGTTTTGCACATTATTTTTGACTAAGTGGTAGTTTGTATAACAAATGTACAAGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTGCATAGAGCCATAGACTCTTAATTTGCCTTGATATACCAATGTTGACTGGGTATGACATGGTAATATCATATTGGACTATGTGTGGTTAAATATCATTCCTGACTCCATATAACATAATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440103" ref_strand="+" ref_description="SGN-E440103 [cSTA-15-C3]">
      <seq>gcagcggtcaaccttagccgagcgctcaactggagctcattggcatgcttcagtcctgttgaggttattgatgagagatgagtgtcttattagccaattttagaaaaatggctggactggggtttgactaggttataccagctagatgaaaggtttgtaatcttgtttggctgcagcataggaaggaagaagaagttatggaaatggttagctatgttacaggactcttcattttgtcttgagtatccacgttgaatatgcatcgcacgtgtctgccttgttggattgatagcttttgcagattctcatacctcagtctcagtgatttctagtcttctttgcaaattgtctccttttatgctaaggggtgttttgcacattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="225300" stop="226283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="225600" g_stop="225983" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E440103" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="225600" e_stop="225983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAA-G--GAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAG--TCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATT</genome_strand>
        <mrna_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTCATTGGCATGCTTCAGTCCTGTTGAGGTTATTGATGAGAGATGAGTGTCTTATTAGCCAATTTTAGAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGAAGTTATGGAAATGGTTAGCTATGTTACAGGACTCTTCATTTTGTC-TTGAGTATCCACGTTGAATATGCATCGCACGTGT-CTGCCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCC--TT-TTATGCTAAGGGGTGTTTTGCACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595447" ref_strand="+" ref_description="SGN-E595447 [38721]">
      <seq>attggcaacttttggtcttcttcaatgagaagtccttgcttacaaatctagaaaaaggataaggaaaaggaaaaggaaaaggaaaagttagcttttatgcagtgatactcttagttggatggtggtatattcaatgtctttgttgaaaagggactctaggaacatttgtacttctaagctcctaacactcccatgacctagttactaaataatactattttttttcttggtcgttctttaacttttgtcgcaggatgtcgatgccgaagcttccatttttcacaatgccacattgcgcgagtaagctatagcacataatctctcggtctccacatcttatgtagatcatgcatagtgtttaatcatcttaacagtgtttgatttttcgaagattcaccctctttacatcctctttttaacaggctttacatgtatgtgtggattaaaatttaagcacataaatattattttcaagcccatctttactgtcaagttgcaaccttagtgatttcatcttgcctagggaagatgtgaatttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgctttgtctaaataggctgttagcttttgtggggcggatcttcgttctgctcacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="226315" stop="228236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="226664" g_stop="227215" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="602" r_length="539" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="227880" g_stop="227936" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="662" r_length="60" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E595447" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="226664" e_stop="227215"/>
          <exon e_start="227880" e_stop="227936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACAT-AATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGC-TTGTCT-AATAGGCTG-TAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTAC</genome_strand>
        <mrna_strand>GAAAAGGAAAAGGAAAAGGAAAAGTTAGCTTTTATGCAGTGATACTCTTAGTTGGATGGTGGTATATTCAATGTCTTTGTTGA--A---A-AGGGACTCTAGGAACATTTGTACTTCTAAG--C--T-C-CTAACA-C-TCCCATGACCTAGTTACTAAATAATACTATTTTTTTTCTTGGTCGTTCTTTAACTTTTGTCGCAGGATGTCGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCACATAATCTCTCGGTCTCCACATCTTATGTAGATCATGCATAGTGTTTAATCATCTTAACAGTGTTTGATTTTTCGAAGATTCACCCTCTTTACATCCTCTTTTTAACAGGCTTTACATGTATGTGTGGATTAAAATTTAAGCACATAAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATCTTGCCTAGGGAAGATGTGAATTTACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTTGTCTAAATAGGCTGTTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431055" ref_strand="-" ref_description="SGN-E431055 [STM-54-H16]">
      <seq>gattaaaatttaagcacataaatattattttcaagcccatctttactgtcaagttgcaaccttagtgatttcatcttgcctagggaagatgtgaatttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttctgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaacctcgaaggagctaatcttgaaggtgcaaatctgaagcatttggagggggcaaagcttgatggtgccaatttactgggtgcaatcaggtgacaccacagatttgttctcatcccaaacctctcccagagcaacattaaagaagagagctacaaaaaggaattgtatagcaatagaatcaagccttacatgtattgaccaactattttagtttaatttggtggtctaaatctcaatttaattatgtgtaagggtaaacccaaattgtttcaaaccattctggcctgtaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="226755" stop="240453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="227055" g_stop="227215" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="221" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="228241" g_stop="228300" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="281" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="228301" i_stop="235780" i_length="7480">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="235781" g_stop="235840" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="338" r_length="57" r_score="0.617"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="235841" i_stop="236526" i_length="686">
            <donor d_prob="0.971" d_score="0.60"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="236527" g_stop="236531" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="343" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="236532" i_stop="239004" i_length="2473">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="239005" g_stop="239026" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="363" r_length="20" r_score="0.545"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69">
            <donor d_prob="0.640" d_score="0.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="239096" g_stop="239117" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="383" r_length="20" r_score="0.682"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52">
            <donor d_prob="0.015" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="239170" g_stop="239180" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="394" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830">
            <donor d_prob="0.832" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="240011" g_stop="240153" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="534" r_length="140" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E431055" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431055" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="227055" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228300"/>
          <exon e_start="235781" e_stop="235840"/>
          <exon e_start="236527" e_stop="236531"/>
          <exon e_start="239005" e_stop="239026"/>
          <exon e_start="239096" e_stop="239117"/>
          <exon e_start="239170" e_stop="239180"/>
          <exon e_start="240011" e_stop="240153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAAATTTAAGCACAT-AATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAGGTAAAAGTTATGCATGTAATACTATTGCCTAAATTCACCCAAGGTGGAATAATATTGGATACAGAAGCAGCTATCAAAACTAAGTTAAAAGTATTACTCTGGTGAACATGCGACTTTTGAACTATTTTTATTGCTCGTACTTCACTCATCCAACCTTAATTTATTTGTGCTTCTGCTAAAATCCTGCAAAGTTTCTTTAGAAGTACTTACCCAGAGGCCAAGACTGTTAAAATATTTTTATTGCTTGTAATTCACTGGAAATTATCTCAAATGATCATGTCATTTCATTTCTGTTATTGTGTTAAGATTTCTGCTAATCTTACTAACTGTTCTTTTCACAGTAATTGTTAAGTACTTTATGTAAGTCTTGCTTCTTTCTTGGACCACAGTTTCTTGCAACAGGAACAAGTGACCTTCCGACAGCCTAATATACCTAATTCTTCTCCGCACAGCTTCAAAATGCTTTTTTGACACAATGAAAACATTTTAGATATTATCCTAACACAATAATGCATGGCCTTCTAATCGCCTCAAAAGCGATTCCTCCTCGTGTATTATGCTAGTTATCTTGGCCTGACCTGCAGAGCTGAAAAATTGAATGGTGAAGGGTCTAACCACTAGGGGATAAAGTTTTACAAGGCACAAAATGTTTAACTTGAACTGACAAGCATACCCATACACCACCTTATAAGGTGTGCAACCCTCCATCCCTTCTGATGTGTGATGGGTTCTACATTACTTGCTTACCGATGTCACCCTAACCTTCTTTGTCTTCACCTGGACTGGCCATTCCATTGTTTTATAAGGCACTTGCTAAACCCGGTTTACTATACCACCTAAAGTATAATGCAATAAGATTTCTTCTTTCAGTCTCAAACCAATAGGTTCTGCCAATCCCCTCCAATAACTTGAGTAAACGAGTTTCCCAAACAGTCAGAAAGATATCTCTCACCAATAATCAAATTTTTATTGAACTTTGCAGTCAAGGATCGCTCTCTCTCTCTTTCTCCTTTTTTTCTTTGGGATCTATAAATAGTAAGTGCAGTCATTAATAAAGGGGCACCAAGGGTTTTCAGATCCTTCTATATCGTCCAAAAATACAAATAATAATAAAAAGTGAGTTCTATGAATGAGAAAACGACCAAATTAGTCGTTGATGTATACGGGTTGAATTATTTTGGTCCTTTATTGATAGTGTCAATTGAGTAAGCCTAAAGAGCAAAGATGATTGAGAATCACTCTTGAACAGCTGAACTCAAATCTTCCAAGGAAGAAGATGAATTGAGAGAGAATTTCTTATTGATCTGCAGATTGATTCTTTACAATGAACTCAACGAGTATATGTAAGAAAGGACAACTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACAAATCACGTGTCCCACTTAACAGACTCAAATACAAAATTAACAACTAATAAGATTTCTAATCAATTGACATGTAACAATATTCCCCCTCTTCATCAAATCCTTGAGCTCAAGGATTAAAATGTGGAAACCGCTGGGTGAAAGACTGATAATCCTCTCAAGTGCTATCGTATTCAGACGCATTGAACCATTTAACTAATTACTGAGTAGCAGGCCTGCCATGCTTCTTGATAATCCTCCTATCAAGAACTGCTTCTGGTGTCAAGAGGATGTGACCAGCATCAACATGAACCTCAGGGAGGGTAGCAGAAACTATATGGGACCCTAACTTCTTTTTGAGCTGAGAAATATGAAAAGTAGGGTGAATTCGAGAGGCAGGGGGTAATTGGAGAGTGTACACAACTGAACCCACCCTTGCTATGATTCGAAAAGGACCAAAAAACTTGGCTGAAAGTTTTTGGAAACTATGAGATTTCAATGATGTCTGTCTTTAAGGATGTAACTTTATGTAGACCCAATCCCCAATTACATAAGACCTATCAGTTCTTCCTTTGTCGGCCTGAGATTTCATTCGACTTCGGGTCTAGCTAAATGAGACTTTAGGCATCTCAAGGTAGCCTCGCTAGCTTGTTAGCATGTCAAGTTGGGAGTCGAAAGGCATGTATGGAAGGAGCGGAGGAGGTGTTTGACCATAATCAACAACATAGGGTGTCATGTTAATAGCAGAATGAAATGAAGTGTTGTACCACCATTCAGCCAGAGCCAACCATTGGGGCCATTCCCTAGGTTTCTCAAACATCATGCACCTGAGATAACACTCAAGACATCTATTAACAACTTCAGTCTGCCATCTGTTTGAGGGTAGTATGCAGAAGTGAGCAAGGTAACCTTCTGCAATTTGAACAATTCTTTCCAAACCTGCTTGTAAATACTGGATCTCTATCAGAGACTATAGTTTTTGGCATGCCATGGAGTTTGAATACCCCATTCATGAAAGCCTGAGCTACCTCCACTGCAGTATAAGGGTGCCATTAAGTGAGCTGCCTTGTTCTACCTGTCAACTACCACAAAAATAACCTCATGTCCATCGACCTCAAGGAAGACCCTCTATAAAATCCATCGAAATATCTTGCCACACTTGTTTGGAATTGTTAGAGGTTGAAGAAGGTCCGCTATGCTACATTTTCACCCTTGCACCTCTGACAAACATCACAACACCTAACATAGGCATAGACATCCTGTTTCATTTTCTTCCGGTAAAAATCCTGTTAAAGCCTCTGTAAGGTGGCTGTTATACCAGAATGACTTCCAGTAGCACTGTTATGGTATAAAGCTAATCTTTCCTCACTGTAGCCACAGAGCCTACCATCATCTTACTTTTTCTACTCAAGATCATAGCATGATAACTGTAGTAAGGTTTAGTAACAACTGTAGTCTGAATGGAAGTGATTAGTTTCTGTAGCACAGGATCCTGCAACCACGAGTTCTTAACATCTTCAAGTAGTTGAGCTTGAACCCCAGAGATGCTACAAAGCTGGATGGGTTCCTCTCTTCTAGAAAGAGCATCTGCAACAACATTGTCTTTGCCTTTTTTTATAGGAAATAAGGTAGTCATAACCAAGTAGTTTGACCAACCACTTCTGTTGGCCAGGGGTGGTAATCCTTTGCTCCATCAAATATTTGAGGGGTTGATGATCAGTTTTAATTATAAATTGCCTACCCAAAAGATAAGACCTCCACTTCTGGACAGGTGACACTAGTGCTAACACTTCCCTTTCATAAACTGATAGGGCTTGATTCTTCGCATACAACCTTTGACTAAAAATGCTATAGGTCTGTGATTTTGTGCAAATACAGCACCAATACCTCCTATAGAGGCTTCCGTTTCCACTATGAATTCTGTGGAAAAATCTGATAATGCTAACTCTGGTGCTGAAGTAACGGCCAGTTTGAGCTTGTCAAAAGCTTGAGAAGCAGCTTCAGTGCATTTGAGATTTCCCTTCTTCAATAAGTCATTCAAGGGTCTTGCTATAATACCAAAACTTTGGATAAACCTCATGTAGTACCCTGCAAGTCCCAAAAACCCTCTCAATCCTTTTAAAGTTGTAGGTTGGGGCCAGTTCACAACAGCATCTACCTTGCTTCCATCCATAGCAACCCCTTCTCGAGAGATGATATGACCTAAATAGTCAATTTGTTGAACCCCAAATGCACATTTGATCTGCTTCGCATACTAAACATTTTCTAGAATAATCTTGAAAGTTTCCCTCAAGTGAGAAAAGTGATCAGTCCACTTAGAGCTGTAGACAAGGATATCATCAAAGAATACTAAAATGAACTTTCTGAGATGAGGAAGAAAAATCCGATTCATCAAGCTTTGAAATGTGGAGGGGGCATTGGTTAGGCCGAAAGGCATGACCATAAATTCATAATGAACTTGATGGGTTCGAAAAACAGTTTTTGGGATGTCAGGCTCAAACATCCTAATCTGATGATAACCTGATCCTAGATCCAACTTAGAGAAATACTTTGCACCATGTAGCTCATCTAACAATTCTTCAATCAATGGAATGGGAAACTTATTCTTGATAGTACGTGAATTTAGTTCTCTGTAATCAACACACATTCTCCATGAACCATCCTTCTTCTTAAACATGACTATGGGTGAAGAATATGGACTGGTACTAGGCCTTATCACTCCTGAATCCATCATCTCATTGACCAGCTTCTCAATCTCATCCTTCTCAATTGCAGCGTATCTGTAGGGTCTAATGTTGATAGGAGAAGTGCCTTCCTTCAAGATGATTCTATGGTCATGATCTCTTGATGGTGGTAATTCAGTTGGTGCCTTAAACAAATCATTGAAATCTTGCAGTATCTCCTGTATGTCAGCTTTATCCTTACCAACTTCATCACAAGTGTTTATAGAAAAGAAACTTCCTGGTTCTCCACTGTACTCCTCCCCTAAATACATACCCACAGAAATCAAGCATAGTTCTGCTGGTTTAGCTAACAATTTATCCATGCCACTCTGCTGTACCAGCTTAGCTGCCGGAGGTTTGATACCCCTCAGAGACACCTTGTGTCCCATGATACTGAACTCCATTTTAAGTTGTTTGAAATTCCACGTTATATCCCCCAAGGTAATTAACCATTGGACCCCAAAGACCATGCTACACCCTCCAATAGGTAGCACTAACATGTCAGAATCGAATGAGACCCCTTGCATTTTCCAAACCAGCTTCTTACATGTATATTGACAATGCATCTTGTTTCCATCAGCCACAGACACAGGAAAAAGAGAGATAGCAGTTAAAATACATCCTAACCCTTTGGCAGTGTTTAAATCCAGAAAATTGTGAGTACTCCCTGTATCAATTAGGACTTGTACAGCCTTGCCCTTAACAGATACTGTTACTCTCATAGTCCTAAAGTCATGCAGTCCATTCATGGTATAAACAAAAACATGAGGCAGAATAACCCCCTGATCATCAGTCTACAGGGAGTCGCCTATCATAGTCAAGAATTCAGCAGGGTTTGCAACAACTTCCTGCTCTACTTCCTCAACACCCTCACTGTCCTCCTCTACTTCTATAGAAAATAATTGTTCTTCTTCTTACGAACATGGCCATACGCATACTTTTCATCACAATTAAACATAGTCCTTTGCTCCTCCTTTCATCCATCTCATTGACATTTTTCAGGTTAGGTTTGGGGTTATTAGAGAAGGTCGTGGAATTTTTGGAAGGGTTTGGATGACTTCTACTAGATTGGTAGGTGGATCCATAAGAAAAAGTGGGAGGATTATCAAATCTGGGAGTGGTTTTGGGATTGGAAAGCACTGAAGATCCAGAAGATACTTGCTGCTGGACAAATATGGCCTGCTCCTGTATTCTAGCTAAGTTAACTGCCTTAGCTAGTGACCTTGGTGCAAGCATTTTAACAGGTAAGCCAACTTCTGGTTTCAATCCTCTAACAAAGCAACTAACAACCTGATCTTCTGATAGTTCAACCCTAGTGAGTAATTCATCAAAGAGATTGACATAGTCTTGAACAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCATTGGATCGTCGAATAGTTCAGCCCCAAACCTAGCATAGAGGCTTCCTACATACTCAGTCCACCTTGGCCATTCCCTTGACAGCCTGTGCTTCACATAAGATTGGTGCCATTGGAGTGCCTTGCCCTCGAAGTTGCAAGATGCCAGCTTAACTTTTGAGTCTTCCGGGGTTTCGTCTACATCGAAAAAATTGTTCACATTTGTAAAGCCATTCCTTCAGTCCTTGTCCATCAAATTTAGGGAAATCCATCCGGTAATTACGGGTTGGCAATTGATAATTTCCAGGTCTATTTTCGCCCTTAGGAATTCCTTCAGCTGGGGGTCTAACACCGCCATGGGTGTTCATAGATGTTGCCAGCAATCTTCGAAATTTGTCAATGGCCTGAGCCACACTAGCATCCACAGACTGTCGAATCTTCGCGACAGAGCTGGTTACTCCTTCCATGGAGTGTTTGAGATTGTCAACCTCCTTGCGCAGCTCCTGCATCTGAGTGTTGTTATCTCCCATTGCCACAAATCAGAGAAATCTCTTGCTCTGATACCAATGATACAGTGTCAATTGAGTAAGCCTATAGAGCAAAGACGATTGAAAATTGCTCTTGAACAGCTGAACTCGAATCTTCCAAGGAGGAAGATGAATTGAGAGAGAAGATAGAGAGAAAGAGAATTTCTTATTGGTCTGCAAATTGGTTCTTTATAATGAATTCAACAGTATATGTACGAAGGGACAGCTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACTACTCACGTGTCAGTCATGTGTCCCATTTAACAGACTCAAATACAAAATTAACGGCTAATTCAATTTCTAATCAATTGACATGTAACATTTATATATACCTCCTTATTGAAATAGTCCTTGATGTATATAGAAAGCTGATCATATTGATCCTTAGCCCTAAAACAAACAGTAAAAGTAAAAAGTTCCGTTAAATTTAATTGTGGGTTACTTTGAAATTGACACCTGACAGACCCTTTCTCCCGCAATCTTCTTCCTTTCACCATTAAAGGTATGGTCCATCTTCAGTCCACCCACCAGCCATTCTTATAAGAACAGAAAAACACACTACACTCATTTCTTATCTCCCTCTAAACAATAATCCCCAGCAGCTTCCATTTTCATATATACATATATATAACAAAAAGTGAGACTGCTAAAACAAATGTGACCTAAGTAAATCAGATGATACATTCCATTCCTCTTCCCAGGAAAACTCCAAAACCAACTCTCTTCAAATTTTAACCAACTATTCTCTCTTTTTATAGCTAGATATGGGAAGAATATAGCTTTCTTTTTGTTTTGTCCTTTTTAAAACTAATGATTGATATACAAAACGTTACCTTTATCAAAGAAAAAAAAAATGATAGTCTTTTCATGTATTTTTCTATATCATTGTTCAGATAGAAGGGTGAAAACTGAATGGACAGAGGTTAAAAATCGATATCTTCACAATGTTATTTGAAAATTGAAGAGATTTTTGTGTGTCAAAAAGGATTTTGGTAATGAAAAGAAGAATAAACCAACTGAAAATTGCAGCAGAATTGGCGTAAGAAAGACGATTGAGGTAGAAGGGGTCTGCCACTTGTCAATTTCGAGGCACCCACAAATAAGTTTAACAGAAATTTTCATTTGTACAGTTAGTTTTAGGGTTGGCAATCAAAATGATCATCTTTTTATATACATCAAGGATTATTTCAATAAAAATAAGTATATATAAAGGACCAAAATAGTTCAATCCGTAAACATCAAGGACCATTTTGGTCATTTTCTCTACTACGAAATATGAACTATACAATAGCCTACTCATCTAAAGATCATATGAAATGAGTCAGCTACTCTTATTATATTTCCTTTTGAGTCCAAACAAGAGTCAGTTTCCTTTATGCCTCTTAATTGATTTTCCACTACTTATTCCAGGGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACAGTAAGTCATATTACCACTGCCAATCAGTTGGGCTTTGTAATAGCCTACTTATCTATCCTCAATTATGTTGATTCTGTGAAGCATATGTGGAAATTTTTAGGAAAGAAAAAACAATTGCTTGAAATAAAGCCAGATTTTCATTCACTGACAAGGATTAACCTTTTCCCTGGCCTTTTGCTGGATCTTCTTGTAATCCAATTCACCGATGAATTTCCATCTGGAAGGAAAAAAAGTTGATAATGTGAATCAAAGTTCTCTTGAATAATAATAATTATATTGGAATCTCTGTGATATCCAATGGAACCTTCGCCTTTGAACTTTAAACTACATATAGGAAATGCATTTCACCTCACCAACCGTTGGGATGTAGTAATCATAAATTTCTAAAGATAAGTAAATGACACTCTCTACCACTATAAACCATCTTTCCTGTATATCTGTCTTTCAAATTCCTTTTCTGACTCAAACCATTGAGTTTTTGGGCGTTCATATGGCTACTATCCCACGAATTCATTTCAACTTCAAGTTGCTATCTTGGAGTGTTTAAATAATTTTCCCAACCTCAATAGTTTTCTTGTGCTGTCTTGCATATTTCTGATTGTGACTGCTAAATTGTACTGTATTTTCTATGTATTATATGTGTAAAGAAGCATGAGAGGTTAACATCAACATTTTTGAATGTCTAGCTCAGTGTTATCAAAGGCGTGCTTTAAGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTTGCCTCGCTTTATGTGCACTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTTCACTGCTAATGAGCCTCATATGAAGAAGTGACACTAAACAATTAATATTTTATTATATCATAATTTTTTTTTCAATTTCTTTGGTCATAAATGTGTCATTCATGTTCATAATTTCTAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACGCTTTATTTCCGCTTTGCGCTTAAAGTCCCCACAGACCTTAAGAGCTTTTTTGTGCTTTTCGCCTTTGATAACATCACTCTAGCTCCAGAACAGTATGTACATTATGTTGTTTGACTACTTAATGTCTCGTCAACTAAAAAGGCTGAAAGGCAGAATATTTTAGTTATGAATATATGGCATTTATGAAGTTTGTGAGATACCTATCAAACTATGTGCAAAACTTGCTTGGTAATTGTTGCTTCCAATTGCACACACTAGTGTACGTGATCGCACAAGTAATTTAGTGGCTCTAAAAGAGCCGGATTATCGAACCCATAAGACTTGTCTATTAATTATCTTACTAAATTATACTAGTCTAATTATTTATTCAAGAGTGCCAAAAGAGTTTGATTTATAAATAAAGAATGCAAGAATTGAATACTAAGATTACCTTTGTATGGGGAAATTTCAGGGCTGCAACATGCTTAAGGTTTCATGTATCACATCTCATGTGATGAATCAACTATGGTTATCAAAATTACTAATTTACATGGTTGATTTTATGATCATAACTTCCCGACCTTTAATCGCCTACTCCAATTGACTTTCTAACTACATCTTTGAGCGGAGATAGACAAACTCAATTGGCGAGCATTTATATTTCATCCTATTTAGTAGCTAAGCTCAATGTTCATCTCAATTTTAATCTTGAACATGAATCTAAACAAGTGATATGCAAGAGGGATCGAGCTCTTTGTATTCTTTGGTCTATCTATCCCTTCATCTCTCGAGTCCAAGAATAGACAATATGTTTATTTCTATGGTGATCAAGCATGAAATACTAAAACCAAAATTCAAAAGTAATTTGAGTGAAGCCAACATTAATTCAAAACAATCGATGTTCAAAAATTACTCGTAGTCGCAACCCCACAACAAGGGTCTTTAGCTACTAATGTCTAAGAAAGCAGAAGAAGAAAAAGAACCCTTACAGTGAAATCTATTTCTTGCCTTCTGCACTTGAAAAAGAAGAAGCTCCCCTACAAAAGAACCCTAGGGCTCTATTTATAGTTGCGGAAAATAATCCCTCCTAATTGATTCGGACTCCTTAATTTTCAGAATTTTCTTCGGGGTGTTCGTGGGGCAGCTCGCCACCATAGCGCCGAGACTGCTGGGGCAGTGTGTGAACAGTACGGCAAAAGTTGGCTTCAGTAGTTTAGGCCCTGGCGCGGTGCACCTAGGCTGCTCCAGGGGTGTTTTTCTTCAGTCATTTTTCCTTCACTCCCGTCACCTCTTATTTAGCTCATATTCCTTTAGGAGCCCCTACATGTGCTAATCATGTAGGTTAAGTGCGCATTCATTGGAATACTTTATCAAAACCAGTGTTATCAAAGGCTCTCGTAAGCCTTAAAGCGAGCTCAAAATGTGTTGAGTGTTTCACCTCGTTTTATGTGCTCTTTAGTGTCGTCATCAAGGTTCTAAGGTAAACTTTTCCTAGCCAATGAGCCTCTTATGAAGAAGTGAAACGAAACGAAATAATTAATATTTCACTTTATCGTAAATTTTTTTCAATTACTTTGGTCATATATTTGTCATTCATGTTTATAATTATTATTTTTTGGACTAAACATATATATTTGTGTTCTTTTCTCCCTTTGCGCCTTTTTTCATAAAGCACATGCTTTATTTGCGCTTAAAGGCCCCATGGACCTTAGAGTTTTTTGCGCTTTTCGCCTTTGATAAACTGATTAAAACACAACAATTATCATAAAAATGTCCTCGAAACATAAGTCACATGTGGGTAAATCGTAGTGTATGGGCATATAAATATGCCCAAGATCAGTAATTCCTTAAATCTTGCTCTCGGATGATCAAGTCTGATTCCTTCCAGAGAGGCACCATTGAGTTTTTTTATACTAGAGTTTAAGCAATGAATTTCCATGAGCACATCATCCCATATTAGCGAATCTGATTCATGTCTGTGATCTTTATTTGCCAAAATGTCTGCACACTGATTTGCTCCCTCCAGATGTTGATAATATTTGCTTTCTCGACTTCCGGGTATCTGCAATCCTCGATAATAGCCTTGGAGGATGAAACTGAATGCCGTCTTCGTTGATAAGCTTAACAAGAAGCAAACAATCTGTTTCCACTTCTAATTATTTTATCTCACTGCCTTTGCTAATTGTAGCCCTTGTTCGACTCCTATTTCCGTAAGGAAGCTTGAGTTAGGTTTTATCTTACATGAATATCCCATTATCTTTTTCCCTTGATTATCTCAGTCTTCCAAAAGCAGCATCTCCAGTTTGGGTTTTCACATTGCCATCAATGTTCAGTTTAATCTTTTCTAAACAAGGAGGAGACCAAGTGAGTAATAGTCTTAACTTCAGATAAGAAGTTCATCAAGGAAATATTTCAACAATTTCCCAAGCATAATCACTATTATGTGCAAAGATCTGTTGATGGACGTTATTTTTTCCAATCAAATTTCTATTTCTTTCTTTCCATTTGCCAAATAGATGAAAATGTTAGTGTAACACAGTAGGAGATCAATCAATCCATTCAAGCATAAGCATAGCATTCATTTCATGAAATCAATCTCATTTTGGGAGTGGAAACTATCCCAAATTTATCTACATTTTTTACTAGTCCTAATAATATGTGAAAAGTCCTCCTTTTCATCATCACATCATTCGCATTTGTGGAAGTCAATTATCTTCCTAGTGGATCTAAGGTTGTTATGTCTTACAACCCATATGAGTTTTTTAGAAAAAAAAAAAAAGAGGGTCTTACAAGTCACATGAAGCGTCTTATTTTCCCTAGATGAAGTTTCCCTGGTCAATGTCCTATCATTTGAGTTGTGTATCCAATTATGCTTCTGTTGATCCTTGGACTAATCTCCTTTTACCACTGCATTCAATATAGAAATGTCTGATGTAACAAATTTAACCATAGTAGTTAACTGATGATGGTATGTTTTGGTATGTTTGCCTAGTATATAGGGAAAGGGATGAAAGCTTGAAGGGTGTGATTCAGCTCTGTTGCTTAATATTCTCTGCTCGCCATTTTATTTTATTCTAGTTGGAACTAAATATTTCTCTCTTTCTCTCAGCATTTGGAGGGGGCGAAGCTTGATGGTGCCAATTTACTGGGTGCAATCAGGTGACACACAGATTTGTTCTCATCCCAAACCTCTACAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAA</genome_strand>
        <mrna_strand>GATTAAAATTTAAGCACATAAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATCTTGCCTAGGGAAGATGTGAATTTACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTCTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGGAGGGGGCAAAGCTTGATGGTGCCAATTTACTGGGTG-CAATC-AGGTGACAC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-ATTTGTTCTCATCCCA-AACC.....................................................................TC-TCCCAGAGCAACAT-TAAA....................................................GAAGAGAGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAGGAATTGTATAGCAATAGAATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATGTGTAAG-G-GTAAACCCAAATTGTTTCAAACCATTCTGGCC-TGTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592219" ref_strand="+" ref_description="SGN-E592219 [45948]">
      <seq>atttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttctgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaacctcgaaggagctaatcttgaaggtgcaaatctgaagggtgcgaagttaaccaatgcaaatctgaagggtgcaaaccttcaaagagcttatcttcggcatgtgaatcttcgtgatacacatttggagggggcaaagcttgatggtgccaatttactgggtgcaatcaggtgacaccacagatttgttctcatcccaaacctctcccagagcaacattaaagaagagagctacaaaaaggaattgtatagcaatagaatcaagccttacatgtattgaccaactattttagtttaatttggtggtctaaatctcaatttaattatctgtatgtgtgtaaacccaaattgtttcaaaccattctggccttgtaagaatgtttaacttttcaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="226848" stop="240474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="227148" g_stop="227215" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="227880" g_stop="227938" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="127" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="228241" g_stop="228300" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="187" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="235760" g_stop="235840" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="268" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="235841" i_stop="236054" i_length="214">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="236055" g_stop="236081" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="295" r_length="27" r_score="0.667"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="236082" i_stop="236259" i_length="178">
            <donor d_prob="0.547" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="236260" g_stop="236271" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="306" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="236272" i_stop="237288" i_length="1017">
            <donor d_prob="0.553" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="237289" g_stop="237306" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="324" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="237307" i_stop="238888" i_length="1582">
            <donor d_prob="0.274" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="238889" g_stop="238893" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="329" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="238894" i_stop="239004" i_length="111">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="239005" g_stop="239026" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="350" r_length="21" r_score="0.545"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69">
            <donor d_prob="0.640" d_score="0.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="239096" g_stop="239117" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="370" r_length="20" r_score="0.682"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52">
            <donor d_prob="0.015" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="239170" g_stop="239180" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="381" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830">
            <donor d_prob="0.832" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="240011" g_stop="240174" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="544" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E592219" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="227148" e_stop="227215"/>
          <exon e_start="227880" e_stop="227938"/>
          <exon e_start="228241" e_stop="228300"/>
          <exon e_start="235760" e_stop="235840"/>
          <exon e_start="236055" e_stop="236081"/>
          <exon e_start="236260" e_stop="236271"/>
          <exon e_start="237289" e_stop="237306"/>
          <exon e_start="238889" e_stop="238893"/>
          <exon e_start="239005" e_stop="239026"/>
          <exon e_start="239096" e_stop="239117"/>
          <exon e_start="239170" e_stop="239180"/>
          <exon e_start="240011" e_stop="240174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAGGTTAAACTTCTAAAACTGTAATGTCTGTTGCTGCATCCTCTGTGGATCCTTTTAAATTTTTGACATTTTTACGTGTTTTCTTGACAAGATATTCTACTACAGCTTCATTCTCTGATGCACCTAAATTATATAAAAAAAAATTATATCTTTGTTGGTAGAAAGTGAACTTGTAATGATTTGGAATAAGGCCTAGATTCTTATTCTTTGCCTAAATCCTCTCACTTCAGTTTTACAACTCTATTTAGCATTTATATTTTGAAGCCTGTTTAATGTGCTGAATTACTGTTTATATTTATTCCCAGACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAGGTAAAAGTTATGCATGTAATACTATTGCCTAAATTCACCCAAGGTGGAATAATATTGGATACAGAAGCAGCTATCAAAACTAAGTTAAAAGTATTACTCTGGTGAACATGCGACTTTTGAACTATTTTTATTGCTCGTACTTCACTCATCCAACCTTAATTTATTTGTGCTTCTGCTAAAATCCTGCAAAGTTTCTTTAGAAGTACTTACCCAGAGGCCAAGACTGTTAAAATATTTTTATTGCTTGTAATTCACTGGAAATTATCTCAAATGATCATGTCATTTCATTTCTGTTATTGTGTTAAGATTTCTGCTAATCTTACTAACTGTTCTTTTCACAGTAATTGTTAAGTACTTTATGTAAGTCTTGCTTCTTTCTTGGACCACAGTTTCTTGCAACAGGAACAAGTGACCTTCCGACAGCCTAATATACCTAATTCTTCTCCGCACAGCTTCAAAATGCTTTTTTGACACAATGAAAACATTTTAGATATTATCCTAACACAATAATGCATGGCCTTCTAATCGCCTCAAAAGCGATTCCTCCTCGTGTATTATGCTAGTTATCTTGGCCTGACCTGCAGAGCTGAAAAATTGAATGGTGAAGGGTCTAACCACTAGGGGATAAAGTTTTACAAGGCACAAAATGTTTAACTTGAACTGACAAGCATACCCATACACCACCTTATAAGGTGTGCAACCCTCCATCCCTTCTGATGTGTGATGGGTTCTACATTACTTGCTTACCGATGTCACCCTAACCTTCTTTGTCTTCACCTGGACTGGCCATTCCATTGTTTTATAAGGCACTTGCTAAACCCGGTTTACTATACCACCTAAAGTATAATGCAATAAGATTTCTTCTTTCAGTCTCAAACCAATAGGTTCTGCCAATCCCCTCCAATAACTTGAGTAAACGAGTTTCCCAAACAGTCAGAAAGATATCTCTCACCAATAATCAAATTTTTATTGAACTTTGCAGTCAAGGATCGCTCTCTCTCTCTTTCTCCTTTTTTTCTTTGGGATCTATAAATAGTAAGTGCAGTCATTAATAAAGGGGCACCAAGGGTTTTCAGATCCTTCTATATCGTCCAAAAATACAAATAATAATAAAAAGTGAGTTCTATGAATGAGAAAACGACCAAATTAGTCGTTGATGTATACGGGTTGAATTATTTTGGTCCTTTATTGATAGTGTCAATTGAGTAAGCCTAAAGAGCAAAGATGATTGAGAATCACTCTTGAACAGCTGAACTCAAATCTTCCAAGGAAGAAGATGAATTGAGAGAGAATTTCTTATTGATCTGCAGATTGATTCTTTACAATGAACTCAACGAGTATATGTAAGAAAGGACAACTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACAAATCACGTGTCCCACTTAACAGACTCAAATACAAAATTAACAACTAATAAGATTTCTAATCAATTGACATGTAACAATATTCCCCCTCTTCATCAAATCCTTGAGCTCAAGGATTAAAATGTGGAAACCGCTGGGTGAAAGACTGATAATCCTCTCAAGTGCTATCGTATTCAGACGCATTGAACCATTTAACTAATTACTGAGTAGCAGGCCTGCCATGCTTCTTGATAATCCTCCTATCAAGAACTGCTTCTGGTGTCAAGAGGATGTGACCAGCATCAACATGAACCTCAGGGAGGGTAGCAGAAACTATATGGGACCCTAACTTCTTTTTGAGCTGAGAAATATGAAAAGTAGGGTGAATTCGAGAGGCAGGGGGTAATTGGAGAGTGTACACAACTGAACCCACCCTTGCTATGATTCGAAAAGGACCAAAAAACTTGGCTGAAAGTTTTTGGAAACTATGAGATTTCAATGATGTCTGTCTTTAAGGATGTAACTTTATGTAGACCCAATCCCCAATTACATAAGACCTATCAGTTCTTCCTTTGTCGGCCTGAGATTTCATTCGACTTCGGGTCTAGCTAAATGAGACTTTAGGCATCTCAAGGTAGCCTCGCTAGCTTGTTAGCATGTCAAGTTGGGAGTCGAAAGGCATGTATGGAAGGAGCGGAGGAGGTGTTTGACCATAATCAACAACATAGGGTGTCATGTTAATAGCAGAATGAAATGAAGTGTTGTACCACCATTCAGCCAGAGCCAACCATTGGGGCCATTCCCTAGGTTTCTCAAACATCATGCACCTGAGATAACACTCAAGACATCTATTAACAACTTCAGTCTGCCATCTGTTTGAGGGTAGTATGCAGAAGTGAGCAAGGTAACCTTCTGCAATTTGAACAATTCTTTCCAAACCTGCTTGTAAATACTGGATCTCTATCAGAGACTATAGTTTTTGGCATGCCATGGAGTTTGAATACCCCATTCATGAAAGCCTGAGCTACCTCCACTGCAGTATAAGGGTGCCATTAAGTGAGCTGCCTTGTTCTACCTGTCAACTACCACAAAAATAACCTCATGTCCATCGACCTCAAGGAAGACCCTCTATAAAATCCATCGAAATATCTTGCCACACTTGTTTGGAATTGTTAGAGGTTGAAGAAGGTCCGCTATGCTACATTTTCACCCTTGCACCTCTGACAAACATCACAACACCTAACATAGGCATAGACATCCTGTTTCATTTTCTTCCGGTAAAAATCCTGTTAAAGCCTCTGTAAGGTGGCTGTTATACCAGAATGACTTCCAGTAGCACTGTTATGGTATAAAGCTAATCTTTCCTCACTGTAGCCACAGAGCCTACCATCATCTTACTTTTTCTACTCAAGATCATAGCATGATAACTGTAGTAAGGTTTAGTAACAACTGTAGTCTGAATGGAAGTGATTAGTTTCTGTAGCACAGGATCCTGCAACCACGAGTTCTTAACATCTTCAAGTAGTTGAGCTTGAACCCCAGAGATGCTACAAAGCTGGATGGGTTCCTCTCTTCTAGAAAGAGCATCTGCAACAACATTGTCTTTGCCTTTTTTTATAGGAAATAAGGTAGTCATAACCAAGTAGTTTGACCAACCACTTCTGTTGGCCAGGGGTGGTAATCCTTTGCTCCATCAAATATTTGAGGGGTTGATGATCAGTTTTAATTATAAATTGCCTACCCAAAAGATAAGACCTCCACTTCTGGACAGGTGACACTAGTGCTAACACTTCCCTTTCATAAACTGATAGGGCTTGATTCTTCGCATACAACCTTTGACTAAAAATGCTATAGGTCTGTGATTTTGTGCAAATACAGCACCAATACCTCCTATAGAGGCTTCCGTTTCCACTATGAATTCTGTGGAAAAATCTGATAATGCTAACTCTGGTGCTGAAGTAACGGCCAGTTTGAGCTTGTCAAAAGCTTGAGAAGCAGCTTCAGTGCATTTGAGATTTCCCTTCTTCAATAAGTCATTCAAGGGTCTTGCTATAATACCAAAACTTTGGATAAACCTCATGTAGTACCCTGCAAGTCCCAAAAACCCTCTCAATCCTTTTAAAGTTGTAGGTTGGGGCCAGTTCACAACAGCATCTACCTTGCTTCCATCCATAGCAACCCCTTCTCGAGAGATGATATGACCTAAATAGTCAATTTGTTGAACCCCAAATGCACATTTGATCTGCTTCGCATACTAAACATTTTCTAGAATAATCTTGAAAGTTTCCCTCAAGTGAGAAAAGTGATCAGTCCACTTAGAGCTGTAGACAAGGATATCATCAAAGAATACTAAAATGAACTTTCTGAGATGAGGAAGAAAAATCCGATTCATCAAGCTTTGAAATGTGGAGGGGGCATTGGTTAGGCCGAAAGGCATGACCATAAATTCATAATGAACTTGATGGGTTCGAAAAACAGTTTTTGGGATGTCAGGCTCAAACATCCTAATCTGATGATAACCTGATCCTAGATCCAACTTAGAGAAATACTTTGCACCATGTAGCTCATCTAACAATTCTTCAATCAATGGAATGGGAAACTTATTCTTGATAGTACGTGAATTTAGTTCTCTGTAATCAACACACATTCTCCATGAACCATCCTTCTTCTTAAACATGACTATGGGTGAAGAATATGGACTGGTACTAGGCCTTATCACTCCTGAATCCATCATCTCATTGACCAGCTTCTCAATCTCATCCTTCTCAATTGCAGCGTATCTGTAGGGTCTAATGTTGATAGGAGAAGTGCCTTCCTTCAAGATGATTCTATGGTCATGATCTCTTGATGGTGGTAATTCAGTTGGTGCCTTAAACAAATCATTGAAATCTTGCAGTATCTCCTGTATGTCAGCTTTATCCTTACCAACTTCATCACAAGTGTTTATAGAAAAGAAACTTCCTGGTTCTCCACTGTACTCCTCCCCTAAATACATACCCACAGAAATCAAGCATAGTTCTGCTGGTTTAGCTAACAATTTATCCATGCCACTCTGCTGTACCAGCTTAGCTGCCGGAGGTTTGATACCCCTCAGAGACACCTTGTGTCCCATGATACTGAACTCCATTTTAAGTTGTTTGAAATTCCACGTTATATCCCCCAAGGTAATTAACCATTGGACCCCAAAGACCATGCTACACCCTCCAATAGGTAGCACTAACATGTCAGAATCGAATGAGACCCCTTGCATTTTCCAAACCAGCTTCTTACATGTATATTGACAATGCATCTTGTTTCCATCAGCCACAGACACAGGAAAAAGAGAGATAGCAGTTAAAATACATCCTAACCCTTTGGCAGTGTTTAAATCCAGAAAATTGTGAGTACTCCCTGTATCAATTAGGACTTGTACAGCCTTGCCCTTAACAGATACTGTTACTCTCATAGTCCTAAAGTCATGCAGTCCATTCATGGTATAAACAAAAACATGAGGCAGAATAACCCCCTGATCATCAGTCTACAGGGAGTCGCCTATCATAGTCAAGAATTCAGCAGGGTTTGCAACAACTTCCTGCTCTACTTCCTCAACACCCTCACTGTCCTCCTCTACTTCTATAGAAAATAATTGTTCTTCTTCTTACGAACATGGCCATACGCATACTTTTCATCACAATTAAACATAGTCCTTTGCTCCTCCTTTCATCCATCTCATTGACATTTTTCAGGTTAGGTTTGGGGTTATTAGAGAAGGTCGTGGAATTTTTGGAAGGGTTTGGATGACTTCTACTAGATTGGTAGGTGGATCCATAAGAAAAAGTGGGAGGATTATCAAATCTGGGAGTGGTTTTGGGATTGGAAAGCACTGAAGATCCAGAAGATACTTGCTGCTGGACAAATATGGCCTGCTCCTGTATTCTAGCTAAGTTAACTGCCTTAGCTAGTGACCTTGGTGCAAGCATTTTAACAGGTAAGCCAACTTCTGGTTTCAATCCTCTAACAAAGCAACTAACAACCTGATCTTCTGATAGTTCAACCCTAGTGAGTAATTCATCAAAGAGATTGACATAGTCTTGAACAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCATTGGATCGTCGAATAGTTCAGCCCCAAACCTAGCATAGAGGCTTCCTACATACTCAGTCCACCTTGGCCATTCCCTTGACAGCCTGTGCTTCACATAAGATTGGTGCCATTGGAGTGCCTTGCCCTCGAAGTTGCAAGATGCCAGCTTAACTTTTGAGTCTTCCGGGGTTTCGTCTACATCGAAAAAATTGTTCACATTTGTAAAGCCATTCCTTCAGTCCTTGTCCATCAAATTTAGGGAAATCCATCCGGTAATTACGGGTTGGCAATTGATAATTTCCAGGTCTATTTTCGCCCTTAGGAATTCCTTCAGCTGGGGGTCTAACACCGCCATGGGTGTTCATAGATGTTGCCAGCAATCTTCGAAATTTGTCAATGGCCTGAGCCACACTAGCATCCACAGACTGTCGAATCTTCGCGACAGAGCTGGTTACTCCTTCCATGGAGTGTTTGAGATTGTCAACCTCCTTGCGCAGCTCCTGCATCTGAGTGTTGTTATCTCCCATTGCCACAAATCAGAGAAATCTCTTGCTCTGATACCAATGATACAGTGTCAATTGAGTAAGCCTATAGAGCAAAGACGATTGAAAATTGCTCTTGAACAGCTGAACTCGAATCTTCCAAGGAGGAAGATGAATTGAGAGAGAAGATAGAGAGAAAGAGAATTTCTTATTGGTCTGCAAATTGGTTCTTTATAATGAATTCAACAGTATATGTACGAAGGGACAGCTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACTACTCACGTGTCAGTCATGTGTCCCATTTAACAGACTCAAATACAAAATTAACGGCTAATTCAATTTCTAATCAATTGACATGTAACATTTATATATACCTCCTTATTGAAATAGTCCTTGATGTATATAGAAAGCTGATCATATTGATCCTTAGCCCTAAAACAAACAGTAAAAGTAAAAAGTTCCGTTAAATTTAATTGTGGGTTACTTTGAAATTGACACCTGACAGACCCTTTCTCCCGCAATCTTCTTCCTTTCACCATTAAAGGTATGGTCCATCTTCAGTCCACCCACCAGCCATTCTTATAAGAACAGAAAAACACACTACACTCATTTCTTATCTCCCTCTAAACAATAATCCCCAGCAGCTTCCATTTTCATATATACATATATATAACAAAAAGTGAGACTGCTAAAACAAATGTGACCTAAGTAAATCAGATGATACATTCCATTCCTCTTCCCAGGAAAACTCCAAAACCAACTCTCTTCAAATTTTAACCAACTATTCTCTCTTTTTATAGCTAGATATGGGAAGAATATAGCTTTCTTTTTGTTTTGTCCTTTTTAAAACTAATGATTGATATACAAAACGTTACCTTTATCAAAGAAAAAAAAAATGATAGTCTTTTCATGTATTTTTCTATATCATTGTTCAGATAGAAGGGTGAAAACTGAATGGACAGAGGTTAAAAATCGATATCTTCACAATGTTATTTGAAAATTGAAGAGATTTTTGTGTGTCAAAAAGGATTTTGGTAATGAAAAGAAGAATAAACCAACTGAAAATTGCAGCAGAATTGGCGTAAGAAAGACGATTGAGGTAGAAGGGGTCTGCCACTTGTCAATTTCGAGGCACCCACAAATAAGTTTAACAGAAATTTTCATTTGTACAGTTAGTTTTAGGGTTGGCAATCAAAATGATCATCTTTTTATATACATCAAGGATTATTTCAATAAAAATAAGTATATATAAAGGACCAAAATAGTTCAATCCGTAAACATCAAGGACCATTTTGGTCATTTTCTCTACTACGAAATATGAACTATACAATAGCCTACTCATCTAAAGATCATATGAAATGAGTCAGCTACTCTTATTATATTTCCTTTTGAGTCCAAACAAGAGTCAGTTTCCTTTATGCCTCTTAATTGATTTTCCACTACTTATTCCAGGGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACAGTAAGTCATATTACCACTGCCAATCAGTTGGGCTTTGTAATAGCCTACTTATCTATCCTCAATTATGTTGATTCTGTGAAGCATATGTGGAAATTTTTAGGAAAGAAAAAACAATTGCTTGAAATAAAGCCAGATTTTCATTCACTGACAAGGATTAACCTTTTCCCTGGCCTTTTGCTGGATCTTCTTGTAATCCAATTCACCGATGAATTTCCATCTGGAAGGAAAAAAAGTTGATAATGTGAATCAAAGTTCTCTTGAATAATAATAATTATATTGGAATCTCTGTGATATCCAATGGAACCTTCGCCTTTGAACTTTAAACTACATATAGGAAATGCATTTCACCTCACCAACCGTTGGGATGTAGTAATCATAAATTTCTAAAGATAAGTAAATGACACTCTCTACCACTATAAACCATCTTTCCTGTATATCTGTCTTTCAAATTCCTTTTCTGACTCAAACCATTGAGTTTTTGGGCGTTCATATGGCTACTATCCCACGAATTCATTTCAACTTCAAGTTGCTATCTTGGAGTGTTTAAATAATTTTCCCAACCTCAATAGTTTTCTTGTGCTGTCTTGCATATTTCTGATTGTGACTGCTAAATTGTACTGTATTTTCTATGTATTATATGTGTAAAGAAGCATGAGAGGTTAACATCAACATTTTTGAATGTCTAGCTCAGTGTTATCAAAGGCGTGCTTTAAGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTTGCCTCGCTTTATGTGCACTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTTCACTGCTAATGAGCCTCATATGAAGAAGTGACACTAAACAATTAATATTTTATTATATCATAATTTTTTTTTCAATTTCTTTGGTCATAAATGTGTCATTCATGTTCATAATTTCTAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACGCTTTATTTCCGCTTTGCGCTTAAAGTCCCCACAGACCTTAAGAGCTTTTTTGTGCTTTTCGCCTTTGATAACATCACTCTAGCTCCAGAACAGTATGTACATTATGTTGTTTGACTACTTAATGTCTCGTCAACTAAAAAGGCTGAAAGGCAGAATATTTTAGTTATGAATATATGGCATTTATGAAGTTTGTGAGATACCTATCAAACTATGTGCAAAACTTGCTTGGTAATTGTTGCTTCCAATTGCACACACTAGTGTACGTGATCGCACAAGTAATTTAGTGGCTCTAAAAGAGCCGGATTATCGAACCCATAAGACTTGTCTATTAATTATCTTACTAAATTATACTAGTCTAATTATTTATTCAAGAGTGCCAAAAGAGTTTGATTTATAAATAAAGAATGCAAGAATTGAATACTAAGATTACCTTTGTATGGGGAAATTTCAGGGCTGCAACATGCTTAAGGTTTCATGTATCACATCTCATGTGATGAATCAACTATGGTTATCAAAATTACTAATTTACATGGTTGATTTTATGATCATAACTTCCCGACCTTTAATCGCCTACTCCAATTGACTTTCTAACTACATCTTTGAGCGGAGATAGACAAACTCAATTGGCGAGCATTTATATTTCATCCTATTTAGTAGCTAAGCTCAATGTTCATCTCAATTTTAATCTTGAACATGAATCTAAACAAGTGATATGCAAGAGGGATCGAGCTCTTTGTATTCTTTGGTCTATCTATCCCTTCATCTCTCGAGTCCAAGAATAGACAATATGTTTATTTCTATGGTGATCAAGCATGAAATACTAAAACCAAAATTCAAAAGTAATTTGAGTGAAGCCAACATTAATTCAAAACAATCGATGTTCAAAAATTACTCGTAGTCGCAACCCCACAACAAGGGTCTTTAGCTACTAATGTCTAAGAAAGCAGAAGAAGAAAAAGAACCCTTACAGTGAAATCTATTTCTTGCCTTCTGCACTTGAAAAAGAAGAAGCTCCCCTACAAAAGAACCCTAGGGCTCTATTTATAGTTGCGGAAAATAATCCCTCCTAATTGATTCGGACTCCTTAATTTTCAGAATTTTCTTCGGGGTGTTCGTGGGGCAGCTCGCCACCATAGCGCCGAGACTGCTGGGGCAGTGTGTGAACAGTACGGCAAAAGTTGGCTTCAGTAGTTTAGGCCCTGGCGCGGTGCACCTAGGCTGCTCCAGGGGTGTTTTTCTTCAGTCATTTTTCCTTCACTCCCGTCACCTCTTATTTAGCTCATATTCCTTTAGGAGCCCCTACATGTGCTAATCATGTAGGTTAAGTGCGCATTCATTGGAATACTTTATCAAAACCAGTGTTATCAAAGGCTCTCGTAAGCCTTAAAGCGAGCTCAAAATGTGTTGAGTGTTTCACCTCGTTTTATGTGCTCTTTAGTGTCGTCATCAAGGTTCTAAGGTAAACTTTTCCTAGCCAATGAGCCTCTTATGAAGAAGTGAAACGAAACGAAATAATTAATATTTCACTTTATCGTAAATTTTTTTCAATTACTTTGGTCATATATTTGTCATTCATGTTTATAATTATTATTTTTTGGACTAAACATATATATTTGTGTTCTTTTCTCCCTTTGCGCCTTTTTTCATAAAGCACATGCTTTATTTGCGCTTAAAGGCCCCATGGACCTTAGAGTTTTTTGCGCTTTTCGCCTTTGATAAACTGATTAAAACACAACAATTATCATAAAAATGTCCTCGAAACATAAGTCACATGTGGGTAAATCGTAGTGTATGGGCATATAAATATGCCCAAGATCAGTAATTCCTTAAATCTTGCTCTCGGATGATCAAGTCTGATTCCTTCCAGAGAGGCACCATTGAGTTTTTTTATACTAGAGTTTAAGCAATGAATTTCCATGAGCACATCATCCCATATTAGCGAATCTGATTCATGTCTGTGATCTTTATTTGCCAAAATGTCTGCACACTGATTTGCTCCCTCCAGATGTTGATAATATTTGCTTTCTCGACTTCCGGGTATCTGCAATCCTCGATAATAGCCTTGGAGGATGAAACTGAATGCCGTCTTCGTTGATAAGCTTAACAAGAAGCAAACAATCTGTTTCCACTTCTAATTATTTTATCTCACTGCCTTTGCTAATTGTAGCCCTTGTTCGACTCCTATTTCCGTAAGGAAGCTTGAGTTAGGTTTTATCTTACATGAATATCCCATTATCTTTTTCCCTTGATTATCTCAGTCTTCCAAAAGCAGCATCTCCAGTTTGGGTTTTCACATTGCCATCAATGTTCAGTTTAATCTTTTCTAAACAAGGAGGAGACCAAGTGAGTAATAGTCTTAACTTCAGATAAGAAGTTCATCAAGGAAATATTTCAACAATTTCCCAAGCATAATCACTATTATGTGCAAAGATCTGTTGATGGACGTTATTTTTTCCAATCAAATTTCTATTTCTTTCTTTCCATTTGCCAAATAGATGAAAATGTTAGTGTAACACAGTAGGAGATCAATCAATCCATTCAAGCATAAGCATAGCATTCATTTCATGAAATCAATCTCATTTTGGGAGTGGAAACTATCCCAAATTTATCTACATTTTTTACTAGTCCTAATAATATGTGAAAAGTCCTCCTTTTCATCATCACATCATTCGCATTTGTGGAAGTCAATTATCTTCCTAGTGGATCTAAGGTTGTTATGTCTTACAACCCATATGAGTTTTTTAGAAAAAAAAAAAAAGAGGGTCTTACAAGTCACATGAAGCGTCTTATTTTCCCTAGATGAAGTTTCCCTGGTCAATGTCCTATCATTTGAGTTGTGTATCCAATTATGCTTCTGTTGATCCTTGGACTAATCTCCTTTTACCACTGCATTCAATATAGAAATGTCTGATGTAACAAATTTAACCATAGTAGTTAACTGATGATGGTATGTTTTGGTATGTTTGCCTAGTATATAGGGAAAGGGATGAAAGCTTGAAGGGTGTGATTCAGCTCTGTTGCTTAATATTCTCTGCTCGCCATTTTATTTTATTCTAGTTGGAACTAAATATTTCTCTCTTTCTCTCAGCATTTGGAGGGGGCGAAGCTTGATGGTGCCAATTTACTGGGTGCAATCAGGTGACACACAGATTTGTTCTCATCCCAAACCTCTACAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</genome_strand>
        <mrna_strand>ATTTACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGTCTAATAGGCTGTAGCTTCTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG..............................................................................................................................................................................................................................................................................................................ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA......................................................................................................................................................................................................................CATTTGGAGGGGGCAAAGCTTGATGGT..................................................................................................................................................................................GCCA-ATTTACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGCAATCAGGTGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACA...............................................................................................................GATTTGTTCTCATCCCA-AACC.....................................................................TC-TCCCAGAGCAACAT-TAAA....................................................GAAGAGAGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAGGAATTGTATAGCAATAGAATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGTATGTGTGTAAACCCAAATTGTTTCAAACCATTCTGGCCTTGTAAGAATG-TTTAACTTTTCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424919" ref_strand="+" ref_description="SGN-E424919 [STM-44-E8]">
      <seq>tatatttaacaggaggcaaatcgccaaaatttgcagggtatacaggaaggacctgggtcctggggtggtcacccaaatatgtaaggatgaagttacaaaaccccttagcatgagtcaactcaactcaacattcctatgaactttgcaaataacttgacagaatcaaaataacaggtcagtatgacaatccttgctagaaacatcagttcagtggcattcccaaatcactccttcaatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="243568" stop="244415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="243868" g_stop="244115" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E424919" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="243868" e_stop="244115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTAACAGGAGGCGAAAAGCCAAAATTTGCAGGGTATACAGAAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAAGATGAAGTTACAAAACCCCTTGAGCATGAGTCAACTCAACTGAACATTCCTATGAACTTTACAAATAACTTGACAGAATCAAAATAACAGGTCAGTATGACAGTCAATCCTTTGCTAGAAACATCAGTTCAGTGGGATTCCCAAATCACTCCTTCAATCTGTA</genome_strand>
        <mrna_strand>TATATTTAACAGGAGGCAAATCGCCAAAATTTGCAGGGTATACAGGAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAGGATGAAGTTACAAAACCCCTT-AGCATGAGTCAACTCAACTCAACATTCCTATGAACTTTGCAAATAACTTGACAGAATCAAAATAACAGGTCAGTATG--A--CAATCC-TTGCTAGAAACATCAGTTCAGTGGCATTCCCAAATCACTCCTTCAATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428159" ref_strand="-" ref_description="SGN-E428159 [STM-49-F22]">
      <seq>atcagtactcgttatctggaagcaagcgaccgttttcagctgtagtacataatccacatcatatggattccagtggagtttctagagtgcagttagagagctctttccttactgcaaaccgaagtatgttgccacgtagtcgtggacctctgggtacaccatcttttgcctattatggccagcttggcagtgaccattcaccaggttcagtttatggggtcgaaagctttccgaattcttttcagtctcatgaccgcgacccttatggtggaaatcgtagcatatatcgtagatattgaaggagtgatttgggaatgccactgaactgatgtttttagcaaggattgtcatactgacctgttattttgattctgtcaagttatttgcaaagttcataggaatgttgagttgagttgactcatgctaaaggggttttgtaacttcatccttacatatttgggtgaccaccccaggatccaggtccttcctgtataccctgcaaattttggcgatttgcctcctgttaaatatgaggggatgtcatgaaaaaaaaaccatatatgattgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="246879" stop="243567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="246579" g_stop="246536" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="246535" i_stop="246426" i_length="110">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="246425" g_stop="246346" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="124" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="246345" i_stop="246230" i_length="116">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="246229" g_stop="246150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="246149" i_stop="246038" i_length="112">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="246037" g_stop="245997" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="245" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="245996" i_stop="245022" i_length="975">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="245021" g_stop="244973" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="294" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="244972" i_stop="244111" i_length="862">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="244110" g_stop="243878" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="522" r_length="228" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E428159" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="246579" e_stop="246536"/>
          <exon e_start="246425" e_stop="246346"/>
          <exon e_start="246229" e_stop="246150"/>
          <exon e_start="246037" e_stop="245997"/>
          <exon e_start="245021" e_stop="244973"/>
          <exon e_start="244110" e_stop="243878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAGGTTCATACCATTGTCTGTCATTGTGAATGGACGTCTTCTGCTATCATATAAAGTAGAATAACGTCTTGCCGATACTTTACCTCAGTAATATTGACTCTGTACTTTTTTTCATTTAGTATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAGGTGAGTTCAACATGCAACTAGATGGTTTTTGAGATCATTTTCGACTCAATAGTTTATGCCTTATTGAGTATGTCTATTTTGGTTAAGTTGTCTACTTTTTGGGTCTTATCAGGTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAGGTACAGAATATTGAATGATCTGTGATCATTGTTACGATTCACCATTTATCATGGCAAACATTTTGTTGTTCATTGGGAACCCCAGTTATATTACATCTGCCACTCTTGTCATGCTCTAATTTTGTGCTATTGTTGTATGTTCTGTGCTTTTGAGTTTAATGGCCTGAGAACTGGGCGTGTTCTATTTAGATAATTCATTGCTTGATATTGCAAGTGGATAGTAGTTTATCTCCCTGTTCCCGAATCAGATGTTCTGTAGAATACATTTGCAATTGTTGGTGAGATGCAACTTCTTTATATGAAAGTACTAACTGCGGGCCATATCCAAGTCCTCCGGAAAATAAATTGGAGGGGAAAAAATGTTTCCAGTATGGCATGCAATAGCTTTCCTTGGGAAAAATGGCATGTAAACAGACTAACACTATAATCTTTTAACTTCATTCGATGTAACCAATTCTCAAAAAAATAAAAATAAAATTTCATTCTGCTCAATGACCTAGGATTTTCATAATGTTATCTGGTTAAGAAATGGAAAGCTTGTTCCTAAATAGCATTATGTTTTTAATTTTTTTCTCATATTCTTGATTAGCATGTTTACTTTTGCATAGTTACTTCAAGTGGTTTATACAACCTGATTATTCACCTGCAAGAAGTTCTTAAGCTCAGGAAACTAACTCCTCAGGGAAATACATCTTGATGATACCTATTTTGTAAAGGATGATAAGCTCTAGCTATTTAGCTTTGTTGCTCAACTAGAATTTCTTAAATGTATTTGATAAAGTACCATATATACATTATTATTAATTTATTTTAATCAGACCCTCAGCCTAATTTTTTCTCCTTTCTGAGTTGTATTTATAGACAATTATCCTTTTTTTTTTGAACATTAAATGAAGATTGAGATGCTAGAGACTGACGTTTCTGTGTTTTAGATCGGCACATGGTTTCTGATCGTGGTTTTTGTTTGTCTTGCAGTCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGATGTGAGTAAACTTCTTTTAGCATCTTATTTGGCTTTTGAACTGTTTCTTTGAGCAGTCTCAGCCAATTCAGTAATCAGTATATTATGTTTGCTTCATTTTTTGAAACCAGTCCTGCCTGTCCTCGCTATAAAGTTAGCAGATGAGGTGTTCCTAATGCCCAGATATGTATATGGAACCTGACTAATGCAATCATAAGTTAAGGGTCGTCTCAAATGTTGGTTTCTTTTCCTGCATGTGTTCCTTCATTTGCTTTTTCTGTTAGTTTGGGTGGGTAGGTGGGTGGTCACAAGAGAGTGCTCAATGAAATATTTCCTTCAATCTGATCTAAACCAACAAAGCCACATGGGGATGCTCTATAGGACTCTTGATTCGCCATTTGTCAAAATTCTTGTTGTAGTGTTTTCTTTAAAGTTGGGAGAGCACCATTCGAATGTGGTGTGTCAGCAGTTTATTGCAGATGAAGGCTCAAATTGCTATGGTGATCTTGGGTTTGCGTGAACTTTCTATCAAGTTCACATTATCATACCGTCTTTGGATCTTGTAGAAACTAGATTCACGTTTGTCATGCATCTTATTGTTTTTGGTTGAGTTTCTTGTTAGTATAGTAGTTCTATCTTAAACACATGGTCTCCAATGTCTTGGAATTCCTCTTTAAGGTAGGTAAATTTATTATACGTCTAAGCACTGTTTCAACTTTAAATTTCTGCTGAATGTTATATGTAGTAAGTTGGCAGAAGAAATGAAATATAGTCAAAAGCTGCCACAAGTATCTGCTAATGATGTGCTGATCTAATCCACTGTTGATCTTAGTTAACTTTCATTCGACGTGATCTTTATCGTCATTCTTCGTTGGTTTCTACAGATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</genome_strand>
        <mrna_strand>ATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCATATGGATTCCAGTGGAGTTTCTAGAGTGCAGTTAGAGAGCTCTTTCCTTACTGCAAACCGAAG....................................................................................................................TATGTTGCCACGTAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG................................................................................................................GTTCAGTTTATGGGGTCGAAAGCTTTCCGAATTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATGACCGCGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGGAGTGATTTGGGAATGCCACTGAACTGATGTTTTTAGC-AAGGA-T---TGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGCAAAGTTCATAGGAATGTTGAGTTGAGTTGACTCATGCTAAAGGGGTTTTGTAACTTCATCCTTACATATTTGGGTGACCACCCCAGGATCCAGGTCCTTCCTGTATACCCTGCAAATTTTGGCGATTTGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610087" ref_strand="+" ref_description="SGN-E610087 [57241]">
      <seq>tagaaagctctttccttactgcaaaccgaagtatgttgccacatagtcgtggacctctgggtacaccatcttttgtctattatggccagcttggcagtgaccattcaccaggttcagtttatggggtcgaaagctttccgaattcttttcagtctcatgaccgcgacccttatggtggaaatcgtagcatatatcgtagatattgaaggagtgatttgggaatgccactgaactgatgtttctagcaaggattgtcatactgacctgttattttgattctgtcaagttatttgctaagttcataggaatgttgagttgagttgactcatgctaaggggttttgtaacttcatccttacatatttgggtgaccaccccaggacccaggtccttcctgtataccctgcaaattttggcgatttgcctcctgttaaatataatctattgtcatgaattttcaagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="246531" stop="242982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="246376" g_stop="246346" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="246345" i_stop="246230" i_length="116">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="246229" g_stop="246150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="111" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="246149" i_stop="246038" i_length="112">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="246037" g_stop="245997" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="152" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="245996" i_stop="245022" i_length="975">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="245021" g_stop="244973" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="201" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="244972" i_stop="244111" i_length="862">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="244110" g_stop="243878" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="428" r_length="227" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="479"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E610087" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="246376" e_stop="246346"/>
          <exon e_start="246229" e_stop="246150"/>
          <exon e_start="246037" e_stop="245997"/>
          <exon e_start="245021" e_stop="244973"/>
          <exon e_start="244110" e_stop="243878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGCTCTTTCCCTACTGCAAACCGAAGGTTCATACCATTGTCTGTCATTGTGAATGGACGTCTTCTGCTATCATATAAAGTAGAATAACGTCTTGCCGATACTTTACCTCAGTAATATTGACTCTGTACTTTTTTTCATTTAGTATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAGGTGAGTTCAACATGCAACTAGATGGTTTTTGAGATCATTTTCGACTCAATAGTTTATGCCTTATTGAGTATGTCTATTTTGGTTAAGTTGTCTACTTTTTGGGTCTTATCAGGTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAGGTACAGAATATTGAATGATCTGTGATCATTGTTACGATTCACCATTTATCATGGCAAACATTTTGTTGTTCATTGGGAACCCCAGTTATATTACATCTGCCACTCTTGTCATGCTCTAATTTTGTGCTATTGTTGTATGTTCTGTGCTTTTGAGTTTAATGGCCTGAGAACTGGGCGTGTTCTATTTAGATAATTCATTGCTTGATATTGCAAGTGGATAGTAGTTTATCTCCCTGTTCCCGAATCAGATGTTCTGTAGAATACATTTGCAATTGTTGGTGAGATGCAACTTCTTTATATGAAAGTACTAACTGCGGGCCATATCCAAGTCCTCCGGAAAATAAATTGGAGGGGAAAAAATGTTTCCAGTATGGCATGCAATAGCTTTCCTTGGGAAAAATGGCATGTAAACAGACTAACACTATAATCTTTTAACTTCATTCGATGTAACCAATTCTCAAAAAAATAAAAATAAAATTTCATTCTGCTCAATGACCTAGGATTTTCATAATGTTATCTGGTTAAGAAATGGAAAGCTTGTTCCTAAATAGCATTATGTTTTTAATTTTTTTCTCATATTCTTGATTAGCATGTTTACTTTTGCATAGTTACTTCAAGTGGTTTATACAACCTGATTATTCACCTGCAAGAAGTTCTTAAGCTCAGGAAACTAACTCCTCAGGGAAATACATCTTGATGATACCTATTTTGTAAAGGATGATAAGCTCTAGCTATTTAGCTTTGTTGCTCAACTAGAATTTCTTAAATGTATTTGATAAAGTACCATATATACATTATTATTAATTTATTTTAATCAGACCCTCAGCCTAATTTTTTCTCCTTTCTGAGTTGTATTTATAGACAATTATCCTTTTTTTTTTGAACATTAAATGAAGATTGAGATGCTAGAGACTGACGTTTCTGTGTTTTAGATCGGCACATGGTTTCTGATCGTGGTTTTTGTTTGTCTTGCAGTCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGATGTGAGTAAACTTCTTTTAGCATCTTATTTGGCTTTTGAACTGTTTCTTTGAGCAGTCTCAGCCAATTCAGTAATCAGTATATTATGTTTGCTTCATTTTTTGAAACCAGTCCTGCCTGTCCTCGCTATAAAGTTAGCAGATGAGGTGTTCCTAATGCCCAGATATGTATATGGAACCTGACTAATGCAATCATAAGTTAAGGGTCGTCTCAAATGTTGGTTTCTTTTCCTGCATGTGTTCCTTCATTTGCTTTTTCTGTTAGTTTGGGTGGGTAGGTGGGTGGTCACAAGAGAGTGCTCAATGAAATATTTCCTTCAATCTGATCTAAACCAACAAAGCCACATGGGGATGCTCTATAGGACTCTTGATTCGCCATTTGTCAAAATTCTTGTTGTAGTGTTTTCTTTAAAGTTGGGAGAGCACCATTCGAATGTGGTGTGTCAGCAGTTTATTGCAGATGAAGGCTCAAATTGCTATGGTGATCTTGGGTTTGCGTGAACTTTCTATCAAGTTCACATTATCATACCGTCTTTGGATCTTGTAGAAACTAGATTCACGTTTGTCATGCATCTTATTGTTTTTGGTTGAGTTTCTTGTTAGTATAGTAGTTCTATCTTAAACACATGGTCTCCAATGTCTTGGAATTCCTCTTTAAGGTAGGTAAATTTATTATACGTCTAAGCACTGTTTCAACTTTAAATTTCTGCTGAATGTTATATGTAGTAAGTTGGCAGAAGAAATGAAATATAGTCAAAAGCTGCCACAAGTATCTGCTAATGATGTGCTGATCTAATCCACTGTTGATCTTAGTTAACTTTCATTCGACGTGATCTTTATCGTCATTCTTCGTTGGTTTCTACAGATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</genome_strand>
        <mrna_strand>TAGAAAGCTCTTTCCTTACTGCAAACCGAAG....................................................................................................................TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGTCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG................................................................................................................GTTCAGTTTATGGGGTCGAAAGCTTTCCGAATTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATGACCGCGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGGAGTGATTTGGGAATGCCACTGAACTGATGTTTCTAGC-AAGGA-T---TGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGCTAAGTTCATAGGAATGTTGAGTTGAGTTGACTCATGCT-AAGGGGTTTTGTAACTTCATCCTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTCCTGTATACCCTGCAAATTTTGGCGATTTGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243123" ref_strand="+" ref_description="SGN-E243123 [cLEE-2-K9]">
      <seq>tttaccttcctcatggattgaagaaaaagtgcgagactactttggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgcctttgtcaattatataagccgcgagtctgctcttgcgtgcattgaaggattcagtcatgaaccagctaatgaaagcggatccaaggtaagcattaaggtatctcttgctaaacccatgccaaagagtaagcaaactaaacgtgtaacccttcctactagaagggaacctccggagaagaagaaaatacaggaccattccatcttgaagaggcatgaacccagcagaaaggtaaactacatgagaagatatgatgaggatcacagagttgaaggatcttcttctacaaccaatgaacttctgcacctcttgagacaacaagggccagttcgtcagctccattccggtttgaacatgggtattaaccatcagtactcgttatctggaagcaagcgaccgttttcagctgtagtacataatccacatcgtatggattccagtggagtttctagagtgcacttagaaagctctttccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="250868" stop="246057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="250568" g_stop="250370" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="250283" g_stop="250172" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="311" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="250171" i_stop="248042" i_length="2130">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="248041" g_stop="247883" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="470" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="247882" i_stop="246589" i_length="1294">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="246588" g_stop="246536" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="523" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="246535" i_stop="246426" i_length="110">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="246425" g_stop="246357" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="592" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E243123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="250568" e_stop="250370"/>
          <exon e_start="250283" e_stop="250172"/>
          <exon e_start="248041" e_stop="247883"/>
          <exon e_start="246588" e_stop="246536"/>
          <exon e_start="246425" e_stop="246357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGGGTAATTTCATATATTTCGCTTCTAACATTTTCTCTTCCTTTGCATCATGTCATTAGACATAATTTGTTGGCCTAGCTTTCTATTAAAATGTTCTGCTAGTTGTAATGTGCTTTATATTTTTATTAAGCTAAAGGTTAGTGTAATGTACTTGTTCATGTACTTTTGTACCTCCTAAACTTATTGCTGTTGATATTAAGGGAATAGAAAGCTACTTTGAATACAATGGTGTGTTAGGGTAAAAGAAAAGGTCTAAAAAGCATGAGAATCTGCAATATGTCATCTGCAAGGGACCATGCTACAGCTTAGTGCCGAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCCAGAGCTCTGCACTTCGGATCCACCCCACCCCACCCTTCTTTTTCTTTCTTCCTGTTGTATATAATTGATATCTGTTTTCTATTATTCTTGTCCGAGATCAGGTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</genome_strand>
        <mrna_strand>TTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459484" ref_strand="+" ref_description="SGN-E459484 [cPRO-28-C1]">
      <seq>acaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctaaacccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaagggaacctcgtgaggagaaggaaatacgggaccagtccatcttgaagaggcatgaacccagcaaaaaggtaaattacatgagaagatatgatgaggatcatagagttgatggaagatcttctacaaccaatgaacttctgcacctcttgagacaacaagggccagttcgtcagctccattccggttttgacatgggctcaggtattaaccatcagtactcgntatctggaaagcagcgaccgttttcagctgtagtacataatccacatcatatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="251313" stop="246233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="251013" g_stop="250844" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="250591" g_stop="250370" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="392" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="250283" g_stop="250172" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="504" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="250171" i_stop="248042" i_length="2130">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="248041" g_stop="247883" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="663" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="247882" i_stop="247212" i_length="671">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="247211" g_stop="247205" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="669" r_length="6" r_score="0.429"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="247204" i_stop="246589" i_length="616">
            <donor d_prob="0.550" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="246588" g_stop="246536" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="722" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="246535" i_stop="246426" i_length="110">
            <donor d_prob="0.458" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="246425" g_stop="246400" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="748" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E459484" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="251013" e_stop="250844"/>
          <exon e_start="250591" e_stop="250370"/>
          <exon e_start="250283" e_stop="250172"/>
          <exon e_start="248041" e_stop="247883"/>
          <exon e_start="247211" e_stop="247205"/>
          <exon e_start="246588" e_stop="246536"/>
          <exon e_start="246425" e_stop="246400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGGGTAATTTCATATATTTCGCTTCTAACATTTTCTCTTCCTTTGCATCATGTCATTAGACATAATTTGTTGGCCTAGCTTTCTATTAAAATGTTCTGCTAGTTGTAATGTGCTTTATATTTTTATTAAGCTAAAGGTTAGTGTAATGTACTTGTTCATGTACTTTTGTACCTCCTAAACTTATTGCTGTTGATATTAAGGGAATAGAAAGCTACTTTGAATACAATGGTGTGTTAGGGTAAAAGAAAAGGTCTAAAAAGCATGAGAATCTGCAATATGTCATCTGCAAGGGACCATGCTACAGCTTAGTGCCGAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCCAGAGCTCTGCACTTCGGATCCACCCCACCCCACCCTTCTTTTTCTTTCTTCCTGTTGTATATAATTGATATCTGTTTTCTATTATTCTTGTCCGAGATCAGGTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTC</genome_strand>
        <mrna_strand>ACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAAGGGAACCTCGTGAGGAGAAGGAAATACGGGACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAAAAAGGTAAATTACATGAGAAGATATGATGAGGATCATAGAGTTGATGGAAGATCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTTGACATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTC-AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACCATCAGTACTCGNTATCTGGAAAGCAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCATATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455250" ref_strand="+" ref_description="SGN-E455250 [cSTS-25-D10]">
      <seq>attaaagtgaatttccttggaggaaatgaggccctttttattaaggtggtattcgggtcggtttgcatgtacctacactagtattctatcgtatgcttgctaccttttgccaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgagttttgatctcccatggttttgcctacttcattggcccattgggttctaaaaagtgaactttagaacctcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctgttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaaaataaaaataaatatatatgttttgttcaagactaatgattacccaggtggagttgggagtcaccaagggaacaaaatatgaaagaaccatggtgcaatcgtggtatgggagtttgggggttctgtaaccttgtaaggaaaaagagataagaggatgtatttacctttttatagttcttatgctttctactttgttgnatatgttntatgtttttaatggttattcattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="247606" stop="246390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="247305" g_stop="246690" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="646" r_length="622" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E455250" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="247305" e_stop="246690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAG-AAAA-AAATATAAATATATATGTTTAGTTCAAGAATAAT-ATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGA-GTATTTACC-TTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCC</genome_strand>
        <mrna_strand>AATGAGGCCCTTTTTATTAAGGTGGTATTCGGGTCGGTTTGCATGTACCTACACTAGTATTCTATCGTATGCTTGCTACCTTTTGCCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAGTTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAGTGAACTTTAGAACCTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAAAATAAAAATAAATATATATGTTTTGTTCAAGACTAATGATTACCCAGGTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAATCGT-GGTATGGGAGTTTGGGGGTTCTGTAACCTTGTAAGGAAAAAGAGATAAGAGGATGTATTTACCTTTTTATAGTTCTTATGCTTTCTACTTTGTTGNATATGTTNTATGTTTTTAATGGTTATTCATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453499" ref_strand="+" ref_description="SGN-E453499 [cSTS-20-O13]">
      <seq>aaacgatctcatgaacaaggaattttattcctaagtagagccccctaggctgggaagatgtgcccatccaatcttgtgttggacaggaagtttattatgcttttataccctttcttatttattcgtcttagagattggtttagtgatgttggttaatatgtccttcggtagttaaaggtattttggtgaagagggtcaaatgcttctttagttactctaggggtcggtttgcatgtacctacactagtattctatcatatgcttgctaccttctgtcaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgaattttgatctcccatggttttgcctacttcattggcccattgggttctaaaaaatggactttagaacttcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctngttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaataaataaataaatatatatgtttttgttcaagactaatgattacccaggtggagtttgggagtcactaagggaacaaaatatgaaagaaccatggtgcaatcatggtatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="247871" stop="246508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="247572" g_stop="247357" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="247356" i_stop="247276" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="247275" g_stop="246808" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="695" r_length="475" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E453499" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="247572" e_stop="247357"/>
          <exon e_start="247275" e_stop="246808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGA-ACCCCTAGGCT-GGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTC--AGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCT-GTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAGAAA-AAA-ATATAAATATATATG-TTTAGTTCAAGAATAAT-ATTACCCAGTTGGAG-TTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAG</genome_strand>
        <mrna_strand>AAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAGCCCCCTAGGCTGGGAAGATGTGCCCATCCAATCTTGTGTTGGACAGGAAGTTTATTATGCTTTTATACCCTTTCTTATTTATTCGTCTTAGAGATTGGTTTAGTGATGTTGGTTAATATGTCCTTCGGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG.................................................................................GGGTCGGTTTGCATGTACCTACACTAGTATTCTATCATATGCTTGCTACCTTCTGTCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAATTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAATGGACTTTAGAACTTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTNGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAATAAATAAATAAATATATATGTTTTTGTTCAAGACTAATGATTACCCAGGTGGAGTTTGGGAGTCACTAAGGGAACAAAATATGAAAGAACCATGGTGCAATCAT-GGTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424918" ref_strand="+" ref_description="SGN-E424918 [STM-44-E8]">
      <seq>aaacgatctcatgaacaaggaattttattcctaagtagagccccctaggctgggaagatgtgcccatccaatcttgtgttggacaggaagtttattatgcttttataccctttcttatttattcgtcttagagattggtttagtgatgttggttaatatgtccttcggtagttaaaggtattttggtgaagagggtcaaatgcttctttagttactctaggggtcggtttgcatgtacctacactagtattctatcatatgcttgctaccttctgtcaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgaattttgatctcccatggttttgcctacttcattggcccattgggttctaaaaaatggactttagaacttcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctgttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaataaataaataaatatatatgttttgttcaagactaatgattacccacgtggagttgggagtcactaagggaacaaaatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="247871" stop="246538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="247572" g_stop="247357" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="247356" i_stop="247276" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="247275" g_stop="246838" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="663" r_length="443" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E424918" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="247572" e_stop="247357"/>
          <exon e_start="247275" e_stop="246838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGA-ACCCCTAGGCT-GGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTC--AGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAGAAA-AAA-ATATAAATATATATGTTTAGTTCAAGAATAAT-ATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAA</genome_strand>
        <mrna_strand>AAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAGCCCCCTAGGCTGGGAAGATGTGCCCATCCAATCTTGTGTTGGACAGGAAGTTTATTATGCTTTTATACCCTTTCTTATTTATTCGTCTTAGAGATTGGTTTAGTGATGTTGGTTAATATGTCCTTCGGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG.................................................................................GGGTCGGTTTGCATGTACCTACACTAGTATTCTATCATATGCTTGCTACCTTCTGTCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAATTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAATGGACTTTAGAACTTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAATAAATAAATAAATATATATGTTTTGTTCAAGACTAATGATTACCCACGTGGAGTTGGGAGTCACTAAGGGAACAAAATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478984" ref_strand="+" ref_description="SGN-E478984 [cSTD-8-C5]">
      <seq>aatatacctgggtaatattgacaagaaatggaagactgaagatgtgattgatctactgaagaaggctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattntgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctaaacccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaagggaacctcgtgaggagaaggaaatacnggaccagtccatcttgaagaggcatgaacccagcaaaaaggtaaattacatgagaagatatgatgaggatcatagagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="251499" stop="247667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="251199" g_stop="251157" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="251080" g_stop="250844" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="250591" g_stop="250370" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="502" r_length="222" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="250283" g_stop="250172" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="614" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="250171" i_stop="248042" i_length="2130">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="248041" g_stop="247967" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="689" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E478984" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="251199" e_stop="251157"/>
          <exon e_start="251080" e_stop="250844"/>
          <exon e_start="250591" e_stop="250370"/>
          <exon e_start="250283" e_stop="250172"/>
          <exon e_start="248041" e_stop="247967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAG</genome_strand>
        <mrna_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTNTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAAGGGAACCTCGTGAGGAGAAGGAAATACNGGACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAAAAAGGTAAATTACATGAGAAGATATGATGAGGATCATAGAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428158" ref_strand="+" ref_description="SGN-E428158 [STM-49-F22]">
      <seq>aatatacctgggtaatattgacaagaaatggaagactgaagatgttattgatctactgaagaaggctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctannaccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="251499" stop="249902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="251199" g_stop="251157" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="251080" g_stop="250844" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="250591" g_stop="250370" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="502" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="250283" g_stop="250202" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="584" r_length="82" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E428158" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="251199" e_stop="251157"/>
          <exon e_start="251080" e_stop="250844"/>
          <exon e_start="250591" e_stop="250370"/>
          <exon e_start="250283" e_stop="250202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAAC</genome_strand>
        <mrna_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTTATTGATCTACTGAAGAAGGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTANNACCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405013" ref_strand="+" ref_description="SGN-E405013 [PPC-16-M7]">
      <seq>taacactgaagatgtgattgatctactgaagaaagctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaagtatctcttgctaaacccatgccgaagagtaagcaaactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="251388" stop="249929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="251169" g_stop="251157" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="251080" g_stop="250844" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="250" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="250591" g_stop="250370" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="472" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="250283" g_stop="250229" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="527" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E405013" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="251169" e_stop="251157"/>
          <exon e_start="251080" e_stop="250844"/>
          <exon e_start="250591" e_stop="250370"/>
          <exon e_start="250283" e_stop="250229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAAC</genome_strand>
        <mrna_strand>TAACACTGAAGAT............................................................................GTGATTGATCTACTGAAGAAAGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAAGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332552" ref_strand="+" ref_description="SGN-E332552 [cTOD-18-K21]">
      <seq>tcagctgaaaatgaggagtcaaagaaacatagtttacatccgatggaagttgagaaggctgagtgtgttagtgagtttggtgcaactgaaaacacattagaggcttgcatgttggaatgcaaagatagtgttgttgagaatgataatatggattcccttgaaacacaaattgtagttcttgattcagaaaaaaatagtcttaatgtttctactagtgataatgtggattcgagtaaggatcaaaatttggttcagttgggagaggaagggtacagtcaaggcagagaggaaacaaaggaagctgtggatactagtctgaggttgaatgaaggaattctattgagtggggaaatggaggcattagaacggaaaaagaggcggaggacagagatattcattgggggattaggcaaggagtcaaaggaagaggatattaggagtatctttggtgaggttggtgaggttgtggatgtaagattgttgataaatcatgaaacaggaaagaacaaggggtttgctttcctccggtatgcttctgctgctgatgcaaagaaggctgtagaaagatattccaaagttgagatatctgggaagcaatgtcgtgtatcccttgctgagggtaatgacacaatatacctgggtaatattgacaagaaatggaagactgaagatgtgattgatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="252738" stop="250853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="252438" g_stop="251857" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="251856" i_stop="251247" i_length="610">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="251246" g_stop="251157" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="672" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="251080" g_stop="251067" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="686" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E332552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="252438" e_stop="251857"/>
          <exon e_start="251246" e_stop="251157"/>
          <exon e_start="251080" e_stop="251067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAGGTAATGTCATTTGGAATTGCTACCTGTAGTCTCCTAAGTAGAACAAAGGTTTGTTTAAGTAGTGCAGTTAGTTGGTCGGTTGTTTGTCTACACGTACAGCTAATAAAATAAGTATGTGGCAAGATTCATATTGATTTTTTGACAGACTTATCAATTTTCTGGATCCTAAAGAATATTTTAAGTTTTAATTGATCTCTGTGCATCAAAAATTTGGTGGAAGCTTATGTAACAAATTTGCATACTCTAATATAGGTTAGAAATAGGTCTATGATATTGGGAAGTAGGTTCTTTGAACTCATTTTTGGATACCTAGCTTGAAATGGATATGGCTACAAATACTCTTTTTTTTCTTTGTTGATAAGTGGTATGGACATTTCTTACTAGTTGCTGTATCCGTACAAGTAATAAACACTACGCTATGAGGAATAATCATGCTGTTGGTGGTGTATTCATCTTTTGATTTTCATATTACACCCAAAATTTAAGGCATGGAGAATAATATATTTTAGCTAAGTTTACTGGTGTAGTCATGCTGGATAGATAATTGCAGTTTCTGCAGTAAGCTGATGTATGCGGTGGACTAATGCATTTATTTGATTTTGAAACCTAGATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACT</genome_strand>
        <mrna_strand>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTGATTGATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425038" ref_strand="+" ref_description="SGN-E425038 [STM-44-B1]">
      <seq>cgggccccccctcgagtttttactcttttttttcacttttcctggcaacatttttgggcactttcttcttcactatcttcttgacaatctttactgaacgaagattacttttttctgaatcaagaactatgtttcctgtctcaagggaacctatattgtccttggcatctttactttctgaaatgggaagctctaatttaccttcatttacactaacctcagagtccctcattctatcctttcctaagataccctcagcagcaatagtacatttcccaacttctactggatgaaatgtgcccttctcaaagtcaccacactcaccaacagtagcagcactactaggctctaaatatacagtttctagttcaattgtgccttgagagttagctttttcaacatctaatgaatccaaaacagtttctgtgttagcattttctctgcctttttctgattcctcagtctttctactgttctttgcaacggatttgggcaatttcttctttacaatcttcttgacaatctttactgaacggagattacctttttctgaatcaacaactacatttcctgtctcaagggaacctagattgtcctttgcatcattacattccaaaattggaagctctaacttacctttagctacagtaacctcacagtccttcattccatcctttcctaacataacctcgacagcaataataccttcctcaacttctattggctgaaaattgcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="252253" stop="253573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="252560" g_stop="253273" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="740" r_length="714" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E425038" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="252560" e_stop="253273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCCTTTTCCTGGCAACAAGTTTGGGCACTTTCTTCTTCACAATCTTCTTGACAATCTTTACCGGACGAAGATTACCTTTTTCTGAATCAAGAACTGTGTTTCCTGTCTGGAGTGAACCTATATTGTCCTTGGCACCTTTATTTTCTGAAATGGGAAGCTGTAATTTACCTTCGTTTACACTAACCTCAGAGTCCATCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACCTTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACCCTCACTAACTGCAGCAGCATTACAAGGCTCTACATATACAGTTTCTAGTTCAATTGTGCCTCGAGAGTTAGCTTTTTTAACATCTAATGAATCCAAAACAGTTTCTGCGTCAGCAATTTCCCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCACTTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAGGGGAACCTAGATTGTCCTTTGCATCATTACATCCCAAAATTGGAAGCTCCAACTTATCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAGCATAACCTCAACAGCAATAATACCTTCCTCAACTTCTTTTGGCTGAAAATTGTCCTTC</genome_strand>
        <mrna_strand>TTTTTTTCACTTTTCCTGGCAACATTTTTGGGCACTTTCTTCTTCACTATCTTCTTGACAATCTTTACTGAACGAAGATTACTTTTTTCTGAATCAAGAACTATGTTTCCTGTCTCAAGGGAACCTATATTGTCCTTGGCATCTTTACTTTCTGAAATGGGAAGCTCTAATTTACCTTCATTTACACTAACCTCAGAGTCCCTCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACATTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACACTCACCAACAGTAGCAGCACTACTAGGCTCTAAATATACAGTTTCTAGTTCAATTGTGCCTTGAGAGTTAGCTTTTTCAACATCTAATGAATCCAAAACAGTTTCTGTGTTAGCATTTTCTCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCAATTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAAGGGAACCTAGATTGTCCTTTGCATCATTACATTCCAAAATTGGAAGCTCTAACTTACCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAACATAACCTCGACAGCAATAATACCTTCCTCAACTTCTATTGGCTGAAAATTGCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453753" ref_strand="+" ref_description="SGN-E453753 [cSTS-21-C7]">
      <seq>ccactctacaatttctaaaatcagtgagcatccggagcaatccctgagctcccaagttccagaaataaacacctggggaaaccggagttgagttgaatgaagctgaccaagtcacgcccgcccaaaaaagtggaaattgaagctgttggggaagcagaaagtagggcagaagtggtaagaaaaaaagtggtgaaaaagaccagtaaagattgtcaagaagattgtcaagaaggaaagtgcccaaatctgttgcaaagaacagtgaaatgacagacgaatcagaaaaaggctacgcagaaactgttttggattcattcgaggttgaaaaaactagctctcgaggcacaattgaaccagaaactgtatatttagagtctagtagtgctgctacagttggtgagggtggtaactcggagaagggcaattttcagccaatagaagttgaggaaggtattattgctgtcgaggttatgttaggaaaggatggaatgaaggactgtgaggttactgtagctaaaggtaagttagagcttccaattttggaatgtaatgatgcaaaggacaatctangttcccttgagaccaggaaatgtagttgttgattcagaaaaaggtaatctccgttcagtaaagattgtcaagaagattgtaaagaagaaattgcccaaatccgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="253982" stop="252711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="253681" g_stop="253011" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E453753" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="253681" e_stop="253011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACA-CTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACG-CCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGG-AGCAGAAAGTAGGGCAG-AGTGGTAAG-AAAAAAGTGGTGAAAAAGA-CGGTAAAGATTGTTAAGAAGATTATCAAG-AGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGA-CAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAAGTGCCCAAATCCGTTGCAA</genome_strand>
        <mrna_strand>CCACTCTACAATTTCTAAAATCAGTGAGCATCCGGAGCAATCCCTGAGCTCCCAAGTTCCAGAAATAAACACCTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGTCACGCCCGCCCAAAAAAGTGGAAATTGAAGCTGTTGGGGAAGCAGAAAGTAGGGCAGAAGTGGTAAGAAAAAAAGTGGTGAAAAAGACCAGTAAAGATTGTCAAGAAGATTGTCAAGAAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGTGAAATGACAGACGAATCAGAAAAAGGCTACGCAGAAACTGTTTTGGATTCATTCGAGGTTGAAAAAACTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATATTTAGAGTCTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGGCAATTTTCAGCCAATAGAAGTTGAGGAAGGTATTATTGCTGTCGAGGTTATGTTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGGTAAGTTAGAGCTTCCAATTTTGGAATGTAATGATGCAAAGGACAATCTANGTTCCCTTGAGACCAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAATTGCCCAAATCCGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425037" ref_strand="+" ref_description="SGN-E425037 [STM-44-B1]">
      <seq>ctactctacaatttctaaaatcagtgagcatccggagcaatccctgagctcccaagttccagaaataaacactggggaaaccggagttgagttgaatgaagctgaccaagtcacgccgccaaaaacagtggaaattgaagctgttggggagcagaaagtagggcagagtggtaagaaaaaagtggtgaaaaagacagtaaagattgtcaagaagattgtcaagaggaaagtgcccaaatctgttgcaaagaacagtgaaatgacagacgaatcagaaaaaggctacgcagaaactgttttggattcattcgaggttgaaaaaactagctctcgaggcacaattgaaccagaaactgtatatttagagtctagtagtgctgnctacagttggtgagggtggtaactcggagaagggcaattttcagccaatagaagttgaggaaggtattattgctgtcgaggttatgttaggaaaggatggaatgaaggactgtgaggttactgtagctaaaggtaagttagagcttccaattttggaatgtaatgatgcaaaggacaatctaggttcccttgagacagaaatgtagttgttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="253981" stop="252785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="253681" g_stop="253085" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E425037" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="253681" e_stop="253085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACGCCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACGGTAAAGATTGTTAAGAAGATTATCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTG-CTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGACAGGAAATGTAGTTGTTGATTC</genome_strand>
        <mrna_strand>CTACTCTACAATTTCTAAAATCAGTGAGCATCCGGAGCAATCCCTGAGCTCCCAAGTTCCAGAAATAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGTCACGCCGCCAAAAACAGTGGAAATTGAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACAGTAAAGATTGTCAAGAAGATTGTCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGTGAAATGACAGACGAATCAGAAAAAGGCTACGCAGAAACTGTTTTGGATTCATTCGAGGTTGAAAAAACTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATATTTAGAGTCTAGTAGTGCTGNCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGGCAATTTTCAGCCAATAGAAGTTGAGGAAGGTATTATTGCTGTCGAGGTTATGTTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGGTAAGTTAGAGCTTCCAATTTTGGAATGTAATGATGCAAAGGACAATCTAGGTTCCCTTGAGACA-GAAATGTAGTTGTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326352" ref_strand="+" ref_description="SGN-E326352 [cTOC-14-L16]">
      <seq>tcagctgtcacatttatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcaactatcagacaagatgcaatgaataaagccaaggcatttgatgagaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258407" stop="261492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258707" g_stop="258796" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="197" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="273" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="345" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="408" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261192" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="554" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E326352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258707" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACA</genome_strand>
        <mrna_strand>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAACTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202939" ref_strand="+" ref_description="SGN-E202939 [cLEB-1-N10]">
      <seq>gcacgagatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258422" stop="261486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258714" g_stop="258796" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="189" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="265" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="400" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261186" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="540" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E202939" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258714" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGA</genome_strand>
        <mrna_strand>GCAC-GAGATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281348" ref_strand="-" ref_description="SGN-E281348 [cLEL-1-H4](-)">
      <seq>gcacgagatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaatcatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258422" stop="259440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258714" g_stop="258796" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="189" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="265" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E281348" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281348" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="258714" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG</genome_strand>
        <mrna_strand>GCAC-GAGATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATCATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276159" ref_strand="+" ref_description="SGN-E276159 [cLEN-21-G1]">
      <seq>tttatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258419" stop="261534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258719" g_stop="258796" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="185" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="261" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="333" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261234" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="584" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E276159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258719" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGA</genome_strand>
        <mrna_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334658" ref_strand="+" ref_description="SGN-E334658 [cTOD-23-F21]">
      <seq>tttatatcttctcctcttccactcacgctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcatattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258419" stop="261388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258719" g_stop="258796" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="185" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="261" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="333" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="438" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E334658" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258719" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAA</genome_strand>
        <mrna_strand>TTTATATCTTCTCCTCTTCCACTCACGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCATATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339802" ref_strand="+" ref_description="SGN-E339802 [cTOE-16-N2]">
      <seq>cctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcggtctactcattgcttccaggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258431" stop="261494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258731" g_stop="258796" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="173" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="249" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="321" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260198" i_length="106">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260199" g_stop="260279" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="402" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261194" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="550" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E339802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258731" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260199" e_stop="260279"/>
          <exon e_start="261047" e_stop="261194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATC</genome_strand>
        <mrna_strand>CCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG..........................................................................................................TCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697895" ref_strand="+" ref_description="SGN-E697895 [FA04CE05]">
      <seq>cccgttcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgaccccggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258445" stop="262993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258742" g_stop="258796" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="162" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="238" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="310" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="373" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261399" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="726" r_length="353" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="262642" g_stop="262693" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="778" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E697895" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258742" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261399"/>
          <exon e_start="262642" e_stop="262693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCT</genome_strand>
        <mrna_strand>CCCGTTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACCCCGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202829" ref_strand="+" ref_description="SGN-E202829 [cLEB-1-E8]">
      <seq>gcacgagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258448" stop="261582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258745" g_stop="258796" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="158" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="234" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="306" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="369" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261282" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="605" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E202829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258745" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGT</genome_strand>
        <mrna_strand>GCAC-GAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281521" ref_strand="-" ref_description="SGN-E281521 [cLEL-1-F9](-)">
      <seq>gcacgagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258448" stop="259414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258745" g_stop="258796" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="158" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259114" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="211" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E281521" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281521" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="258745" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGC</genome_strand>
        <mrna_strand>GCAC-GAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456322" ref_strand="+" ref_description="SGN-E456322 [cSTS-29-M21]">
      <seq>cgaggagattttaaactcaataatgccaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcangtatgttaatgctggagctgcctggctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258563" stop="262972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258768" g_stop="258796" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.724"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="136" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="212" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="284" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="347" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261399" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="700" r_length="353" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="262642" g_stop="262672" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="731" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E456322" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258768" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261399"/>
          <exon e_start="262642" e_stop="262672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACGGATTTCAAACTCAATAATG-CAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAAT</genome_strand>
        <mrna_strand>CGA-GGAGATTTTAAACTCAATAATGCCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAN..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554406" ref_strand="+" ref_description="SGN-E554406 [cTSC-4-D16]">
      <seq>acggatttcaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttggctggtacaaaaacgagagaaaaatggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258472" stop="263039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258772" g_stop="258796" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="342" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261399" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="695" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="262642" g_stop="262739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="794" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E554406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258772" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261399"/>
          <exon e_start="262642" e_stop="262739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTT-GCTGGTACAAAAACGAGAGAAAAATGGAATT</genome_strand>
        <mrna_strand>ACGGATTTC-AACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGGCTGGTACAAAAACGAGAGAAAAATGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554093" ref_strand="+" ref_description="SGN-E554093 [cTSC-3-D16]">
      <seq>acggatttcaactcaataatgcaggaggtaagaacagtacgagtggggaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagcaaagcccaagatgttgtctcaaatgcgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagcccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcataggcttcaagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258472" stop="261624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258772" g_stop="258796" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="342" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261324" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="621" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E554093" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258772" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAG-CCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTC</genome_strand>
        <mrna_strand>ACGGATTTC-AACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGGAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGCAAAGCCCAAGATGTTGTCTCAAATGCGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCATAGGCTTCAAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423821" ref_strand="+" ref_description="SGN-E423821 [STM-42-J21]">
      <seq>atagattttagactcaataatgcatgaggtaagaacagtacgagtaggtaatgtatcacatctggcagctgacagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtacatattacacaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtatagcccgagatgttgtctcaaatgtgttggcgaaaggttcagctatcagactagatgcaatgaataaagccaaggcatttgatgagacacgtcagctaatagccactgcatctgcccgagtcatgttctttgaccgaagagttgggctaacagaccagcttacgggtggaatttctgttgtgaatgacaaagttaaatctgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258567" stop="261608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258772" g_stop="258796" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="132" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="208" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="280" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.88"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="343" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261308" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="605" r_length="262" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E423821" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258772" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATC</genome_strand>
        <mrna_strand>ATAGATTTTAGACTCAATAATGCAT...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCACATCTGGCAGCTGACAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTACATATTACACAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTATAGCCCGAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACTAGATGCAATGAATAAAGCCAAGGCATTTGATGAGACACGTCAGCTAATAGCCACTGCATCTGCCCGAGTCATGTTCTTTGACCGAAGAGTTGGGCTAACAGACCAGCTTACGGGTGGAATTTCTGTTGTGAATGACAAAGTTAAATCTGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485222" ref_strand="+" ref_description="SGN-E485222 [cSTE-17-E9]">
      <seq>tagattttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggtaatatagtaatccctctatctcattttatgtgtcacttttcggatttcgagattcaaacaagtctatctttgaccgtaagttttcatagatcttttaaacattttgaattatcaattattgtgacttatagtactttttatgtagtttacaaatatagaaatttcattttaaaaaaaatgaagatttcatgcgcaaattttcggtcaaacttaaactgctggactctcgaaaaacgaaaagtgtcacataaattgggacggacgganggagtaaataaagttggtggataattcttccttcaagttattaaaaagttgggcatcttttntttttttttaatttattttttatgacaaggggcacttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258475" stop="260921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258773" g_stop="258796" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260619" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="683" r_length="404" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E485222" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258773" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAA-TTCA-TTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGAC--A--AAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</genome_strand>
        <mrna_strand>TAGATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCT--CTATCT--CATTTTATGTGTCACTTTTCGGATTTCGAGATTCAAACAAGTCTATCTTTGACCGT-AAGTTTTCATAGATCTTTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTTTATGTAGTTTACAAATATAGAAATTTCATTTTAAAAAAAATGAAGATTTCATGCGCAAATTTTCGGTCAAACTTAAACTGCTGGACTCTCGAAAAACGAAAAGTGTCACATAAATTGGGACGGACGGANGGAGTAAATAAAGTTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTNTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427116" ref_strand="+" ref_description="SGN-E427116 [STM-47-F24]">
      <seq>tagattttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggtaatatagtaatccctctatctcattttatgtgtcacttttcggatttcgagattcaaacaagtctatctttgaccgtaagttttcatagatcttttaaacattttgaattatcaattattgtgacttatagtactttttatgtagtttacaaatatagaaatttcattttaaaaaaaatgaagatttcatgcgcaaattttcggtcaaacttaaactgctggactctcgaaaaacgaaaagtgtcacataaattgggacggacggagggagtaaataaagttggtggataattcttccttcaagttattaaaaagtgggcatcttttttttttttttaatttattttttatgacaagggcaacttgcagccgctaccctttgggtgcgcacagggtaaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258475" stop="260973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258773" g_stop="258796" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260619" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="682" r_length="403" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E427116" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258773" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAA-TTCA-TTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGAC--A--AAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</genome_strand>
        <mrna_strand>TAGATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCT--CTATCT--CATTTTATGTGTCACTTTTCGGATTTCGAGATTCAAACAAGTCTATCTTTGACCGT-AAGTTTTCATAGATCTTTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTTTATGTAGTTTACAAATATAGAAATTTCATTTTAAAAAAAATGAAGATTTCATGCGCAAATTTTCGGTCAAACTTAAACTGCTGGACTCTCGAAAAACGAAAAGTGTCACATAAATTGGGACGGACGGAGGGAGTAAATAAAGTTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAG-TGGGCATCTTTTTTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419767" ref_strand="+" ref_description="SGN-E419767 [STM-30-M17]">
      <seq>attttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaatgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258476" stop="262973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258776" g_stop="258796" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="128" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="204" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261399" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="692" r_length="353" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="262642" g_stop="262673" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="724" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E419767" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258776" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261399"/>
          <exon e_start="262642" e_stop="262673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATG</genome_strand>
        <mrna_strand>ATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAATGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487448" ref_strand="+" ref_description="SGN-E487448 [cSTE-25-H13]">
      <seq>attttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgagagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaatgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggatgggatttctgttgtaaatgagagagttaaatctgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258476" stop="261608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258776" g_stop="258796" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="128" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="204" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261308" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="601" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E487448" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258776" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATC</genome_strand>
        <mrna_strand>ATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAGAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAATGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGATGGGATTTCTGTTGTAAATGAGAGAGTTAAATCTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560625" ref_strand="+" ref_description="SGN-E560625 [20308]">
      <seq>atttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258476" stop="261542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258776" g_stop="258796" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="127" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="203" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="275" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="338" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="261047" g_stop="261242" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="534" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E560625" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258776" e_stop="258796"/>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAG</genome_strand>
        <mrna_strand>ATTT-AAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718628" ref_strand="+" ref_description="SGN-E718628 [FC05AH12]">
      <seq>tggcggccaaatcggccgaattgatgcaggaggtaaccctgaacgagtgggtaatgtatcagatctggcagctgagacagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258582" stop="263662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258872" g_stop="258978" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="135" r_length="106" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="211" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="283" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260217" g_stop="260279" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="261047" g_stop="261399" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="699" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="823" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="263344" g_stop="263362" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="842" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E718628" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258872" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260279"/>
          <exon e_start="261047" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCT</genome_strand>
        <mrna_strand>GAGGTAA-CCCTGAACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGACAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269295" ref_strand="+" ref_description="SGN-E269295 [cLEM-18-D1]">
      <seq>atgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgtttcatttaaagatcctaaagcgcttgaaattgctttgctgttggcgggagcaaccatagtggatcagattgttacgataaagcaggcagaagactatgttccatcatctgagactccggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="258597" stop="260564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="258897" g_stop="258978" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="259062" g_stop="259137" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="158" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="260021" g_stop="260092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="260217" g_stop="260264" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="278" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E269295" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="258897" e_stop="258978"/>
          <exon e_start="259062" e_stop="259137"/>
          <exon e_start="260021" e_stop="260092"/>
          <exon e_start="260217" e_stop="260264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCT</genome_strand>
        <mrna_strand>ATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTTCATTTAAAGATCCTAAAGCGCTTGAAATTGCTTTGCTGTTGGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTTACGATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCCG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427117" ref_strand="-" ref_description="SGN-E427117 [STM-47-F24]">
      <seq>aaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttttgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgcttttagtaaagtagccaaggcagggcaagttgctggtacaaaaacgagagagaaatggaattttgcattgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagccgaatgtatgttggagttgctaagttgcctctgtcaaatagcttgggattccaataactatttccttgcacatctagaaattgggatccggtatgcagattgcagatcgtctgtgtcaaattcaagcaagttttatctgtgatgtgattcttttcactgttaatttttcttcccattttattgtggaatgtggagtggtgtggtgaatacaactatacgaggttgtgtaattcttttgtttgtaagccttcaaagtcacgataggttaggagcttgtattgatatcatatctttcttggtgaggatgaattttattagaaagatttctgatttgatgtttatattacgatgacatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="260834" stop="264041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="261134" g_stop="261399" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="390" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="263344" g_stop="263742" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="778" r_length="388" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E427117" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="261134" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATA-GTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAG</genome_strand>
        <mrna_strand>AAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTTTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTTAGTAAAGTAGCCAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAGAAATGGAATTTTGCATTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGCCGAATGTATGTTGGAGTTGCTAAGTTGCCTCTGTCAAATAGCTTGGGATTCCAATAACTATTTCCTTGCACATCTAGAAATTGGGATCCGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTTATCTGTGATGTGATTCTTTTCACTGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGA-----GTGGTGTGGTG-----AATACAACTATACGAGGTTGTGTAATTCTTTTGTTTGTAAGCCTTCAAAGTCACGATAGGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGATGAATTTTATTAGAAAGATTTCTGA-T-TTGATGTTTATATTACGATGACATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252166" ref_strand="+" ref_description="SGN-E252166 [cLEG-8-F3]">
      <seq>aaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcattagacgaaatttggtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcaaattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctaatagttaacccctcttgccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="260888" stop="263901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="261188" g_stop="261399" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="336" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="263344" g_stop="263601" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="599" r_length="263" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E252166" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="261188" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCA-TAGACG-AA--T-GTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACG</genome_strand>
        <mrna_strand>AAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATTAGACGAAATTTGGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAAATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTAATAGTTAACCCCTCTTGCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369391" ref_strand="+" ref_description="SGN-E369391 [TUS-23-C21]">
      <seq>aagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagagattttcagactcttgatgtttatattacgatgacctccagcatatattccactcttagattagtttattcattattaatatttcatgttgttggccaatttacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="260938" stop="264118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="261238" g_stop="261399" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="286" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="263344" g_stop="263810" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="754" r_length="468" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="755" polyA_stop="791"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E369391" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="261238" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGA-TTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCA-TATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</genome_strand>
        <mrna_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTTCAGACTCTTGATGTTTATATTACGATGACCTCCAGCATATATTCCACTCTTAGATTAGTTTATTCATTATTAAT-ATTTCATGTTGTTGGCCAATTTACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242558" ref_strand="+" ref_description="SGN-E242558 [cLED-30-J3]">
      <seq>aagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="260938" stop="263883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="261238" g_stop="261399" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="286" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="263344" g_stop="263583" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="526" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E242558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="261238" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGT</genome_strand>
        <mrna_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378521" ref_strand="+" ref_description="SGN-E378521 [TUS-23-C21]">
      <seq>gctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagagatttcagactcttgatgtttatattacgatgacatccagcatatattccactcttagataagtttattcatattaatcatttcatgttgttggtcaatttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="260947" stop="264108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="261247" g_stop="261399" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="262642" g_stop="262765" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="277" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="263344" g_stop="263808" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="742" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E378521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="261247" e_stop="261399"/>
          <exon e_start="262642" e_stop="262765"/>
          <exon e_start="263344" e_stop="263808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</genome_strand>
        <mrna_strand>GCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224699" ref_strand="+" ref_description="SGN-E224699 [cLEL-27-L2](-)">
      <seq>gatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="263044" stop="264004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="263344" g_stop="263703" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="378"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E224699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="263344" e_stop="263703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAG</genome_strand>
        <mrna_strand>GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224623" ref_strand="+" ref_description="SGN-E224623 [cLEL-27-L2](-)">
      <seq>agatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcccgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="263063" stop="264004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="263363" g_stop="263703" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="359"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E224623" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="263363" e_stop="263703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAG</genome_strand>
        <mrna_strand>AGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCCCGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547831" ref_strand="+" ref_description="SGN-E547831 [TUS-71-O16]">
      <seq>gtttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="268092" stop="268931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="268392" g_stop="268631" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E547831" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="268392" e_stop="268631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>GTTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549600" ref_strand="+" ref_description="SGN-E549600 [TUS-71-O16](-)">
      <seq>gtttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="268092" stop="268931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="268392" g_stop="268631" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E549600" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="268392" e_stop="268631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>GTTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364331" ref_strand="+" ref_description="SGN-E364331 [cLPP-20-J2]">
      <seq>tttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="268093" stop="268931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="268393" g_stop="268631" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E364331" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="268393" e_stop="268631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>TTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375001" ref_strand="-" ref_description="SGN-E375001 [TUS-36-G7](-)">
      <seq>tttttttttttttttttttttttttttggagaaaatgtaactgttttatcaaaaaacttatacaaacacgtcaaattcagggctgcaaggggtaaagatgataaccatatgaaggagttatacatgcttttgttcactgtatactttcttttgaatttttacttctctgaatctccatccactaaattaatttgaggatgactaaaaaataggctaaaaattgtacgtggtttttgcactgggacaagaatcatcacaacagatatctaacaactacagcaaaaagtgtaatttacagaccgagccttttgggtcgtaaataagtagttgagcctttcttcaacccaggcataaaaacctgttgcagttcttttgctctcttttccttctccttctccttgtttcgtctgtcagcttcagcctgtactttacgcaacttctccatttcttcctccatggcagttttctcctctttctgtttctttttatgttccagcattgatgtatcaaaatctttcacggagaaaaacatgggccccagttcagccaaccagtgaggctccacagctgtcacacactgcatgtactcctttgatgtcaaaataagctcatgataaaccacgttatcaggagtgtaacccaatccatagagagccctagtgggatgaagggggcaaggcattccattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="20790" stop="270162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="268998" g_stop="269025" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="269026" i_stop="269200" i_length="175">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="269201" g_stop="269862" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="690" r_length="662" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E375001" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="268998" e_stop="269025"/>
          <exon e_start="269201" e_stop="269862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTTTTCATATAATTTTTAAAAGGTATGAACAACAAATTTCCAAAAACATACACGATTCTATCTGCAACTGGTGCAAAGCATGTTGATAAACAAAGAAATTGATTGAAGATTCTCCTTTATATATCACTCCAGATAAGAAGATAATGTAATACAACAATAGTAGCAAATGTGCAATCTGAATGCTGCCAAAAGCAAAGGAGAAAATGTAACTGTTTTATCAAGAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAGAGATAGGCTAAGAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTCTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAGAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAGAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAGATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCACTAGTGGGATGAAGGTGGCAAGGCATTCCATTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTG...............................................................................................................................................................................GAGAAAATGTAACTGTTTTATCAAAAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAAAAATAGGCTAAAAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTTTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAAAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAAAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAAATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCCCTAGTGGGATGAAGGGGGCAAGGCATTCCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376803" ref_strand="+" ref_description="SGN-E376803 [TUS-19-D9]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacccaagaggctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttagcctatctcttagtcatcctcaaattaatttagtggatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270284" stop="269045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269984" g_stop="269345" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E376803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269984" e_stop="269345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615857" ref_strand="+" ref_description="SGN-E615857 [65660]">
      <seq>catggaggaagaaatggagaagttgcgtacagtacaggctgaagctgagagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctggtttgaagaaaggctcgactacttatttacgacctaagaggctcggtctgtaaattacattttttgctgtagttgctagatatctggtgtgatgactcttgtcccagtgcaaaaaccacgtacaattctcagcccatctcttagtcatcctcaaattaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="269930" stop="269055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269630" g_stop="269355" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="277" polyA_stop="286"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E615857" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269630" e_stop="269355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTA</genome_strand>
        <mrna_strand>CATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTGAGAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGTTTGAAGAAAGGCTCGACTACTTATTTACGACCTAAGAGGCTCGGTCTGTAAATTACATTTTTTGCTGTAGTTGCTAGATATCTGGTGTGATGACTCTTGTCCCAGTGCAAAAACCACGTACAATTCTCAGCCCATCTCTTAGTCATCCTCAAATTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375002" ref_strand="+" ref_description="SGN-E375002 [TUS-36-G7]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacccaagaggctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttagcctatctcttagtcatcctcaaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270284" stop="269058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269984" g_stop="269358" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E375002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269984" e_stop="269358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAAT</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711462" ref_strand="+" ref_description="SGN-E711462 [FB02AC10]">
      <seq>ccattaaaagtgatgctgctaaggaaaagttttttgtgccagcctctgatcaccttacactgcttaatgtttaccatccaatggaaagctaatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacacaaggctaaggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggacctgattgggatgttgtaaagaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcgtcccactaatgctctctatggattgggttacactcctgataacgtggtttatcatgaccttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacataaagaggagaaaactgccatggaggaagaaatggagaagttgcttaaagtacaggctgaagctgacagacgaaacaacgagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaagctcaactacttatttacgacccaagaagctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttaccctatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270465" stop="269078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="270171" g_stop="269378" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E711462" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="270171" e_stop="269378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCA-GCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTC</genome_strand>
        <mrna_strand>CCATTAAAAGTGATGCTGCTAAGGAAAAGTTTTTTGTGCCAGCCTCTGATCACCTTACACTGCTTAATGTTTACCATCCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACACAAGGCTAAGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGACCTGATTGGGATGTTGTAAAGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCGTCCCACTAATGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGACCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACATAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCTTAAAGTACAGGCTGAAGCTGACAGACGAAACAACGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAAGCTCAACTACTTATTTACGACCCAAGAAGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTACCCTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230938" ref_strand="+" ref_description="SGN-E230938 [cLED-5-A5]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacataaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagccaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270284" stop="269184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269984" g_stop="269484" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E230938" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269984" e_stop="269484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACC</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACATAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCCAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240704" ref_strand="+" ref_description="SGN-E240704 [cLED-21-J6]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270284" stop="269189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269984" g_stop="269489" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E240704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269984" e_stop="269489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTA</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231698" ref_strand="+" ref_description="SGN-E231698 [cLED-4-D13]">
      <seq>acgagagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270285" stop="269279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="269990" g_stop="269579" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E231698" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="269990" e_stop="269579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGA</genome_strand>
        <mrna_strand>ACGAGAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456614" ref_strand="+" ref_description="SGN-E456614 [cSTS-30-E5]">
      <seq>atcaatacaggggggactggtgtaatgaccactttttacaggtcaaaggtctgcgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatatgctctgcctacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtacagtacaggctgaagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270381" stop="269283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="270081" g_stop="269582" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E456614" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="270081" e_stop="269582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGAC</genome_strand>
        <mrna_strand>ATCAATACAGGGGGGACTGGTGTAATGACCACTTTTTACAGGTCAAAGGTCTGCGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATATGCTCTGCCTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442500" ref_strand="+" ref_description="SGN-E442500 [cSTA-33-D14]">
      <seq>ggtgtaatgaccactttttacaggtcaaaggtctgcgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatatgctctgcctacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtacagtacaggctgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270363" stop="269284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="270063" g_stop="269584" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E442500" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="270063" e_stop="269584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTG</genome_strand>
        <mrna_strand>GGTGTAATGACCACTTTTTACAGGTCAAAGGTCTGCGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATATGCTCTGCCTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739475" ref_strand="+" ref_description="SGN-E739475 [LC17CE02]">
      <seq>caaataataaaaaaatacataaaaaaaattaaaaaaacataaaataaataaaaaataaaatttcctggggggggggcccgggcccttttcccctgaaggtgtactttcataaaatgggtatggatgctctgcaagtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagctggtagaactggcccaggaacttgttaccggctttatactgagaatgcgtatgagaatgaaatgctgcaaagtcccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgtttaaatgaggttctgactattgtttctatgctttcagtgccttctgttttctttagacccaaggatagggctgaggaaagtgatgctgctagggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttaccagcaatggaaagctaatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcaactaggctgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270940" stop="269585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="270672" g_stop="269885" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="869" r_length="788" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E739475" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="270672" e_stop="269885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGA</genome_strand>
        <mrna_strand>GCCCTTTTCCCCTGAAGGTGTACTTTCATAAAATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAACTAGGCTGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437089" ref_strand="+" ref_description="SGN-E437089 [cSTA-2-L17]">
      <seq>aaagccccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgcttaaatgaggttctgactattgtttctatgctttcagtgccttccgttttctttagacccaaggatagggctgaggaaagtgatgccgctagggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="270804" stop="269798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="270504" g_stop="270098" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E437089" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="270504" e_stop="270098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTAC</genome_strand>
        <mrna_strand>AAAGCCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGCTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCCGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCCGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602738" ref_strand="+" ref_description="SGN-E602738 [55810]">
      <seq>gtgatgaggcatctttccagaagaaagaggtggaattggccaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacagagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaggacccaacgtcagatatggccataatttcacgtaaaggttcagctctagttcgggaaatacgtgaaaaacaaaacatgcacaagtctcgtcaaagattttgggagctggctggttcaaaactcggagatatccttggtgtggagaagagtgcagagcaggttgatgcggatactgctacagtgggcgaggatggtgaggtggattttaaaggagaagctagattctcacagcacttaaagaaaggggaagctgtcagtgattttgcattatcaaaaacactttcacagcaaaggcagtacctgcccatcttctctgtgcgagatgatttattgcaggtggttcgcgaaaaccaggtggtggttgttgttggagaaactggttctggaaagacaacacagctaactcagtaccttcatgaagatggctatacaagtaatgggattgttggttgcaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="275477" stop="271388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="275177" g_stop="275128" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="275127" i_stop="273926" i_length="1202">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="273925" g_stop="273748" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="228" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="273747" i_stop="273648" i_length="100">
            <donor d_prob="0.796" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="273647" g_stop="273418" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="458" r_length="230" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="273417" i_stop="273321" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="273320" g_stop="273144" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="635" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="273143" i_stop="271929" i_length="1215">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="271928" g_stop="271857" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="707" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="271856" i_stop="271740" i_length="117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="271739" g_stop="271688" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="758" r_length="51" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E602738" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="275177" e_stop="275128"/>
          <exon e_start="273925" e_stop="273748"/>
          <exon e_start="273647" e_stop="273418"/>
          <exon e_start="273320" e_stop="273144"/>
          <exon e_start="271928" e_stop="271857"/>
          <exon e_start="271739" e_stop="271688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTGGTAAGCACAGAGACTACAAAAGCCTTAAATCATGATTTTGGCATATGTTTGCATTTGTGTGTTTGGGGGAGAACTAGCATACTCTCGGATGTTACTGGGACTCGGTGGAAGTTGTAGCAATATGAATGACTGGTGCTTTAAGCTGATTAGAAAACTTACTTGATGGTTAGTGGTTTAGCTTGCACTTGACAACTCGTGTCACTCTCTGCATAACAATCTGTTGTGTCATAGCTTGCTGTATTTCGAGGCATTATGGATTTATGTTTCTGCTTTGCGATCCCTCTATCATCAATACTGATGATGAGAATTAGATGAATTTATATAATTCTCTGGTGCGAAGGGAACTAGAGGGCACATATCCTTAATTGCCGTTTGATGCATGAGCATGTTTCACTATTGTGATTGTGTCAGACAATGTGCTTTTCCTACTGATTGAATTCCCTTTGTGTAGACCTGCTGTCTCTTTTAGAGATGTATTTTGTATTATCCTATTTTAGAGCATTGTTGAACATCTGAGAGGTCACTAAGACGTTTGAACAGAAAAGATGGAAGACCTTGCACAGATATTATCCTTTTGACCCTAAACTGAAATTGCAGTATTTTTCTTTCTTTTACATCCAGATGTATCTCGATTTTGCACCTCTGTGGTGCCATCATCTGCATAACATAGTTGCTTTCGATTAAAGAAAAATGAATTTTACATCTGAGAGGTATTTAAATTATAACATGTTGTTTTCCAATGCAAAACTTTGAAACTTGGTTTGAAATTCAGGAAATTATAGGGAATTGCGAGATCAAAATAGTAGTCATTTATAGCCGATGAGCTGGTTCTTCTTAGAATCTGAGCTAAAATGACTATTGGGGAGAGAACACAGAGATTTACTGGCTAAGTCAAGATATCATTTTAATTTAACATCAAGAGCTTCTTGGACCTTTCCTGATGAGACAGTCTGTTCTCAGTGGGTTAGCATAATATCAAGAACTTCTGTAGTCTATCAATTGTAACTATACTATGTAGGATTGGTGATGAGATAGTCTGTTCTCTGTGGGTTGGCATAATATCAAGAACGTTTGTAGTCTATCAAACGTAACTATACTGTGTAGTTAAGGATTGGTTAGATACAATGAACACTAATACAATGCATGTATGGTCTGCCATTGACGTTGTCTTTCTCTCTCTCCCTGCCCTCCACTTGTAACAGGTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGACAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTTGAGAAGAGTGCAGAGCAGGTACCTTATGTTTCCATGAAATTGAACATACTGTGTTAATCTGGTGTGTTTCAGGTTGTAGACGATATAACCGGGATTCCCTTTCACCTTATGCTAGGTTGATGCGGATACTGCTACAGTGGGCGAGGATGGAGAGGTTGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTATCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAGGTTTGACCCATTTTCTCATTCTGATACTCTGGGGAGTTTATTGAATGATGAGTTACTGTACCTGCTGATTGGCTTTTCATGTCTGTGAAGACATGTAGGTGCCACATACAGCGAAGTATGTAAACCTAATAAAAATGAGTTACTGAACCTGTTATCCACCTTAACACATATCTAGAAACTTTTACTTTGAACTTCATTGGAATTAGTTAAATGGTAAAATTGACCTGATGTGCCGTAATTAGGACTTGGAGCTCTGCATACAAATTAGATGCTAAGCTGCTTTCTTAAAGTCTATTGGTGTCCTTTTCCTTGGGATAAATTCACCAAATATTTACTTGTGAAAAACAACGTTTACTCTTAATGGTTTTTTTATAACCATGGTGTCCAGGCCATCTAATTCCATGGGGTGCTTGCTACCTCCTACCAACACAAGTACCGAGTAATCTATCACTAAAGAAGATATCACCTAGTGTTTTGTCTCCGTTGGCTTTTGAACCTGAGATCTCATGGTTCTCAACCCACTTCGTTGATCCCCAGGTCATATCTAGGGATGGAAAAATGGGTAATATATATGGGTACCCATTCAAAGTACCCATCTTAAATAAGTTGGGTACCCAACTCATTTAAAATGGGAAAAAAGCGAGTCAAACTCATATAAACCATTTAAAAGTTCGTCGGAAAATGGGTAAAAGGGACTCATTTACAAAAGAAAGAAGAGCCACATTAATATTTTTTTAAGGTGTAGTGGTCGGGATAGGGATGGGTGGGATAAGGAAAAAATCAATATTTTTTTTGAAAAACAATTTTTTTGGGAGGGGGTGCGGTAGTGGTGGGAAGGGTGGTGTGAAGTAGAAAAAAATAAATTTATTATTTTTCAGAAAAACAAATTAAAAAAAAAAGTAACTTTTGAGGCGTTGGGCTATGGGGTGGGGGTGCGGAGGGTGAAGAGTGAGGTTAGAGATTTTGCTTTTAAAGCTTTTAACATGATCCCTATAATACTATGGGTAAATATGGATACCCATATTATCCATTGGGTAACTCGTTTTTACCCATTTAAAATATGAGTCGAGTCGAATATTTACCCATTTTTATTTAACTCATTTTCGATCGACTCATATTCAACTTACCTGCTTGTTTGCCGGTGCTAGTCATACCCTTTGGCACTGCTGTGTTTCTTCATTGAATGATTTTTTTGGTTTTTTCTTTTGGGAACAGGTGGTTCGCGAAAACCAGGTGGTGGTGGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAGGTTGGCTTAGACTTGTGTTTTCTTTTTCTAAATCATCTTTTAAATCTTAACTAGAATCTGTTGAATCTTTATACGGTCCTGGGTCTTATTTGTATGTGTGTCTGTAATTTCATGCAGTACCTTCATGAAGATGGCTATACAAGTAACGGGATTGTTGGTTGCACCCAAC</genome_strand>
        <mrna_strand>GTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACAGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACGTCAGATATGGCCATAATTTCACGTAAAGGTTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGTCAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTGGAGAAGAGTGCAGAGCAG.................................................................................................GTTGATGCGGATACTGCTACAGTGGGCGAGGATGGTGAGGTGGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTACCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCGCGAAAACCAGGTGGTGGTTGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAG.....................................................................................................................TACCTTCATGAAGATGGCTATACAAGTAATGGGATTGTTGGTTGCA-CCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569746" ref_strand="+" ref_description="SGN-E569746 [14225]">
      <seq>ggaattgggcaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacagagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaggacccaacgtcagatatggccataatttcacgtaaaggttcagctctagttcgggaaatacgtgaaaaacaaaacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="274230" stop="273197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="273925" g_stop="273748" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="197" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="273747" i_stop="273648" i_length="100">
            <donor d_prob="0.796" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="273647" g_stop="273497" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="348" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E569746" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="273925" e_stop="273748"/>
          <exon e_start="273647" e_stop="273497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCA</genome_strand>
        <mrna_strand>GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACAGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACGTCAGATATGGCCATAATTTCACGTAAAGGTTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330771" ref_strand="+" ref_description="SGN-E330771 [cTOD-8-J8]">
      <seq>ctcgtgccgcttctacaggaggtgctctgtctgaggacggaggagatgatacaaatggtgcctctgaagatcagaatgaagagattactgaaagtatgcgtttagagatggagtataattcagatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgaaggggatggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggccaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaagacccaacttcagatatggccataatttcacgtaaaggctcagctctagttcgggaaatacgtgaaaaacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="275814" stop="273199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="275619" g_stop="275603" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="35" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="275602" i_stop="275489" i_length="114">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="275488" g_stop="275391" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="133" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="275390" i_stop="275237" i_length="154">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="275236" g_stop="275128" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="242" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="275127" i_stop="273926" i_length="1202">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="273925" g_stop="273748" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="420" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="273747" i_stop="273648" i_length="100">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="273647" g_stop="273499" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="569" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E330771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="275619" e_stop="275603"/>
          <exon e_start="275488" e_stop="275391"/>
          <exon e_start="275236" e_stop="275128"/>
          <exon e_start="273925" e_stop="273748"/>
          <exon e_start="273647" e_stop="273499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGCTCTGTCTGAGGTACTGCTTTATACCAAAGTTATCTTCCTTAGTTTATTTTTTGTTTGTGGGGTGGGGGCTTAATTGGAATATTAAAAGAAGGATTTTTTTCACCTGTGCGTTACTTCCTTCTAGGACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTGGTAATTGTCTTACCATTTTATAGTATCTACAGTATTATGAGTCTTATGACCCCTCTCTCAGAAGTCTATATGTGCTTACTATGTTTTCTTTTTCTCTTTCTAGTAATCAGTTTTGTTATTTTTGGTAGAGCCAATTATCACTTGCATTATGCAGGTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTGGTAAGCACAGAGACTACAAAAGCCTTAAATCATGATTTTGGCATATGTTTGCATTTGTGTGTTTGGGGGAGAACTAGCATACTCTCGGATGTTACTGGGACTCGGTGGAAGTTGTAGCAATATGAATGACTGGTGCTTTAAGCTGATTAGAAAACTTACTTGATGGTTAGTGGTTTAGCTTGCACTTGACAACTCGTGTCACTCTCTGCATAACAATCTGTTGTGTCATAGCTTGCTGTATTTCGAGGCATTATGGATTTATGTTTCTGCTTTGCGATCCCTCTATCATCAATACTGATGATGAGAATTAGATGAATTTATATAATTCTCTGGTGCGAAGGGAACTAGAGGGCACATATCCTTAATTGCCGTTTGATGCATGAGCATGTTTCACTATTGTGATTGTGTCAGACAATGTGCTTTTCCTACTGATTGAATTCCCTTTGTGTAGACCTGCTGTCTCTTTTAGAGATGTATTTTGTATTATCCTATTTTAGAGCATTGTTGAACATCTGAGAGGTCACTAAGACGTTTGAACAGAAAAGATGGAAGACCTTGCACAGATATTATCCTTTTGACCCTAAACTGAAATTGCAGTATTTTTCTTTCTTTTACATCCAGATGTATCTCGATTTTGCACCTCTGTGGTGCCATCATCTGCATAACATAGTTGCTTTCGATTAAAGAAAAATGAATTTTACATCTGAGAGGTATTTAAATTATAACATGTTGTTTTCCAATGCAAAACTTTGAAACTTGGTTTGAAATTCAGGAAATTATAGGGAATTGCGAGATCAAAATAGTAGTCATTTATAGCCGATGAGCTGGTTCTTCTTAGAATCTGAGCTAAAATGACTATTGGGGAGAGAACACAGAGATTTACTGGCTAAGTCAAGATATCATTTTAATTTAACATCAAGAGCTTCTTGGACCTTTCCTGATGAGACAGTCTGTTCTCAGTGGGTTAGCATAATATCAAGAACTTCTGTAGTCTATCAATTGTAACTATACTATGTAGGATTGGTGATGAGATAGTCTGTTCTCTGTGGGTTGGCATAATATCAAGAACGTTTGTAGTCTATCAAACGTAACTATACTGTGTAGTTAAGGATTGGTTAGATACAATGAACACTAATACAATGCATGTATGGTCTGCCATTGACGTTGTCTTTCTCTCTCTCCCTGCCCTCCACTTGTAACAGGTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</genome_strand>
        <mrna_strand>GAGGTGCTCTGTCTGAG..................................................................................................................GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG..........................................................................................................................................................GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAAGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247138" ref_strand="+" ref_description="SGN-E247138 [cLEF-46-I20]">
      <seq>ttgatcatttgagaacgttgacacattgatattggtgaatggtaattcaagaaatgggatctcgggggggaggtgaagcaaaggcaaatgctttagctacgcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaaccttgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacgggccagtgcagcaaggggcttctcagcatcatccatcgagcattacaatgtccagggatctcagcaagaagactgttgatgaggtgtggcaagatattcagcagggggtaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="282325" stop="283291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="282625" g_stop="282991" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E247138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="282625" e_stop="282991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAGTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAAT</genome_strand>
        <mrna_strand>TTGATCATTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559775" ref_strand="+" ref_description="SGN-E559775 [19326]">
      <seq>ctgaatggtaatacaagggatgggatctcaggggggagatgaagcaaaggcaaatgctttagctacgcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaacctcgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacggggcagtgcagcatggggcttctcagcatcgtccatcgagcattacaatgtccagggatctcagcaagaagactgtcgatgaggtgtggcaagatattcagcagggggtaaaaacagataatgttgataagagaagccaggagaggcaacttactttaggtgagataactctggaggatttcttggtcaaggctggagtgattgcagagtcgacccaaggcaagagaatttcgggtttagtatttggggttgattcaaatgtcattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="282360" stop="283444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="282659" g_stop="283144" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E559775" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="282659" e_stop="283144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTC-AATGTCATTGAC</genome_strand>
        <mrna_strand>CTGAATGGTAATACAAGGGATGGGATCTCAGGGGGGAGATGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTCGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGGCAGTGCAGCATGGGGCTTCTCAGCATCGTCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTCGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAACAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTTACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCAGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTATTTGGGGTTGATTCAAATGTCATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299937" ref_strand="+" ref_description="SGN-E299937 [cLEW-11-G9]">
      <seq>ctttagctattcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaaccttgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacgggccagtgcagcaaggggcttctcagcatcatccatcgagcattacaatgtccagggatctcagcaagaagactgttgatgaggtgtggcaagatattcagcagggggtaaaaatagataatgttgataagagaagccaggagaggcaactaactttaggtgagataactctggaggatttcttggtcaaggctggagtgattgccgagtcgacccaaggcaagagaatttcgggtttagtttttggggttgattcaatgtcattgacacagcaagctcagtggacgcactatcaaatccccgcaatgcaacaggtaccagaacagcagcatcaacaacaacagcagaatataccaccagtttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="282415" stop="283543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="282715" g_stop="283243" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E299937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="282715" e_stop="283243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</genome_strand>
        <mrna_strand>CTTTAGCTATTCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542259" ref_strand="+" ref_description="SGN-E542259 [TUS-63-H16](-)">
      <seq>gaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttcatggggtgccaggatagcgtaatcaactacaatggctcaacgactgattttaatgtatggaaggatctataagttcccattgttatattctcatggttgcgccaataaggcaactgaagtttaatgcgtttgcatcaggctggtaattttttcttgcagatgagggttttgaagggtgtgattagtctagctagtgtagattaggaaacagtgtacataaggcatagctgctaatcattggcctttttttgttctttcccttttgggttttatgacaaaaagatgtgagctcagacatatatctactggatacagcttgcctgtccgacaggctttatatatgaaagcagtatttaagctcttgaaatttagcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="287976" stop="285273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287676" g_stop="287532" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285574" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="777" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="792"/>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E542259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287676" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</genome_strand>
        <mrna_strand>GAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433964" ref_strand="-" ref_description="SGN-E433964 [STM-59-C6]">
      <seq>aagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtcctttttcttgcagatgagggttttaaagggtgtgaattagtttagctagtgtagattaggaaacagtgtacataaggcatagccgctattcattggccttctttcgttctttcccttttgttttttatgaaagaaagatgtgagctcaaaacaattttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="287975" stop="285342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287675" g_stop="287532" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285640" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="710" r_length="441" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E433964" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433964" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="287675" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTG-ATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGG</genome_strand>
        <mrna_strand>AAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGT-CCTTTTTCTTGCAGATGAGGGTTTTAAAGGGTGTGAATTAGTTTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCCGCTATTCATTGGCCTTCTTTCGTTCTTTCCCTTTTGTTTTTTATGAAAGAAAGATGTGAGCTCAAAACAATTTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620612" ref_strand="+" ref_description="SGN-E620612 [71315]">
      <seq>cagcagttagtgcttcagtgcatttgggtgagatcagatctggtggtctaagaggcaatcacagacaccacacatgcaatgagacatatgttatatggggagctaaaacagtattccgggtggaaaatgatgcggtaaaaaacaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgtagatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaattacaatggctcaacgattgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtccttttgcttgcagatgagggtatcaaagggtgtgaatgagtttagctagtgtagattaggaaacagtgtacataaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="287214" stop="285424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="286914" g_stop="286796" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286080" g_stop="285724" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="477" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E620612" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="286914" e_stop="286796"/>
          <exon e_start="286080" e_stop="285724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAA-AGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTG-ATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCAT</genome_strand>
        <mrna_strand>CAGCAGTTAGTGCTTCAGTGCATTTGGGTGAGATCAGATCTGGTGGTCTAAGAGGCAATCACAGACACCACACATGCAATGAGACATATGTTATATGGGGAGCTAAAACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAACAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTAGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAATTACAATGGCTCAACGATTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGT-CCTTTTGCTTGCAGATGAGGGTATCAAAGGGTGTGAATGAGTTTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542262" ref_strand="+" ref_description="SGN-E542262 [TUS-63-H16]">
      <seq>acattttcctcttccggtaaccagaaccaccaccaacttccaatctccaccgccccatttcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttcatggggtgccaggatagcgtaatcaactacaatggctcaacgactgattttaatgtatggaaggatctataagttcccattgttatattctcatgggtgcgccnaatanngcactgaaagttaatgcgtttgcatcaggctggtaattttttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288189" stop="285492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287889" g_stop="287532" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="483" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285792" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="772" r_length="289" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E542262" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287889" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCC-AATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGC</genome_strand>
        <mrna_strand>ACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGGTGCGCCNAATANNGC-ACTGAAAGTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485553" ref_strand="+" ref_description="SGN-E485553 [cSTE-18-B21]">
      <seq>gaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgcggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtaatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288196" stop="285499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287830" g_stop="287532" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="377" r_length="299" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="502" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285799" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="783" r_length="281" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E485553" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287830" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTT</genome_strand>
        <mrna_strand>TCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGCGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTA-ATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433963" ref_strand="+" ref_description="SGN-E433963 [STM-59-C6]">
      <seq>gaaaaagtgagagatggcaaatccaaggaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288223" stop="285587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287926" g_stop="287532" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="529" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285887" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="723" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E433963" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287926" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATC---A---------GGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAA</genome_strand>
        <mrna_strand>GAAAAAGT--GAGA-GATGGCAAATCCAAGGAGGACATCATTTTCCCCTTCCGGTAACCAGAACCACCAGCAACTTCCAATTTCCACCTCCCCATTTCAGAATCAGAATCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561197" ref_strand="+" ref_description="SGN-E561197 [17151]">
      <seq>atttccctttcggtaaccagaacaccagcaacttccaatttccaccgncccatttcagaatcagaatncaagaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctccctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttctcagattcctcttcttctattgccaaagataagcgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgcggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288185" stop="285625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287886" g_stop="287532" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="484" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285925" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="640" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E561197" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287886" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAG---G---GAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATC</genome_strand>
        <mrna_strand>ATTTCC-CTTTCGGTAACCAGAA-CACCAGCAACTTCCAATTTCCACCGNCCCATTTCAGAATCAGAATNCAAGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCCCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTCTCAGATTCCTCTTCTTCTATTGCCAAAGATAAGCGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGCGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269584" ref_strand="+" ref_description="SGN-E269584 [cLEM-2-O20]">
      <seq>ccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288067" stop="285648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287767" g_stop="287532" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="361" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285948" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="494" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E269584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287767" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCA</genome_strand>
        <mrna_strand>CCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404605" ref_strand="+" ref_description="SGN-E404605 [PPC-14-H23]">
      <seq>gaaaaagcgagagatcggcaaatccaaagaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaagtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaagttacgtggaagtaatattggtgcagatgaggttgctgntgcagtcagcccccttggaactgcccatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288223" stop="285683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287926" g_stop="287532" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="530" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="285983" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="627" r_length="97" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E404605" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287926" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="285983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAG------------GGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCT</genome_strand>
        <mrna_strand>GAAAAAGCGAGAGAT--CGGCAAATCCAAAGAGGACATCATTTTCCCCTTCCGGTAACCAGAACCACCAGCAACTTCCAATTTCCACCTCCCCATTTCAGAATCAGAATCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAAGTTACGTGGAAGTAAT-ATTGGTGCAGATGAGGTTGCTGNTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300294" ref_strand="+" ref_description="SGN-E300294 [cLEW-17-A6]">
      <seq>cattttcctcttccggtaaccagaaccaccaccaacttccagatctccaccgccccatttcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="288188" stop="285756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="287888" g_stop="287532" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="286920" g_stop="286796" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="483" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="286080" g_stop="286056" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="508" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E300294" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="287888" e_stop="287532"/>
          <exon e_start="286920" e_stop="286796"/>
          <exon e_start="286080" e_stop="286056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCA-ATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAG</genome_strand>
        <mrna_strand>CATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAGATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699478" ref_strand="+" ref_description="SGN-E699478 [FA10BA12]">
      <seq>cgtttcacttcacaagcataacaaaataaaacaagataaaaataactttcaagaggctgttgaaggatctccagatgaatcaaatggattaaatgtgtctcagaacattaatccttctgaacgcagagcccctagctctcaaaaaagccttctgatgaattggcccttaatgtcttctattattgtctactgtgtattccagctccacgatatagcctatttggagatattttcactctgggctgttagtccaaggacccttgggggtttaagcttcacaacttctgatgttggacaagttcttgccatcacaggcattggtttgctactctttcagctgcttgtttatccactggtggaaaggattactgggcctgtcatgatttctcggatcggtgcagttttaagcatacctttattggctagctacccatatatagctttattaactggttttggcctctccatagctctcaactgtgcatctatgttaaagaatattctctcggtatcaattacaactggcttactaatcatgcagaatagagctgtgtcccaggagcaaagaggagctgcaaatggcatttcaatgtcctcaatgtcgcttttcaagacaattggccctgcagccgggggctcattattgtcctggtcacaacggcgtctagatgctgatattctgcctggtgatcagttggtgttctttgttctcaacgccatttgagtgctcggcctacttctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="-" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="291719" stop="288710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="291423" g_stop="291199" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="226" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="291198" i_stop="291074" i_length="125">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="291073" g_stop="290986" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="314" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="290985" i_stop="290856" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="290855" g_stop="290770" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="400" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="290769" i_stop="290670" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="290669" g_stop="290562" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="290561" i_stop="290073" i_length="489">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="290072" g_stop="290028" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="290027" i_stop="289934" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="289933" g_stop="289845" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="642" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="289844" i_stop="289218" i_length="627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="289217" g_stop="289174" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="686" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="289173" i_stop="289070" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="289069" g_stop="289010" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="-" ref_id="SGN-E699478" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="291423" e_stop="291199"/>
          <exon e_start="291073" e_stop="290986"/>
          <exon e_start="290855" e_stop="290770"/>
          <exon e_start="290669" e_stop="290562"/>
          <exon e_start="290072" e_stop="290028"/>
          <exon e_start="289933" e_stop="289845"/>
          <exon e_start="289217" e_stop="289174"/>
          <exon e_start="289069" e_stop="289010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAGGTAGACATTGCTCAAATCTTTGCAGGACAATTTGCCTTGTGTTTTCTGAACCTTTTTAGGCAGACTATATTGGAAAATTGTGCATCTTTTAATCAAAAAAATACTATTAATGTTTTGCATCACTCTACAGGCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCAGTATGCCCCTGACTAAACTGACATATCACTTATATAACTACCACTTCCTATAAAGTTTCTTTTTCACTGTTAGATTATATTGAACTTACTTATCTTTCAGGTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCGGTAAGAACTTATCCTTAAATCATTGAGTTCTTCAGCTTCATGAAGTTATTGATGATAAAAATTCAATGTAGTGCTTTTGTGAATATCCAGGAATAGTTACTTATGTCCTTTTTTGTTTTGTTTTTCCCTTTTTGAATTCGAAATGTTTTTACTCCCACTGTTGGCGTGTATGCAGTATGATTCACAAAAATGATGGTGCATGATGAGGAGGAGAAAGAAATATATGACCTATAATATTTTGCTTCATTCATCTTTGCAGCTCTTTTCTCAAGTTTATGTTAGCTTTATGCTTTGTTACTCAATATCTAAGGTTCTTCGTTGAATGTAAATGAGTTGTATCTTAATTTTCTGGTTCATGATATCTCCTATTTCCTATACATGAAAATTATGAATAATATATCTGCTCAATTAACTTTGTTTGGCTTTTGCAGTTTCAGTATCTCGAAGTTGTTTGCTTGGTCTAAGTGGTTATTTTTCATATTTGATCAGGTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTGGTAACTACCTTATACCATAAGCACTTTTTTTCCTTATTATCCATATAACTGTGATCAGTAATGTTCATGTGTGAGTAAAATGTTTTAACTTCAGTCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATTGTAAGTTGTTAATTTCTCTTTATCATCTGCTGATCTTCAAGGTCATTCTGTGCTTGTCACTTGAATTTGAACCTTGTTTGGTATTTGAACATTGGGTTGAGGCATTTTCTCTTCCCGTTCTTACCCTGAAAAGGCAGGGACAGCTTATGTTCGTGAACCGATAAACCTCTTTCATCTAACCTAGCCTCCTCCATCCCTCGGGACTAACAAGGGGTAGTACAGGAGTACTCACCTTTCAGCCTGATCTTAGCTGTGGACGAACCCTTAGGTTTTGGGGAAATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCAACACCATTAAACAAACTTAGTACCATATACATGTCATGCAAATGAATGTAATGATATCTCTTATAAGTACTTCATGTTTGGCCAGTAACGATGCAGGGTCTGAGATTAACTTGGTATATTTGAAAATGCTAGAGTGGTGTAGTGATATAATCAGATGTTCATTTCAGTTTTAGTGAATGGGGGATTGTGTCTATTGGAAATGTATATGATTTTTGTCTAACTCGAAAGTTAAGGTCTACTGTCTATCAATCTAGACGAATAGATTGACAAGATTATGTATCATCACAATTTTATGATCTGCAATTTATGCAGATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTGGTAAGTTAATTACTCATTTCTGATGGCCTACTTTGATGCACTTGAAATACAAAAGTTAAGCCCAACAAACTAAACATAAAGGCATTGTGATGTTTGTAACACAGGTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCC</genome_strand>
        <mrna_strand>GTTTCACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATTAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG.............................................................................................................................ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG..................................................................................................................................GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA....................................................................................................GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG..............................................................................................TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG........................................................................................................GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTTGAGTGCTCGGCCTACTTCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427175" ref_strand="+" ref_description="SGN-E427175 [STM-47-N6]">
      <seq>gcggagagagagcgagagcgagagcgagagctgcttcatgcctctctcttcattcctccttcacaaaattcaaaatccatacttaaaaccctaggtttttttcaatcaatttcccccaattttgttgggggaattcaatttttttattgggggaaacaaacctacaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggacccacaaagtcagtggcttcctaataacagcaatgttgataaagtgacggaatttataaagaccgtctatgttgataaaaaatatgctgggggcgcagtcctctgatagacctcctagagatacccagaacttgagaaaccacgacgatgatatgaggagagcaagttcttatcattcctattctcaaagtccaccatatgactttcagtatgaagaacggcgttatgggaaaaatgcaccagcactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="311720" stop="314884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="312032" g_stop="312278" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="265" r_length="245" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="312279" i_stop="313265" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="313266" g_stop="313327" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="327" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="313328" i_stop="313877" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="313878" g_stop="313965" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="415" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313966" i_stop="314068" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="314069" g_stop="314130" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="477" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="314131" i_stop="314223" i_length="93">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="314224" g_stop="314320" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="575" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="314321" i_stop="314461" i_length="141">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="314462" g_stop="314584" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="698" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E427175" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="312032" e_stop="312278"/>
          <exon e_start="313266" e_stop="313327"/>
          <exon e_start="313878" e_stop="313965"/>
          <exon e_start="314069" e_stop="314130"/>
          <exon e_start="314224" e_stop="314320"/>
          <exon e_start="314462" e_stop="314584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTA-GTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCT-GGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAGGTACTATATCTGGAGTAATATTTTGTCTATGCAGTACTTTAGACTAGAACGTTACTTGAAACTTCTAGCTATGATTTAGTCATAATATTCAAATCAGCACTGGGTCCAGACTAATGTGTTCAATATCCATTGAGTTGTCAGAATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACT</genome_strand>
        <mrna_strand>AGAGCGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTT-CACAAAATTCAAAATCCA-TACTTAAAACCCTAGGTTTTTTTCAATCAATTTCCCCCAATTTTG-TTGGGGGAATTCAATTTTTTTATTGGGGGAAACAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCACAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGACGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATACCCAG.............................................................................................................................................AACTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGGCGTTATGGGAAAAATGCACCAGCACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483053" ref_strand="+" ref_description="SGN-E483053 [cSTE-7-F6]">
      <seq>tggcggagagagagcgagagcgagagcgagagctgcttcatgcctctctcttcacttcctccttcacaaaattcaaaatccactacttaaaaccctaggtttttttcaactcaatttcccccaattttgttgggggaattcaatttttttattgggggaaaacaaacctacaagcatgaagtagcaggaagaagaaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggacccacaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagaccgtctatgttgataaaaaatatgctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="311720" stop="314585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="312032" g_stop="312278" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="275" r_length="253" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="312279" i_stop="313265" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="313266" g_stop="313327" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="337" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="313328" i_stop="313877" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="313878" g_stop="313965" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="425" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313966" i_stop="314068" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="314069" g_stop="314130" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="487" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="314131" i_stop="314223" i_length="93">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="314224" g_stop="314285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E483053" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="312032" e_stop="312278"/>
          <exon e_start="313266" e_stop="313327"/>
          <exon e_start="313878" e_stop="313965"/>
          <exon e_start="314069" e_stop="314130"/>
          <exon e_start="314224" e_stop="314285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCA-TTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTA-GTTTTTTTCAA-TCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGG-AAATAAACCTACAAGCATG-AGTAGCAGG-AG-AG-AAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGG</genome_strand>
        <mrna_strand>AGAGCGAGAGCTGCTTCATGCCTCTCTCTTCACTTCCTCCTT-CACAAAATTCAAAATCCACTACTTAAAACCCTAGGTTTTTTTCAACTCAATTTCCCCCAATTTTG-TTGGGGGAATTCAATTTTTTTATTGGGGGAAAACAAACCTACAAGCATGAAGTAGCAGGAAGAAGAAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCACAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365844" ref_strand="+" ref_description="SGN-E365844 [cLPT-8-B12]">
      <seq>tcttcattcctccttggacaaaattcaaaatccatacttaaaaccctagttttttccaatcaatttcccccaaaattgtttggggaaattcaatttttcaattgggggaaataaacctagaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctccaaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggaccctcaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagactgtctatgttgataaaaaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="311758" stop="314581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="312058" g_stop="312278" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="312279" i_stop="313265" i_length="987">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="313266" g_stop="313327" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="282" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="313328" i_stop="313877" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="313878" g_stop="313965" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="370" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313966" i_stop="314068" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="314069" g_stop="314130" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="432" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="314131" i_stop="314223" i_length="93">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="314224" g_stop="314281" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="490" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E365844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="312058" e_stop="312278"/>
          <exon e_start="313266" e_stop="313327"/>
          <exon e_start="313878" e_stop="313965"/>
          <exon e_start="314069" e_stop="314130"/>
          <exon e_start="314224" e_stop="314281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCT</genome_strand>
        <mrna_strand>TCTTCATTCCTCCTTGGACAAAATTCAAAATCCA-TACTTAAAACCCTAGTTTTTTCCAATCAATTTCCCCCAAAATTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTAGAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCAAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACTGTCTATGTTGATAAAAAATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363341" ref_strand="+" ref_description="SGN-E363341 [cLPP-4-P19]">
      <seq>tcaatttcccccaaaattgtttggggaaattcaatttttcaattgggggaaataaacctagaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctccaaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccacagagatatatttaaaaagttgggaccctcaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagactgtctatgttgataaaaaatatgctggggcgcagttctctgatagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="311818" stop="314605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="312118" g_stop="312278" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="312279" i_stop="313265" i_length="987">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="313266" g_stop="313327" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="223" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="313328" i_stop="313877" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="313878" g_stop="313965" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="311" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="313966" i_stop="314068" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="314069" g_stop="314130" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="373" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="314131" i_stop="314223" i_length="93">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="314224" g_stop="314305" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="455" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E363341" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="312118" e_stop="312278"/>
          <exon e_start="313266" e_stop="313327"/>
          <exon e_start="313878" e_stop="313965"/>
          <exon e_start="314069" e_stop="314130"/>
          <exon e_start="314224" e_stop="314305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTCCTCTGATAGACCT</genome_strand>
        <mrna_strand>TCAATTTCCCCCAAAATTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTAGAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCAAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCACAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACTGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTTCTCTGATAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455034" ref_strand="+" ref_description="SGN-E455034 [cSTS-25-I19]">
      <seq>acctcctagagatacccagaacttgagaaaccacgacgatgatatgaggagagcaagttcttatcattcctattctcaaagtccaccatatgactttcagtatgaagaacggcgttatgggaaaaatgcaccagcactctctagaaagcccggatcagatcggggactttacgaaggaaaggtgtcgagtttcttgagtcctagtcgtttaagtgatcatatgtatgatgataggtttggtaatgaaggatctaatcccagagcttcagattactctgtgtctagtggaggtgatccattcaggtctgtagcacagagtcccaactttcagagaggcatcggaagtcccttaagtgacacctcaagggatatttcatatgaagatatacggcatgccaagaaagatgctggaagaatattacgagcacagagaactgcatcttctggaagttttgaatcgtttgacagcaattccttgtcattcaagtctgtaaattctgttggtttagcggatgttacttcagaatcaaagcaaacaatagagactcactctagtaaattgtcaactttcccctctttgccacaatcattgggacccggaaatccagatggccctgatctgttcaatgctccctcagttgctcaaaacgctccacctacaatttcaacaaagtctcatttgccagtgtcatcaccaaatggctccatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="314159" stop="316229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="314302" g_stop="314320" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="314321" i_stop="314461" i_length="141">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="314462" g_stop="314872" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="430" r_length="411" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="314873" i_stop="315665" i_length="793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="315666" g_stop="315928" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="693" r_length="263" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E455034" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="314302" e_stop="314320"/>
          <exon e_start="314462" e_stop="314872"/>
          <exon e_start="315666" e_stop="315928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCTAGAGATATCCAGGTACTATATCTGGAGTAATATTTTGTCTATGCAGTACTTTAGACTAGAACGTTACTTGAAACTTCTAGCTATGATTTAGTCATAATATTCAAATCAGCACTGGGTCCAGACTAATGTGTTCAATATCCATTGAGTTGTCAGAATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATAATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGTGGTGATCCATTCAGGTCAGTCGCACAGAGCCCCAACTTCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAGGTCATTTAAATTTTATTTATTTAGCTATGTTATACTTCAAATTACTTGGTTATTCATTGGTGGAGCATATCCAGCCCTGAATTAGGGGTGTTCTTAATCAGAACATGCTGTTAAGTTATCTTTTTCTCCTCTTTCTGTTTGAGTTCCTGGTTATAGTGTCCTTACTAATGAGAATATGCTGTTAAGGAATTTTTTCTTCTCTTTCTGGTTTAGTCCTTACATGTCATAAATGGGCATGATAATATGACTCTCCAAGCTAAACAAATAGGGGCGCCCATCATTGTCCATGAACAACCAATGAACCTTTGCAAAGCATGTGGGCAGAATGTAGAGAATTTTAACATTTTTATCTCAACATATTATAATAGATTGATTTCTAGGTGGAGGTGCCAAAGGTCACACAAGAAAATAGCCATTTTCATAAAAATAAAAGAAAGAAGGAAATGTGATGGGCATCACACTTGACAATCATCTGCTTGTGAGTTGAGAAGTGACAATCTTACAGAAGCTTTTAGCGAGGTGGAATAGTCAAGACTTACTGAACATATCTCTTGGGTTTACTATATTTTTTAAATTTTTTTTTCAAAAAGGGTTTCTGTTCTCGATTATGATACATATTGAAGATAAATCGTTGAGCATGTTAAATCCATGATCGATGAGATGTAATTTGGATATTATGATCATGCAAGTGGAACTCAGATTTCTTTCTATTTGATTTATAGAAGAAGGCTCCTTGTTCTTTTCACTGCAGCATTTCCTTGTGAAACTGACATGATGGTATTTGTTGAATCAGAGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATC</genome_strand>
        <mrna_strand>ACCTCCTAGAGATACCCAG.............................................................................................................................................AACTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGGCGTTATGGGAAAAATGCACCAGCACTCTCTAGAAAGCCCGGATCAGATCGGGGACTTTACGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATCATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGAGGTGATCCATTCAGGTCTGTAGCACAGAGTCCCAACTTTCAGAGAGGCATCGGAAGTCCCTTAAGTGACACCTCAAGGGATATTTCATATGAAGATATACGGCATGCCAAGAAAGATGCTGGAAGAATATTACGAGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGCATCTTCTGGAAGTTTTGAATCGTTTGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTGGTTTAGCGGATGTTACTTCAGAATCAAAGCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCCACAATCATTGGGACCCGGAAATCCAGATGGCCCTGATCTGTTCAATGCTCCCTCAGTTGCTCAAAACGCTCCACCTACAATTTCAACAAAGTCTCATTTGCCAGTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363664" ref_strand="+" ref_description="SGN-E363664 [cLPP-3-N5]">
      <seq>ttcagagaggcatcggaagtcccttaagtgacacctcaagggatatttcatacgaagatgtacggcatgtcaagaaagatgctggaagaatattacgagcacagagaactgcatcttctggaagttttgaatcgttcgacagcaattccttgtcatttaagtctgtaaattctgtttgtttagcggatgctgtttcagaatcaaatcaaacaatagagactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="314469" stop="316086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="314769" g_stop="314872" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="314873" i_stop="315665" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="315666" g_stop="315786" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="225" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E363664" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="314769" e_stop="314872"/>
          <exon e_start="315666" e_stop="315786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAGGTCATTTAAATTTTATTTATTTAGCTATGTTATACTTCAAATTACTTGGTTATTCATTGGTGGAGCATATCCAGCCCTGAATTAGGGGTGTTCTTAATCAGAACATGCTGTTAAGTTATCTTTTTCTCCTCTTTCTGTTTGAGTTCCTGGTTATAGTGTCCTTACTAATGAGAATATGCTGTTAAGGAATTTTTTCTTCTCTTTCTGGTTTAGTCCTTACATGTCATAAATGGGCATGATAATATGACTCTCCAAGCTAAACAAATAGGGGCGCCCATCATTGTCCATGAACAACCAATGAACCTTTGCAAAGCATGTGGGCAGAATGTAGAGAATTTTAACATTTTTATCTCAACATATTATAATAGATTGATTTCTAGGTGGAGGTGCCAAAGGTCACACAAGAAAATAGCCATTTTCATAAAAATAAAAGAAAGAAGGAAATGTGATGGGCATCACACTTGACAATCATCTGCTTGTGAGTTGAGAAGTGACAATCTTACAGAAGCTTTTAGCGAGGTGGAATAGTCAAGACTTACTGAACATATCTCTTGGGTTTACTATATTTTTTAAATTTTTTTTTCAAAAAGGGTTTCTGTTCTCGATTATGATACATATTGAAGATAAATCGTTGAGCATGTTAAATCCATGATCGATGAGATGTAATTTGGATATTATGATCATGCAAGTGGAACTCAGATTTCTTTCTATTTGATTTATAGAAGAAGGCTCCTTGTTCTTTTCACTGCAGCATTTCCTTGTGAAACTGACATGATGGTATTTGTTGAATCAGAGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACT</genome_strand>
        <mrna_strand>TTCAGAGAGGCATCGGAAGTCCCTTAAGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGCATCTTCTGGAAGTTTTGAATCGTTCGACAGCAATTCCTTGTCATTTAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250363" ref_strand="+" ref_description="SGN-E250363 [cLEG-6-M13]">
      <seq>aagttttgaatcattcgacagcaattccttgtcattcaagtctgtaaattctgtttgtttagcggatgctgtttcagaatcaaatcaaacaatagagactcactctagtaaattgtcaactttcccctctttgcaacgatcatcgggacccggaaatccagatggccctgatctattcaatgctccctcagttcctcaaaacgctccaccttcagtttcaacaaaatctcgtctgccagtgtcatcatttcagccatccatttctgctggtccaattggtaattcacatcaaccatcgctcactctcccaccttcatctttggactttttctcagaggtgccaaacctgccttcagctgtaagtgctgatgaaaaaccatcatgtgaagtcacttccaaaaatgaaggatgggcaacatttgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttaccctgaaagacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="315383" stop="316559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="315683" g_stop="316259" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E250363" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="315683" e_stop="316259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACA</genome_strand>
        <mrna_strand>AAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCCTGAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360391" ref_strand="+" ref_description="SGN-E360391 [cLPP-8-F8]">
      <seq>atcatttcagccatccgtttctgctggtccaattggtaattcacatcaaccatcgctcactctcccaccttcatctttggactttttctcggaggtgccaaacctgccttcagctgcaagtgctgatgaaaaaccatcatgtgaagtcacttccaaaaatgaaggatgggcaacatttgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttacctgaaacgacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaacatttgatgtgcctcagcacgtgacattcactggaagtaataactttacctccaacaagattcaattaaagggtgattctcaatcgaattcggacccaactttctccgtcatgcaatggccatcacctatggaatctgcccctcatgggccagccgttagagactccactgcttgtgcattagatttatcaatgcctgctccatttcatggaggtgtgctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="315626" stop="316782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="315926" g_stop="316482" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E360391" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="315926" e_stop="316482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATG</genome_strand>
        <mrna_strand>ATCATTTCAGCCATCCGTTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCGGAGGTGCCAAACCTGCCTTCAGCTGCAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAACGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACATTCACTGGAAGTAATAACTTTACCTCCAACAAGATTCAATTAAAGGGTGATTCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731496" ref_strand="+" ref_description="SGN-E731496 [LA27BC06]">
      <seq>ctgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttacctgaaaagacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaacatttgatgtgcctcagcacgtgacactcactggaagtaataactttacctccaacacgattcaattaaagggtgatgctcaatcgaattcggacccaactttctccgtcatgcaatggccatcacctatggaatctgcccctcatgggccagccgttagagactccactgcttgtgcattagatttatcaatgcctgctccatttcatggaggtgtgctgaatgttgaagtaactccaagtgcaagaagtactgacttgtggagtgcctttgatgtttctaatgaccacttagctctcaagagtttgcctaatagtaaggaacaagttgtaatgaaccatgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="315803" stop="318115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="316102" g_stop="316514" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="316515" i_stop="316663" i_length="149">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="316664" g_stop="316789" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="316790" i_stop="316865" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="316866" g_stop="316979" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="653" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="316980" i_stop="317085" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="317086" g_stop="317172" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="740" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="317173" i_stop="317748" i_length="576">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="317749" g_stop="317815" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="807" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E731496" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="316102" e_stop="316514"/>
          <exon e_start="316664" e_stop="316789"/>
          <exon e_start="316866" e_stop="316979"/>
          <exon e_start="317086" e_stop="317172"/>
          <exon e_start="317749" e_stop="317815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGACGTAAGTGTACTCTTATTGAGTTTGGGAAGTGGCATAAGCAATTTATGAGCTGAAAATCATCTTTTGACAACTTCTGGTTAATTTATTATTATTTTGATGTGAAACCCTTCAATTTATGAGGTCGGATAATATTTACTCGTCTTTGGCAGTTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTG</genome_strand>
        <mrna_strand>CTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC.....................................................................................................................................................TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353274" ref_strand="+" ref_description="SGN-E353274 [cTOS-14-L20]">
      <seq>taatgaccacttagctctcaagagtttgcctaatagtaaggaacaagttgtaatgaaccatgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttgttggtggtgtgaccgaatcttggtttcctcagaacccagcaacagcttatggtcctgctggacagcatgggacattatttgtttcctcacaaccagctggcaatcaaatatcgaatgtgccgacacacggtcaagttgctgctattggcggaaatccatttgcataggattgtgtattcaactagttgttggatcagctagatcatcatttcaacttttagattcctatgtatttcatgtttgtattggntaaaaaagagaatgagagacaactaggcagaaattaccaaaatttcaaggcttgccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="316387" stop="320699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="316687" g_stop="316789" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="316790" i_stop="316865" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="316866" g_stop="316979" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="217" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="316980" i_stop="317085" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="317086" g_stop="317172" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="304" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="317173" i_stop="317748" i_length="576">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="317749" g_stop="317884" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="440" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="317885" i_stop="317962" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="317963" g_stop="318005" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="483" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="318006" i_stop="320200" i_length="2195">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="320201" g_stop="320399" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="682" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E353274" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="316687" e_stop="316789"/>
          <exon e_start="316866" e_stop="316979"/>
          <exon e_start="317086" e_stop="317172"/>
          <exon e_start="317749" e_stop="317884"/>
          <exon e_start="317963" e_stop="318005"/>
          <exon e_start="320201" e_stop="320399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATGGTATGTGATGTTTACTTTTTCAAGAAGTCTTTTCTTCTGTCAAACTTTCAGCCTCTCAAATATGTCCTGTCTCTGTAGGGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATCGTGAGTCATTCTACTTTTTCCATTTTCCTTGTAACCAATGTGCAAAAAATTTCTAGTGAAATCTTATTTCACCAGCAATATCAGCTCTCTACTTGCTAGATATAACATAATGCACAGGTCCTCTACTATGAAGATGCTTGAACATATTTGACACTGACAGGATTTCCACTTAATTGCTATTTTGTTCTTGTGTGTGTATTTTGGGATTATATGATATCTTCTGTCTGGTGAGAATTTTGTGTCTCCACGAGAATGCTGGTGCTGTTGAATTGCTTATGATAAAAAGTACAAAAGTACAGTTAACATACAAGAGGTAGATGGGGATTGTTAGAGGCCGAGTTAATCTAGTGACAGTTCGTGTTGTCACCAGATTTTTTGTGGTTGATAAGTGTCTGGCTGCTGAATCTAATTGCAGGGACATATATAGTGGTTAAAATGATTATGCTGGTCTTAGAGTTGATACTGATTCTGTTAAGAAGAATCTTTCTTTGTTCCTTCTTTTTGGAGATTTCGAAAGCTTTTTCAAAGTTCGAGAGGAGTTGAACAACGTGTTCCCTTGTATCCTTTATTCTTTAGAATCTCGTGTTGGATTAACGGACAACACAGACCTATGGATAGGCTGATGGATGGAGAATTTGAGGGGCTTGAGATAGATGGTGATGGAAGAGGAAATACGACTTCATCCTCACTTTTTGTAATGTTTTCTATCTTTCAGGTATACTTTGTATGGTGGGGGTAGGGGTTTGCCCTCTTTTATGTAATTTATCACTTCATTTAAAAAAAAAAAGAACTTCAGCATCTATCTGAGGCAGTATGGTTTACGGTTTGAAGCAGTGTCAGGATTACATATGATTGGTTCACACTTGATGGGGGTTTTGAATTCTAGTTGCACACCTTCAAGGCAGCACTTCTGGAATCGTGGAGATTTTCTCAAGAGGAGAATATTTATGGAAGGTTAATATCTACGAAATATGGATCAGAAGAATAATTAATTGTTCTAAGGTGGGGCAGATTGCCATTTTCAAAATATGGTTGTAGGGTAGGATAATTCTTATAGAGTGAATTTGTAGAGGGGGGGGGGGGGGGGAATACATATGGAAATAGAAGATTTGTAGATGCACTAGATATAATGTGGGTTAGTGCTACTAGAGTACAATTCTATAGAGGTGTATATTTCGGGGGAACATCCTTGGAGAACAAGTATCTGCAAGTGGTTAGTCTTTATCCACGGCACCAATCACTTCAAGCTGGATGATTGGGGCATCATGTGGGGTCCCCTTGAAATGGGATGACTGAGTGATCATGTGAGATAAAATTTTAGGAAGACCATCCCGCATTGGTGTTTTCCTTGGGAGAAAGAGGTGTTGAGTTTATATGGAGGGAGTGGGGCTGGTATCTCTCAAATAAAATTGTATTGCATGGAGTGGGCAGAACTGGCAATAAGAAGGAGGTGCTTAAGAAAGCCTGGAAGATTTTGTTGCTGAAATATGTATGTGTGTTTTGTGGCTGCTTGGTGTGATACTGTGATGTGTGGATGCCTTCTTAAAGCAGATAACTTAAGAAAGGGAAACTACCTTTTTAGGAGTATTTCCTGAACCTAAAGACAAGAAGAAGGTAATATGAAAATTGCCACAGGATGAGAAATTTACCCCTGTAATTGTATTTGGTTAATCCTATCAGATGCCACTCAAAGAGGAGTCTTTTTTAGATACAGATGTATTATATATTCTTTGAGGAGTCACTCTCTGAGTGAAACCTGTACTGTGGTAATTTGGCAAGTCTTCAACTTTAAGGTTAGCTCGTTAGACAGAAGCTTAGTTGAACTGCACTTAAATGACTAGCCAAAACATTTTTTTTCTCAATGTTGGTAGGGAAGTAGTGGAGTCGTGCCTAAACAATCACCCATGAATCAATACACGACATCTCCTCGTTCATTAGACAAAATGGAGCTATTATTAGATATTTTATTTTTCCAGAAAACAGTAAAAATAAAAAGAAAGCATTTCATTCAATGTGTGTGTGCCCATTGTTTGAAAGATCAAAGAGATCCTTTGTATGAGCAGTCCACTAATGCAAGCTCTCATAAATATGCATGTCGGATAGTGTAAAACATCTTGAAGAGTTTGCTTTCTGTATAGTGCAGTTCTGGATTGTATCCATTATCATAACTGCTAACTAGATTGTTCCTTGTGCAGGAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTC</genome_strand>
        <mrna_strand>TAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG..............................................................................GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGGNTAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAAATTTCAAGGCTTGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715827" ref_strand="+" ref_description="SGN-E715827 [FB15BE07]">
      <seq>catgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttgttggtggtgtgaccgaatcttggtttcctcagaacccagcaacagcttatggtcctgctggacagcatgggacattatttgtttcctcacaaccagctggcaatcaaatatcgaatgtgccgacacacggtcaagttgctgctattggcggaaatccatttgcataggattgtgtattcaactagttgttggatcagctagatcatcatttcaacttttagattcctatgtatttcatgtttgtattgttaaaaaaagagaatgagagacaactaggcagaaattaccaaatttcaaaggcttgccttttcttgttgaggcctacagtgtgttctgatactatggttgatgtgattatggctgaaatgttttgaggatgtccttcttggctactttggcgtattgattttcttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="316445" stop="320806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="316745" g_stop="316789" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="316790" i_stop="316865" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="316866" g_stop="316979" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="316980" i_stop="317085" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="317086" g_stop="317172" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="246" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="317173" i_stop="317748" i_length="576">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="317749" g_stop="317884" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="382" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="317885" i_stop="317962" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="317963" g_stop="318005" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="425" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="318006" i_stop="320200" i_length="2195">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="320201" g_stop="320506" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="731" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E715827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="316745" e_stop="316789"/>
          <exon e_start="316866" e_stop="316979"/>
          <exon e_start="317086" e_stop="317172"/>
          <exon e_start="317749" e_stop="317884"/>
          <exon e_start="317963" e_stop="318005"/>
          <exon e_start="320201" e_stop="320506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATGGTATGTGATGTTTACTTTTTCAAGAAGTCTTTTCTTCTGTCAAACTTTCAGCCTCTCAAATATGTCCTGTCTCTGTAGGGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATCGTGAGTCATTCTACTTTTTCCATTTTCCTTGTAACCAATGTGCAAAAAATTTCTAGTGAAATCTTATTTCACCAGCAATATCAGCTCTCTACTTGCTAGATATAACATAATGCACAGGTCCTCTACTATGAAGATGCTTGAACATATTTGACACTGACAGGATTTCCACTTAATTGCTATTTTGTTCTTGTGTGTGTATTTTGGGATTATATGATATCTTCTGTCTGGTGAGAATTTTGTGTCTCCACGAGAATGCTGGTGCTGTTGAATTGCTTATGATAAAAAGTACAAAAGTACAGTTAACATACAAGAGGTAGATGGGGATTGTTAGAGGCCGAGTTAATCTAGTGACAGTTCGTGTTGTCACCAGATTTTTTGTGGTTGATAAGTGTCTGGCTGCTGAATCTAATTGCAGGGACATATATAGTGGTTAAAATGATTATGCTGGTCTTAGAGTTGATACTGATTCTGTTAAGAAGAATCTTTCTTTGTTCCTTCTTTTTGGAGATTTCGAAAGCTTTTTCAAAGTTCGAGAGGAGTTGAACAACGTGTTCCCTTGTATCCTTTATTCTTTAGAATCTCGTGTTGGATTAACGGACAACACAGACCTATGGATAGGCTGATGGATGGAGAATTTGAGGGGCTTGAGATAGATGGTGATGGAAGAGGAAATACGACTTCATCCTCACTTTTTGTAATGTTTTCTATCTTTCAGGTATACTTTGTATGGTGGGGGTAGGGGTTTGCCCTCTTTTATGTAATTTATCACTTCATTTAAAAAAAAAAAGAACTTCAGCATCTATCTGAGGCAGTATGGTTTACGGTTTGAAGCAGTGTCAGGATTACATATGATTGGTTCACACTTGATGGGGGTTTTGAATTCTAGTTGCACACCTTCAAGGCAGCACTTCTGGAATCGTGGAGATTTTCTCAAGAGGAGAATATTTATGGAAGGTTAATATCTACGAAATATGGATCAGAAGAATAATTAATTGTTCTAAGGTGGGGCAGATTGCCATTTTCAAAATATGGTTGTAGGGTAGGATAATTCTTATAGAGTGAATTTGTAGAGGGGGGGGGGGGGGGGAATACATATGGAAATAGAAGATTTGTAGATGCACTAGATATAATGTGGGTTAGTGCTACTAGAGTACAATTCTATAGAGGTGTATATTTCGGGGGAACATCCTTGGAGAACAAGTATCTGCAAGTGGTTAGTCTTTATCCACGGCACCAATCACTTCAAGCTGGATGATTGGGGCATCATGTGGGGTCCCCTTGAAATGGGATGACTGAGTGATCATGTGAGATAAAATTTTAGGAAGACCATCCCGCATTGGTGTTTTCCTTGGGAGAAAGAGGTGTTGAGTTTATATGGAGGGAGTGGGGCTGGTATCTCTCAAATAAAATTGTATTGCATGGAGTGGGCAGAACTGGCAATAAGAAGGAGGTGCTTAAGAAAGCCTGGAAGATTTTGTTGCTGAAATATGTATGTGTGTTTTGTGGCTGCTTGGTGTGATACTGTGATGTGTGGATGCCTTCTTAAAGCAGATAACTTAAGAAAGGGAAACTACCTTTTTAGGAGTATTTCCTGAACCTAAAGACAAGAAGAAGGTAATATGAAAATTGCCACAGGATGAGAAATTTACCCCTGTAATTGTATTTGGTTAATCCTATCAGATGCCACTCAAAGAGGAGTCTTTTTTAGATACAGATGTATTATATATTCTTTGAGGAGTCACTCTCTGAGTGAAACCTGTACTGTGGTAATTTGGCAAGTCTTCAACTTTAAGGTTAGCTCGTTAGACAGAAGCTTAGTTGAACTGCACTTAAATGACTAGCCAAAACATTTTTTTTCTCAATGTTGGTAGGGAAGTAGTGGAGTCGTGCCTAAACAATCACCCATGAATCAATACACGACATCTCCTCGTTCATTAGACAAAATGGAGCTATTATTAGATATTTTATTTTTCCAGAAAACAGTAAAAATAAAAAGAAAGCATTTCATTCAATGTGTGTGTGCCCATTGTTTGAAAGATCAAAGAGATCCTTTGTATGAGCAGTCCACTAATGCAAGCTCTCATAAATATGCATGTCGGATAGTGTAAAACATCTTGAAGAGTTTGCTTTCTGTATAGTGCAGTTCTGGATTGTATCCATTATCATAACTGCTAACTAGATTGTTCCTTGTGCAGGAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</genome_strand>
        <mrna_strand>CATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG..............................................................................GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738012" ref_strand="+" ref_description="SGN-E738012 [LC12AA12]">
      <seq>gactattcaaattgatctatatttcaaccctggaattttacaattgtgtttgaattgatttgtaaaggtgggatttttattctttgtcttgatctagaagggaattgattctagttcatatttttgacaagaactaggtgggtacagtgaagaaaaattagatattcagatcccatttctgaggaagttgcttcattttaggtattgggttgtgaaggattgaagttaaaatgaggaaagctgtaatctttactattgaagtgtgttataggacagttaggaatcatccattccttgtgggtatgttgtgtttcttggtatttctgtacagatcatttccttttgtgttttcaatcttggtgtctgtctcccctattcttgtttgcactgctgcactgcttggaactttactaagttatggtcagcctaatatacctgtatttgaatgggaagaaaacacaactgatcatattgtgcctttggaaacacgagatgctattcttgttgagagtgacaatagttacttcaccgagagatatagtgatcaagagagggataaagtagaccaatcaacgcgtagtgaggttcataggggtaaaagatttggtgatcattctgctctaattggtggagttttagttggtggagttactgggcaagtggcaagggagttttatgagcataaaaatgaagacaaatttagtgatgctgaacttacggaggaccagtattctcctacttcgaagggtaatgaagagagcgttgagtttgataatgacaaatcagttgattcctttgattctaggagggctaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="321472" stop="322976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="321772" g_stop="321803" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="321804" i_stop="321887" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="321888" g_stop="322676" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="821" r_length="789" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E738012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="321772" e_stop="321803"/>
          <exon e_start="321888" e_stop="322676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATTCAAATTGATCTATATTTCAACCCTGGTATGCATTTTCTTTTCTTAATTCTCTTTGTTTAATCTATTATTGTTAATTCAATGTGAAAATCTTTTCTGGGTTTGTTTGCAGGAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</genome_strand>
        <mrna_strand>GACTATTCAAATTGATCTATATTTCAACCCTG....................................................................................GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369771" ref_strand="+" ref_description="SGN-E369771 [TUS-25-A3]">
      <seq>aagatacccgttttagaccttactttgttcctgatgtgatggctgctgaaggaacaagttattcaccattacaaaggcaccccagcgatctcagtgattccaaagtaagttctgttcttgaaacagagtcacagggctcaattgaagatctggaatacaagaacctcaatgaggaagatgtagaagacaagaacctgaatgaagaactggaaggcaaagacctgacagatgaacatatcttcaaggaaccaaagctgatatctaagatagagcatgctaccgaggatattggacatggaagccaatcctccgaagaagtagaatgtttggtcctaggtgcatctgataagagggatattgaactcgatgacactgatgttacactaccaaatgtggaaaatcatcatgatttggtaccaaatgtattccatgaagaaacagcagccagctccatggtacttgatccgtctaaaatttgttcaaagtcagcaacatctgaacaaaaatgcagtagtcagtcaagctcctcctcctcatcagaagtaggtgaaaagatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="323149" stop="324308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="323449" g_stop="324008" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E369771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="323449" e_stop="324008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</genome_strand>
        <mrna_strand>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247375" ref_strand="+" ref_description="SGN-E247375 [cLEF-46-E14]">
      <seq>aagtactccttaagtaaaccatactatgtgggtgatgtgaaggatgctgaagagaacaagttattcaccattacaaaggcaccccagcgatctcagtgattccaaagtaagttctgttcttgaaacagagtcacagggctcaattgaagatctggaatacaagaacctcaatgaggaagatgtagaagacaagaacctgaatgaagaactggaaggcaaagacctgacagatgaacatatcttcaaggaaccaaagctgatatctaagatagagcatgctaccgaggatattggacatggaagccaatcctccgaagaagtagaatgtttggtcctaggtgcatctgataagagggatattgaactcgatgacactgatgttacactaccaaatgtggaaaatcatcatgatttggtaccaaatgtattccatgaagaaacagcagccagctccatggtacttgatccgtctaaaatttgttcaaagtcagcaacatctgaacaaaaatgcagtagtcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="323180" stop="324267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="323465" g_stop="323968" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="522" r_length="505" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E247375" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="323465" e_stop="323968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAG-GAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTC</genome_strand>
        <mrna_strand>ACCATACTATGTGGGTGATGTGAAGGATGCTGAAGAGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537865" ref_strand="+" ref_description="SGN-E537865 [TUS-56-K24]">
      <seq>tggtgagatcaagttcagaggaatcgacgtgccatgttgaaaccatctctgagcatccttcgccgaatgtgtcagatctgaacatcacaagcagttcagtggaggagagttcacatttggaacctatttatgatgccagtcctccttcaattaagaaaaatacttcttcctcctcaattgcttcagatctgcttctagaatctgaaaccgggcatgcctctgagagggaacctgtggcaaataatcgagacattgagaagtccattccgacgaaggaacaaatattttcatcagcagattccaaagaattgcggctgagggaggcaataactgacaaacatgagcttgatgttgcaaagttggagatatcaaacaacgatgaagtctttggcagtgcaagtgctcttccggtgcctgtagcagatagtcagacatctattgattcgaagtcttccacaaaagaggcacctgtttcaacggagaaagcaaggaccacagaaagcttgaatgtgccaaaagttcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="323722" stop="326841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="324022" g_stop="324482" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="324483" i_stop="326475" i_length="1993">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="326476" g_stop="326541" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="527" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E537865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="324022" e_stop="324482"/>
          <exon e_start="326476" e_stop="326541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAAGTAAGTAATTAGTATATGTCCTATTCAGTACTATAAATTGCAAAAACTTTTATCATGCATATTCTTTAATCTCTTTAAAGATGAAGAGAGTTATCATGCATATCCTTTTACAGATGAACAGAGTTATCATGCATATTCTTTAATCTATTTGGATTAAATTATACCAAGATCTTAGTTTTTATCATGTTTTATATACTTTATTTAGCTTTTCTCTTAAAAATGTTTCTTTATTTGAGATAATTTAAAATTTATTTTTATAAATCTTTTTTTAATTCTCCATTACTTAATCCAATTATGTTTAATGGCATATGATGATAAAAACCAAAGACTAAGTTGGATGTGAAGTGATGAAGTATAGGCCAAAAGAACTGTTGGAAACAAATCATGTTCCAATTAACCTAATATATTGTTTAGATTATACATCTCAAATTCTTTGAATCTCAACCATAGTATTCATCCAATCCTACAATTCGAGATGCTTTTGTTAAACTGGTTGAATGTGATCTCTAAAGTCGACTGGTAACTCATAGTCTCATACTGGTAGGACTGAAAATAACTCTCTCTCCTCCAATCCTATTTTTTCTAGTGCTTATCTACTAGTTAAACAGTACGAATGGAGTGACAAACTCCGTGAGTTCGGAATTTAAATAAGTCACAAAAAAATAAAATTGACCAAAATAATCCTTTATTTTAGAAAGTAACTAAAATAGGCTTAGTGGAAGAAAAAATTTCATTTCCAATATTCCAAACATTTTCCGTTAGTCCCATAACGTTTATAATTTAATATATAATGGAACTATTTCTTACACTTTATTTATATCTTCTACACAATCTAAATCTAGAAAATTATCTTGTTCAGTTATTGGTTTAGGTGTCCATTTTTTATTCATTGTATCTTTAAATATTGAATATATTTGTATTCTATTTTAGATATATTATCTATTAATTGATCTAAGTCGGTCAATGATTTATCACTCTCCAAAATTTACTTGTCCTTGTGATAAAAATGAAGTAGGTATTTTCTGACTATAATCATAATAATACTATTTATACCCCATTCTTTTATAAATTGGTGAAAGAAATATATGATATTTGACATTAATTGAATATTTAGAATTGTGTTTGGGAGGACAATTATAATAAACGGTATTTCCATCATGTATAATTTCGCCATCCTAATAAATCGAAACTCTAACTTTTGGTTAAGAAGACATTATTTTGTGATTGAAATGAAGAATAATAGAAAACTAAAGATGTTGAATGTGCTATGTCTGAATGTCTTTAAATAGAGCTTGGATGAGCTTTCAGAATAAAAAAAATAAAAATACATAGTGTAATAACTTTTTTATTTTTATGATATGTCAAATCAATATAATTGTCTGACAAACACTACAAAAACATCATAAGGAGAGCAAAACTTGAAAAATATTCCTCTTTGTAAAATGTAAGTTTTTCTTCCGCTTTATAAAGTGCAAGAAAAAGTTGAATTTTCAAAGGGCAAGAAAAACTTACAATTTATAAAGTGTAAGAAATAATTCCGTTATATATTAGAATATACTCGTTACGGACTAACGGAAAACGTTTGGAATATTGGATAAAGTGGAATTTTTTCTTCCACTAAGCCTATTTTAGTTACTTCCTAAAATAGTGGCTTATATTGGTCAATTTTATTTTTTTGTGGCTTATTTAGGTTCCGAACTCTTCAATTGAAGAGGTTTGGGACAATACTCCTACTTATGACAGTCATCATCATTCATAATCAAAGGCCAGCTAATGAATTAAACCATAATTATAGCTATTTATAGTAACTACAAGAAAAGCTAAGATATGACTAAAATGGCCGTTACACCTCAAATTCTGATTCCTTTCTTGCTCTCAAAGCTTTTGATGTTAGGTTTGAAACATGGGAGTTATCAGTATAGTTCAACCTGTACTATGTCTTCGCATTTATTTGGATTAAATGAGTCTAAGTGAATCTAATTATGATATACAGGAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAA</genome_strand>
        <mrna_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGCCAAAAGTTCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265370" ref_strand="+" ref_description="SGN-E265370 [cLEI-9-E5]">
      <seq>ggtgagatcaatttcagaggaatcgacgtgccatgttgggaccatctctgagcatccttcgccgaatgtgtcagatctgaacatcacaagcagttcagtggaggagagttcacatttggaacctatttatgatgccagtcctccttcaattaagaaaaatacttcttcctcctcaattgcttcagatctgcttctagaatctgaaaccgggcatgcctctgagagggaacctgtggcaaataatcgagacattgagaagtccattccgacgaaggaacaaatattttcatcagcagattccaaagaattgcggctgagggaggcaataactgacaaacatgagcttgatgttgcaaaggtggagatatcaaacaacgatgaagtctttggcagtgcaagtgctcttccggtgcctgtagcagatagtcagacatctattgattcgaagtcttccacaaaagaggcacctgtttcaacggagaaagcaaggaccacagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="323723" stop="326816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="324023" g_stop="324482" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="324483" i_stop="326475" i_length="1993">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="326476" g_stop="326516" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="501" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E265370" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="324023" e_stop="324482"/>
          <exon e_start="326476" e_stop="326516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAAGTAAGTAATTAGTATATGTCCTATTCAGTACTATAAATTGCAAAAACTTTTATCATGCATATTCTTTAATCTCTTTAAAGATGAAGAGAGTTATCATGCATATCCTTTTACAGATGAACAGAGTTATCATGCATATTCTTTAATCTATTTGGATTAAATTATACCAAGATCTTAGTTTTTATCATGTTTTATATACTTTATTTAGCTTTTCTCTTAAAAATGTTTCTTTATTTGAGATAATTTAAAATTTATTTTTATAAATCTTTTTTTAATTCTCCATTACTTAATCCAATTATGTTTAATGGCATATGATGATAAAAACCAAAGACTAAGTTGGATGTGAAGTGATGAAGTATAGGCCAAAAGAACTGTTGGAAACAAATCATGTTCCAATTAACCTAATATATTGTTTAGATTATACATCTCAAATTCTTTGAATCTCAACCATAGTATTCATCCAATCCTACAATTCGAGATGCTTTTGTTAAACTGGTTGAATGTGATCTCTAAAGTCGACTGGTAACTCATAGTCTCATACTGGTAGGACTGAAAATAACTCTCTCTCCTCCAATCCTATTTTTTCTAGTGCTTATCTACTAGTTAAACAGTACGAATGGAGTGACAAACTCCGTGAGTTCGGAATTTAAATAAGTCACAAAAAAATAAAATTGACCAAAATAATCCTTTATTTTAGAAAGTAACTAAAATAGGCTTAGTGGAAGAAAAAATTTCATTTCCAATATTCCAAACATTTTCCGTTAGTCCCATAACGTTTATAATTTAATATATAATGGAACTATTTCTTACACTTTATTTATATCTTCTACACAATCTAAATCTAGAAAATTATCTTGTTCAGTTATTGGTTTAGGTGTCCATTTTTTATTCATTGTATCTTTAAATATTGAATATATTTGTATTCTATTTTAGATATATTATCTATTAATTGATCTAAGTCGGTCAATGATTTATCACTCTCCAAAATTTACTTGTCCTTGTGATAAAAATGAAGTAGGTATTTTCTGACTATAATCATAATAATACTATTTATACCCCATTCTTTTATAAATTGGTGAAAGAAATATATGATATTTGACATTAATTGAATATTTAGAATTGTGTTTGGGAGGACAATTATAATAAACGGTATTTCCATCATGTATAATTTCGCCATCCTAATAAATCGAAACTCTAACTTTTGGTTAAGAAGACATTATTTTGTGATTGAAATGAAGAATAATAGAAAACTAAAGATGTTGAATGTGCTATGTCTGAATGTCTTTAAATAGAGCTTGGATGAGCTTTCAGAATAAAAAAAATAAAAATACATAGTGTAATAACTTTTTTATTTTTATGATATGTCAAATCAATATAATTGTCTGACAAACACTACAAAAACATCATAAGGAGAGCAAAACTTGAAAAATATTCCTCTTTGTAAAATGTAAGTTTTTCTTCCGCTTTATAAAGTGCAAGAAAAAGTTGAATTTTCAAAGGGCAAGAAAAACTTACAATTTATAAAGTGTAAGAAATAATTCCGTTATATATTAGAATATACTCGTTACGGACTAACGGAAAACGTTTGGAATATTGGATAAAGTGGAATTTTTTCTTCCACTAAGCCTATTTTAGTTACTTCCTAAAATAGTGGCTTATATTGGTCAATTTTATTTTTTTGTGGCTTATTTAGGTTCCGAACTCTTCAATTGAAGAGGTTTGGGACAATACTCCTACTTATGACAGTCATCATCATTCATAATCAAAGGCCAGCTAATGAATTAAACCATAATTATAGCTATTTATAGTAACTACAAGAAAAGCTAAGATATGACTAAAATGGCCGTTACACCTCAAATTCTGATTCCTTTCTTGCTCTCAAAGCTTTTGATGTTAGGTTTGAAACATGGGAGTTATCAGTATAGTTCAACCTGTACTATGTCTTCGCATTTATTTGGATTAAATGAGTCTAAGTGAATCTAATTATGATATACAGGAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAG</genome_strand>
        <mrna_strand>GGTGAGATCAATTTCAGAGGAATCGACGTGCCATGTTGGGACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGGTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204064" ref_strand="+" ref_description="SGN-E204064 [cLEC-22-O24]">
      <seq>tttgattaataagcagacccttgaagagaatgctgacagacgcgtccttcatgattcgattgatgatgtgcatgttagagaatccaaaggaaaaggagtttctctacattcacaggatgtgggggcagacttagctgtgaaacaagtcatgaaaaatgatatagataaaccaaacacgagccttcaacaagcattaaaaactgaatcacgtgaagctagctcatctaagaactccgaatcaagtctcaagaaaattgttgtatctggaagaagtgaagctgatgcaggcaaaatagatcaggaagttgtaaaacaagaagataaggtaactaccaccgaagagccaaatcttgccgttgagttgcctcaagagacaggtgtagttaccggtgatgttatagtcaagaaagaaaaccacacaagtcaggctcaagttcaagttccagtgacttcaaaagaaaatgtggatagctagaaaattgggagaacaggaggttgcattacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0201C12-whXFt/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0201C12.2" temp_strand="+" temp_description="C10HBa0201C12.2  AC233127.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0201C12 upload_account_name:manual">
        <position start="326418" stop="327192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="326718" g_stop="327192" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0201C12.2" gen_strand="+" ref_id="SGN-E204064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0201C12.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="326718" e_stop="327192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAAAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAG</genome_strand>
        <mrna_strand>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAGAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>216</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10542" PGL_stop="11042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10542" e_stop="11042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="10542" e_stop="11042" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10542" stop="11042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTTATTTAAATTAAAACTTGATAGAAAACATCTTCAAAGGCTACCCAGATGCTCGACGAGGTCTGGATGAAGTCGAGGTCCAGTTGCTAACGTTGATCTTTGCTTCCTTGCTTCCACTACGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCATCTTCTTTGGTTAGTGACAACCCCTTCAAGTCGTCTGAGATCTCATCAATAATGCTCCCCATGAAACCTGCTGATCAAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAAAGGATAGTAGTACCCAGCTCTAGGTGGTTTCCAATCGAGCCATTCTTAGGTAGTGTACTTATATCTCAAGCCAAAAGTGGTGGAATGTCGAACAGGTTGTATAGGTTCAATTATCCCTTGCAATTCAACCCCTGAACCTTTCCCAAGCTCAAAACCAAACCAAACCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGTAACTCAATATTACC</gDNA_template>
            <first_frame> T  L  L  F  K  L  K  L  D  R  K  H  L  Q  R  L  P  R  C  S  T  R  S  G  *  S  R  G  P  V  A  N  V  D  L  C  F  L  A  S  T  T  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  I  F  F  G  *  *  Q  P  L  Q  V  V  *  D  L  I  N  N  A  P  H  E  T  C  *  S  K  *  L  M  Q  W  R  Y  G  F  L  Q  R  I  V  V  P  S  S  R  W  F  P  I  E  P  F  L  G  S  V  L  I  S  Q  A  K  S  G  G  M  S  N  R  L  Y  R  F  N  Y  P  L  Q  F  N  P  *  T  F  P  K  L  K  T  K  P  N  H  H  I  Y  D  F  L  A  E  P  R  L  *  L  N  I  T </first_frame>
            <second_frame>  L  F  Y  L  N  *  N  L  I  E  N  I  F  K  G  Y  P  D  A  R  R  G  L  D  E  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  R  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  M  L  P  M  K  P  A  D  Q  N  D  *  C  N  G  G  M  G  F  F  K  G  *  *  Y  P  A  L  G  G  F  Q  S  S  H  S  *  V  V  Y  L  Y  L  K  P  K  V  V  E  C  R  T  G  C  I  G  S  I  I  P  C  N  S  T  P  E  P  F  P  S  S  K  P  N  Q  T  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </second_frame>
            <third_frame>   S  F  I  *  I  K  T  *  *  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  K  S  R  S  S  C  *  R  *  S  L  L  P  C  F  H  Y  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  H  L  L  W  L  V  T  T  P  S  S  R  L  R  S  H  Q  *  C  S  P  *  N  L  L  I  K  M  I  D  A  M  A  V  W  V  S  S  K  D  S  S  T  Q  L  *  V  V  S  N  R  A  I  L  R  *  C  T  Y  I  S  S  Q  K  W  W  N  V  E  Q  V  V  *  V  Q  L  S  L  A  I  Q  P  L  N  L  S  Q  A  Q  N  Q  T  K  P  S  Y  L  *  F  F  G  *  T  K  V  V  T  Q  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10561" stop="10800"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLIENIFKGYPDARRGLDEVEVQLLTLIFASLLPLRPPFSSSLITTLQTFPSSLVSDNPFKSSEISSIMLPMKPADQND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35062" PGL_stop="35457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35062" e_stop="35457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="35062" e_stop="35457" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35062" stop="35292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35072" stop="35453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35130" stop="35457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAATTTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTAACGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACTTTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTCCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAATTATTGTAAGAATAACTGTTA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  N  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *  G  N  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  L  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  L  L </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  I  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  T  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  F  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  S  I  L  F  L  F  L  F  I  N  F  I  N  T  N  Y  C  K  N  N  C   </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  F  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R  *  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  L  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  P  S  C  F  C  F  C  S  L  T  S  *  I  Q  I  I  V  R  I  T  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36194" PGL_stop="37255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36194" e_stop="36315"/>
            <exon e_start="36616" e_stop="37141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36194" e_stop="36315" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="36316" i_stop="36615" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="36616" e_stop="37141" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36194" stop="36315"/>
              <exon start="36616" stop="37141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAG : GTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATATGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</gDNA_template>
            <first_frame> P  L  P  S  C  C  K  T  K  K  L  K  G  F  R  F  S  K  M  I  N  G  S  E  C  L  L  S  H  M  V  Y  S  S  M  L  E  I  K  L  R :   *  *  A  M  A  S  L  K  A  R  C  T  G  W  *  R  M  Q  N  E  K  E  I  A  L  L  S  S  L  C  Q  M  Y  M  L  G  L  D  Q  *  R  S  L  S  T  R  K  G  R  E  G  T  R  T  L  R  I  M  L  L  S  S  S  K  A  I  S  R  G  K  Y  Q  *  K  Q  Q  R  *  A  K  N  F  I  S  *  C  W  F  L  L  F  L  Y  L  Y  V  H  *  S  W  L  P  V  L  R  T  S  P  T  L  R  S  G  H  A  L  R  R  A  S  S  *  I  *  A  R  Q  R  I  D  L  Q  P  I  V  I  H  L  R  N  I  L  N  A  *  Y  V  P  K  I  G  V  R  C  A  Y  T  *  P  S  *  T  L  L  V  R  L  N  *  L  Y  Y  C  C  A </first_frame>
            <second_frame>  H  Y  H  P  V  A  R  Q  R  S  *  R  A  S  G  S  Q  R  *  S  M  V  Q  S  A  C  C  P  I  W  F  T  H  Q  C  W  R  S  S  *   : G  N  E  Q  W  H  L  *  K  P  G  A  Q  G  G  D  E  C  R  T  R  K  K  *  P  C  C  L  H  Y  A  R  C  T  C  W  D  W  T  S  R  E  A  Y  Q  R  G  K  A  E  R  V  Q  G  H  *  E  L  C  C  S  L  L  P  K  L  S  A  G  E  N  T  N  R  S  S  K  D  K  P  R  I  S  L  A  D  V  G  S  F  F  S  S  I  C  M  F  T  S  R  G  C  L  C  C  A  R  A  Q  H  *  D  L  D  M  L  *  E  G  Q  A  L  E  Y  K  Q  D  N  G  L  I  Y  N  L  L  L  F  I  Y  E  I  Y  *  M  H  N  M  Y  Q  K  *  E  *  G  A  R  T  P  N  L  P  K  P  Y  L  *  D  *  T  D  Y  I  I  A  V   </second_frame>
            <third_frame>   I  T  I  L  L  Q  D  K  E  V  E  G  L  Q  V  L  K  D  D  Q  W  F  R  V  P  V  V  P  Y  G  L  L  I  N  V  G  D  Q  V  E  :  V  M  S  N  G  I  F  K  S  P  V  H  R  V  V  T  N  A  E  R  E  R  N  S  L  A  V  F  I  M  P  D  V  H  V  G  I  G  P  V  E  K  L  I  N  E  E  R  P  R  G  Y  K  D  I  K  N  Y  V  A  L  F  F  Q  S  Y  Q  Q  G  K  I  P  I  E  A  A  K  I  S  Q  E  F  H  *  L  M  L  V  P  S  F  P  L  F  V  C  S  L  V  V  V  A  C  A  A  H  E  P  N  T  K  I  W  T  C  S  K  K  G  K  L  L  N  I  S  K  T  T  D  *  S  T  T  Y  C  Y  S  F  T  K  Y  T  K  C  I  I  C  T  K  N  R  S  K  V  R  V  H  L  T  F  L  N  L  T  C  E  T  K  L  I  I  L  L  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36196" stop="36315"/>
                    <exon start="36616" stop="36867"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITILLQDKEVEGLQVLKDDQWFRVPVVPYGLLINVGDQVEVMSNGIFKSPVHRVVTNAERERNSLAVFIMPDVHVGIGPVEKLINEERPRGYKDIKNYVALFFQSYQQGKIPIEAAKISQEFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36678" e_stop="37016"/>
            <exon e_start="37068" e_stop="37074"/>
            <exon e_start="37249" e_stop="37255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.927" e_score="0.988"/>
          <exon-intron don_prob="0.208" acc_prob="0.106" e_score="0.429"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="36678" e_stop="37016" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="37017" i_stop="37067" i_length="51"/>
          </intron>
          <exon e_serial="2" e_score="0.429">
            <gDNA_exon_boundary e_start="37068" e_stop="37074" e_length="7"/>
          </exon>
          <intron i_serial="2" don_prob="0.208" acc_prob="0.106">
            <gDNA_intron_boundary i_start="37075" i_stop="37248" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="37249" e_stop="37255" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36678" stop="37016"/>
              <exon start="37068" stop="37074"/>
              <exon start="37249" stop="37255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTA : GAGTAAG : AACAAAA</gDNA_template>
            <first_frame> K  K  *  P  C  C  L  H  Y  A  R  C  T  C  W  D  W  T  S  R  E  A  Y  Q  R  G  K  A  E  R  V  Q  G  H  *  E  L  C  C  S  L  L  P  K  L  S  A  G  E  N  T  N  R  S  S  K  D  K  P  R  I  S  L  A  D  V  G  S  F  F  S  S  I  C  M  F  T  S  R  G  C  L  C  C  A  R  A  Q  H  *  D  L  D  M  L  *  E  G  Q  A  L  E  Y  K  Q  D  N  G  L  I  Y  N  L  :  E  *   : E  Q   </first_frame>
            <second_frame>  R  N  S  L  A  V  F  I  M  P  D  V  H  V  G  I  G  P  V  E  K  L  I  N  E  E  R  P  R  G  Y  K  D  I  K  N  Y  V  A  L  F  F  Q  S  Y  Q  Q  G  K  I  P  I  E  A  A  K  I  S  Q  E  F  H  *  L  M  L  V  P  S  F  P  L  F  V  C  S  L  V  V  V  A  C  A  A  H  E  P  N  T  K  I  W  T  C  S  K  K  G  K  L  L  N  I  S  K  T  T  D  *  S  T  T  * :   S  K  :  N  K  </second_frame>
            <third_frame>   E  I  A  L  L  S  S  L  C  Q  M  Y  M  L  G  L  D  Q  *  R  S  L  S  T  R  K  G  R  E  G  T  R  T  L  R  I  M  L  L  S  S  S  K  A  I  S  R  G  K  Y  Q  *  K  Q  Q  R  *  A  K  N  F  I  S  *  C  W  F  L  L  F  L  Y  L  Y  V  H  *  S  W  L  P  V  L  R  T  S  P  T  L  R  S  G  H  A  L  R  R  A  S  S  *  I  *  A  R  Q  R  I  D  L  Q  P   : R  V  R :   T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40636" PGL_stop="41948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40636" e_stop="40906"/>
            <exon e_start="41701" e_stop="41948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="40636" e_stop="40906" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40907" i_stop="41700" i_length="794"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="41701" e_stop="41948" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40636" stop="40906"/>
              <exon start="41701" stop="41948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAG : GCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGCAAG</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  *  I  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  L  C  L  I  I  T  S  L  P  Y  L  I  R  T  E   : G  K  R  N  S  I  R  R  R  R  R  *  *  R  I  R  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  G  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  W  L  F  V  G  L  S  V  S  K </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  Y  T  Q  Q  K  K  P  R  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  P  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  E  I  F  A  *  *  *  L  P  Y  L  I  *  *  G  L  K  :  A  K  G  T  L  *  E  E  E  D  V  D  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  C  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  G  S  L  *  G  *  V  L  A   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  V  N  I  R  S  K  R  S  Q  D  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  L  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  K  S  L  L  N  N  N  F  L  T  L  S  D  K  D  *  R :   Q  K  E  L  Y  K  K  K  K  T  L  M  K  N  T  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  R  I  A  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  I  V  Q  R  V  G  L  A  L  C  R  V  E  C  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40905" stop="40906"/>
                    <exon start="41701" stop="41944"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTLMKNTTTSRREQGRIIHQIEVFKVDRIATFKTFLSKKVLSCRTICLVFVLNCSLQFIVQRVGLALCRVEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="90512" PGL_stop="85817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90512" e_stop="89979"/>
            <exon e_start="89465" e_stop="89453"/>
            <exon e_start="87275" e_stop="87229"/>
            <exon e_start="85833" e_stop="85817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.757" acc_prob="0.647" e_score="0.927"/>
          <exon-intron don_prob="0.000" acc_prob="0.772" e_score="0.692"/>
          <exon-intron don_prob="0.990" acc_prob="0.655" e_score="0.468"/>
          <exon-only e_score="0.471"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="90512" e_stop="89979" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.757" acc_prob="0.647">
            <gDNA_intron_boundary i_start="89978" i_stop="89466" i_length="513"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="89465" e_stop="89453" e_length="13"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.772">
            <gDNA_intron_boundary i_start="89452" i_stop="87276" i_length="2177"/>
          </intron>
          <exon e_serial="3" e_score="0.468">
            <gDNA_exon_boundary e_start="87275" e_stop="87229" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.655">
            <gDNA_intron_boundary i_start="87228" i_stop="85834" i_length="1395"/>
          </intron>
          <exon e_serial="4" e_score="0.471">
            <gDNA_exon_boundary e_start="85833" e_stop="85817" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90512" stop="89979"/>
              <exon start="89465" stop="89453"/>
              <exon start="87275" stop="87229"/>
              <exon start="85833" stop="85817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGGGTTATGGACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAATCCATTTTTCCCATAAGCCCATTCTTATGAGGCAAATATAATCCTATTTAGGTCTTATTTTCAGATATAAAAAGAGTTTTTCAGCAGCCAAAAAGAAAAAAAAAGAGCAGTTTTTCGCAGTAAAAAATTCAGCCCTAACAACCAACTTCAAATTGTGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGAAAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGAAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTGTTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCAAAGGGTTTTCCAC : GTAAGAGAATAAG : TTTGACTCTAAAAAGGAGACCATGACAATTAATCGTGGATGGAGGGA : CAATGAGTGGTTTGCCT</gDNA_template>
            <first_frame> C  W  V  M  D  L  F  P  F  L  C  G  *  I  K  V  Q  F  G  P  I  H  F  S  H  K  P  I  L  M  R  Q  I  *  S  Y  L  G  L  I  F  R  Y  K  K  S  F  S  A  A  K  K  K  K  K  E  Q  F  F  A  V  K  N  S  A  L  T  T  N  F  K  L  *  F  P  L  R  F  L  S  D  *  A  D  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  K  E  L  D  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  *  N  L  I  L  L  L  L  V  V  *  H  L  F  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  Q  R  V  F  H  :  V  R  E  *   : V  *  L  *  K  G  D  H  D  N  *  S  W  M  E  G  :  Q  *  V  V  C   </first_frame>
            <second_frame>  V  G  L  W  T  F  F  P  S  Y  V  D  K  *  K  S  N  L  D  Q  S  I  F  P  I  S  P  F  L  *  G  K  Y  N  P  I  *  V  L  F  S  D  I  K  R  V  F  Q  Q  P  K  R  K  K  K  S  S  F  S  Q  *  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  K  S  W  I  W  W  P  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  E  I  L  F  C  C  C  S  L  F  D  T  C  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  K  G  F  S  T :   *  E  N  K  :  F  D  S  K  K  E  T  M  T  I  N  R  G  W  R  D :   N  E  W  F  A  </second_frame>
            <third_frame>   L  G  Y  G  P  F  S  L  P  M  W  I  N  K  S  P  I  W  T  N  P  F  F  P  *  A  H  S  Y  E  A  N  I  I  L  F  R  S  Y  F  Q  I  *  K  E  F  F  S  S  Q  K  E  K  K  R  A  V  F  R  S  K  K  F  S  P  N  N  Q  L  Q  I  V  I  P  A  S  F  L  V  R  L  S  *  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  E  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  K  S  Y  F  V  V  A  R  C  L  T  L  V  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P   : R  K  R  I  S :   L  T  L  K  R  R  P  *  Q  L  I  V  D  G  G   : T  M  S  G  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="89966" PGL_stop="90389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89966" e_stop="90389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="89966" e_stop="90389" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89966" stop="90389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTTGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAACAAGTGTCAAACAACGAGCAACAACAAAATAAGATTTCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTTTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCACAATTTGAAGTTGGTTGTTAGGGCTGAATTTTTTACTGCGAAAAACTGCTCTTTTTTTTTCTTTTTGGCTGCTGAAAAACTCTTTTTATATCT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  T  S  V  K  Q  R  A  T  T  K  *  D  F  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  C  S  R  Q  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  N  Q  L  N  R  T  R  N  E  A  G  I  T  I  *  S  W  L  L  G  L  N  F  L  L  R  K  T  A  L  F  F  S  F  W  L  L  K  N  S  F  Y  I  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  L  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  K  Q  V  S  N  N  E  Q  Q  Q  N  K  I  S  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  V  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  F  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  F  Y  C  E  K  L  L  F  F  F  L  F  G  C  *  K  T  L  F  I  S </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  *  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  N  K  C  Q  T  T  S  N  N  K  I  R  F  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  S  N  S  F  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  S  A  Q  S  D  K  K  R  S  G  N  H  N  L  K  L  V  V  R  A  E  F  F  T  A  K  N  C  S  F  F  F  F  L  A  A  E  K  L  F  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="100470" PGL_stop="92060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100410" e_stop="100100"/>
            <exon e_start="95108" e_stop="94999"/>
            <exon e_start="94874" e_stop="94817"/>
            <exon e_start="94706" e_stop="94443"/>
            <exon e_start="93533" e_stop="93396"/>
            <exon e_start="93299" e_stop="93248"/>
            <exon e_start="93106" e_stop="93027"/>
            <exon e_start="92678" e_stop="92619"/>
            <exon e_start="92456" e_stop="92376"/>
            <exon e_start="92297" e_stop="92060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100410" e_stop="100100" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95108" e_stop="94999" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94817" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94706" e_stop="94443" e_length="264"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93533" e_stop="93396" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93299" e_stop="93248" e_length="52"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141"/>
          </intron>
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          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA : CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG : ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA : ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA : GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG : ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG : GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG : GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG : GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG : ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAGAAGTTCCACAT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  K  L  G  Q  K  *  I  V  I  I  L  T  K  F  Y  F  *  V  *  E  K  F  I  C  I  Y  R  N  F  P  L  *  K  G  Y  F  I  F  *  N  L  K  R  D  R  H  L  Q  A  S  N  K  F  H  Q  W  R  R  W  *  G  E  D  F  I  R  V  K  H  H  L  F  R  G  *  E  I  C  Q  S  T  F  L  V  P  K  S  K  L  K  F  L  N :   S  L  G  K  H  H  W  C  I  *  T  K  *  V  K  D  V  V  L  I  L  L  L  N  K  K  *  C  N  L  L  L  V  S  K  I   : D  Q  H  L  L  *  S  M  M  Q  K  R  K  D  *  S  P  L  E  K :   Q  H  *  S  S  Q  H  Q  G  I  W  E  *  V  W  H  L  W  L  P  *  K  A  T  K  *  F  *  Q  C  H  R  I  Q  A  W  R  G  G  *  P  *  E  H  L  E  L  I  *  *  S  L  I  Q  L  K  E  W  E  E  L  L  R  K  L  T  I  F  W  N  L  H  L  M  L  I  C  F  N  N  S  P  I  L  P  I  L  K :   F  I  L  R  L  L  A  L  K  S  G  K  I  L  K  V  M  L  T  S  L  S  W  E  *  E  V  E  A  Q  S  L  V  L  D  N  I  *  N  R  K  I  L  M  S  R :   Y  M  E  S  S  Q  L  K  A  M  Y  *  M  V  E  N  Q  :  V  L  M  K  *  L  A  M  G  L  D  S  S  R  I  S  L  T  W  M  *  W  K  K  F  *  W :   F  Q  V  K  N  R  *  T  W  L  G  S  W  H  *  R  K  A  L  W :   L  V  Y  H  Q  E  Q  I  L  *  P  H  L  D  S  P  T  D  Q  K  I  K  E  N  S  *  * :   Q  F  I  Q  V  L  E  R  G  T  C  H  L  F  C  M  K  I  S  G  K  R  H  K  T  C  N  L  Y  Q  L  I  S  V  Q  L  L  *  *  *  Y  *  *  N  *  Y  K  K  K  K  C  M  C  Y  I  F  *  N  N  V  Y  A  L  N  N  N  G  K  *  S  F  L  N  G  *  E  V  P  H </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  L  S  S  A  K  N  K  *  L  L  Y  *  Q  N  S  I  F  R  Y  R  K  N  S  S  V  Y  T  V  I  F  H  Y  K  R  G  I  L  S  F  E  I  *  R  E  I  D  I  Y  R  L  Q  I  N  F  I  N  G  V  V  G  E  E  K  I  L  F  E  *  S  I  I  C  S  E  A  K  R  S  A  K  V  P  S  W  Y  Q  N  Q  N  S  S  F  S   : T  H  W  E  N  T  I  G  V  S  K  Q  S  E  *  R  M  W  C  L  Y  C  C  *  T  R  N  D  A  T  Y  F  *  Y  Q  R  *  :  T  S  I  C  Y  D  Q  *  C  R  K  E  R  I  N  H  P  W  K   : N  N  T  N  R  A  N  I  R  E  Y  G  N  K  Y  G  I  Y  G  C  H  E  R  L  Q  N  D  F  D  N  A  I  V  Y  K  L  G  E  E  G  N  H  E  S  I  W  S  *  F  S  D  H  *  S  N  *  R  N  G  R  N  Y  *  E  S  L  R  S  F  G  I  Y  T  *  C  L  Y  A  S  T  I  L  Q  S  C  Q  Y  S   : S  S  F  *  D  Y  W  P  *  N  L  G  R  Y  S  R  *  C  *  H  L  C  H  G  N  R  K  W  R  H  S  L  W  C  W  T  I  S  E  I  E  K  S  *  C  Q   : D  I  W  N  R  A  S  *  K  Q  C  I  E  W  W  K  T  R :   S  S  *  N  N  W  Q  W  G  W  I  Q  A  G  Y  P  *  H  G  C  N  G  R  S  S  D   : G  F  K  *  R  I  G  K  H  G  *  G  V  G  I  E  G  R  P  Y   : G  W  Y  I  I  R  S  K  Y  C  S  R  T  *  T  R  Q  Q  T  R  K  *  R  K  T  H  S   : D  N  S  S  K  F  W  R  E  V  L  V  I  C  S  V  *  R  S  Q  E  R  G  T  K  H  A  T  C  I  S  *  L  V  F  N  Y  Y  S  D  S  T  S  E  T  S  T  R  K  K  N  V  C  A  T  F  S  E  I  M  F  M  L  *  I  I  M  E  S  N  L  F  *  T  V  K  K  F  H   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  *  A  R  P  K  I  N  S  Y  Y  T  N  K  I  L  F  L  G  I  G  K  I  H  L  Y  I  P  *  F  S  I  I  K  G  V  F  Y  L  L  K  F  E  E  R  *  T  F  T  G  F  K  *  I  S  S  M  A  S  L  V  R  R  R  F  Y  S  S  E  A  S  F  V  Q  R  L  R  D  L  P  K  Y  L  P  G  T  K  I  K  T  Q  V  S  Q  :  L  I  G  K  T  P  L  V  Y  L  N  K  V  S  E  G  C  G  A  Y  I  A  V  K  Q  E  M  M  Q  P  T  S  S  I  K  D  R :   P  A  F  A  M  I  N  D  A  E  K  K  G  L  I  T  P  G  K  :  T  T  L  I  E  P  T  S  G  N  M  G  I  S  M  A  F  M  A  A  M  K  G  Y  K  M  I  L  T  M  P  S  Y  T  S  L  E  R  R  V  T  M  R  A  F  G  A  D  L  V  I  T  D  P  T  K  G  M  G  G  T  I  K  K  A  Y  D  L  L  E  S  T  P  N  A  Y  M  L  Q  Q  F  S  N  P  A  N  T  Q  :  V  H  F  E  T  T  G  P  E  I  W  E  D  T  Q  G  N  V  D  I  F  V  M  G  I  G  S  G  G  T  V  S  G  V  G  Q  Y  L  K  S  K  N  P  N  V  K  :  I  Y  G  I  E  P  A  E  S  N  V  L  N  G  G  K  P   : G  P  H  E  I  T  G  N  G  V  G  F  K  P  D  I  L  D  M  D  V  M  E  E  V  L  M  :  V  S  S  E  E  S  V  N  M  A  R  E  L  A  L  K  E  G  L  M  :  V  G  I  S  S  G  A  N  T  V  A  A  L  R  L  A  N  R  P  E  N  K  G  K  L  I  V  :  T  I  H  P  S  F  G  E  R  Y  L  S  S  V  L  Y  E  D  L  R  K  E  A  Q  N  M  Q  P  V  S  V  D  *  C  S  I  I  I  V  I  V  L  V  K  L  V  Q  E  K  K  M  Y  V  L  H  F  L  K  *  C  L  C  F  K  *  *  W  K  V  I  F  S  E  R  L  R  S  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100222" stop="100100"/>
                    <exon start="95108" stop="94999"/>
                    <exon start="94874" stop="94817"/>
                    <exon start="94706" stop="94443"/>
                    <exon start="93533" stop="93396"/>
                    <exon start="93299" stop="93248"/>
                    <exon start="93106" stop="93027"/>
                    <exon start="92678" stop="92619"/>
                    <exon start="92456" stop="92376"/>
                    <exon start="92297" stop="92199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1062</number_coding_nucleotides>
                  <number_encoded_amino_acids>354</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSMASLVRRRFYSSEASFVQRLRDLPKYLPGTKIKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVITDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQVHFETTGPEIWEDTQGNVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGIEPAESNVLNGGKPGPHEITGNGVGFKPDILDMDVMEEVLMVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENKGKLIVTIHPSFGERYLSSVLYEDLRKEAQNMQPVSVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="100470" e_stop="100376"/>
            <exon e_start="97258" e_stop="97237"/>
            <exon e_start="96943" e_stop="96936"/>
            <exon e_start="95520" e_stop="95499"/>
            <exon e_start="95062" e_stop="94999"/>
            <exon e_start="94874" e_stop="94817"/>
            <exon e_start="94706" e_stop="94443"/>
            <exon e_start="93533" e_stop="93396"/>
            <exon e_start="93299" e_stop="93248"/>
            <exon e_start="93106" e_stop="93027"/>
            <exon e_start="92678" e_stop="92619"/>
            <exon e_start="92456" e_stop="92376"/>
            <exon e_start="92297" e_stop="92061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.676" e_score="0.727"/>
          <exon-intron don_prob="0.724" acc_prob="0.000" e_score="0.625"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.773"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100470" e_stop="100376" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100375" i_stop="97259" i_length="3117"/>
          </intron>
          <exon e_serial="2" e_score="0.727">
            <gDNA_exon_boundary e_start="97258" e_stop="97237" e_length="22"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.676">
            <gDNA_intron_boundary i_start="97236" i_stop="96944" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="96943" e_stop="96936" e_length="8"/>
          </exon>
          <intron i_serial="3" don_prob="0.724" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96935" i_stop="95521" i_length="1415"/>
          </intron>
          <exon e_serial="4" e_score="0.773">
            <gDNA_exon_boundary e_start="95520" e_stop="95499" e_length="22"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95498" i_stop="95063" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95062" e_stop="94999" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94817" e_length="58"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="94706" e_stop="94443" e_length="264"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="94442" i_stop="93534" i_length="909"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93533" e_stop="93396" e_length="138"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="93395" i_stop="93300" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93299" e_stop="93248" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="93247" i_stop="93107" i_length="141"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="93106" e_stop="93027" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.940" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93026" i_stop="92679" i_length="348"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="92678" e_stop="92619" e_length="60"/>
          </exon>
          <intron i_serial="11" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92618" i_stop="92457" i_length="162"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="92456" e_stop="92376" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="92375" i_stop="92298" i_length="78"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="92297" e_stop="92061" e_length="237"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100470" stop="100376"/>
              <exon start="97258" stop="97237"/>
              <exon start="96943" stop="96936"/>
              <exon start="95520" stop="95499"/>
              <exon start="95062" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95057" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95005" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94659" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619484" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94585" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623825" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94527" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94516" stop="94443"/>
              <exon start="93533" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93502" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93500" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93500" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93500" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93500" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93498" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93433" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93433" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93399" stop="93396"/>
              <exon start="93299" stop="93248"/>
              <exon start="93106" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93065" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422016" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93065" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93065" stop="93027"/>
              <exon start="92678" stop="92619"/>
              <exon start="92456" stop="92376"/>
              <exon start="92297" stop="92071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422015" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA : AGTGAACCAAACTTAACGGAGG : TGACGGAA : CACTAATTTAATGTTCTATTTT : GATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG : ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA : ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA : GTTCATTTTGAGACTACTGGCCCTGAAATCTGGGAAGATACTCAAGGTAATGTTGACATCTTTGTCATGGGAATAGGAAGTGGAGGCACAGTCTCTGGTGTTGGACAATATCTGAAATCGAAAAATCCTAATGTCAAG : ATATATGGAATCGAGCCAGCTGAAAGCAATGTATTGAATGGTGGAAAACCAG : GTCCTCATGAAATAACTGGCAATGGGGTTGGATTCAAGCCGGATATCCTTGACATGGATGTAATGGAAGAAGTTCTGATG : GTTTCAAGTGAAGAATCGGTAAACATGGCTAGGGAGTTGGCATTGAAGGAAGGCCTTATG : GTTGGTATATCATCAGGAGCAAATACTGTAGCCGCACTTAGACTCGCCAACAGACCAGAAAATAAAGGAAAACTCATAGTG : ACAATTCATCCAAGTTTTGGAGAGAGGTACTTGTCATCTGTTCTGTATGAAGATCTCAGGAAAGAGGCACAAAACATGCAACCTGTATCAGTTGATTAGTGTTCAATTATTATAGTGATAGTACTAGTGAAACTAGTACAAGAAAAAAAAATGTATGTGCTACATTTTCTGAAATAATGTTTATGCTTTAAATAATAATGGAAAGTAATCTTTTCTGAACGGTTAAGAAGTTCCACA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K :   V  N  Q  T  *  R  R  :  *  R  N :   T  N  L  M  F  Y  F  :  D  V  V  L  I  L  L  L  N  K  K  *  C  N  L  L  L  V  S  K  I   : D  Q  H  L  L  *  S  M  M  Q  K  R  K  D  *  S  P  L  E  K :   Q  H  *  S  S  Q  H  Q  G  I  W  E  *  V  W  H  L  W  L  P  *  K  A  T  K  *  F  *  Q  C  H  R  I  Q  A  W  R  G  G  *  P  *  E  H  L  E  L  I  *  *  S  L  I  Q  L  K  E  W  E  E  L  L  R  K  L  T  I  F  W  N  L  H  L  M  L  I  C  F  N  N  S  P  I  L  P  I  L  K :   F  I  L  R  L  L  A  L  K  S  G  K  I  L  K  V  M  L  T  S  L  S  W  E  *  E  V  E  A  Q  S  L  V  L  D  N  I  *  N  R  K  I  L  M  S  R :   Y  M  E  S  S  Q  L  K  A  M  Y  *  M  V  E  N  Q  :  V  L  M  K  *  L  A  M  G  L  D  S  S  R  I  S  L  T  W  M  *  W  K  K  F  *  W :   F  Q  V  K  N  R  *  T  W  L  G  S  W  H  *  R  K  A  L  W :   L  V  Y  H  Q  E  Q  I  L  *  P  H  L  D  S  P  T  D  Q  K  I  K  E  N  S  *  * :   Q  F  I  Q  V  L  E  R  G  T  C  H  L  F  C  M  K  I  S  G  K  R  H  K  T  C  N  L  Y  Q  L  I  S  V  Q  L  L  *  *  *  Y  *  *  N  *  Y  K  K  K  K  C  M  C  Y  I  F  *  N  N  V  Y  A  L  N  N  N  G  K  *  S  F  L  N  G  *  E  V  P   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L   : K  *  T  K  L  N  G  G :   D  G   : T  L  I  *  C  S  I  L :   M  W  C  L  Y  C  C  *  T  R  N  D  A  T  Y  F  *  Y  Q  R  *  :  T  S  I  C  Y  D  Q  *  C  R  K  E  R  I  N  H  P  W  K   : N  N  T  N  R  A  N  I  R  E  Y  G  N  K  Y  G  I  Y  G  C  H  E  R  L  Q  N  D  F  D  N  A  I  V  Y  K  L  G  E  E  G  N  H  E  S  I  W  S  *  F  S  D  H  *  S  N  *  R  N  G  R  N  Y  *  E  S  L  R  S  F  G  I  Y  T  *  C  L  Y  A  S  T  I  L  Q  S  C  Q  Y  S   : S  S  F  *  D  Y  W  P  *  N  L  G  R  Y  S  R  *  C  *  H  L  C  H  G  N  R  K  W  R  H  S  L  W  C  W  T  I  S  E  I  E  K  S  *  C  Q   : D  I  W  N  R  A  S  *  K  Q  C  I  E  W  W  K  T  R :   S  S  *  N  N  W  Q  W  G  W  I  Q  A  G  Y  P  *  H  G  C  N  G  R  S  S  D   : G  F  K  *  R  I  G  K  H  G  *  G  V  G  I  E  G  R  P  Y   : G  W  Y  I  I  R  S  K  Y  C  S  R  T  *  T  R  Q  Q  T  R  K  *  R  K  T  H  S   : D  N  S  S  K  F  W  R  E  V  L  V  I  C  S  V  *  R  S  Q  E  R  G  T  K  H  A  T  C  I  S  *  L  V  F  N  Y  Y  S  D  S  T  S  E  T  S  T  R  K  K  N  V  C  A  T  F  S  E  I  M  F  M  L  *  I  I  M  E  S  N  L  F  *  T  V  K  K  F  H  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  :  S  E  P  N  L  T  E   : V  T  E  :  H  *  F  N  V  L  F   : *  C  G  A  Y  I  A  V  K  Q  E  M  M  Q  P  T  S  S  I  K  D  R :   P  A  F  A  M  I  N  D  A  E  K  K  G  L  I  T  P  G  K  :  T  T  L  I  E  P  T  S  G  N  M  G  I  S  M  A  F  M  A  A  M  K  G  Y  K  M  I  L  T  M  P  S  Y  T  S  L  E  R  R  V  T  M  R  A  F  G  A  D  L  V  I  T  D  P  T  K  G  M  G  G  T  I  K  K  A  Y  D  L  L  E  S  T  P  N  A  Y  M  L  Q  Q  F  S  N  P  A  N  T  Q  :  V  H  F  E  T  T  G  P  E  I  W  E  D  T  Q  G  N  V  D  I  F  V  M  G  I  G  S  G  G  T  V  S  G  V  G  Q  Y  L  K  S  K  N  P  N  V  K  :  I  Y  G  I  E  P  A  E  S  N  V  L  N  G  G  K  P   : G  P  H  E  I  T  G  N  G  V  G  F  K  P  D  I  L  D  M  D  V  M  E  E  V  L  M  :  V  S  S  E  E  S  V  N  M  A  R  E  L  A  L  K  E  G  L  M  :  V  G  I  S  S  G  A  N  T  V  A  A  L  R  L  A  N  R  P  E  N  K  G  K  L  I  V  :  T  I  H  P  S  F  G  E  R  Y  L  S  S  V  L  Y  E  D  L  R  K  E  A  Q  N  M  Q  P  V  S  V  D  *  C  S  I  I  I  V  I  V  L  V  K  L  V  Q  E  K  K  M  Y  V  L  H  F  L  K  *  C  L  C  F  K  *  *  W  K  V  I  F  S  E  R  L  R  S  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95060" stop="94999"/>
                    <exon start="94874" stop="94817"/>
                    <exon start="94706" stop="94443"/>
                    <exon start="93533" stop="93396"/>
                    <exon start="93299" stop="93248"/>
                    <exon start="93106" stop="93027"/>
                    <exon start="92678" stop="92619"/>
                    <exon start="92456" stop="92376"/>
                    <exon start="92297" stop="92199"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVITDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQVHFETTGPEIWEDTQGNVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGIEPAESNVLNGGKPGPHEITGNGVGFKPDILDMDVMEEVLMVSSEESVNMARELALKEGLMVGISSGANTVAALRLANRPENKGKLIVTIHPSFGERYLSSVLYEDLRKEAQNMQPVSVD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100410" e_stop="100100"/>
            <exon e_start="95108" e_stop="94999"/>
            <exon e_start="94874" e_stop="94817"/>
            <exon e_start="94706" e_stop="94443"/>
            <exon e_start="94307" e_stop="94300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.375"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100410" e_stop="100100" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.931">
            <gDNA_intron_boundary i_start="100099" i_stop="95109" i_length="4991"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95108" e_stop="94999" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="94998" i_stop="94875" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="94817" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="94816" i_stop="94707" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94706" e_stop="94443" e_length="264"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="94442" i_stop="94308" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="0.375">
            <gDNA_exon_boundary e_start="94307" e_stop="94300" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100410" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100395" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100379" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100244" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100243" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100241" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100241" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100236" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94443"/>
              <exon start="94307" stop="94300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100236" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100228" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100224" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100224" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100218" stop="100100"/>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95108" stop="94999"/>
              <exon start="94874" stop="94817"/>
              <exon start="94706" stop="94698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCGGCCAAAAATAAATAGTTATTATACTAACAAAATTCTATTTTTAGGTATAGGAAAAATTCATCTGTATATACCGTAATTTTCCATTATAAAAGGGGTATTTTATCTTTTGAAATTTGAAGAGAGATAGACATTTACAGGCTTCAAATAAATTTCATCAATGGCGTCGTTGGTGAGGAGAAGATTTTATTCGAGTGAAGCATCATTTGTTCAGAGGCTAAGAGATCTGCCAAAGTACCTTCCTGGTACCAAAATCAAAACTCAAGTTTCTCAA : CTCATTGGGAAAACACCATTGGTGTATCTAAACAAAGTGAGTGAAGGATGTGGTGCTTATATTGCTGTTAAACAAGAAATGATGCAACCTACTTCTAGTATCAAAGATAG : ACCAGCATTTGCTATGATCAATGATGCAGAAAAGAAAGGATTAATCACCCCTGGAAAA : ACAACACTAATCGAGCCAACATCAGGGAATATGGGAATAAGTATGGCATTTATGGCTGCCATGAAAGGCTACAAAATGATTTTGACAATGCCATCGTATACAAGCTTGGAGAGGAGGGTAACCATGAGAGCATTTGGAGCTGATTTAGTGATCACTGATCCAACTAAAGGAATGGGAGGAACTATTAAGAAAGCTTACGATCTTTTGGAATCTACACCTAATGCTTATATGCTTCAACAATTCTCCAATCCTGCCAATACTCAA : TGTAGGTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  K  L  G  Q  K  *  I  V  I  I  L  T  K  F  Y  F  *  V  *  E  K  F  I  C  I  Y  R  N  F  P  L  *  K  G  Y  F  I  F  *  N  L  K  R  D  R  H  L  Q  A  S  N  K  F  H  Q  W  R  R  W  *  G  E  D  F  I  R  V  K  H  H  L  F  R  G  *  E  I  C  Q  S  T  F  L  V  P  K  S  K  L  K  F  L  N :   S  L  G  K  H  H  W  C  I  *  T  K  *  V  K  D  V  V  L  I  L  L  L  N  K  K  *  C  N  L  L  L  V  S  K  I   : D  Q  H  L  L  *  S  M  M  Q  K  R  K  D  *  S  P  L  E  K :   Q  H  *  S  S  Q  H  Q  G  I  W  E  *  V  W  H  L  W  L  P  *  K  A  T  K  *  F  *  Q  C  H  R  I  Q  A  W  R  G  G  *  P  *  E  H  L  E  L  I  *  *  S  L  I  Q  L  K  E  W  E  E  L  L  R  K  L  T  I  F  W  N  L  H  L  M  L  I  C  F  N  N  S  P  I  L  P  I  L  N :   V  G  </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  L  S  S  A  K  N  K  *  L  L  Y  *  Q  N  S  I  F  R  Y  R  K  N  S  S  V  Y  T  V  I  F  H  Y  K  R  G  I  L  S  F  E  I  *  R  E  I  D  I  Y  R  L  Q  I  N  F  I  N  G  V  V  G  E  E  K  I  L  F  E  *  S  I  I  C  S  E  A  K  R  S  A  K  V  P  S  W  Y  Q  N  Q  N  S  S  F  S   : T  H  W  E  N  T  I  G  V  S  K  Q  S  E  *  R  M  W  C  L  Y  C  C  *  T  R  N  D  A  T  Y  F  *  Y  Q  R  *  :  T  S  I  C  Y  D  Q  *  C  R  K  E  R  I  N  H  P  W  K   : N  N  T  N  R  A  N  I  R  E  Y  G  N  K  Y  G  I  Y  G  C  H  E  R  L  Q  N  D  F  D  N  A  I  V  Y  K  L  G  E  E  G  N  H  E  S  I  W  S  *  F  S  D  H  *  S  N  *  R  N  G  R  N  Y  *  E  S  L  R  S  F  G  I  Y  T  *  C  L  Y  A  S  T  I  L  Q  S  C  Q  Y  S   : M  *  V </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  *  A  R  P  K  I  N  S  Y  Y  T  N  K  I  L  F  L  G  I  G  K  I  H  L  Y  I  P  *  F  S  I  I  K  G  V  F  Y  L  L  K  F  E  E  R  *  T  F  T  G  F  K  *  I  S  S  M  A  S  L  V  R  R  R  F  Y  S  S  E  A  S  F  V  Q  R  L  R  D  L  P  K  Y  L  P  G  T  K  I  K  T  Q  V  S  Q  :  L  I  G  K  T  P  L  V  Y  L  N  K  V  S  E  G  C  G  A  Y  I  A  V  K  Q  E  M  M  Q  P  T  S  S  I  K  D  R :   P  A  F  A  M  I  N  D  A  E  K  K  G  L  I  T  P  G  K  :  T  T  L  I  E  P  T  S  G  N  M  G  I  S  M  A  F  M  A  A  M  K  G  Y  K  M  I  L  T  M  P  S  Y  T  S  L  E  R  R  V  T  M  R  A  F  G  A  D  L  V  I  T  D  P  T  K  G  M  G  G  T  I  K  K  A  Y  D  L  L  E  S  T  P  N  A  Y  M  L  Q  Q  F  S  N  P  A  N  T  Q  :  C  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100222" stop="100100"/>
                    <exon start="95108" stop="94999"/>
                    <exon start="94874" stop="94817"/>
                    <exon start="94706" stop="94443"/>
                    <exon start="94307" stop="94302"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSMASLVRRRFYSSEASFVQRLRDLPKYLPGTKIKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKGLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVITDPTKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQCR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="103958" PGL_stop="103151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103958" e_stop="103151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="103958" e_stop="103151" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103958" stop="103151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCATGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAAGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTATAATAGGCTCAAGGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGCTGATAGTTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTCTAGGGATGGAGATCATTAGAGACATAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGACATGTCTTCATCTAAGCCTATTGATACCCCCAGTGCAGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAAAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAAATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAAAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTAGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  M  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  S  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  I  I  G  S  R  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  *  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  T  C  L  H  L  S  L  L  I  P  P  V  Q  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  K  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  C  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  *  *  A  Q  G  *  F  I  H  L  S  G  A  L  C  R  *  Y  A  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  S  R  D  G  D  H  *  R  H  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  *  H  V  F  I  *  A  Y  *  Y  P  Q  C  S  Q  Y  P  S  H  C  H  V  R  S  T  V  R  K  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  K  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  *  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  K  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  K  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  V  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  I  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  D  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  K  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  N  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  K  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  S  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103956" stop="103153"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPKQWYKRFDSYMVKLGYTRSSYDCCVYYNRLKDDSFIYLVLYVDDMLIVAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDIERRKLFLSQRSYIQKVLARFDMSSSKPIDTPSAANIHLTAMFAPQSEKEKEYMSRVPYASAVGSLMYAMVCTRPNLAHAVSVVSRFMGQPGKEHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTSYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="104616" PGL_stop="103969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104616" e_stop="103969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="104616" e_stop="103969" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104616" stop="103969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104615" stop="104231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGATAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTGATAGAACCGGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCTATCGGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCCACTTACAGAGAAGTCATTTTAAGTCCTGATTCTGAAAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATTACCAACAGAAGGAGTCAAGTATAAAGCAGGGTTATTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAAAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  *  T  G  G  V  S  S  H  S  E  R  E  R  F  D  R  T  G  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  L  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  H  L  Q  R  S  H  F  K  S  *  F  *  K  M  V  C  C  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  N  R  R  S  Q  V  *  S  R  V  I  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  T  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  K  L  E  E  E  I  Y  M  T </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  I  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  Y  R  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  R  E  V  I  L  S  P  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  L  P  T  E  G  V  K  Y  K  A  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  I  N  R  W  S  F  K  S  F  R  T  R  A  I  *  *  N  R  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  G  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  P  L  T  E  K  S  F  *  V  L  I  L  K  N  G  L  L  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  Y  Q  Q  K  E  S  S  I  K  Q  G  Y  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  Y  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  K  V  G  G  R  D  I  H  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104615" stop="104061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLIEPEEEDQEPQTETDIPESMPSDIYRSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYREVILSPDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGILPTEGVKYKAGLLPEVSTKEREWTTMRSSHQWSDILPSECY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="110929" PGL_stop="114478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110929" e_stop="111163"/>
            <exon e_start="114448" e_stop="114478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.959" e_score="0.987"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="110929" e_stop="111163" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.959">
            <gDNA_intron_boundary i_start="111164" i_stop="114447" i_length="3284"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="114448" e_stop="114478" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110929" stop="111163"/>
              <exon start="114448" stop="114478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGAAAAATAACAAACACCCAATTCACCCATTGACTTTAATTTTCAAGATTGAGAATTTTTTTTTTTGAAATTTGGAGTAAATGGGGTTCAAAAGAGGAGTTTTTTCTTGTTGTTTTTGTGTAGTTTTTGCTGTTGTTTTGCTGAATTCTTGTGTTTTGGTTATTGGAGGTGATATAGTTCATCAAGATAATGTAGCTCCACATCGGCCTGGTTGTAACAACAATTTTGTGCTG : GTAAAAGTTCCAACGTGGGTTAACGGGAATG</gDNA_template>
            <first_frame> K  E  K  *  Q  T  P  N  S  P  I  D  F  N  F  Q  D  *  E  F  F  F  L  K  F  G  V  N  G  V  Q  K  R  S  F  F  L  L  F  L  C  S  F  C  C  C  F  A  E  F  L  C  F  G  Y  W  R  *  Y  S  S  S  R  *  C  S  S  T  S  A  W  L  *  Q  Q  F  C  A   : G  K  S  S  N  V  G  *  R  E   </first_frame>
            <second_frame>  K  K  N  N  K  H  P  I  H  P  L  T  L  I  F  K  I  E  N  F  F  F  *  N  L  E  *  M  G  F  K  R  G  V  F  S  C  C  F  C  V  V  F  A  V  V  L  L  N  S  C  V  L  V  I  G  G  D  I  V  H  Q  D  N  V  A  P  H  R  P  G  C  N  N  N  F  V  L  :  V  K  V  P  T  W  V  N  G  N  </second_frame>
            <third_frame>   R  K  I  T  N  T  Q  F  T  H  *  L  *  F  S  R  L  R  I  F  F  F  E  I  W  S  K  W  G  S  K  E  E  F  F  L  V  V  F  V  *  F  L  L  L  F  C  *  I  L  V  F  W  L  L  E  V  I  *  F  I  K  I  M  *  L  H  I  G  L  V  V  T  T  I  L  C  W :   *  K  F  Q  R  G  L  T  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="114580" PGL_stop="124570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114580" e_stop="114606"/>
            <exon e_start="114721" e_stop="114832"/>
            <exon e_start="115145" e_stop="115264"/>
            <exon e_start="115466" e_stop="115617"/>
            <exon e_start="115743" e_stop="115925"/>
            <exon e_start="116508" e_stop="116542"/>
            <exon e_start="118534" e_stop="118696"/>
            <exon e_start="119755" e_stop="119808"/>
            <exon e_start="120570" e_stop="120662"/>
            <exon e_start="120787" e_stop="120929"/>
            <exon e_start="121519" e_stop="121589"/>
            <exon e_start="122117" e_stop="122200"/>
            <exon e_start="123806" e_stop="124570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.962" e_score="0.991"/>
          <exon-intron don_prob="0.973" acc_prob="0.967" e_score="0.983"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.415" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.702" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.610" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114580" e_stop="114606" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.895">
            <gDNA_intron_boundary i_start="114607" i_stop="114720" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="114721" e_stop="114832" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.962">
            <gDNA_intron_boundary i_start="114833" i_stop="115144" i_length="312"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="115145" e_stop="115264" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.967">
            <gDNA_intron_boundary i_start="115265" i_stop="115465" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115466" e_stop="115617" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115618" i_stop="115742" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115743" e_stop="115925" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.835">
            <gDNA_intron_boundary i_start="115926" i_stop="116507" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116508" e_stop="116542" e_length="35"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="116543" i_stop="118533" i_length="1991"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118534" e_stop="118696" e_length="163"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="118697" i_stop="119754" i_length="1058"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119755" e_stop="119808" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.415">
            <gDNA_intron_boundary i_start="119809" i_stop="120569" i_length="761"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="120570" e_stop="120662" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.750">
            <gDNA_intron_boundary i_start="120663" i_stop="120786" i_length="124"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="120787" e_stop="120929" e_length="143"/>
          </exon>
          <intron i_serial="10" don_prob="0.702" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120930" i_stop="121518" i_length="589"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="121519" e_stop="121589" e_length="71"/>
          </exon>
          <intron i_serial="11" don_prob="0.610" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121590" i_stop="122116" i_length="527"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="122117" e_stop="122200" e_length="84"/>
          </exon>
          <intron i_serial="12" don_prob="0.917" acc_prob="0.997">
            <gDNA_intron_boundary i_start="122201" i_stop="123805" i_length="1605"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="123806" e_stop="124570" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114580" stop="114606"/>
              <exon start="114721" stop="114832"/>
              <exon start="115145" stop="115264"/>
              <exon start="115466" stop="115617"/>
              <exon start="115743" stop="115917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114580" stop="114606"/>
              <exon start="114721" stop="114832"/>
              <exon start="115145" stop="115264"/>
              <exon start="115466" stop="115617"/>
              <exon start="115743" stop="115879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115242" stop="115264"/>
              <exon start="115466" stop="115617"/>
              <exon start="115743" stop="115925"/>
              <exon start="116508" stop="116542"/>
              <exon start="118534" stop="118696"/>
              <exon start="119755" stop="119808"/>
              <exon start="120570" stop="120662"/>
              <exon start="120787" stop="120880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115243" stop="115264"/>
              <exon start="115466" stop="115617"/>
              <exon start="115743" stop="115925"/>
              <exon start="116508" stop="116542"/>
              <exon start="118534" stop="118609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118540" stop="118696"/>
              <exon start="119755" stop="119808"/>
              <exon start="120570" stop="120662"/>
              <exon start="120787" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="124120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118592" stop="118696"/>
              <exon start="119755" stop="119808"/>
              <exon start="120570" stop="120662"/>
              <exon start="120787" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="124019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120626" stop="120662"/>
              <exon start="120787" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="124240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120852" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="124272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120856" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="124311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120857" stop="120929"/>
              <exon start="121519" stop="121589"/>
              <exon start="122117" stop="122200"/>
              <exon start="123806" stop="123996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123937" stop="124550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123962" stop="124570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTGTTGTAGCATGCCTAGGAATAAG : CTCACCAGTGAGGCCATCCTGGTGCACCGAGGTAATTGCAGTTTCACCACAAAAGCAAAAGTTGCAGAAGCTGCTGGTGCTTCAGCAATCATCATTATAAACAATCAAACAG : AGCTCTTCAAGATGGTTTGTGATCCCGGTGAATCTGATGTGGACATCGGTATCCCTGCTGTAATGCTGCCACAAGATGCAGGTACAAGCCTGATAGAGTTTCTCAGGAACAGTTCTACAG : TTTCTGTGCAGATGTACTCTCCGAAACGTCCAGCGGTTGATGTAGCTGAAGTGTTTCTATGGCTTATGTCAGTTGTTACGATTTTATGTGCTTCTTATTGGTCTGCATGGAGTGCTAGAGAAGCCGCAATCGAGCAGGACAAGTTCTTAAAA : GATGGCTCAGATGATTATGGTGGCAAGGAGGTAACTCATTCTGGTGGTGTATTAGACATCAACACAATATCAGCACTTCTGTTCGTGGTGGTTGCATCCTGCTTCTTGATTATGCTTTACAAATTGATGTCCTTCTGGTTTATTGAGGTTCTGGTGGTTCTATTTTGCATCGGCGGTGTAGAG : GGTCTACAAACCTGTTTGGTGACCTTGTTATCATG : TTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTT : GGTATGGCATTGATCATCACTGTTCTTCAGATCATACGAGTTCCCAATCTCAAG : GTGGGAACAGTTCTTCTTACTTGTGCTTTCTTCTATGACATTTTTTGGGTATTTGTTTCCAAATGGGTGTTTCACAAGAGTGTGATGATAGAG : GTTGCACGTGGTTATAAAAGCGGAGAAGAAGGAATTCCCATGTTACTAAAAATCCCGCGAATATGTGATCCCTGGGGTGGCTACAGCATCATTGGGTTTGGCGACATAATTTTACCAGGATTACTAGTAGCATTTTCATTAAG : ATATGACTGGCTGTGCAAGAAGAGCCTTCGAGCCGGTTATTTTCTATGGACTATGACTGCTTATGGTTTAG : GTTTGTTTGCAACATATGTGGCTCTGAACTTGATGGACGGCCATGGTCAACCTGCTTTGCTATATATAGTTCCGTCCACATTAG : GCACATTTTTGATGTTGTCAGCCAAAAGAGGTGAGCTGAAGCATCTATGGACAAGAGGAGAACCATATAGGATTTGCCCGCATATCCAGCTTCAACCGGCCGAGTAATTCGATATCGTACTCTCTCTGTAATCACATATAGCTCTGATTTGTCTACATACAAAGTTAGGGTACATATGTTTAGAAATCTGAAAGAGGTTAGAGTTCTCAAAGTCATAGGTTAAACTTAGGCTTCTCCCCGACCCCGACTGCCCAAATACAATGGCTGTTAATGACTGACTAGCACAAGGTGAAAAATAGAGCATGTAGTTTACCAGTTATGCAGTTGACTAGAGTTGCAGCAAAGTTGAGTTTAACTTCTATACACTGACAAGTAACCGTTTAATGTAAAGTGGAATCAGTAATCTAGAAAATAAGACAGGTTACACCTTTTAACATTGTGAAAATTGTCAACAGCGTCAGTGTATACAAGTTAAATCCAATAACGTTTATACAGCTCTTGCAGTTTACAAGGCCTTCACGCGCAGCTGTAAAATCCCTCATTATATGGCAGCCCGTGTAGAGTACTTTATAGTGAAACAAGTATCATCATATGTTTTTATACAACATATGTAAAAGTGAAGATAATGTATGTGCAAGACCATGGTTAAATTATACATTTCTATGTTTTGTTGTTTTTTCTTCAATTATTTGTCAGTTATGTTTGAGAAATAGAGTTCAGTTTTACTTTTGGCAGCTGATGATACCAATGATTTTGTATCCTTGT</gDNA_template>
            <first_frame> D  C  C  S  M  P  R  N  K  :  L  T  S  E  A  I  L  V  H  R  G  N  C  S  F  T  T  K  A  K  V  A  E  A  A  G  A  S  A  I  I  I  I  N  N  Q  T   : E  L  F  K  M  V  C  D  P  G  E  S  D  V  D  I  G  I  P  A  V  M  L  P  Q  D  A  G  T  S  L  I  E  F  L  R  N  S  S  T   : V  S  V  Q  M  Y  S  P  K  R  P  A  V  D  V  A  E  V  F  L  W  L  M  S  V  V  T  I  L  C  A  S  Y  W  S  A  W  S  A  R  E  A  A  I  E  Q  D  K  F  L  K  :  D  G  S  D  D  Y  G  G  K  E  V  T  H  S  G  G  V  L  D  I  N  T  I  S  A  L  L  F  V  V  V  A  S  C  F  L  I  M  L  Y  K  L  M  S  F  W  F  I  E  V  L  V  V  L  F  C  I  G  G  V  E  :  G  L  Q  T  C  L  V  T  L  L  S  C :   F  R  W  F  E  H  A  Q  E  S  F  L  K  V  P  L  L  G  P  V  S  Y  L  T  L  A  I  S  P  F  C  L  A  F  A  I  M  W  A  V  F  R  H  V  S  F  A  W  I  G  Q  D  I  L  :  G  M  A  L  I  I  T  V  L  Q  I  I  R  V  P  N  L  K  :  V  G  T  V  L  L  T  C  A  F  F  Y  D  I  F  W  V  F  V  S  K  W  V  F  H  K  S  V  M  I  E  :  V  A  R  G  Y  K  S  G  E  E  G  I  P  M  L  L  K  I  P  R  I  C  D  P  W  G  G  Y  S  I  I  G  F  G  D  I  I  L  P  G  L  L  V  A  F  S  L  R :   Y  D  W  L  C  K  K  S  L  R  A  G  Y  F  L  W  T  M  T  A  Y  G  L   : G  L  F  A  T  Y  V  A  L  N  L  M  D  G  H  G  Q  P  A  L  L  Y  I  V  P  S  T  L   : G  T  F  L  M  L  S  A  K  R  G  E  L  K  H  L  W  T  R  G  E  P  Y  R  I  C  P  H  I  Q  L  Q  P  A  E  *  F  D  I  V  L  S  L  *  S  H  I  A  L  I  C  L  H  T  K  L  G  Y  I  C  L  E  I  *  K  R  L  E  F  S  K  S  *  V  K  L  R  L  L  P  D  P  D  C  P  N  T  M  A  V  N  D  *  L  A  Q  G  E  K  *  S  M  *  F  T  S  Y  A  V  D  *  S  C  S  K  V  E  F  N  F  Y  T  L  T  S  N  R  L  M  *  S  G  I  S  N  L  E  N  K  T  G  Y  T  F  *  H  C  E  N  C  Q  Q  R  Q  C  I  Q  V  K  S  N  N  V  Y  T  A  L  A  V  Y  K  A  F  T  R  S  C  K  I  P  H  Y  M  A  A  R  V  E  Y  F  I  V  K  Q  V  S  S  Y  V  F  I  Q  H  M  *  K  *  R  *  C  M  C  K  T  M  V  K  L  Y  I  S  M  F  C  C  F  F  F  N  Y  L  S  V  M  F  E  K  *  S  S  V  L  L  L  A  A  D  D  T  N  D  F  V  S  L  </first_frame>
            <second_frame>  I  V  V  A  C  L  G  I  S :   S  P  V  R  P  S  W  C  T  E  V  I  A  V  S  P  Q  K  Q  K  L  Q  K  L  L  V  L  Q  Q  S  S  L  *  T  I  K  Q  :  S  S  S  R  W  F  V  I  P  V  N  L  M  W  T  S  V  S  L  L  *  C  C  H  K  M  Q  V  Q  A  *  *  S  F  S  G  T  V  L  Q  :  F  L  C  R  C  T  L  R  N  V  Q  R  L  M  *  L  K  C  F  Y  G  L  C  Q  L  L  R  F  Y  V  L  L  I  G  L  H  G  V  L  E  K  P  Q  S  S  R  T  S  S  *  K :   M  A  Q  M  I  M  V  A  R  R  *  L  I  L  V  V  Y  *  T  S  T  Q  Y  Q  H  F  C  S  W  W  L  H  P  A  S  *  L  C  F  T  N  *  C  P  S  G  L  L  R  F  W  W  F  Y  F  A  S  A  V  *  R :   V  Y  K  P  V  W  *  P  C  Y  H   : V  S  D  G  L  N  M  L  K  N  H  F  L  K  F  H  F  W  G  P  F  H  I  S  L  W  Q  F  L  L  S  A  *  L  S  L  L  C  G  R  F  S  V  M  S  P  L  L  G  *  V  K  T  Y  L :   V  W  H  *  S  S  L  F  F  R  S  Y  E  F  P  I  S  R :   W  E  Q  F  F  L  L  V  L  S  S  M  T  F  F  G  Y  L  F  P  N  G  C  F  T  R  V  *  *  *  R :   L  H  V  V  I  K  A  E  K  K  E  F  P  C  Y  *  K  S  R  E  Y  V  I  P  G  V  A  T  A  S  L  G  L  A  T  *  F  Y  Q  D  Y  *  *  H  F  H  *   : D  M  T  G  C  A  R  R  A  F  E  P  V  I  F  Y  G  L  *  L  L  M  V  *  :  V  C  L  Q  H  M  W  L  *  T  *  W  T  A  M  V  N  L  L  C  Y  I  *  F  R  P  H  *  :  A  H  F  *  C  C  Q  P  K  E  V  S  *  S  I  Y  G  Q  E  E  N  H  I  G  F  A  R  I  S  S  F  N  R  P  S  N  S  I  S  Y  S  L  C  N  H  I  *  L  *  F  V  Y  I  Q  S  *  G  T  Y  V  *  K  S  E  R  G  *  S  S  Q  S  H  R  L  N  L  G  F  S  P  T  P  T  A  Q  I  Q  W  L  L  M  T  D  *  H  K  V  K  N  R  A  C  S  L  P  V  M  Q  L  T  R  V  A  A  K  L  S  L  T  S  I  H  *  Q  V  T  V  *  C  K  V  E  S  V  I  *  K  I  R  Q  V  T  P  F  N  I  V  K  I  V  N  S  V  S  V  Y  K  L  N  P  I  T  F  I  Q  L  L  Q  F  T  R  P  S  R  A  A  V  K  S  L  I  I  W  Q  P  V  *  S  T  L  *  *  N  K  Y  H  H  M  F  L  Y  N  I  C  K  S  E  D  N  V  C  A  R  P  W  L  N  Y  T  F  L  C  F  V  V  F  S  S  I  I  C  Q  L  C  L  R  N  R  V  Q  F  Y  F  W  Q  L  M  I  P  M  I  L  Y  P  C </second_frame>
            <third_frame>   L  L  *  H  A  *  E  *   : A  H  Q  *  G  H  P  G  A  P  R  *  L  Q  F  H  H  K  S  K  S  C  R  S  C  W  C  F  S  N  H  H  Y  K  Q  S  N  R :   A  L  Q  D  G  L  *  S  R  *  I  *  C  G  H  R  Y  P  C  C  N  A  A  T  R  C  R  Y  K  P  D  R  V  S  Q  E  Q  F  Y  S :   F  C  A  D  V  L  S  E  T  S  S  G  *  C  S  *  S  V  S  M  A  Y  V  S  C  Y  D  F  M  C  F  L  L  V  C  M  E  C  *  R  S  R  N  R  A  G  Q  V  L  K   : R  W  L  R  *  L  W  W  Q  G  G  N  S  F  W  W  C  I  R  H  Q  H  N  I  S  T  S  V  R  G  G  C  I  L  L  L  D  Y  A  L  Q  I  D  V  L  L  V  Y  *  G  S  G  G  S  I  L  H  R  R  C  R   : G  S  T  N  L  F  G  D  L  V  I  M  :  F  Q  M  V  *  T  C  S  R  I  I  S  *  S  S  T  S  G  A  R  F  I  S  H  S  G  N  F  S  F  L  L  S  F  R  Y  Y  V  G  G  F  P  S  C  L  L  C  L  D  R  S  R  H  T   : W  Y  G  I  D  H  H  C  S  S  D  H  T  S  S  Q  S  Q   : G  G  N  S  S  S  Y  L  C  F  L  L  *  H  F  L  G  I  C  F  Q  M  G  V  S  Q  E  C  D  D  R   : G  C  T  W  L  *  K  R  R  R  R  N  S  H  V  T  K  N  P  A  N  M  *  S  L  G  W  L  Q  H  H  W  V  W  R  H  N  F  T  R  I  T  S  S  I  F  I  K  :  I  *  L  A  V  Q  E  E  P  S  S  R  L  F  S  M  D  Y  D  C  L  W  F  R :   F  V  C  N  I  C  G  S  E  L  D  G  R  P  W  S  T  C  F  A  I  Y  S  S  V  H  I  R :   H  I  F  D  V  V  S  Q  K  R  *  A  E  A  S  M  D  K  R  R  T  I  *  D  L  P  A  Y  P  A  S  T  G  R  V  I  R  Y  R  T  L  S  V  I  T  Y  S  S  D  L  S  T  Y  K  V  R  V  H  M  F  R  N  L  K  E  V  R  V  L  K  V  I  G  *  T  *  A  S  P  R  P  R  L  P  K  Y  N  G  C  *  *  L  T  S  T  R  *  K  I  E  H  V  V  Y  Q  L  C  S  *  L  E  L  Q  Q  S  *  V  *  L  L  Y  T  D  K  *  P  F  N  V  K  W  N  Q  *  S  R  K  *  D  R  L  H  L  L  T  L  *  K  L  S  T  A  S  V  Y  T  S  *  I  Q  *  R  L  Y  S  S  C  S  L  Q  G  L  H  A  Q  L  *  N  P  S  L  Y  G  S  P  C  R  V  L  Y  S  E  T  S  I  I  I  C  F  Y  T  T  Y  V  K  V  K  I  M  Y  V  Q  D  H  G  *  I  I  H  F  Y  V  L  L  F  F  L  Q  L  F  V  S  Y  V  *  E  I  E  F  S  F  T  F  G  S  *  *  Y  Q  *  F  C  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114580" stop="114606"/>
                    <exon start="114721" stop="114832"/>
                    <exon start="115145" stop="115264"/>
                    <exon start="115466" stop="115617"/>
                    <exon start="115743" stop="115925"/>
                    <exon start="116508" stop="116542"/>
                    <exon start="118534" stop="118696"/>
                    <exon start="119755" stop="119808"/>
                    <exon start="120570" stop="120662"/>
                    <exon start="120787" stop="120929"/>
                    <exon start="121519" stop="121589"/>
                    <exon start="122117" stop="122200"/>
                    <exon start="123806" stop="123912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DCCSMPRNKLTSEAILVHRGNCSFTTKAKVAEAAGASAIIIINNQTELFKMVCDPGESDVDIGIPAVMLPQDAGTSLIEFLRNSSTVSVQMYSPKRPAVDVAEVFLWLMSVVTILCASYWSAWSAREAAIEQDKFLKDGSDDYGGKEVTHSGGVLDINTISALLFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVTLLSCFRWFEHAQESFLKVPLLGPVSYLTLAISPFCLAFAIMWAVFRHVSFAWIGQDILGMALIITVLQIIRVPNLKVGTVLLTCAFFYDIFWVFVSKWVFHKSVMIEVARGYKSGEEGIPMLLKIPRICDPWGGYSIIGFGDIILPGLLVAFSLRYDWLCKKSLRAGYFLWTMTAYGLGLFATYVALNLMDGHGQPALLYIVPSTLGTFLMLSAKRGELKHLWTRGEPYRICPHIQLQPAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="118147" e_stop="118718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118147" e_stop="118718" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118147" stop="118718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCTATTTCTCATCAGGCTAAACATTTTAGTTTGATTTCTTCCCACTTCTCATGTTTGTTAGGGCTAGCATTTCAGGATAGAACAGTAAAGTTACATCTGGATTCTTCATCCCATTGATTTGAGGAAACTATGGCTTCTTTTTATCGAGCACAGAACAATGATTAATATCCTTTTTTTATCCTTAGTTGAACTTTTCCTTATCTTTTCACGATGGTGCTCTAAGAGTTCGTCATCATTCGTAATAATGTTTGAGATGATGATTGTGACTAGGTTTCTGTTATTTTATTCTTGAGGCAAGGTGCAATTTCATTTTAATTACCATAATGTCATTTCATTAGTTGGTTCTCAGACATGTCAGATGTGGCTAACAGTCATTATTTGTAGTTTCAGATGGTTTGAACATGCTCAAGAATCATTTCTTAAAGTTCCACTTCTGGGGCCCGTTTCATATCTCACTCTGGCAATTTCTCCTTTCTGCTTAGCTTTCGCTATTATGTGGGCGGTTTTCCGTCATGTCTCCTTTGCTTGGATAGGTCAAGACATACTTGTAAGAACTATTATCATATTAC</gDNA_template>
            <first_frame> F  P  I  S  H  Q  A  K  H  F  S  L  I  S  S  H  F  S  C  L  L  G  L  A  F  Q  D  R  T  V  K  L  H  L  D  S  S  S  H  *  F  E  E  T  M  A  S  F  Y  R  A  Q  N  N  D  *  Y  P  F  F  I  L  S  *  T  F  P  Y  L  F  T  M  V  L  *  E  F  V  I  I  R  N  N  V  *  D  D  D  C  D  *  V  S  V  I  L  F  L  R  Q  G  A  I  S  F  *  L  P  *  C  H  F  I  S  W  F  S  D  M  S  D  V  A  N  S  H  Y  L  *  F  Q  M  V  *  T  C  S  R  I  I  S  *  S  S  T  S  G  A  R  F  I  S  H  S  G  N  F  S  F  L  L  S  F  R  Y  Y  V  G  G  F  P  S  C  L  L  C  L  D  R  S  R  H  T  C  K  N  Y  Y  H  I   </first_frame>
            <second_frame>  F  L  F  L  I  R  L  N  I  L  V  *  F  L  P  T  S  H  V  C  *  G  *  H  F  R  I  E  Q  *  S  Y  I  W  I  L  H  P  I  D  L  R  K  L  W  L  L  F  I  E  H  R  T  M  I  N  I  L  F  L  S  L  V  E  L  F  L  I  F  S  R  W  C  S  K  S  S  S  S  F  V  I  M  F  E  M  M  I  V  T  R  F  L  L  F  Y  S  *  G  K  V  Q  F  H  F  N  Y  H  N  V  I  S  L  V  G  S  Q  T  C  Q  M  W  L  T  V  I  I  C  S  F  R  W  F  E  H  A  Q  E  S  F  L  K  V  P  L  L  G  P  V  S  Y  L  T  L  A  I  S  P  F  C  L  A  F  A  I  M  W  A  V  F  R  H  V  S  F  A  W  I  G  Q  D  I  L  V  R  T  I  I  I  L  </second_frame>
            <third_frame>   S  Y  F  S  S  G  *  T  F  *  F  D  F  F  P  L  L  M  F  V  R  A  S  I  S  G  *  N  S  K  V  T  S  G  F  F  I  P  L  I  *  G  N  Y  G  F  F  L  S  S  T  E  Q  *  L  I  S  F  F  Y  P  *  L  N  F  S  L  S  F  H  D  G  A  L  R  V  R  H  H  S  *  *  C  L  R  *  *  L  *  L  G  F  C  Y  F  I  L  E  A  R  C  N  F  I  L  I  T  I  M  S  F  H  *  L  V  L  R  H  V  R  C  G  *  Q  S  L  F  V  V  S  D  G  L  N  M  L  K  N  H  F  L  K  F  H  F  W  G  P  F  H  I  S  L  W  Q  F  L  L  S  A  *  L  S  L  L  C  G  R  F  S  V  M  S  P  L  L  G  *  V  K  T  Y  L  *  E  L  L  S  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118442" stop="118717"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKVQFHFNYHNVISLVGSQTCQMWLTVIICSFRWFEHAQESFLKVPLLGPVSYLTLAISPFCLAFAIMWAVFRHVSFAWIGQDILVRTIIIL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118238" stop="118441"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYIWILHPIDLRKLWLLFIEHRTMINILFLSLVELFLIFSRWCSKSSSSFVIMFEMMIVTRFLLFYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="129846" PGL_stop="125598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129846" e_stop="129684"/>
            <exon e_start="127854" e_stop="127027"/>
            <exon e_start="125997" e_stop="125744"/>
            <exon e_start="125627" e_stop="125598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.953" e_score="0.997"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="0.862"/>
          <exon-only e_score="0.767"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129846" e_stop="129684" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.948">
            <gDNA_intron_boundary i_start="129683" i_stop="127855" i_length="1829"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="127854" e_stop="127027" e_length="828"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.953">
            <gDNA_intron_boundary i_start="127026" i_stop="125998" i_length="1029"/>
          </intron>
          <exon e_serial="3" e_score="0.862">
            <gDNA_exon_boundary e_start="125997" e_stop="125744" e_length="254"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="125743" i_stop="125628" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="0.767">
            <gDNA_exon_boundary e_start="125627" e_stop="125598" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129846" stop="129684"/>
              <exon start="127854" stop="127209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129845" stop="129684"/>
              <exon start="127854" stop="127514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129734" stop="129684"/>
              <exon start="127854" stop="127213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129734" stop="129684"/>
              <exon start="127854" stop="127439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127250" stop="127027"/>
              <exon start="125997" stop="125744"/>
              <exon start="125627" stop="125598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415351" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTTTTGAAACAATTACCGGCTATCCCGGTAGCCTCTTCTTCGCCCAAAAATTGTTTCACTATAATCATTCTCTTCGCTCGTTTCTCGAGACAGTTTCTAAATTTTTTCTCACAGTAGCAGCATAGTCTATCTTCATCTCTATCTGCTTATTATCACCTCT : AAAATGGAAAATAATGAGGAAGGGGAGGAAACAGCTCCTTCTAGAAATGAGTGGGAAGTCGTATCGCTCATACAGTCGGCATATGCTGCTGCCCCTAATTCAAGACAGGTTGATCTTGTTGACGATAGTAGTGCAGAGTTTGTAGCTGAAACTTCTGATCCAATGATTATGTCGGGGCACTTTGGCTTTCCACCGAATCAACATGAGAATGCGCCATTGCAACCATCTAATGATGAGATTCTGAATGAGCAGGGAAGTGAAGATGCTACTCCTGAATTTGTTGCTGACAAAGGGGTTGATTCAGATGCAGATGAAGTGAGTACAAAAACTAAAGGATTGAGCACAACGGAATTTCTCGGAGATCAAATGTTTGATGAAAAGGTTAGCCTTTTATCCTTAAGTGGTGCAGAATTTGAAGAAGATGTAGTCTTGCAGGGGTCAAGTTTTGTGGACAAAGAGCAGAATTTCTTTAGTTCTACTACGTTTAGTTCTTTCAATAGTGAAGAACCCATGAATGTGTCAGCATCAACAGAGGAAAGTAATATGCTTGCAGAACCAGTTGAACTCGTTCACCGGGTTATTGATTCTGGCATATCTAATTTGCCAAAGGCTAAAGCTGAAGATAATGATGATGCAGAAAATCTTCCTTGTCAAGCCTGGTGGAAAAGGCGAGCTGTTTCACTTCTTGCCCACGCAAAAGATGCCAACACATTCTGGTCCATTTTCATTGCTGCAGCTGTTATGGGCCTCGTGGTTATTGGTCAGAGATGGCGCCTAGAAAGGTGGCAGATATTGCAAATGAAGTGGCAGTTTGGAGGCCACGATGAG : ATAATGAACAGGGCATTTGTTAGTCCCATATCCCGATTGAAAGAAGTGATAATTGGGAGTGGTCGTCGTGGTTCCTTTATTCGAGGGAATGCTTCAACACAACGGTAAGATGATGATGACGAAAACGAACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTTCTTTCCAGTGTACCTAATATTATTTATGTTTAAACGATTGGATATGTTGTTATGATGGAGTTTAATCGTGGAATCTACAAGCAAGCATTTGAG : GTTGAATGAAAAAACAAAAAAAAAAAAACT</gDNA_template>
            <first_frame> V  L  L  K  Q  L  P  A  I  P  V  A  S  S  S  P  K  N  C  F  T  I  I  I  L  F  A  R  F  S  R  Q  F  L  N  F  F  S  Q  *  Q  H  S  L  S  S  S  L  S  A  Y  Y  H  L   : *  N  G  K  *  *  G  R  G  G  N  S  S  F  *  K  *  V  G  S  R  I  A  H  T  V  G  I  C  C  C  P  *  F  K  T  G  *  S  C  *  R  *  *  C  R  V  C  S  *  N  F  *  S  N  D  Y  V  G  A  L  W  L  S  T  E  S  T  *  E  C  A  I  A  T  I  *  *  *  D  S  E  *  A  G  K  *  R  C  Y  S  *  I  C  C  *  Q  R  G  *  F  R  C  R  *  S  E  Y  K  N  *  R  I  E  H  N  G  I  S  R  R  S  N  V  *  *  K  G  *  P  F  I  L  K  W  C  R  I  *  R  R  C  S  L  A  G  V  K  F  C  G  Q  R  A  E  F  L  *  F  Y  Y  V  *  F  F  Q  *  *  R  T  H  E  C  V  S  I  N  R  G  K  *  Y  A  C  R  T  S  *  T  R  S  P  G  Y  *  F  W  H  I  *  F  A  K  G  *  S  *  R  *  *  *  C  R  K  S  S  L  S  S  L  V  E  K  A  S  C  F  T  S  C  P  R  K  R  C  Q  H  I  L  V  H  F  H  C  C  S  C  Y  G  P  R  G  Y  W  S  E  M  A  P  R  K  V  A  D  I  A  N  E  V  A  V  W  R  P  R  *   : D  N  E  Q  G  I  C  *  S  H  I  P  I  E  R  S  D  N  W  E  W  S  S  W  F  L  Y  S  R  E  C  F  N  T  T  V  R  *  *  *  R  K  R  T  C  L  C  A  S  H  S  L  G  F  L  S  S  V  P  N  I  I  Y  V  *  T  I  G  Y  V  V  M  M  E  F  N  R  G  I  Y  K  Q  A  F  E  :  V  E  *  K  N  K  K  K  K  T </first_frame>
            <second_frame>  F  F  *  N  N  Y  R  L  S  R  *  P  L  L  R  P  K  I  V  S  L  *  S  F  S  S  L  V  S  R  D  S  F  *  I  F  S  H  S  S  S  I  V  Y  L  H  L  Y  L  L  I  I  T  S  :  K  M  E  N  N  E  E  G  E  E  T  A  P  S  R  N  E  W  E  V  V  S  L  I  Q  S  A  Y  A  A  A  P  N  S  R  Q  V  D  L  V  D  D  S  S  A  E  F  V  A  E  T  S  D  P  M  I  M  S  G  H  F  G  F  P  P  N  Q  H  E  N  A  P  L  Q  P  S  N  D  E  I  L  N  E  Q  G  S  E  D  A  T  P  E  F  V  A  D  K  G  V  D  S  D  A  D  E  V  S  T  K  T  K  G  L  S  T  T  E  F  L  G  D  Q  M  F  D  E  K  V  S  L  L  S  L  S  G  A  E  F  E  E  D  V  V  L  Q  G  S  S  F  V  D  K  E  Q  N  F  F  S  S  T  T  F  S  S  F  N  S  E  E  P  M  N  V  S  A  S  T  E  E  S  N  M  L  A  E  P  V  E  L  V  H  R  V  I  D  S  G  I  S  N  L  P  K  A  K  A  E  D  N  D  D  A  E  N  L  P  C  Q  A  W  W  K  R  R  A  V  S  L  L  A  H  A  K  D  A  N  T  F  W  S  I  F  I  A  A  A  V  M  G  L  V  V  I  G  Q  R  W  R  L  E  R  W  Q  I  L  Q  M  K  W  Q  F  G  G  H  D  E  :  I  M  N  R  A  F  V  S  P  I  S  R  L  K  E  V  I  I  G  S  G  R  R  G  S  F  I  R  G  N  A  S  T  Q  R  *  D  D  D  D  E  N  E  L  V  C  V  Q  V  I  A  *  V  F  F  P  V  Y  L  I  L  F  M  F  K  R  L  D  M  L  L  *  W  S  L  I  V  E  S  T  S  K  H  L  R :   L  N  E  K  T  K  K  K  K   </second_frame>
            <third_frame>   S  F  E  T  I  T  G  Y  P  G  S  L  F  F  A  Q  K  L  F  H  Y  N  H  S  L  R  S  F  L  E  T  V  S  K  F  F  L  T  V  A  A  *  S  I  F  I  S  I  C  L  L  S  P  L :   K  W  K  I  M  R  K  G  R  K  Q  L  L  L  E  M  S  G  K  S  Y  R  S  Y  S  R  H  M  L  L  P  L  I  Q  D  R  L  I  L  L  T  I  V  V  Q  S  L  *  L  K  L  L  I  Q  *  L  C  R  G  T  L  A  F  H  R  I  N  M  R  M  R  H  C  N  H  L  M  M  R  F  *  M  S  R  E  V  K  M  L  L  L  N  L  L  L  T  K  G  L  I  Q  M  Q  M  K  *  V  Q  K  L  K  D  *  A  Q  R  N  F  S  E  I  K  C  L  M  K  R  L  A  F  Y  P  *  V  V  Q  N  L  K  K  M  *  S  C  R  G  Q  V  L  W  T  K  S  R  I  S  L  V  L  L  R  L  V  L  S  I  V  K  N  P  *  M  C  Q  H  Q  Q  R  K  V  I  C  L  Q  N  Q  L  N  S  F  T  G  L  L  I  L  A  Y  L  I  C  Q  R  L  K  L  K  I  M  M  M  Q  K  I  F  L  V  K  P  G  G  K  G  E  L  F  H  F  L  P  T  Q  K  M  P  T  H  S  G  P  F  S  L  L  Q  L  L  W  A  S  W  L  L  V  R  D  G  A  *  K  G  G  R  Y  C  K  *  S  G  S  L  E  A  T  M  R :   *  *  T  G  H  L  L  V  P  Y  P  D  *  K  K  *  *  L  G  V  V  V  V  V  P  L  F  E  G  M  L  Q  H  N  G  K  M  M  M  T  K  T  N  L  S  V  C  K  S  *  L  R  F  S  F  Q  C  T  *  Y  Y  L  C  L  N  D  W  I  C  C  Y  D  G  V  *  S  W  N  L  Q  A  S  I  *   : G  *  M  K  K  Q  K  K  K  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129743" stop="129684"/>
                    <exon start="127854" stop="127027"/>
                    <exon start="125997" stop="125890"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSHSSSIVYLHLYLLIITSKMENNEEGEETAPSRNEWEVVSLIQSAYAAAPNSRQVDLVDDSSAEFVAETSDPMIMSGHFGFPPNQHENAPLQPSNDEILNEQGSEDATPEFVADKGVDSDADEVSTKTKGLSTTEFLGDQMFDEKVSLLSLSGAEFEEDVVLQGSSFVDKEQNFFSSTTFSSFNSEEPMNVSASTEESNMLAEPVELVHRVIDSGISNLPKAKAEDNDDAENLPCQAWWKRRAVSLLAHAKDANTFWSIFIAAAVMGLVVIGQRWRLERWQILQMKWQFGGHDEIMNRAFVSPISRLKEVIIGSGRRGSFIRGNASTQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="125869" e_stop="125601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="125869" e_stop="125601" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125869" stop="125601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTGTCTGTGTGCAAGTCATAGCTTAGGTTTTCTTTCCAGTGTACCTAATATTATTTATGTTTAAACGATTGGATATGTTGTTATGATGGAGTTTAATCGTGGAATCTACAAGCAAGCATTTGAGGTAACATTACTGGTAAAAAAAAACAAGTAAATTTTGTCATTAGCAAGTGCTTTATCCCCAATGTGAGACTTCTTGGTGAATCCGAATTTACCTGAACTTTGAAGTGGATATCGGACGTTGAATGAAAAAACAAAAAAAAAAAA</gDNA_template>
            <first_frame> T  C  L  C  A  S  H  S  L  G  F  L  S  S  V  P  N  I  I  Y  V  *  T  I  G  Y  V  V  M  M  E  F  N  R  G  I  Y  K  Q  A  F  E  V  T  L  L  V  K  K  N  K  *  I  L  S  L  A  S  A  L  S  P  M  *  D  F  L  V  N  P  N  L  P  E  L  *  S  G  Y  R  T  L  N  E  K  T  K  K  K   </first_frame>
            <second_frame>  L  V  C  V  Q  V  I  A  *  V  F  F  P  V  Y  L  I  L  F  M  F  K  R  L  D  M  L  L  *  W  S  L  I  V  E  S  T  S  K  H  L  R  *  H  Y  W  *  K  K  T  S  K  F  C  H  *  Q  V  L  Y  P  Q  C  E  T  S  W  *  I  R  I  Y  L  N  F  E  V  D  I  G  R  *  M  K  K  Q  K  K  K  </second_frame>
            <third_frame>   L  S  V  C  K  S  *  L  R  F  S  F  Q  C  T  *  Y  Y  L  C  L  N  D  W  I  C  C  Y  D  G  V  *  S  W  N  L  Q  A  S  I  *  G  N  I  T  G  K  K  K  Q  V  N  F  V  I  S  K  C  F  I  P  N  V  R  L  L  G  E  S  E  F  T  *  T  L  K  W  I  S  D  V  E  *  K  N  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="134816" PGL_stop="137501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134816" e_stop="134954"/>
            <exon e_start="135030" e_stop="135110"/>
            <exon e_start="135730" e_stop="135819"/>
            <exon e_start="135923" e_stop="136089"/>
            <exon e_start="136684" e_stop="136753"/>
            <exon e_start="136949" e_stop="137028"/>
            <exon e_start="137147" e_stop="137209"/>
            <exon e_start="137311" e_stop="137387"/>
            <exon e_start="137464" e_stop="137501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.896" e_score="0.975"/>
          <exon-intron don_prob="0.979" acc_prob="0.979" e_score="0.984"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="0.896"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134816" e_stop="134954" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="134955" i_stop="135029" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="135030" e_stop="135110" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.903">
            <gDNA_intron_boundary i_start="135111" i_stop="135729" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="135730" e_stop="135819" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.834" acc_prob="0.997">
            <gDNA_intron_boundary i_start="135820" i_stop="135922" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="135923" e_stop="136089" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136090" i_stop="136683" i_length="594"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="136684" e_stop="136753" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136754" i_stop="136948" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="136949" e_stop="137028" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.896">
            <gDNA_intron_boundary i_start="137029" i_stop="137146" i_length="118"/>
          </intron>
          <exon e_serial="7" e_score="0.984">
            <gDNA_exon_boundary e_start="137147" e_stop="137209" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.979">
            <gDNA_intron_boundary i_start="137210" i_stop="137310" i_length="101"/>
          </intron>
          <exon e_serial="8" e_score="0.896">
            <gDNA_exon_boundary e_start="137311" e_stop="137387" e_length="77"/>
          </exon>
          <intron i_serial="8" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137388" i_stop="137463" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.921">
            <gDNA_exon_boundary e_start="137464" e_stop="137501" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134816" stop="134954"/>
              <exon start="135030" stop="135110"/>
              <exon start="135730" stop="135765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134866" stop="134954"/>
              <exon start="135030" stop="135090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134871" stop="134954"/>
              <exon start="135030" stop="135110"/>
              <exon start="135730" stop="135819"/>
              <exon start="135923" stop="136006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134873" stop="134954"/>
              <exon start="135030" stop="135110"/>
              <exon start="135730" stop="135819"/>
              <exon start="135923" stop="136089"/>
              <exon start="136684" stop="136730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134873" stop="134954"/>
              <exon start="135030" stop="135110"/>
              <exon start="135730" stop="135819"/>
              <exon start="135923" stop="135935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134883" stop="134954"/>
              <exon start="135030" stop="135110"/>
              <exon start="135730" stop="135819"/>
              <exon start="135923" stop="136089"/>
              <exon start="136684" stop="136753"/>
              <exon start="136949" stop="137028"/>
              <exon start="137147" stop="137209"/>
              <exon start="137311" stop="137387"/>
              <exon start="137464" stop="137501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTGGCGGGTATTGAACCCTCCATTTTACATCCTGAGAGCCAATAACTGGCACAAAAATGGGGGATTTGTATGCCTTGGATTTTGATGGAGTTCTCTGCGATAGTTGTGGAGAAAGCTCTCTTTCTGCTCTTAAG : GCTGCTAAAGTGAGATGGCCTAGTCTTTTCAATGGGGTGGACTCTTCTTTGGAAGATTGGATTGTAGATCAGATGCATGTG : GTTAGACCTGTAGTGGAAACTGGATATGAAAATCTCTTACTTGTGAGGTTGCTCCTGGAGTCGATAATCCCTTCTATTCGCAAGTCTTCG : GTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAG : GTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAG : AGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTATGGTCTCGGCACTGG : ACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCGGAACACCAGGGTCTGAAACTACA : CTTTGTGGAAGACCGGCTTGCTACTTTAAAGAATGTGATTAAAGAGTCCGAGTTGGATGGATGGAACTTGTATCTAG : GGGACTGGGGTTACAATACTCAAAAGGAGAGGGAGGAA</gDNA_template>
            <first_frame> F  D  W  R  V  L  N  P  P  F  Y  I  L  R  A  N  N  W  H  K  N  G  G  F  V  C  L  G  F  *  W  S  S  L  R  *  L  W  R  K  L  S  F  C  S  *   : G  C  *  S  E  M  A  *  S  F  Q  W  G  G  L  F  F  G  R  L  D  C  R  S  D  A  C   : G  *  T  C  S  G  N  W  I  *  K  S  L  T  C  E  V  A  P  G  V  D  N  P  F  Y  S  Q  V  F   : G  C  R  G  T  N  S  *  G  N  T  *  E  L  V  K  D  *  T  H  Y  N  G  R  M  E  *  R  Q  R  L  P  Y  R  S  F  R  *  G  *  R  *  M  D  G  Q  *  F  G  Y  L  D  R  C  K  Q  :  V  L  S  W  S  S  *  C  T  E  I  C  K  F  K  A  L  Y  S  H  Y  E  A   : E  P  L  C  R  C  I  T  *  R  D  C  W  D  N  Y  S  S  *  K  D  L  W  S  R  H  W  :  T  *  S  K  S  A  *  A  T  S  G  N  A  G  T  P  G  S  E  T  T  :  L  C  G  R  P  A  C  Y  F  K  E  C  D  *  R  V  R  V  G  W  M  E  L  V  S  R :   G  L  G  L  Q  Y  S  K  G  E  G  G  </first_frame>
            <second_frame>  L  I  G  G  Y  *  T  L  H  F  T  S  *  E  P  I  T  G  T  K  M  G  D  L  Y  A  L  D  F  D  G  V  L  C  D  S  C  G  E  S  S  L  S  A  L  K  :  A  A  K  V  R  W  P  S  L  F  N  G  V  D  S  S  L  E  D  W  I  V  D  Q  M  H  V  :  V  R  P  V  V  E  T  G  Y  E  N  L  L  L  V  R  L  L  L  E  S  I  I  P  S  I  R  K  S  S  :  V  A  E  G  L  T  V  E  G  I  L  E  N  W  S  K  I  K  P  I  I  M  A  E  W  N  E  D  R  D  F  L  I  D  L  F  G  K  V  R  D  E  W  M  D  N  D  L  A  T  W  I  G  A  N  R :   F  Y  P  G  V  P  D  A  L  K  F  A  S  S  K  L  Y  I  V  T  T  K  Q  :  S  R  F  A  D  A  L  L  K  G  I  A  G  I  T  I  P  A  E  R  I  Y  G  L  G  T  G :   P  K  V  K  V  L  K  Q  L  Q  E  M  P  E  H  Q  G  L  K  L  H :   F  V  E  D  R  L  A  T  L  K  N  V  I  K  E  S  E  L  D  G  W  N  L  Y  L   : G  D  W  G  Y  N  T  Q  K  E  R  E  E </second_frame>
            <third_frame>   *  L  A  G  I  E  P  S  I  L  H  P  E  S  Q  *  L  A  Q  K  W  G  I  C  M  P  W  I  L  M  E  F  S  A  I  V  V  E  K  A  L  F  L  L  L  R :   L  L  K  *  D  G  L  V  F  S  M  G  W  T  L  L  W  K  I  G  L  *  I  R  C  M  W :   L  D  L  *  W  K  L  D  M  K  I  S  Y  L  *  G  C  S  W  S  R  *  S  L  L  F  A  S  L  R :   L  Q  R  D  *  Q  L  R  E  Y  L  R  T  G  Q  R  L  N  P  L  *  W  Q  N  G  M  K  T  E  T  S  L  *  I  F  S  V  R  L  E  M  N  G  W  T  M  I  W  L  L  G  *  V  Q  T   : G  F  I  L  E  F  L  M  H  *  N  L  Q  V  Q  S  F  I  *  S  L  R  S  R :   A  A  L  Q  M  H  Y  L  K  G  L  L  G  *  L  F  Q  L  K  G  S  M  V  S  A  L   : D  L  K  *  K  C  L  S  N  F  R  K  C  R  N  T  R  V  *  N  Y   : T  L  W  K  T  G  L  L  L  *  R  M  *  L  K  S  P  S  W  M  D  G  T  C  I  *  :  G  T  G  V  T  I  L  K  R  R  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134856" stop="134954"/>
                    <exon start="135030" stop="135110"/>
                    <exon start="135730" stop="135819"/>
                    <exon start="135923" stop="136089"/>
                    <exon start="136684" stop="136753"/>
                    <exon start="136949" stop="137028"/>
                    <exon start="137147" stop="137209"/>
                    <exon start="137311" stop="137387"/>
                    <exon start="137464" stop="137501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPITGTKMGDLYALDFDGVLCDSCGESSLSALKAAKVRWPSLFNGVDSSLEDWIVDQMHVVRPVVETGYENLLLVRLLLESIIPSIRKSSVAEGLTVEGILENWSKIKPIIMAEWNEDRDFLIDLFGKVRDEWMDNDLATWIGANRFYPGVPDALKFASSKLYIVTTKQSRFADALLKGIAGITIPAERIYGLGTGPKVKVLKQLQEMPEHQGLKLHFVEDRLATLKNVIKESELDGWNLYLGDWGYNTQKEREE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="135922" e_stop="136089"/>
            <exon e_start="136684" e_stop="136753"/>
            <exon e_start="136949" e_stop="137028"/>
            <exon e_start="137147" e_stop="137209"/>
            <exon e_start="137311" e_stop="137387"/>
            <exon e_start="137464" e_stop="137494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135922" e_stop="136089" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136090" i_stop="136683" i_length="594"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136684" e_stop="136753" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.992">
            <gDNA_intron_boundary i_start="136754" i_stop="136948" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136949" e_stop="137028" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.896">
            <gDNA_intron_boundary i_start="137029" i_stop="137146" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137147" e_stop="137209" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.979">
            <gDNA_intron_boundary i_start="137210" i_stop="137310" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="137311" e_stop="137387" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137388" i_stop="137463" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="137464" e_stop="137494" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135922" stop="136089"/>
              <exon start="136684" stop="136753"/>
              <exon start="136949" stop="137028"/>
              <exon start="137147" stop="137209"/>
              <exon start="137311" stop="137387"/>
              <exon start="137464" stop="137494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGCAGAGGGACTAACAGTTGAGGGAATACTTGAGAACTGGTCAAAGATTAAACCCATTATAATGGCAGAATGGAATGAAGACAGAGACTTCCTTATAGATCTTTTCGGTAAGGTTAGAGATGAATGGATGGACAATGATTTGGCTACTTGGATAGGTGCAAACAG : GTTTTATCCTGGAGTTCCTGATGCACTGAAATTTGCAAGTTCAAAGCTTTATATAGTCACTACGAAGCAG : AGCCGCTTTGCAGATGCATTACTTAAAGGGATTGCTGGGATAACTATTCCAGCTGAAAGGATCTATGGTCTCGGCACTGG : ACCTAAAGTAAAAGTGCTTAAGCAACTTCAGGAAATGCCGGAACACCAGGGTCTGAAACTACA : CTTTGTGGAAGACCGGCTTGCTACTTTAAAGAATGTGATTAAAGAGTCCGAGTTGGATGGATGGAACTTGTATCTAG : GGGACTGGGGTTACAATACTCAAAAGGAGAG</gDNA_template>
            <first_frame> G  C  R  G  T  N  S  *  G  N  T  *  E  L  V  K  D  *  T  H  Y  N  G  R  M  E  *  R  Q  R  L  P  Y  R  S  F  R  *  G  *  R  *  M  D  G  Q  *  F  G  Y  L  D  R  C  K  Q  :  V  L  S  W  S  S  *  C  T  E  I  C  K  F  K  A  L  Y  S  H  Y  E  A   : E  P  L  C  R  C  I  T  *  R  D  C  W  D  N  Y  S  S  *  K  D  L  W  S  R  H  W  :  T  *  S  K  S  A  *  A  T  S  G  N  A  G  T  P  G  S  E  T  T  :  L  C  G  R  P  A  C  Y  F  K  E  C  D  *  R  V  R  V  G  W  M  E  L  V  S  R :   G  L  G  L  Q  Y  S  K  G  E </first_frame>
            <second_frame>  V  A  E  G  L  T  V  E  G  I  L  E  N  W  S  K  I  K  P  I  I  M  A  E  W  N  E  D  R  D  F  L  I  D  L  F  G  K  V  R  D  E  W  M  D  N  D  L  A  T  W  I  G  A  N  R :   F  Y  P  G  V  P  D  A  L  K  F  A  S  S  K  L  Y  I  V  T  T  K  Q  :  S  R  F  A  D  A  L  L  K  G  I  A  G  I  T  I  P  A  E  R  I  Y  G  L  G  T  G :   P  K  V  K  V  L  K  Q  L  Q  E  M  P  E  H  Q  G  L  K  L  H :   F  V  E  D  R  L  A  T  L  K  N  V  I  K  E  S  E  L  D  G  W  N  L  Y  L   : G  D  W  G  Y  N  T  Q  K  E   </second_frame>
            <third_frame>   L  Q  R  D  *  Q  L  R  E  Y  L  R  T  G  Q  R  L  N  P  L  *  W  Q  N  G  M  K  T  E  T  S  L  *  I  F  S  V  R  L  E  M  N  G  W  T  M  I  W  L  L  G  *  V  Q  T   : G  F  I  L  E  F  L  M  H  *  N  L  Q  V  Q  S  F  I  *  S  L  R  S  R :   A  A  L  Q  M  H  Y  L  K  G  L  L  G  *  L  F  Q  L  K  G  S  M  V  S  A  L   : D  L  K  *  K  C  L  S  N  F  R  K  C  R  N  T  R  V  *  N  Y   : T  L  W  K  T  G  L  L  L  *  R  M  *  L  K  S  P  S  W  M  D  G  T  C  I  *  :  G  T  G  V  T  I  L  K  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135923" stop="136089"/>
                    <exon start="136684" stop="136753"/>
                    <exon start="136949" stop="137028"/>
                    <exon start="137147" stop="137209"/>
                    <exon start="137311" stop="137387"/>
                    <exon start="137464" stop="137492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAEGLTVEGILENWSKIKPIIMAEWNEDRDFLIDLFGKVRDEWMDNDLATWIGANRFYPGVPDALKFASSKLYIVTTKQSRFADALLKGIAGITIPAERIYGLGTGPKVKVLKQLQEMPEHQGLKLHFVEDRLATLKNVIKESELDGWNLYLGDWGYNTQKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="139934" PGL_stop="137890"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="139934" e_stop="139517"/>
            <exon e_start="138745" e_stop="138617"/>
            <exon e_start="138198" e_stop="137890"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="139934" e_stop="139517" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="139516" i_stop="138746" i_length="771"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="138745" e_stop="138617" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="138616" i_stop="138199" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="138198" e_stop="137890" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="139934" stop="139517"/>
              <exon start="138745" stop="138617"/>
              <exon start="138198" stop="137890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTAATTTCTACTTTCTAACATATACTATGTACACTCTAAAAAAAACCATAAACAAATCTCCTAACTGAAATTAAATTATTGATACAATGAATAAGCAAATTCAAAATGCATCAACAATAATTATCTGCTCGTTGTTGCTATTGATTAATACTGAAATTGGTAATTTTTACCGATTTGTCGATGGAGCACAACGGACGATTCAAGTTTCCGATGATCTAGACGACGTTGTTGACGATGAAGAGGACGAGGCTTGGAGAGAATGGGGAAGGAAGAAATCGACTAGCTCCGATTTCGATCCGCCGCCGACGGATTTTGATACGATGAGTCCGTCGGAAATTCAAGCGGAAATGATGAAGCGGCAGCTGGGTCCGGTTTTTGGGTTTGTTAAACTCCGACTTGGAACTCGTCGGACTCAG : GAGAAAGTTACTGAAATAGCGATGAGATGGACCAAACTAGCAAGAACTGGAGCAATCGAGGCAAAGTTCATGAGTGTTGATGTGAGCACAATCATGTTTACTATGGAGAAAGGTCAAGACTCTATCGAG : TTGAAAGAGTTTTTGTTGGACCAACCAGAAGCATATGAGATTAAAGTAGGGGACCAACTATTTCGAAGACCAGGAGATCCTCCTTTTGAAGAAGTATTTGAGAAGATTCAGAGGGAGAAAAGCAAAGTCGATCATACCAGCTCAAAGAAGAATAGGCATCATGAGTTGTAATCACCACAAAAAAACTCTTGACAACTAATTTCGATCACCTATAACAAGTATTATCAGGAGGGCAGGTGTAAATGGCTGGCATCTTACATGTTCTTTTTTCGACACACACTTGACACTCTGTGCTTACAGGCTATGCAT</gDNA_template>
            <first_frame> A  *  F  L  L  S  N  I  Y  Y  V  H  S  K  K  N  H  K  Q  I  S  *  L  K  L  N  Y  *  Y  N  E  *  A  N  S  K  C  I  N  N  N  Y  L  L  V  V  A  I  D  *  Y  *  N  W  *  F  L  P  I  C  R  W  S  T  T  D  D  S  S  F  R  *  S  R  R  R  C  *  R  *  R  G  R  G  L  E  R  M  G  K  E  E  I  D  *  L  R  F  R  S  A  A  D  G  F  *  Y  D  E  S  V  G  N  S  S  G  N  D  E  A  A  A  G  S  G  F  W  V  C  *  T  P  T  W  N  S  S  D  S   : G  E  S  Y  *  N  S  D  E  M  D  Q  T  S  K  N  W  S  N  R  G  K  V  H  E  C  *  C  E  H  N  H  V  Y  Y  G  E  R  S  R  L  Y  R   : V  E  R  V  F  V  G  P  T  R  S  I  *  D  *  S  R  G  P  T  I  S  K  T  R  R  S  S  F  *  R  S  I  *  E  D  S  E  G  E  K  Q  S  R  S  Y  Q  L  K  E  E  *  A  S  *  V  V  I  T  T  K  K  L  L  T  T  N  F  D  H  L  *  Q  V  L  S  G  G  Q  V  *  M  A  G  I  L  H  V  L  F  S  T  H  T  *  H  S  V  L  T  G  Y  A  </first_frame>
            <second_frame>  L  N  F  Y  F  L  T  Y  T  M  Y  T  L  K  K  T  I  N  K  S  P  N  *  N  *  I  I  D  T  M  N  K  Q  I  Q  N  A  S  T  I  I  I  C  S  L  L  L  L  I  N  T  E  I  G  N  F  Y  R  F  V  D  G  A  Q  R  T  I  Q  V  S  D  D  L  D  D  V  V  D  D  E  E  D  E  A  W  R  E  W  G  R  K  K  S  T  S  S  D  F  D  P  P  P  T  D  F  D  T  M  S  P  S  E  I  Q  A  E  M  M  K  R  Q  L  G  P  V  F  G  F  V  K  L  R  L  G  T  R  R  T  Q  :  E  K  V  T  E  I  A  M  R  W  T  K  L  A  R  T  G  A  I  E  A  K  F  M  S  V  D  V  S  T  I  M  F  T  M  E  K  G  Q  D  S  I  E  :  L  K  E  F  L  L  D  Q  P  E  A  Y  E  I  K  V  G  D  Q  L  F  R  R  P  G  D  P  P  F  E  E  V  F  E  K  I  Q  R  E  K  S  K  V  D  H  T  S  S  K  K  N  R  H  H  E  L  *  S  P  Q  K  N  S  *  Q  L  I  S  I  T  Y  N  K  Y  Y  Q  E  G  R  C  K  W  L  A  S  Y  M  F  F  F  R  H  T  L  D  T  L  C  L  Q  A  M  H </second_frame>
            <third_frame>   L  I  S  T  F  *  H  I  L  C  T  L  *  K  K  P  *  T  N  L  L  T  E  I  K  L  L  I  Q  *  I  S  K  F  K  M  H  Q  Q  *  L  S  A  R  C  C  Y  *  L  I  L  K  L  V  I  F  T  D  L  S  M  E  H  N  G  R  F  K  F  P  M  I  *  T  T  L  L  T  M  K  R  T  R  L  G  E  N  G  E  G  R  N  R  L  A  P  I  S  I  R  R  R  R  I  L  I  R  *  V  R  R  K  F  K  R  K  *  *  S  G  S  W  V  R  F  L  G  L  L  N  S  D  L  E  L  V  G  L  R :   R  K  L  L  K  *  R  *  D  G  P  N  *  Q  E  L  E  Q  S  R  Q  S  S  *  V  L  M  *  A  Q  S  C  L  L  W  R  K  V  K  T  L  S  S :   *  K  S  F  C  W  T  N  Q  K  H  M  R  L  K  *  G  T  N  Y  F  E  D  Q  E  I  L  L  L  K  K  Y  L  R  R  F  R  G  R  K  A  K  S  I  I  P  A  Q  R  R  I  G  I  M  S  C  N  H  H  K  K  T  L  D  N  *  F  R  S  P  I  T  S  I  I  R  R  A  G  V  N  G  W  H  L  T  C  S  F  F  D  T  H  L  T  L  C  A  Y  R  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139858" stop="139517"/>
                    <exon start="138745" stop="138617"/>
                    <exon start="138198" stop="138028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIDTMNKQIQNASTIIICSLLLLINTEIGNFYRFVDGAQRTIQVSDDLDDVVDDEEDEAWREWGRKKSTSSDFDPPPTDFDTMSPSEIQAEMMKRQLGPVFGFVKLRLGTRRTQEKVTEIAMRWTKLARTGAIEAKFMSVDVSTIMFTMEKGQDSIELKEFLLDQPEAYEIKVGDQLFRRPGDPPFEEVFEKIQREKSKVDHTSSKKNRHHEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="167414" PGL_stop="166689"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="167414" e_stop="166689"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="167414" e_stop="166689" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="167414" stop="166930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="166988" stop="166689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCCACCCCCGAATTACCACCGCTCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGAAAAGCCGGTATCTTTAAACCCAAAATATTTCAGGCTACCATACTACCAAATACACCCCTTCTCGATAGTGAACCAACAACCTACTCTGTTGCCTCCAAAAATGCTTATTGGCGTCATGCTATGGATGACGATTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGATACAAGGCTCGTTTGGTTGCTAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGCGCAACAATTGGCTCATCAATTAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGATGCAACTACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTAAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  P  P  P  N  Y  H  R  S  C  H  P  P  I  L  I  P  C  *  P  V  E  K  P  V  S  L  N  P  K  Y  F  R  L  P  Y  Y  Q  I  H  P  F  S  I  V  N  Q  Q  P  T  L  L  P  P  K  M  L  I  G  V  M  L  W  M  T  I  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  D  T  R  L  V  W  L  L  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  L  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  K  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  K  S  R  Y  L  *  T  Q  N  I  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  Q  K  C  L  L  A  S  C  Y  G  *  R  F  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  I  Q  G  S  F  G  C  *  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  V  V  R  N  N  W  L  I  N  *  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  M  Q  L  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  L  P  P  L  V  P  P  P  N  T  H  P  M  L  T  R  G  K  A  G  I  F  K  P  K  I  F  Q  A  T  I  L  P  N  T  P  L  L  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  D  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  C  N  Y  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="167412" stop="166804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPATPELPPLVPPPNTHPMLTRGKAGIFKPKIFQATILPNTPLLDSEPTTYSVASKNAYWRHAMDDDFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKATIRSMGLITPRHSVLLFGRKPFAWYCHSSCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="176567" PGL_stop="176852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="176567" e_stop="176852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="176567" e_stop="176852" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="176567" stop="176852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGAGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTTGTGCTATTACTTGGGTCAAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGATGCATCTGAGCCAGCCACTGAGGTTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  E  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  C  A  I  T  W  V  K  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  D  A  S  E  P  A  T  E  V  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  R  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  M  H  L  S  Q  P  L  R  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  L  C  Y  Y  L  G  Q  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  C  I  *  A  S  H  *  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="176616" stop="176852"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGRRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKMHLSQPLRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="176926" PGL_stop="177479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="176926" e_stop="177479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="176926" e_stop="177479" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="176926" stop="177479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGCACAGAATAAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGACAGATACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATAGATGCCTCATTGGGAATAGGCACGTTTCCTCGTCTGACTACAGGGCCGATAATGACAAATGATCAGCGTAAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTACGATTTTCTGGTCGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAAAGCCAAAATGTGGTGGCGGTCACATGTGGAGTGTCAATCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  S  K  R  R  G  G  W  G  K  *  T  S  T  E  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  T  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  R  C  L  I  G  N  R  H  V  S  S  S  D  Y  R  A  D  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  R  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  S  Q  N  V  V  A  V  T  C  G  V  S  I  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  A  Q  N  K  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  I  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  I  D  A  S  L  G  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  R  K  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  K  A  K  M  W  W  R  S  H  V  E  C  Q  S  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  H  R  I  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  D  R  Y  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  *  M  P  H  W  E  *  A  R  F  L  V  *  L  Q  G  R  *  *  Q  M  I  S  V  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  T  I  F  W  S  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  K  P  K  C  G  G  G  H  M  W  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="176927" stop="177478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEDGENEQAQNKELPPQPTPEMINQVLAYLSGLSDQGQIPPVFSAPAPQAPEVQHAATVAPRIDASLGIGTFPRLTTGPIMTNDQRKLFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGKAKMWWRSHVECQSTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="178577" PGL_stop="178247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178577" e_stop="178247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="178577" e_stop="178247" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178577" stop="178247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAGAGCCAAGTCATACCCATAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATGTCATGCAATTCACAATGTAAATTAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAATAATAAAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  Y  N  P  R  L  Q  N  L  E  R  A  K  S  Y  P  *  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  H  A  I  H  N  V  N  *  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  K  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  I  T  I  Q  D  C  K  I  W  R  E  P  S  H  T  H  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  V  M  Q  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  *  *  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  I  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  *  I  G  M  S  C  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  K  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="178277" PGL_stop="178937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178277" e_stop="178937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="178277" e_stop="178937" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178277" stop="178937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCTACATTTTCATATGTATCTTCCGCATTTGCTAATGGTCTTAATTTACATTGTGAATTGCATGACATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTATGGGTATGACTTGGCTCTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCTTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTTCGTATCGTCTCCTTTCTTCATGCTAAGAGAACAGTTAGTAAGGGTTGTTTATCTTTCTTGGCACGCCTCCGGGATGATACTACCCAAGTACCTTCAATTGAGTCGGTTTCGATAGTCCACGAGTTTTTAGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTCTGCATCGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCACTGAGTTAAGGGAGTTAAAGGCTCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  A  F  A  N  G  L  N  L  H  C  E  L  H  D  M  P  I  H  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  M  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  H  A  K  R  T  V  S  K  G  C  L  S  F  L  A  R  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  H  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  T  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </first_frame>
            <second_frame>  L  T  L  A  L  H  F  H  M  Y  L  P  H  L  L  M  V  L  I  Y  I  V  N  C  M  T  C  L  F  M  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  L  W  V  *  L  G  S  L  Q  I  L  Q  S  W  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  L  *  C  G  R  V  T  T  L  P  I  R  F  V  S  S  P  F  F  M  L  R  E  Q  L  V  R  V  V  Y  L  S  W  H  A  S  G  M  I  L  P  K  Y  L  Q  L  S  R  F  R  *  S  T  S  F  *  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  S  A  S  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  L  S  *  G  S  *  R  L  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  P  L  G </second_frame>
            <third_frame>   *  P  W  L  Y  I  F  I  C  I  F  R  I  C  *  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  Y  G  Y  D  L  A  L  S  K  F  C  N  L  G  L  *  C  *  N  C  D  V  S  Q  A  W  D  R  S  F  S  V  G  G  *  L  H  F  Q  S  G  S  Y  R  L  L  S  S  C  *  E  N  S  *  *  G  L  F  I  F  L  G  T  P  P  G  *  Y  Y  P  S  T  F  N  *  V  G  F  D  S  P  R  V  F  R  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  H  R  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  H  *  V  K  G  V  K  G  S  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178277" stop="178936"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSAFANGLNLHCELHDMPIHVSTPVGESVIVEKVYRSCLVTFVGSNTHVDLVILEMVDFDVIMGMTWLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLHAKRTVSKGCLSFLARLRDDTTQVPSIESVSIVHEFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPTELRELKAQLQELLSKGFIRPSASPW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="179496" PGL_stop="178819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="179496" e_stop="178819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="179496" e_stop="178819" e_length="678"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="179496" stop="178819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACCCCATCCTTAGAAACCACATGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACAATTCTCAAGTTCTCCTCATGTTCCTTCTTGCTCTTGAGTATACCAATATATCATCAATAAATATGATCACAAAGAGATCCAGATATGGCTTAAAAATCTCATTCATCAAGCTCATGAAAGTAGCAGGGGCATTCGTAAGCCCAAAAGACATTACTAAGAACTCATAATGCCCATACTTGGTCCGAAAAGCAGTCTTGGGCACATCTGCTGCCCGTATTTTTAATTGATGATAACCAGATCTCAAGTCGATTTTTGAGAAGGTACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGAGGAAGAGGATACTTGTTCTTAACCGTTACCTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAGCTTCCATCCTTCTTCTTCACAAACAAAACAGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCCCTTAACTCAGTGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</gDNA_template>
            <first_frame> V  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  P  I  L  R  N  H  M  P  Q  E  G  H  C  I  *  P  K  L  T  L  G  E  F  G  I  K  L  F  L  P  Q  H  F  Q  Y  N  S  Q  V  L  L  M  F  L  L  A  L  E  Y  T  N  I  S  S  I  N  M  I  T  K  R  S  R  Y  G  L  K  I  S  F  I  K  L  M  K  V  A  G  A  F  V  S  P  K  D  I  T  K  N  S  *  C  P  Y  L  V  R  K  A  V  L  G  T  S  A  A  R  I  F  N  *  *  *  P  D  L  K  S  I  F  E  K  V  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  T  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  *  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  E  M  G  R  V </first_frame>
            <second_frame>  S  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  F  S  S  C  S  F  L  L  L  S  I  P  I  Y  H  Q  *  I  *  S  Q  R  D  P  D  M  A  *  K  S  H  S  S  S  S  *  K  *  Q  G  H  S  *  A  Q  K  T  L  L  R  T  H  N  A  H  T  W  S  E  K  Q  S  W  A  H  L  L  P  V  F  L  I  D  D  N  Q  I  S  S  R  F  L  R  R  Y  K  H  L  V  T  D  R  T  N  H  Q  C  E  E  E  D  T  C  S  *  P  L  P  Y  S  V  V  C  S  L  C  T  S  E  S  F  H  P  S  S  S  Q  T  K  Q  E  H  P  K  G  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  E  P  L  T  P  L  T  Q  W  E  P  F  Y  K  G  V  *  K  W  G  E   </second_frame>
            <third_frame>   L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  P  H  P  *  K  P  H  A  P  R  R  T  L  H  L  A  K  T  H  T  W  R  I  W  H  K  A  F  S  P  S  T  F  P  I  Q  F  S  S  S  P  H  V  P  S  C  S  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  L  I  H  Q  A  H  E  S  S  R  G  I  R  K  P  K  R  H  Y  *  E  L  I  M  P  I  L  G  P  K  S  S  L  G  H  I  C  C  P  Y  F  *  L  M  I  T  R  S  Q  V  D  F  *  E  G  T  S  T  L  *  L  I  E  Q  I  I  N  A  R  K  R  I  L  V  L  N  R  Y  L  I  Q  L  S  V  V  Y  A  H  P  K  A  S  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  S  L  *  L  P  *  L  S  G  S  H  S  I  R  G  Y  R  N  G  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="179403" stop="179176"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLGEFGIKLFLPQHFQYNSQVLLMFLLALEYTNISSINMITKRSRYGLKISFIKLMKVAGAFVSPKDITKNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="181048" PGL_stop="180872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="181048" e_stop="180872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="181048" e_stop="180872" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="181048" stop="180872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATACAATGCCTCGAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTATGAGAACTCTGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCATTTGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  I  C  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  T  M  P  R  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  M  R  T  L  L  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  Q  C  L  E  W  G  H  I  N  T  *  V  I  A  I  V  V  *  E  L  C  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  H  L  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="206900" PGL_stop="204929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="206817" e_stop="206315"/>
            <exon e_start="205012" e_stop="204929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="206817" e_stop="206315" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="206314" i_stop="205013" i_length="1302"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="205012" e_stop="204929" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206817" stop="206315"/>
              <exon start="205012" stop="204930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206793" stop="206315"/>
              <exon start="205012" stop="204929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206761" stop="206315"/>
              <exon start="205012" stop="204935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTTACCTTAGTGATT : GTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  S  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  F  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  D  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  E  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  L  P  *  *  L :   S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </first_frame>
            <second_frame>  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  L  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  Q  T  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  Y  L  S  D   : C  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </second_frame>
            <third_frame>   E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  F  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  *  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  I  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  T  L  V  I  :  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="206817" stop="206320"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKFNGNCFNCGKHGHRANECRGSKKDKKKKDQANLAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPAFTDEKLFMANSAVAKVEGTDKVLLKMTSDKVVTLNRVSYVPELRKNLVSIPVLTKNGFECVFVSDKVVVSKNDMYVGKGLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="206900" e_stop="206331"/>
            <exon e_start="205011" e_stop="204930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.518" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="206900" e_stop="206331" e_length="570"/>
          </exon>
          <intron i_serial="1" don_prob="0.518" acc_prob="0.000">
            <gDNA_intron_boundary i_start="206330" i_stop="205012" i_length="1319"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="205011" e_stop="204930" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="206900" stop="206331"/>
              <exon start="205011" stop="204930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATTTGGTCCAAAAAGCAATCCTCCTAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAG : TCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> N  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  L  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  Q  T  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  :  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  F  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  *  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  I  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  S :   L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  A  F  G  P  K  S  N  P  P  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  S  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  F  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  D  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  E  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K   : V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="206898" stop="206331"/>
                    <exon start="205011" stop="204932"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVNFVEEDSTKLKKRKKAFGPKSNPPKKFNGNCFNCGKHGHRANECRGSKKDKKKKDQANLAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPAFTDEKLFMANSAVAKVEGTDKVLLKMTSDKVVTLNRVSYVPELRKNLVSIPVLTKNGFECVFVSDKVVVSKNDMYVGKVFFFFFFFFFFFFFFFFFFFFFFFFFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="208180" PGL_stop="206953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="208162" e_stop="206953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="208162" e_stop="206953" e_length="1210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="208162" stop="207933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="208028" stop="207336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207883" stop="207275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207772" stop="207043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207772" stop="207329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207738" stop="206968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207559" stop="206953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  M  L  F  L  F  L  Y  I  N  F  I  N  T  N  Y  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  *  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  T  K  R  T  *  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  F  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  *  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  C  C  F  C  F  C  T  L  T  S  *  I  Q  I  I  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  R  D  *  N  L  Y  G  F  L  L  Y  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S  *  S  P  C  *  R  I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  I  Q  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  R  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  V  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  T  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  V  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  Y  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="207577" stop="207206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKPQKNSGML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="207260" stop="206955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQCVQQCKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVVAIIEKLPPLWKDFKNYLKYKRKEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="208180" e_stop="207983"/>
            <exon e_start="207574" e_stop="206953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.695" acc_prob="0.996" e_score="0.879"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="208180" e_stop="207983" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.695" acc_prob="0.996">
            <gDNA_intron_boundary i_start="207982" i_stop="207575" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="207574" e_stop="206953" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="208180" stop="207983"/>
              <exon start="207574" stop="207080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="207559" stop="206953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  :  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R :   K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S  *  S  P  C  *  R  I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  I  Q  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *   : E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  V  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  Y  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="208057" stop="207983"/>
                    <exon start="207574" stop="207206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFFSSLKLKKFEKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKPQKNSGML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="217304" PGL_stop="240174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="217331" e_stop="217426"/>
            <exon e_start="218098" e_stop="218207"/>
            <exon e_start="221522" e_stop="221656"/>
            <exon e_start="223145" e_stop="223300"/>
            <exon e_start="225155" e_stop="225238"/>
            <exon e_start="226868" e_stop="226914"/>
            <exon e_start="227142" e_stop="227215"/>
            <exon e_start="227880" e_stop="227938"/>
            <exon e_start="228241" e_stop="228300"/>
            <exon e_start="235760" e_stop="235840"/>
            <exon e_start="236055" e_stop="236081"/>
            <exon e_start="236260" e_stop="236271"/>
            <exon e_start="237289" e_stop="237306"/>
            <exon e_start="238889" e_stop="238893"/>
            <exon e_start="239005" e_stop="239026"/>
            <exon e_start="239096" e_stop="239117"/>
            <exon e_start="239170" e_stop="239180"/>
            <exon e_start="240011" e_stop="240174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.319" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.553" acc_prob="0.949" e_score="0.667"/>
          <exon-intron don_prob="0.274" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.900" acc_prob="0.569" e_score="0.600"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="217331" e_stop="217426" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.905">
            <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="218098" e_stop="218207" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="218208" i_stop="221521" i_length="3314"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="221522" e_stop="221656" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="221657" i_stop="223144" i_length="1488"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="223145" e_stop="223300" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="225155" e_stop="225238" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.836" acc_prob="1.000">
            <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="226868" e_stop="226914" e_length="47"/>
          </exon>
          <intron i_serial="6" don_prob="0.984" acc_prob="0.319">
            <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="227142" e_stop="227215" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="227880" e_stop="227938" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="228241" e_stop="228300" e_length="60"/>
          </exon>
          <intron i_serial="9" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="235760" e_stop="235840" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="235841" i_stop="236054" i_length="214"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="236055" e_stop="236081" e_length="27"/>
          </exon>
          <intron i_serial="11" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="236082" i_stop="236259" i_length="178"/>
          </intron>
          <exon e_serial="12" e_score="0.667">
            <gDNA_exon_boundary e_start="236260" e_stop="236271" e_length="12"/>
          </exon>
          <intron i_serial="12" don_prob="0.553" acc_prob="0.949">
            <gDNA_intron_boundary i_start="236272" i_stop="237288" i_length="1017"/>
          </intron>
          <exon e_serial="13" e_score="0.556">
            <gDNA_exon_boundary e_start="237289" e_stop="237306" e_length="18"/>
          </exon>
          <intron i_serial="13" don_prob="0.274" acc_prob="0.000">
            <gDNA_intron_boundary i_start="237307" i_stop="238888" i_length="1582"/>
          </intron>
          <exon e_serial="14" e_score="0.600">
            <gDNA_exon_boundary e_start="238889" e_stop="238893" e_length="5"/>
          </exon>
          <intron i_serial="14" don_prob="0.900" acc_prob="0.569">
            <gDNA_intron_boundary i_start="238894" i_stop="239004" i_length="111"/>
          </intron>
          <exon e_serial="15" e_score="0.545">
            <gDNA_exon_boundary e_start="239005" e_stop="239026" e_length="22"/>
          </exon>
          <intron i_serial="15" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69"/>
          </intron>
          <exon e_serial="16" e_score="0.682">
            <gDNA_exon_boundary e_start="239096" e_stop="239117" e_length="22"/>
          </exon>
          <intron i_serial="16" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52"/>
          </intron>
          <exon e_serial="17" e_score="0.727">
            <gDNA_exon_boundary e_start="239170" e_stop="239180" e_length="11"/>
          </exon>
          <intron i_serial="17" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830"/>
          </intron>
          <exon e_serial="18" e_score="0.957">
            <gDNA_exon_boundary e_start="240011" e_stop="240174" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217331" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217346" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217346" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217349" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217356" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217357" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217357" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="218135" stop="218207"/>
              <exon start="221522" stop="221656"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="227148" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235760" stop="235840"/>
              <exon start="236055" stop="236081"/>
              <exon start="236260" stop="236271"/>
              <exon start="237289" stop="237306"/>
              <exon start="238889" stop="238893"/>
              <exon start="239005" stop="239026"/>
              <exon start="239096" stop="239117"/>
              <exon start="239170" stop="239180"/>
              <exon start="240011" stop="240174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGTGACAGTGAGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG : GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG : GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT : GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG : GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG : GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA : ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG : ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG : GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CATCTGGAAGGAAAAAAAGTTGATAAT : ACCATCTTTCCT : GGCTGCAACATGCTTAAG : CGATA : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</gDNA_template>
            <first_frame> E  S  D  S  E  S  I  E  S  S  I  L  K  L  *  E  W  P  M  T  P  K  V  R  L  P  R  F  V  *  I  S  :  E  E  G  S  F  A  L  H  W  I  P  S  H  N  V  S  Q  T  R  C  S  L  L  C  L  V  V  V  I  L  S  A  R  S  Q  R  R :   D  T  Y  S  L  T  G  T  E  S  T  S  T  I  S  L  I  G  *  G  M  V  *  F  H  P  *  K  I  L  N  M  L  S  F  C  G  R  R  S  T  I  N  S  L :   V  *  *  M  E  L  N  L  P  *  V  R  G  R  R  M  R  S  W  V  L  N  *  H  A  L  T  L  S  N  A  Y  S  L  R  E  S  D  F  G  E  L  I  F  L  V  L  I  F  R  S  W :   T  C  R  L  W  I  S  A  M  H  V  *  K  Q  C  S  S  H  V  P  I  F  N  V  Q  N  S  G :   M  L  M  P  K  L  P  F  F  T  M  P  H  C  A   : N  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y  R :   Q  L  I  L  P  M  P  T  S  K  E  L  I  L  K  V  Q  I  *  R :   V  R  S  *  P  M  Q  I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   I  W  K  E  K  K  L  I  I :   P  S  F  L :   A  A  T  C  L  S :   D   : T  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  N  V  L  T  C  Q  I  </first_frame>
            <second_frame>  R  V  T  V  S  P  L  N  H  Q  S  S  N  S  E  N  G  L  *  L  R  K  F  V  F  H  G  S  S  E  Y  R :   R  K  E  V  L  H  Y  T  G  Y  P  H  T  T  *  A  R  L  D  A  R  C  Y  V  *  W  S  S  Y  Y  L  P  G  V  R  E   : G  T  H  I  R  *  Q  G  R  K  A  L  P  P  Y  P  *  L  V  E  G  W  C  N  S  T  P  E  R  F  *  I  C  S  A  S  A  G  G  G  V  L  S  T  P   : W  S  S  R  W  N  *  I  C  P  K  *  E  E  G  G  *  G  V  G  Y  *  I  D  T  H  *  H  Y  Q  M  H  T  V  *  E  S  Q  I  S  G  N  *  S  F  W  S  *  S  F  E  V   : G  L  V  V  C  G  F  Q  L  C  M  S  K  N  S  V  L  L  T  C  Q  S  S  M  C  K  I  Q   : G  C  *  C  R  S  F  H  F  S  Q  C  H  I  A  R  :  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P  T   : D  S  *  S  Y  Q  C  Q  P  R  R  S  *  S  *  R  C  K  S  E   : G  C  E  V  N  Q  C  K  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  S  G  R  K  K  S  *  *   : Y  H  L  S   : W  L  Q  H  A  *   : A  I  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K  M  F  *  L  V  K  S </second_frame>
            <third_frame>   E  *  Q  *  V  H  *  I  I  N  P  Q  T  L  R  M  A  Y  D  S  E  S  S  S  S  T  V  R  L  N  I   : G  G  R  K  F  C  T  T  L  D  T  L  T  Q  R  E  P  D  S  M  L  A  A  M  F  S  G  R  H  T  I  C  Q  E  S  E  K  :  G  H  I  F  V  D  R  D  G  K  H  F  H  H  I  L  N  W  L  R  D  G  V  I  P  P  L  K  D  S  E  Y  A  Q  L  L  R  E  A  E  Y  Y  Q  L  L  :  G  L  V  D  G  I  K  S  A  L  S  K  R  K  E  D  E  E  L  G  T  E  L  T  R  I  D  I  I  K  C  I  Q  S  E  R  V  R  F  R  G  I  N  L  S  G  L  D  L  S  K  L  :  D  L  S  F  V  D  F  S  Y  A  C  L  K  T  V  F  F  S  R  A  N  L  Q  C  A  K  F  R  :  D  V  D  A  E  A  S  I  F  H  N  A  T  L  R  E :   C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  Q  :  T  A  D  L  T  N  A  N  L  E  G  A  N  L  E  G  A  N  L  K  :  G  A  K  L  T  N  A  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  H  L  E  G  K  K  V  D  N  :  T  I  F  P  :  G  C  N  M  L  K  :  R  Y :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *  K  C  F  N  L  S  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="217354" stop="217426"/>
                    <exon start="218098" stop="218207"/>
                    <exon start="221522" stop="221656"/>
                    <exon start="223145" stop="223300"/>
                    <exon start="225155" stop="225238"/>
                    <exon start="226868" stop="226914"/>
                    <exon start="227142" stop="227215"/>
                    <exon start="227880" stop="227938"/>
                    <exon start="228241" stop="228300"/>
                    <exon start="235760" stop="235840"/>
                    <exon start="236055" stop="236081"/>
                    <exon start="236260" stop="236271"/>
                    <exon start="237289" stop="237306"/>
                    <exon start="238889" stop="238893"/>
                    <exon start="239005" stop="239026"/>
                    <exon start="239096" stop="239117"/>
                    <exon start="239170" stop="239180"/>
                    <exon start="240011" stop="240028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IINPQTLRMAYDSESSSSTVRLNIGGRKFCTTLDTLTQREPDSMLAAMFSGRHTICQESEKGHIFVDRDGKHFHHILNWLRDGVIPPLKDSEYAQLLREAEYYQLLGLVDGIKSALSKRKEDEELGTELTRIDIIKCIQSERVRFRGINLSGLDLSKLDLSFVDFSYACLKTVFFSRANLQCAKFRDVDAEASIFHNATLRECEFTGANLRGAVLAGANLQSANLQDACLIGCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLTNANLKGANLQRAYLRHVNLRDTHLEGKKVDNTIFPGCNMLKRYPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="217304" e_stop="217426"/>
            <exon e_start="218098" e_stop="218207"/>
            <exon e_start="225155" e_stop="225238"/>
            <exon e_start="227037" e_stop="227215"/>
            <exon e_start="227880" e_stop="227938"/>
            <exon e_start="228241" e_stop="228300"/>
            <exon e_start="235781" e_stop="235840"/>
            <exon e_start="236527" e_stop="236531"/>
            <exon e_start="239005" e_stop="239026"/>
            <exon e_start="239096" e_stop="239117"/>
            <exon e_start="239170" e_stop="239180"/>
            <exon e_start="240011" e_stop="240153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.905" e_score="0.862"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="0.975"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.868" e_score="0.617"/>
          <exon-intron don_prob="0.000" acc_prob="0.569" e_score="0.800"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.862">
            <gDNA_exon_boundary e_start="217304" e_stop="217426" e_length="123"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.905">
            <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="218098" e_stop="218207" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="225155" e_stop="225238" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="225239" i_stop="227036" i_length="1798"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="227037" e_stop="227215" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="227880" e_stop="227938" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="228241" e_stop="228300" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="228301" i_stop="235780" i_length="7480"/>
          </intron>
          <exon e_serial="7" e_score="0.617">
            <gDNA_exon_boundary e_start="235781" e_stop="235840" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.868">
            <gDNA_intron_boundary i_start="235841" i_stop="236526" i_length="686"/>
          </intron>
          <exon e_serial="8" e_score="0.800">
            <gDNA_exon_boundary e_start="236527" e_stop="236531" e_length="5"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="236532" i_stop="239004" i_length="2473"/>
          </intron>
          <exon e_serial="9" e_score="0.545">
            <gDNA_exon_boundary e_start="239005" e_stop="239026" e_length="22"/>
          </exon>
          <intron i_serial="9" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="0.682">
            <gDNA_exon_boundary e_start="239096" e_stop="239117" e_length="22"/>
          </exon>
          <intron i_serial="10" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52"/>
          </intron>
          <exon e_serial="11" e_score="0.727">
            <gDNA_exon_boundary e_start="239170" e_stop="239180" e_length="11"/>
          </exon>
          <intron i_serial="11" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830"/>
          </intron>
          <exon e_serial="12" e_score="0.930">
            <gDNA_exon_boundary e_start="240011" e_stop="240153" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217304" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="225155" stop="225238"/>
              <exon start="227037" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217304" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="225155" stop="225238"/>
              <exon start="227037" stop="227156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="227055" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235781" stop="235840"/>
              <exon start="236527" stop="236531"/>
              <exon start="239005" stop="239026"/>
              <exon start="239096" stop="239117"/>
              <exon start="239170" stop="239180"/>
              <exon start="240011" stop="240153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431055" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGAGTAGAATCTATTTTTTGCTTAGGAGAGTGACAGTGAGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG : GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG : GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG : GCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG : ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG : AATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CTCAG : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAA</gDNA_template>
            <first_frame> E  E  *  N  L  F  F  A  *  E  S  D  S  E  S  I  E  S  S  I  L  K  L  *  E  W  P  M  T  P  K  V  R  L  P  R  F  V  *  I  S  :  E  E  G  S  F  A  L  H  W  I  P  S  H  N  V  S  Q  T  R  C  S  L  L  C  L  V  V  V  I  L  S  A  R  S  Q  R  R :   T  C  R  L  W  I  S  A  M  H  V  *  K  Q  C  S  S  H  V  P  I  F  N  V  Q  N  S  G :   L  Y  M  F  V  W  I  K  I  *  A  H  N  I  I  F  K  P  I  F  T  V  K  L  Q  P  *  *  F  H  F  A  *  G  R  C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  Q  :  T  A  D  L  T  N  A  N  L  E  G  A  N  L  E  G  A  N  L  K  :  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  L  S :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *   </first_frame>
            <second_frame>  R  S  R  I  Y  F  L  L  R  R  V  T  V  S  P  L  N  H  Q  S  S  N  S  E  N  G  L  *  L  R  K  F  V  F  H  G  S  S  E  Y  R :   R  K  E  V  L  H  Y  T  G  Y  P  H  T  T  *  A  R  L  D  A  R  C  Y  V  *  W  S  S  Y  Y  L  P  G  V  R  E   : G  L  V  V  C  G  F  Q  L  C  M  S  K  N  S  V  L  L  T  C  Q  S  S  M  C  K  I  Q   : G  F  T  C  L  C  G  L  K  F  K  H  I  I  L  F  S  S  P  S  L  L  S  S  C  N  L  S  D  F  I  L  P  R  E  D  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y  R :   Q  L  I  L  P  M  P  T  S  K  E  L  I  L  K  V  Q  I  *  R :   I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   S   : A  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  </second_frame>
            <third_frame>   G  V  E  S  I  F  C  L  G  E  *  Q  *  V  H  *  I  I  N  P  Q  T  L  R  M  A  Y  D  S  E  S  S  S  S  T  V  R  L  N  I   : G  G  R  K  F  C  T  T  L  D  T  L  T  Q  R  E  P  D  S  M  L  A  A  M  F  S  G  R  H  T  I  C  Q  E  S  E  K  :  D  L  S  F  V  D  F  S  Y  A  C  L  K  T  V  F  F  S  R  A  N  L  Q  C  A  K  F  R  :  A  L  H  V  C  V  D  *  N  L  S  T  *  Y  Y  F  Q  A  H  L  Y  C  Q  V  A  T  L  V  I  S  F  C  L  G  K  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P  T   : D  S  *  S  Y  Q  C  Q  P  R  R  S  *  S  *  R  C  K  S  E   : E  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  Q  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="227137" stop="227215"/>
                    <exon start="227880" stop="227938"/>
                    <exon start="228241" stop="228300"/>
                    <exon start="235781" stop="235840"/>
                    <exon start="236527" stop="236531"/>
                    <exon start="239005" stop="239026"/>
                    <exon start="239096" stop="239117"/>
                    <exon start="239170" stop="239180"/>
                    <exon start="240011" stop="240028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRCEFTGANLRGAVLAGANLQSANLQDACLIGCSFCGADLRSAHLQTADLTNANLEGANLEGANLKNLKGANLQRAYLRHVNLRDTLSPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="217354" stop="217426"/>
                    <exon start="218098" stop="218207"/>
                    <exon start="225155" stop="225238"/>
                    <exon start="227037" stop="227060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IINPQTLRMAYDSESSSSTVRLNIGGRKFCTTLDTLTQREPDSMLAAMFSGRHTICQESEKDLSFVDFSYACLKTVFFSRANLQCAKFRALHVCVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="218174" stop="218207"/>
                    <exon start="225155" stop="225238"/>
                    <exon start="227037" stop="227182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSSYYLPGVREGLVVCGFQLCMSKNSVLLTCQSSMCKIQGFTCLCGLKFKHIILFSSPSLLSSCNLSDFILPREDVNSLEQIFVELY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="217390" e_stop="217426"/>
            <exon e_start="218098" e_stop="218207"/>
            <exon e_start="225155" e_stop="225238"/>
            <exon e_start="226868" e_stop="226914"/>
            <exon e_start="227142" e_stop="227215"/>
            <exon e_start="227880" e_stop="227938"/>
            <exon e_start="228241" e_stop="228300"/>
            <exon e_start="235760" e_stop="235840"/>
            <exon e_start="236055" e_stop="236081"/>
            <exon e_start="236260" e_stop="236271"/>
            <exon e_start="237289" e_stop="237306"/>
            <exon e_start="238889" e_stop="238893"/>
            <exon e_start="239005" e_stop="239026"/>
            <exon e_start="239096" e_stop="239117"/>
            <exon e_start="239170" e_stop="239180"/>
            <exon e_start="240011" e_stop="240174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.319" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.553" acc_prob="0.949" e_score="0.667"/>
          <exon-intron don_prob="0.274" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.900" acc_prob="0.569" e_score="0.600"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="217390" e_stop="217426" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.905">
            <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="218098" e_stop="218207" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="218208" i_stop="225154" i_length="6947"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="225155" e_stop="225238" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.836" acc_prob="1.000">
            <gDNA_intron_boundary i_start="225239" i_stop="226867" i_length="1629"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="226868" e_stop="226914" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.319">
            <gDNA_intron_boundary i_start="226915" i_stop="227141" i_length="227"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="227142" e_stop="227215" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="227880" e_stop="227938" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="228241" e_stop="228300" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="235760" e_stop="235840" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="235841" i_stop="236054" i_length="214"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="236055" e_stop="236081" e_length="27"/>
          </exon>
          <intron i_serial="9" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="236082" i_stop="236259" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="236260" e_stop="236271" e_length="12"/>
          </exon>
          <intron i_serial="10" don_prob="0.553" acc_prob="0.949">
            <gDNA_intron_boundary i_start="236272" i_stop="237288" i_length="1017"/>
          </intron>
          <exon e_serial="11" e_score="0.556">
            <gDNA_exon_boundary e_start="237289" e_stop="237306" e_length="18"/>
          </exon>
          <intron i_serial="11" don_prob="0.274" acc_prob="0.000">
            <gDNA_intron_boundary i_start="237307" i_stop="238888" i_length="1582"/>
          </intron>
          <exon e_serial="12" e_score="0.600">
            <gDNA_exon_boundary e_start="238889" e_stop="238893" e_length="5"/>
          </exon>
          <intron i_serial="12" don_prob="0.900" acc_prob="0.569">
            <gDNA_intron_boundary i_start="238894" i_stop="239004" i_length="111"/>
          </intron>
          <exon e_serial="13" e_score="0.545">
            <gDNA_exon_boundary e_start="239005" e_stop="239026" e_length="22"/>
          </exon>
          <intron i_serial="13" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69"/>
          </intron>
          <exon e_serial="14" e_score="0.682">
            <gDNA_exon_boundary e_start="239096" e_stop="239117" e_length="22"/>
          </exon>
          <intron i_serial="14" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52"/>
          </intron>
          <exon e_serial="15" e_score="0.727">
            <gDNA_exon_boundary e_start="239170" e_stop="239180" e_length="11"/>
          </exon>
          <intron i_serial="15" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830"/>
          </intron>
          <exon e_serial="16" e_score="0.957">
            <gDNA_exon_boundary e_start="240011" e_stop="240174" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217390" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227215"/>
              <exon start="227880" stop="227935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217391" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="225155" stop="225238"/>
              <exon start="226868" stop="226914"/>
              <exon start="227142" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235760" stop="235840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="227148" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235760" stop="235840"/>
              <exon start="236055" stop="236081"/>
              <exon start="236260" stop="236271"/>
              <exon start="237289" stop="237306"/>
              <exon start="238889" stop="238893"/>
              <exon start="239005" stop="239026"/>
              <exon start="239096" stop="239117"/>
              <exon start="239170" stop="239180"/>
              <exon start="240011" stop="240174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG : GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG : GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG : GATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGA : ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG : ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG : GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CATCTGGAAGGAAAAAAAGTTGATAAT : ACCATCTTTCCT : GGCTGCAACATGCTTAAG : CGATA : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</gDNA_template>
            <first_frame> S  E  S  S  S  S  T  V  R  L  N  I   : G  G  R  K  F  C  T  T  L  D  T  L  T  Q  R  E  P  D  S  M  L  A  A  M  F  S  G  R  H  T  I  C  Q  E  S  E  K  :  D  L  S  F  V  D  F  S  Y  A  C  L  K  T  V  F  F  S  R  A  N  L  Q  C  A  K  F  R  :  D  V  D  A  E  A  S  I  F  H  N  A  T  L  R  E :   C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  Q  :  T  A  D  L  T  N  A  N  L  E  G  A  N  L  E  G  A  N  L  K  :  G  A  K  L  T  N  A  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  H  L  E  G  K  K  V  D  N  :  T  I  F  P  :  G  C  N  M  L  K  :  R  Y :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *  K  C  F  N  L  S  N   </first_frame>
            <second_frame>  P  K  V  R  L  P  R  F  V  *  I  S  :  E  E  G  S  F  A  L  H  W  I  P  S  H  N  V  S  Q  T  R  C  S  L  L  C  L  V  V  V  I  L  S  A  R  S  Q  R  R :   T  C  R  L  W  I  S  A  M  H  V  *  K  Q  C  S  S  H  V  P  I  F  N  V  Q  N  S  G :   M  L  M  P  K  L  P  F  F  T  M  P  H  C  A   : N  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y  R :   Q  L  I  L  P  M  P  T  S  K  E  L  I  L  K  V  Q  I  *  R :   V  R  S  *  P  M  Q  I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   I  W  K  E  K  K  L  I  I :   P  S  F  L :   A  A  T  C  L  S :   D   : T  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  N  V  L  T  C  Q  I  </second_frame>
            <third_frame>   R  K  F  V  F  H  G  S  S  E  Y  R :   R  K  E  V  L  H  Y  T  G  Y  P  H  T  T  *  A  R  L  D  A  R  C  Y  V  *  W  S  S  Y  Y  L  P  G  V  R  E   : G  L  V  V  C  G  F  Q  L  C  M  S  K  N  S  V  L  L  T  C  Q  S  S  M  C  K  I  Q   : G  C  *  C  R  S  F  H  F  S  Q  C  H  I  A  R  :  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P  T   : D  S  *  S  Y  Q  C  Q  P  R  R  S  *  S  *  R  C  K  S  E   : G  C  E  V  N  Q  C  K  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  S  G  R  K  K  S  *  *   : Y  H  L  S   : W  L  Q  H  A  *   : A  I  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K  M  F  *  L  V  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="217390" stop="217426"/>
                    <exon start="218098" stop="218207"/>
                    <exon start="225155" stop="225238"/>
                    <exon start="226868" stop="226914"/>
                    <exon start="227142" stop="227215"/>
                    <exon start="227880" stop="227938"/>
                    <exon start="228241" stop="228300"/>
                    <exon start="235760" stop="235840"/>
                    <exon start="236055" stop="236081"/>
                    <exon start="236260" stop="236271"/>
                    <exon start="237289" stop="237306"/>
                    <exon start="238889" stop="238893"/>
                    <exon start="239005" stop="239026"/>
                    <exon start="239096" stop="239117"/>
                    <exon start="239170" stop="239180"/>
                    <exon start="240011" stop="240028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SESSSSTVRLNIGGRKFCTTLDTLTQREPDSMLAAMFSGRHTICQESEKDLSFVDFSYACLKTVFFSRANLQCAKFRDVDAEASIFHNATLRECEFTGANLRGAVLAGANLQSANLQDACLIGCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLTNANLKGANLQRAYLRHVNLRDTHLEGKKVDNTIFPGCNMLKRYPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="226664" e_stop="227215"/>
            <exon e_start="227880" e_stop="227938"/>
            <exon e_start="228241" e_stop="228300"/>
            <exon e_start="235781" e_stop="235840"/>
            <exon e_start="236527" e_stop="236531"/>
            <exon e_start="239005" e_stop="239026"/>
            <exon e_start="239096" e_stop="239117"/>
            <exon e_start="239170" e_stop="239180"/>
            <exon e_start="240011" e_stop="240153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="0.926"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.868" e_score="0.617"/>
          <exon-intron don_prob="0.000" acc_prob="0.569" e_score="0.800"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="226664" e_stop="227215" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="227880" e_stop="227938" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="228241" e_stop="228300" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="228301" i_stop="235780" i_length="7480"/>
          </intron>
          <exon e_serial="4" e_score="0.617">
            <gDNA_exon_boundary e_start="235781" e_stop="235840" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.868">
            <gDNA_intron_boundary i_start="235841" i_stop="236526" i_length="686"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="236527" e_stop="236531" e_length="5"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="236532" i_stop="239004" i_length="2473"/>
          </intron>
          <exon e_serial="6" e_score="0.545">
            <gDNA_exon_boundary e_start="239005" e_stop="239026" e_length="22"/>
          </exon>
          <intron i_serial="6" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="0.682">
            <gDNA_exon_boundary e_start="239096" e_stop="239117" e_length="22"/>
          </exon>
          <intron i_serial="7" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52"/>
          </intron>
          <exon e_serial="8" e_score="0.727">
            <gDNA_exon_boundary e_start="239170" e_stop="239180" e_length="11"/>
          </exon>
          <intron i_serial="8" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830"/>
          </intron>
          <exon e_serial="9" e_score="0.930">
            <gDNA_exon_boundary e_start="240011" e_stop="240153" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="226664" stop="227215"/>
              <exon start="227880" stop="227936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="227055" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235781" stop="235840"/>
              <exon start="236527" stop="236531"/>
              <exon start="239005" stop="239026"/>
              <exon start="239096" stop="239117"/>
              <exon start="239170" stop="239180"/>
              <exon start="240011" stop="240153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431055" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG : ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG : AATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CTCAG : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAA</gDNA_template>
            <first_frame> K  K  D  K  E  K  E  K  I  T  F  M  Q  *  Y  S  W  L  D  G  G  I  F  N  V  F  V  D  E  G  V  G  L  *  E  H  L  *  F  *  A  H  Y  T  N  T  F  P  *  L  S  Y  *  I  I  L  F  F  F  L  I  V  L  *  L  L  S  Q  D  V  D  A  E  A  S  I  F  H  N  A  T  L  R  E  *  A  I  A  H  N  L  S  V  S  T  F  Y  V  D  H  A  *  C  L  I  I  V  T  V  F  D  F  L  K  I  H  P  L  Y  I  L  F  L  A  G  F  T  C  L  C  G  L  K  F  K  H  I  I  L  F  S  S  P  S  L  L  S  S  C  N  L  S  D  F  I  L  P  R  E  D  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y  R :   Q  L  I  L  P  M  P  T  S  K  E  L  I  L  K  V  Q  I  *  R :   I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   S   : A  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  </first_frame>
            <second_frame>  K  R  I  R  K  R  K  R  *  L  L  C  S  D  T  L  G  W  M  V  V  Y  S  M  S  L  L  T  R  E  W  D  S  R  N  I  C  N  S  K  L  I  T  L  I  P  F  H  D  L  V  T  R  *  Y  Y  F  F  S  *  L  F  F  N  F  C  R  R  M  L  M  P  K  L  P  F  F  T  M  P  H  C  A  S  K  L  *  R  I  I  F  R  S  P  H  F  M  *  I  M  H  S  V  *  S  S  *  Q  C  L  I  F  *  R  F  T  L  F  I  S  S  F  *  Q  A  L  H  V  C  V  D  *  N  L  S  T  *  Y  Y  F  Q  A  H  L  Y  C  Q  V  A  T  L  V  I  S  F  C  L  G  K  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P  T   : D  S  *  S  Y  Q  C  Q  P  R  R  S  *  S  *  R  C  K  S  E   : E  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  Q  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K </second_frame>
            <third_frame>   K  G  *  G  K  G  K  D  N  F  Y  A  V  I  L  L  V  G  W  W  Y  I  Q  C  L  C  *  R  G  S  G  T  L  G  T  F  V  I  L  S  S  L  H  *  Y  L  S  M  T  *  L  L  D  N  T  I  F  F  L  D  C  S  L  T  F  V  A  G  C  *  C  R  S  F  H  F  S  Q  C  H  I  A  R  V  S  Y  S  A  *  S  F  G  L  H  I  L  C  R  S  C  I  V  F  D  H  R  N  S  V  *  F  F  E  D  S  P  S  L  Y  P  L  F  S  R  L  Y  M  F  V  W  I  K  I  *  A  H  N  I  I  F  K  P  I  F  T  V  K  L  Q  P  *  *  F  H  F  A  *  G  R  C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  Q  :  T  A  D  L  T  N  A  N  L  E  G  A  N  L  E  G  A  N  L  K  :  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  L  S :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="227137" stop="227215"/>
                    <exon start="227880" stop="227938"/>
                    <exon start="228241" stop="228300"/>
                    <exon start="235781" stop="235840"/>
                    <exon start="236527" stop="236531"/>
                    <exon start="239005" stop="239026"/>
                    <exon start="239096" stop="239117"/>
                    <exon start="239170" stop="239180"/>
                    <exon start="240011" stop="240028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRCEFTGANLRGAVLAGANLQSANLQDACLIGCSFCGADLRSAHLQTADLTNANLEGANLEGANLKNLKGANLQRAYLRHVNLRDTLSPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="225600" e_stop="226197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="225600" e_stop="226197" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="225600" stop="226197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="225600" stop="225983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAG</gDNA_template>
            <first_frame> A  A  V  N  L  S  R  A  L  N  W  S  *  L  A  C  F  S  P  I  E  V  I  D  E  R  *  V  S  *  *  P  I  S  Q  K  W  L  D  W  G  L  T  R  L  Y  Q  L  D  E  R  F  V  I  L  F  G  C  S  I  G  R  K  K  L  W  K  W  L  A  M  V  Q  D  P  S  F  C  L  *  V  S  S  L  N  G  H  H  K  C  N  T  L  L  D  *  *  L  L  Q  I  L  I  P  Q  S  V  I  S  S  L  L  C  K  L  S  P  F  I  M  L  R  G  V  L  D  I  I  F  E  *  V  V  V  C  I  T  N  V  H  D  C  M  P  Y  I  G  *  K  K  F  W  R  *  *  A  M  L  H  R  D  I  D  S  *  F  A  L  I  Y  Q  *  *  L  G  M  T  *  *  Y  H  I  G  L  C  V  V  K  S  H  S  *  F  H  I  T  *  S  *  </first_frame>
            <second_frame>  Q  R  S  T  L  A  E  R  S  T  G  A  N  W  H  A  S  V  L  L  R  L  L  M  R  D  E  C  L  S  S  Q  F  H  K  N  G  W  T  G  V  *  L  G  Y  T  S  *  M  K  G  L  *  S  C  L  A  A  A  *  E  G  R  S  Y  G  N  G  *  L  W  Y  R  T  L  H  F  V  F  K  Y  P  R  *  M  G  I  T  S  V  T  P  C  W  I  D  S  F  C  R  F  S  Y  L  S  Q  *  F  L  V  F  F  A  N  C  L  L  L  L  C  *  G  V  F  W  T  L  F  L  S  K  W  *  F  V  *  Q  M  Y  T  I  V  C  L  I  L  G  K  R  S  F  G  D  S  K  Q  C  Y  I  E  T  *  T  L  N  L  P  *  Y  T  N  D  D  S  V  *  H  S  N  I  I  L  D  C  V  W  L  N  L  I  P  D  S  I  *  H  N  H  K </second_frame>
            <third_frame>   S  G  Q  P  *  P  S  A  Q  L  E  L  I  G  M  L  Q  S  Y  *  G  Y  *  *  E  M  S  V  L  V  A  N  F  T  K  M  A  G  L  G  F  D  *  V  I  P  A  R  *  K  V  C  N  L  V  W  L  Q  H  R  K  E  E  V  M  E  M  V  S  Y  G  T  G  P  F  I  L  S  L  S  I  L  V  E  W  A  S  Q  V  *  H  L  V  G  L  I  A  F  A  D  S  H  T  S  V  S  D  F  *  S  S  L  Q  I  V  S  F  Y  Y  A  K  G  C  S  G  H  Y  F  *  V  S  G  S  L  Y  N  K  C  T  R  L  Y  A  L  Y  W  V  K  E  V  L  E  I  V  S  N  V  T  *  R  H  R  L  L  I  C  L  D  I  P  M  M  T  R  Y  D  I  V  I  S  Y  W  T  V  C  G  *  I  S  F  L  I  P  Y  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="217333" e_stop="217426"/>
            <exon e_start="218098" e_stop="218207"/>
            <exon e_start="223145" e_stop="223300"/>
            <exon e_start="225155" e_stop="225238"/>
            <exon e_start="227142" e_stop="227215"/>
            <exon e_start="227880" e_stop="227938"/>
            <exon e_start="228241" e_stop="228300"/>
            <exon e_start="235760" e_stop="235840"/>
            <exon e_start="236055" e_stop="236081"/>
            <exon e_start="236260" e_stop="236271"/>
            <exon e_start="237289" e_stop="237306"/>
            <exon e_start="238889" e_stop="238893"/>
            <exon e_start="239005" e_stop="239026"/>
            <exon e_start="239096" e_stop="239117"/>
            <exon e_start="239170" e_stop="239180"/>
            <exon e_start="240011" e_stop="240174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.905" e_score="0.872"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="0.964"/>
          <exon-intron don_prob="0.856" acc_prob="0.994" e_score="0.987"/>
          <exon-intron don_prob="0.836" acc_prob="0.319" e_score="0.976"/>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="0.985"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="0.983"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.553" acc_prob="0.949" e_score="0.667"/>
          <exon-intron don_prob="0.274" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.900" acc_prob="0.569" e_score="0.600"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.872">
            <gDNA_exon_boundary e_start="217333" e_stop="217426" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.905">
            <gDNA_intron_boundary i_start="217427" i_stop="218097" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="218098" e_stop="218207" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="218208" i_stop="223144" i_length="4937"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="223145" e_stop="223300" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.856" acc_prob="0.994">
            <gDNA_intron_boundary i_start="223301" i_stop="225154" i_length="1854"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="225155" e_stop="225238" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.836" acc_prob="0.319">
            <gDNA_intron_boundary i_start="225239" i_stop="227141" i_length="1903"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="227142" e_stop="227215" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="227216" i_stop="227879" i_length="664"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="227880" e_stop="227938" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="227939" i_stop="228240" i_length="302"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="228241" e_stop="228300" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="228301" i_stop="235759" i_length="7459"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="235760" e_stop="235840" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="235841" i_stop="236054" i_length="214"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="236055" e_stop="236081" e_length="27"/>
          </exon>
          <intron i_serial="9" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="236082" i_stop="236259" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="236260" e_stop="236271" e_length="12"/>
          </exon>
          <intron i_serial="10" don_prob="0.553" acc_prob="0.949">
            <gDNA_intron_boundary i_start="236272" i_stop="237288" i_length="1017"/>
          </intron>
          <exon e_serial="11" e_score="0.556">
            <gDNA_exon_boundary e_start="237289" e_stop="237306" e_length="18"/>
          </exon>
          <intron i_serial="11" don_prob="0.274" acc_prob="0.000">
            <gDNA_intron_boundary i_start="237307" i_stop="238888" i_length="1582"/>
          </intron>
          <exon e_serial="12" e_score="0.600">
            <gDNA_exon_boundary e_start="238889" e_stop="238893" e_length="5"/>
          </exon>
          <intron i_serial="12" don_prob="0.900" acc_prob="0.569">
            <gDNA_intron_boundary i_start="238894" i_stop="239004" i_length="111"/>
          </intron>
          <exon e_serial="13" e_score="0.545">
            <gDNA_exon_boundary e_start="239005" e_stop="239026" e_length="22"/>
          </exon>
          <intron i_serial="13" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="239027" i_stop="239095" i_length="69"/>
          </intron>
          <exon e_serial="14" e_score="0.682">
            <gDNA_exon_boundary e_start="239096" e_stop="239117" e_length="22"/>
          </exon>
          <intron i_serial="14" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239118" i_stop="239169" i_length="52"/>
          </intron>
          <exon e_serial="15" e_score="0.727">
            <gDNA_exon_boundary e_start="239170" e_stop="239180" e_length="11"/>
          </exon>
          <intron i_serial="15" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="239181" i_stop="240010" i_length="830"/>
          </intron>
          <exon e_serial="16" e_score="0.957">
            <gDNA_exon_boundary e_start="240011" e_stop="240174" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="217333" stop="217426"/>
              <exon start="218098" stop="218207"/>
              <exon start="223145" stop="223300"/>
              <exon start="225155" stop="225238"/>
              <exon start="227142" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235760" stop="235832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="227148" stop="227215"/>
              <exon start="227880" stop="227938"/>
              <exon start="228241" stop="228300"/>
              <exon start="235760" stop="235840"/>
              <exon start="236055" stop="236081"/>
              <exon start="236260" stop="236271"/>
              <exon start="237289" stop="237306"/>
              <exon start="238889" stop="238893"/>
              <exon start="239005" stop="239026"/>
              <exon start="239096" stop="239117"/>
              <exon start="239170" stop="239180"/>
              <exon start="240011" stop="240174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGACAGTGAGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG : GAGGAAGGAAGTTTTGCACTACACTGGATACCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG : GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG : GACTTGTCGTTTGTGGATTTCAGCTATGCATGTCTAAAAACAGTGTTCTTCTCACGTGCCAATCTTCAATGTGCAAAATTCAGG : ATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTACAG : ACAGCTGATCTTACCAATGCCAACCTCGAAGGAGCTAATCTTGAAGGTGCAAATCTGAAG : GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CATCTGGAAGGAAAAAAAGTTGATAAT : ACCATCTTTCCT : GGCTGCAACATGCTTAAG : CGATA : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</gDNA_template>
            <first_frame> E  *  Q  *  V  H  *  I  I  N  P  Q  T  L  R  M  A  Y  D  S  E  S  S  S  S  T  V  R  L  N  I   : G  G  R  K  F  C  T  T  L  D  T  L  T  Q  R  E  P  D  S  M  L  A  A  M  F  S  G  R  H  T  I  C  Q  E  S  E  K  :  G  L  V  D  G  I  K  S  A  L  S  K  R  K  E  D  E  E  L  G  T  E  L  T  R  I  D  I  I  K  C  I  Q  S  E  R  V  R  F  R  G  I  N  L  S  G  L  D  L  S  K  L  :  D  L  S  F  V  D  F  S  Y  A  C  L  K  T  V  F  F  S  R  A  N  L  Q  C  A  K  F  R  :  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P  T   : D  S  *  S  Y  Q  C  Q  P  R  R  S  *  S  *  R  C  K  S  E   : G  C  E  V  N  Q  C  K  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  S  G  R  K  K  S  *  *   : Y  H  L  S   : W  L  Q  H  A  *   : A  I  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K  M  F  *  L  V  K  S </first_frame>
            <second_frame>  S  D  S  E  S  I  E  S  S  I  L  K  L  *  E  W  P  M  T  P  K  V  R  L  P  R  F  V  *  I  S  :  E  E  G  S  F  A  L  H  W  I  P  S  H  N  V  S  Q  T  R  C  S  L  L  C  L  V  V  V  I  L  S  A  R  S  Q  R  R :   V  *  *  M  E  L  N  L  P  *  V  R  G  R  R  M  R  S  W  V  L  N  *  H  A  L  T  L  S  N  A  Y  S  L  R  E  S  D  F  G  E  L  I  F  L  V  L  I  F  R  S  W :   T  C  R  L  W  I  S  A  M  H  V  *  K  Q  C  S  S  H  V  P  I  F  N  V  Q  N  S  G :   C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  Q  :  T  A  D  L  T  N  A  N  L  E  G  A  N  L  E  G  A  N  L  K  :  G  A  K  L  T  N  A  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  H  L  E  G  K  K  V  D  N  :  T  I  F  P  :  G  C  N  M  L  K  :  R  Y :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *  K  C  F  N  L  S  N   </second_frame>
            <third_frame>   V  T  V  S  P  L  N  H  Q  S  S  N  S  E  N  G  L  *  L  R  K  F  V  F  H  G  S  S  E  Y  R :   R  K  E  V  L  H  Y  T  G  Y  P  H  T  T  *  A  R  L  D  A  R  C  Y  V  *  W  S  S  Y  Y  L  P  G  V  R  E   : G  S  S  R  W  N  *  I  C  P  K  *  E  E  G  G  *  G  V  G  Y  *  I  D  T  H  *  H  Y  Q  M  H  T  V  *  E  S  Q  I  S  G  N  *  S  F  W  S  *  S  F  E  V   : G  L  V  V  C  G  F  Q  L  C  M  S  K  N  S  V  L  L  T  C  Q  S  S  M  C  K  I  Q   : D  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y  R :   Q  L  I  L  P  M  P  T  S  K  E  L  I  L  K  V  Q  I  *  R :   V  R  S  *  P  M  Q  I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   I  W  K  E  K  K  L  I  I :   P  S  F  L :   A  A  T  C  L  S :   D   : T  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  N  V  L  T  C  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="225192" stop="225238"/>
                    <exon start="227142" stop="227215"/>
                    <exon start="227880" stop="227938"/>
                    <exon start="228241" stop="228300"/>
                    <exon start="235760" stop="235840"/>
                    <exon start="236055" stop="236081"/>
                    <exon start="236260" stop="236271"/>
                    <exon start="237289" stop="237306"/>
                    <exon start="238889" stop="238893"/>
                    <exon start="239005" stop="239026"/>
                    <exon start="239096" stop="239117"/>
                    <exon start="239170" stop="239180"/>
                    <exon start="240011" stop="240028"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQCSSHVPIFNVQNSGCEFTGANLRGAVLAGANLQSANLQDACLIGCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLTNANLKGANLQRAYLRHVNLRDTHLEGKKVDNTIFPGCNMLKRYPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="24" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="217354" stop="217426"/>
                    <exon start="218098" stop="218207"/>
                    <exon start="223145" stop="223300"/>
                    <exon start="225155" stop="225238"/>
                    <exon start="227142" stop="227147"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IINPQTLRMAYDSESSSSTVRLNIGGRKFCTTLDTLTQREPDSMLAAMFSGRHTICQESEKGLVDGIKSALSKRKEDEELGTELTRIDIIKCIQSERVRFRGINLSGLDLSKLDLSFVDFSYACLKTVFFSRANLQCAKFRM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="243868" PGL_stop="244115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="243868" e_stop="244115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="243868" e_stop="244115" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="243868" stop="244115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATTTAACAGGAGGCGAAAAGCCAAAATTTGCAGGGTATACAGAAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAAGATGAAGTTACAAAACCCCTTGAGCATGAGTCAACTCAACTGAACATTCCTATGAACTTTACAAATAACTTGACAGAATCAAAATAACAGGTCAGTATGACAGTCAATCCTTTGCTAGAAACATCAGTTCAGTGGGATTCCCAAATCACTCCTTCAATCTGTA</gDNA_template>
            <first_frame> Y  I  *  Q  E  A  K  S  Q  N  L  Q  G  I  Q  K  G  P  G  S  W  G  G  H  P  N  M  *  R  *  S  Y  K  T  P  *  A  *  V  N  S  T  E  H  S  Y  E  L  Y  K  *  L  D  R  I  K  I  T  G  Q  Y  D  S  Q  S  F  A  R  N  I  S  S  V  G  F  P  N  H  S  F  N  L   </first_frame>
            <second_frame>  I  F  N  R  R  R  K  A  K  I  C  R  V  Y  R  K  D  L  G  P  G  V  V  T  Q  I  C  K  D  E  V  T  K  P  L  E  H  E  S  T  Q  L  N  I  P  M  N  F  T  N  N  L  T  E  S  K  *  Q  V  S  M  T  V  N  P  L  L  E  T  S  V  Q  W  D  S  Q  I  T  P  S  I  C  </second_frame>
            <third_frame>   Y  L  T  G  G  E  K  P  K  F  A  G  Y  T  E  R  T  W  V  L  G  W  S  P  K  Y  V  K  M  K  L  Q  N  P  L  S  M  S  Q  L  N  *  T  F  L  *  T  L  Q  I  T  *  Q  N  Q  N  N  R  S  V  *  Q  S  I  L  C  *  K  H  Q  F  S  G  I  P  K  S  L  L  Q  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="252438" PGL_stop="243878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="252438" e_stop="251857"/>
            <exon e_start="251246" e_stop="251157"/>
            <exon e_start="251080" e_stop="250844"/>
            <exon e_start="250591" e_stop="250370"/>
            <exon e_start="250283" e_stop="250172"/>
            <exon e_start="248041" e_stop="247883"/>
            <exon e_start="246588" e_stop="246536"/>
            <exon e_start="246425" e_stop="246346"/>
            <exon e_start="246229" e_stop="246150"/>
            <exon e_start="246037" e_stop="245997"/>
            <exon e_start="245021" e_stop="244973"/>
            <exon e_start="244110" e_stop="243878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.330" e_score="0.983"/>
          <exon-intron don_prob="0.973" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.458" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="252438" e_stop="251857" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.925">
            <gDNA_intron_boundary i_start="251856" i_stop="251247" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="251246" e_stop="251157" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.952">
            <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="251080" e_stop="250844" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.330">
            <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="250591" e_stop="250370" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.994">
            <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="250283" e_stop="250172" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.762">
            <gDNA_intron_boundary i_start="250171" i_stop="248042" i_length="2130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="248041" e_stop="247883" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="247882" i_stop="246589" i_length="1294"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="246588" e_stop="246536" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.458" acc_prob="0.990">
            <gDNA_intron_boundary i_start="246535" i_stop="246426" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="246425" e_stop="246346" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.933">
            <gDNA_intron_boundary i_start="246345" i_stop="246230" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="246229" e_stop="246150" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="246149" i_stop="246038" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="246037" e_stop="245997" e_length="41"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="245996" i_stop="245022" i_length="975"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="245021" e_stop="244973" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="244972" i_stop="244111" i_length="862"/>
          </intron>
          <exon e_serial="12" e_score="0.936">
            <gDNA_exon_boundary e_start="244110" e_stop="243878" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="252438" stop="251857"/>
              <exon start="251246" stop="251157"/>
              <exon start="251080" stop="251067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251199" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250172"/>
              <exon start="248041" stop="247967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251199" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251169" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="250568" stop="250370"/>
              <exon start="250283" stop="250172"/>
              <exon start="248041" stop="247883"/>
              <exon start="246588" stop="246536"/>
              <exon start="246425" stop="246357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="246579" stop="246536"/>
              <exon start="246425" stop="246346"/>
              <exon start="246229" stop="246150"/>
              <exon start="246037" stop="245997"/>
              <exon start="245021" stop="244973"/>
              <exon start="244110" stop="243878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="246376" stop="246346"/>
              <exon start="246229" stop="246150"/>
              <exon start="246037" stop="245997"/>
              <exon start="245021" stop="244973"/>
              <exon start="244110" stop="243878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG : ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT : GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAG : GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG : GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT : CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG : GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA : GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAG : TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG : GTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAG : TCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT : ATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</gDNA_template>
            <first_frame> S  A  E  N  E  E  S  K  K  H  S  L  H  P  M  E  V  E  K  A  E  C  V  S  E  F  G  A  T  E  N  T  L  E  A  C  M  L  E  C  K  D  S  V  V  E  N  D  N  M  D  S  L  E  T  Q  I  V  V  L  D  S  E  K  N  S  L  N  V  S  T  S  D  N  V  D  S  S  K  D  Q  N  L  V  Q  L  G  E  E  G  Y  S  Q  G  R  E  E  T  K  E  A  V  D  T  S  L  R  L  N  E  G  I  L  L  S  G  E  M  E  A  L  E  R  K  K  R  R  R  T  E  I  F  I  G  G  L  G  K  E  S  K  E  E  D  I  R  S  I  F  G  E  V  G  E  V  V  D  V  R  L  L  I  N  H  E  T  G  K  N  K  G  F  A  F  L  R  Y  A  S  A  A  D  A  K  K  A  V  E  R  Y  S  K  V  E  :  I  S  G  K  Q  C  R  V  S  L  A  E  G  N  D  T  I  Y  L  G  N  I  D  K  K  W  K  T  E  D  :  V  I  D  L  L  K  K  A  G  I  E  N  I  D  K  V  T  V  M  A  N  P  N  N  I  E  Q  N  R  G  F  A  F  V  E  L  E  T  S  K  E  A  Q  I  A  F  S  K  L  Q  K  K  D  A  F  G  K  H  M  N  V  K  V  A  W  A  Q  P  L  I  E  P  N  E  E  E  L  L  K  :  V  K  S  V  Y  A  E  Y  L  P  S  S  W  I  E  E  K  V  R  D  Y  F  G  K  F  G  E  I  E  S  V  V  L  A  K  D  L  P  S  S  R  R  K  D  F  A  F  V  N  Y  I  S  R  E  S  A  L  A  C  I  E  G  F  S  H  E  P  A  N  E  S  G  S  K  :  V  S  I  K  V  S  L  A  K  P  M  P  K  S  K  Q  T  K  R  V  T  L  P  T  R  R  E  P  P  E  K  K  K  I  Q  D  H   : S  I  L  K  R  H  E  P  S  R  K  V  N  Y  M  R  R  Y  D  E  D  H  R  V  E  G  S  S  S  T  T  N  E  L  L  H  L  L  R  Q  Q  G  P  V  R  Q  L  H  S  G  L  N  M   : G  I  N  H  Q  Y  S  L  S  G  S  K  R  P  F  S  A  V  :  V  H  N  P  H  R  M  D  S  S  G  V  S  R  V  H  L  E  S  S  F  P  T  A  N  R  S :   M  L  P  H  S  R  G  P  L  G  T  P  S  F  A  Y  Y  G  Q  L  G  S  D  H  S  P   : G  S  V  Y  G  V  Q  S  F  P  N  S  F  Q  :  S  H  D  H  D  P  Y  G  G  N  R  S  I  Y  R  R   : Y  *  R  S  D  L  G  I  P  L  N  *  C  F  *  Q  R  I  D  C  H  T  D  L  L  F  *  F  C  Q  V  I  C  K  V  H  R  N  V  Q  L  S  *  L  M  L  K  G  F  C  N  F  I  F  T  Y  L  G  D  H  P  R  T  Q  V  L  S  V  Y  P  A  N  F  G  F  S  P  P </first_frame>
            <second_frame>  Q  L  K  M  R  S  Q  R  N  I  V  Y  I  R  W  K  L  R  R  L  S  V  L  V  S  L  V  Q  L  K  T  H  *  R  L  A  C  W  N  A  K  I  V  L  L  R  M  I  I  W  I  P  L  K  H  K  L  *  F  L  I  Q  K  K  I  V  L  M  F  L  L  V  I  M  W  I  R  V  R  I  K  I  W  F  S  W  E  R  K  G  T  V  K  A  E  R  K  Q  R  K  L  W  I  L  V  *  G  *  M  K  E  F  Y  *  V  G  K  W  R  H  *  N  G  K  R  G  G  G  Q  R  Y  S  L  G  D  *  A  R  S  Q  R  K  R  I  L  G  V  S  L  V  R  L  V  R  L  W  M  *  D  C  *  *  I  M  K  Q  E  R  T  R  G  L  L  S  S  G  M  L  L  L  L  M  Q  R  R  L  *  K  D  I  P  K  L  R :   Y  L  G  S  N  V  V  Y  P  L  L  R  V  M  T  Q  Y  T  W  V  I  L  T  R  N  G  R  L  K  M :   *  L  I  Y  *  R  R  L  E  L  K  I  S  I  R  S  Q  L  W  L  I  L  T  T  S  S  R  I  E  A  L  H  L  L  N  L  K  Q  V  K  K  L  R  L  L  S  V  N  S  K  R  R  M  L  L  G  N  T  *  T  *  K  L  H  G  H  S  L  *  L  S  Q  M  K  K  N  C  *  R :   L  N  Q  F  M  L  N  I  Y  L  P  H  G  L  K  K  K  C  E  T  T  L  A  N  L  V  K  L  R  V  L  F  L  Q  K  I  F  L  P  Q  G  E  K  I  L  P  L  S  I  I  *  A  A  S  L  L  L  R  A  L  K  D  S  V  M  N  Q  L  M  K  A  D  P  R :   *  A  L  R  Y  L  L  L  N  P  C  Q  R  V  S  K  L  N  V  *  P  F  L  L  E  G  N  L  R  R  R  R  K  Y  R  T  I  :  P  S  *  R  G  M  N  P  A  E  R  *  T  T  *  E  D  M  M  R  I  T  E  L  K  D  L  L  L  Q  P  M  N  F  C  T  S  *  D  N  K  G  Q  F  V  S  S  I  P  V  *  T  W  :  V  L  T  I  S  T  R  Y  L  E  A  S  D  R  F  Q  L  * :   Y  I  I  H  I  V  W  I  P  V  E  F  L  E  C  T  *  K  A  L  S  L  L  Q  T  E   : V  C  C  H  I  V  V  D  L  W  V  H  H  L  L  P  I  M  A  S  L  A  V  T  I  H  Q  :  V  Q  F  M  G  S  K  A  F  R  I  L  F  S :   L  M  T  T  T  L  M  V  E  I  V  A  Y  I  V  D  :  I  E  G  V  I  W  E  S  H  *  T  D  V  S  S  K  G  L  T  V  I  L  T  C  Y  F  D  S  V  K  L  F  V  K  F  I  G  M  F  S  *  V  D  S  C  S  R  G  F  V  T  S  S  L  H  I  W  V  T  T  P  G  P  R  S  F  L  Y  T  L  Q  I  L  A  F  R  L   </second_frame>
            <third_frame>   S  *  K  *  G  V  K  E  T  *  F  T  S  D  G  S  *  E  G  *  V  C  *  *  V  W  C  N  *  K  H  I  R  G  L  H  V  G  M  Q  R  *  C  C  *  E  *  *  Y  G  F  P  *  N  T  N  C  S  S  *  F  R  K  K  *  S  *  C  F  Y  *  *  *  C  G  F  E  *  G  S  K  F  G  S  V  G  R  G  R  V  Q  S  R  Q  R  G  N  K  G  S  C  G  Y  *  S  E  V  E  *  R  N  S  I  E  W  G  N  G  G  I  R  T  E  K  E  A  E  D  R  D  I  H  W  G  I  R  Q  G  V  K  G  R  G  Y  *  E  Y  L  W  *  G  W  *  G  C  G  C  K  I  V  D  K  S  *  N  R  K  E  Q  G  V  C  F  P  P  V  C  F  C  C  *  C  K  E  G  C  R  K  I  F  Q  S  *   : D  I  W  E  A  M  S  C  I  P  C  *  G  *  *  H  N  I  P  G  *  Y  *  Q  E  M  E  D  *  R   : C  D  *  S  T  E  E  G  W  N  *  K  Y  R  *  G  H  S  Y  G  *  S  *  Q  H  R  A  E  S  R  L  C  I  C  *  T  *  N  K  *  R  S  S  D  C  F  Q  *  T  P  K  E  G  C  F  W  E  T  H  E  R  K  S  C  M  G  T  A  F  N  *  A  K  *  R  R  T  A  K   : G  *  I  S  L  C  *  I  F  T  F  L  M  D  *  R  K  S  A  R  L  L  W  Q  I  W  *  N  *  E  C  C  S  C  K  R  S  S  F  L  K  E  K  R  F  C  L  C  Q  L  Y  K  P  R  V  C  S  C  V  H  *  R  I  Q  S  *  T  S  *  *  K  R  I  Q   : G  K  H  *  G  I  S  C  *  T  H  A  K  E  *  A  N  *  T  C  N  P  S  Y  *  K  G  T  S  G  E  E  E  N  T  G  P  F :   H  L  E  E  A  *  T  Q  Q  K  G  K  L  H  E  K  I  *  *  G  S  Q  S  *  R  I  F  F  Y  N  Q  *  T  S  A  P  L  E  T  T  R  A  S  S  S  A  P  F  R  F  E  H  G :   Y  *  P  S  V  L  V  I  W  K  Q  A  T  V  F  S  C   : S  T  *  S  T  S  Y  G  F  Q  W  S  F  *  S  A  L  R  K  L  F  P  Y  C  K  P  K  :  Y  V  A  T  *  S  W  T  S  G  Y  T  I  F  C  L  L  W  P  A  W  Q  *  P  F  T  R :   F  S  L  W  G  P  K  L  S  E  F  F  S   : V  S  *  P  R  P  L  W  W  K  S  *  H  I  S  *  I :   L  K  E  *  F  G  N  P  T  E  L  M  F  L  A  K  D  *  L  S  Y  *  P  V  I  L  I  L  S  S  Y  L  *  S  S  *  E  C  S  V  E  L  T  H  A  Q  G  V  L  *  L  H  L  Y  I  F  G  *  P  P  Q  D  P  G  P  F  C  I  P  C  K  F  W  L  F  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="252438" stop="251857"/>
                    <exon start="251246" stop="251157"/>
                    <exon start="251080" stop="250844"/>
                    <exon start="250591" stop="250370"/>
                    <exon start="250283" stop="250172"/>
                    <exon start="248041" stop="247883"/>
                    <exon start="246588" stop="246536"/>
                    <exon start="246425" stop="246346"/>
                    <exon start="246229" stop="246150"/>
                    <exon start="246037" stop="245997"/>
                    <exon start="245021" stop="244973"/>
                    <exon start="244110" stop="244106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1707</number_coding_nucleotides>
                  <number_encoded_amino_acids>569</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAENEESKKHSLHPMEVEKAECVSEFGATENTLEACMLECKDSVVENDNMDSLETQIVVLDSEKNSLNVSTSDNVDSSKDQNLVQLGEEGYSQGREETKEAVDTSLRLNEGILLSGEMEALERKKRRRTEIFIGGLGKESKEEDIRSIFGEVGEVVDVRLLINHETGKNKGFAFLRYASAADAKKAVERYSKVEISGKQCRVSLAEGNDTIYLGNIDKKWKTEDVIDLLKKAGIENIDKVTVMANPNNIEQNRGFAFVELETSKEAQIAFSKLQKKDAFGKHMNVKVAWAQPLIEPNEEELLKVKSVYAEYLPSSWIEEKVRDYFGKFGEIESVVLAKDLPSSRRKDFAFVNYISRESALACIEGFSHEPANESGSKVSIKVSLAKPMPKSKQTKRVTLPTRREPPEKKKIQDHSILKRHEPSRKVNYMRRYDEDHRVEGSSSTTNELLHLLRQQGPVRQLHSGLNMGINHQYSLSGSKRPFSAVVHNPHRMDSSGVSRVHLESSFPTANRSMLPHSRGPLGTPSFAYYGQLGSDHSPGSVYGVQSFPNSFQSHDHDPYGGNRSIYRRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="252438" e_stop="251857"/>
            <exon e_start="251246" e_stop="251157"/>
            <exon e_start="251080" e_stop="250844"/>
            <exon e_start="250591" e_stop="250370"/>
            <exon e_start="250283" e_stop="250172"/>
            <exon e_start="248041" e_stop="247883"/>
            <exon e_start="247211" e_stop="247205"/>
            <exon e_start="246588" e_stop="246536"/>
            <exon e_start="246425" e_stop="246346"/>
            <exon e_start="246229" e_stop="246150"/>
            <exon e_start="246037" e_stop="245997"/>
            <exon e_start="245021" e_stop="244973"/>
            <exon e_start="244110" e_stop="243878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.330" e_score="0.983"/>
          <exon-intron don_prob="0.973" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.983" acc_prob="0.762" e_score="0.929"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="0.943"/>
          <exon-intron don_prob="0.550" acc_prob="0.977" e_score="0.429"/>
          <exon-intron don_prob="0.458" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.933" e_score="0.950"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="252438" e_stop="251857" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.925">
            <gDNA_intron_boundary i_start="251856" i_stop="251247" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="251246" e_stop="251157" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.952">
            <gDNA_intron_boundary i_start="251156" i_stop="251081" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="251080" e_stop="250844" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.330">
            <gDNA_intron_boundary i_start="250843" i_stop="250592" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="250591" e_stop="250370" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.994">
            <gDNA_intron_boundary i_start="250369" i_stop="250284" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="250283" e_stop="250172" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.762">
            <gDNA_intron_boundary i_start="250171" i_stop="248042" i_length="2130"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="248041" e_stop="247883" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="247882" i_stop="247212" i_length="671"/>
          </intron>
          <exon e_serial="7" e_score="0.429">
            <gDNA_exon_boundary e_start="247211" e_stop="247205" e_length="7"/>
          </exon>
          <intron i_serial="7" don_prob="0.550" acc_prob="0.977">
            <gDNA_intron_boundary i_start="247204" i_stop="246589" i_length="616"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="246588" e_stop="246536" e_length="53"/>
          </exon>
          <intron i_serial="8" don_prob="0.458" acc_prob="0.990">
            <gDNA_intron_boundary i_start="246535" i_stop="246426" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="246425" e_stop="246346" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.873" acc_prob="0.933">
            <gDNA_intron_boundary i_start="246345" i_stop="246230" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="246229" e_stop="246150" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="246149" i_stop="246038" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="0.976">
            <gDNA_exon_boundary e_start="246037" e_stop="245997" e_length="41"/>
          </exon>
          <intron i_serial="11" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="245996" i_stop="245022" i_length="975"/>
          </intron>
          <exon e_serial="12" e_score="0.980">
            <gDNA_exon_boundary e_start="245021" e_stop="244973" e_length="49"/>
          </exon>
          <intron i_serial="12" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="244972" i_stop="244111" i_length="862"/>
          </intron>
          <exon e_serial="13" e_score="0.936">
            <gDNA_exon_boundary e_start="244110" e_stop="243878" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="252438" stop="251857"/>
              <exon start="251246" stop="251157"/>
              <exon start="251080" stop="251067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251199" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250172"/>
              <exon start="248041" stop="247967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251199" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251169" stop="251157"/>
              <exon start="251080" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="251013" stop="250844"/>
              <exon start="250591" stop="250370"/>
              <exon start="250283" stop="250172"/>
              <exon start="248041" stop="247883"/>
              <exon start="247211" stop="247205"/>
              <exon start="246588" stop="246536"/>
              <exon start="246425" stop="246400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="246579" stop="246536"/>
              <exon start="246425" stop="246346"/>
              <exon start="246229" stop="246150"/>
              <exon start="246037" stop="245997"/>
              <exon start="245021" stop="244973"/>
              <exon start="244110" stop="243878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="246376" stop="246346"/>
              <exon start="246229" stop="246150"/>
              <exon start="246037" stop="245997"/>
              <exon start="245021" stop="244973"/>
              <exon start="244110" stop="243878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG : ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT : GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAG : GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG : GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT : CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG : GTACTGG : GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA : GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAG : TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG : GTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAG : TCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT : ATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</gDNA_template>
            <first_frame> S  A  E  N  E  E  S  K  K  H  S  L  H  P  M  E  V  E  K  A  E  C  V  S  E  F  G  A  T  E  N  T  L  E  A  C  M  L  E  C  K  D  S  V  V  E  N  D  N  M  D  S  L  E  T  Q  I  V  V  L  D  S  E  K  N  S  L  N  V  S  T  S  D  N  V  D  S  S  K  D  Q  N  L  V  Q  L  G  E  E  G  Y  S  Q  G  R  E  E  T  K  E  A  V  D  T  S  L  R  L  N  E  G  I  L  L  S  G  E  M  E  A  L  E  R  K  K  R  R  R  T  E  I  F  I  G  G  L  G  K  E  S  K  E  E  D  I  R  S  I  F  G  E  V  G  E  V  V  D  V  R  L  L  I  N  H  E  T  G  K  N  K  G  F  A  F  L  R  Y  A  S  A  A  D  A  K  K  A  V  E  R  Y  S  K  V  E  :  I  S  G  K  Q  C  R  V  S  L  A  E  G  N  D  T  I  Y  L  G  N  I  D  K  K  W  K  T  E  D  :  V  I  D  L  L  K  K  A  G  I  E  N  I  D  K  V  T  V  M  A  N  P  N  N  I  E  Q  N  R  G  F  A  F  V  E  L  E  T  S  K  E  A  Q  I  A  F  S  K  L  Q  K  K  D  A  F  G  K  H  M  N  V  K  V  A  W  A  Q  P  L  I  E  P  N  E  E  E  L  L  K  :  V  K  S  V  Y  A  E  Y  L  P  S  S  W  I  E  E  K  V  R  D  Y  F  G  K  F  G  E  I  E  S  V  V  L  A  K  D  L  P  S  S  R  R  K  D  F  A  F  V  N  Y  I  S  R  E  S  A  L  A  C  I  E  G  F  S  H  E  P  A  N  E  S  G  S  K  :  V  S  I  K  V  S  L  A  K  P  M  P  K  S  K  Q  T  K  R  V  T  L  P  T  R  R  E  P  P  E  K  K  K  I  Q  D  H   : S  I  L  K  R  H  E  P  S  R  K  V  N  Y  M  R  R  Y  D  E  D  H  R  V  E  G  S  S  S  T  T  N  E  L  L  H  L  L  R  Q  Q  G  P  V  R  Q  L  H  S  G  L  N  M   : G  T  G :   Y  *  P  S  V  L  V  I  W  K  Q  A  T  V  F  S  C   : S  T  *  S  T  S  Y  G  F  Q  W  S  F  *  S  A  L  R  K  L  F  P  Y  C  K  P  K  :  Y  V  A  T  *  S  W  T  S  G  Y  T  I  F  C  L  L  W  P  A  W  Q  *  P  F  T  R :   F  S  L  W  G  P  K  L  S  E  F  F  S   : V  S  *  P  R  P  L  W  W  K  S  *  H  I  S  *  I :   L  K  E  *  F  G  N  P  T  E  L  M  F  L  A  K  D  *  L  S  Y  *  P  V  I  L  I  L  S  S  Y  L  *  S  S  *  E  C  S  V  E  L  T  H  A  Q  G  V  L  *  L  H  L  Y  I  F  G  *  P  P  Q  D  P  G  P  F  C  I  P  C  K  F  W  L  F  A  S  </first_frame>
            <second_frame>  Q  L  K  M  R  S  Q  R  N  I  V  Y  I  R  W  K  L  R  R  L  S  V  L  V  S  L  V  Q  L  K  T  H  *  R  L  A  C  W  N  A  K  I  V  L  L  R  M  I  I  W  I  P  L  K  H  K  L  *  F  L  I  Q  K  K  I  V  L  M  F  L  L  V  I  M  W  I  R  V  R  I  K  I  W  F  S  W  E  R  K  G  T  V  K  A  E  R  K  Q  R  K  L  W  I  L  V  *  G  *  M  K  E  F  Y  *  V  G  K  W  R  H  *  N  G  K  R  G  G  G  Q  R  Y  S  L  G  D  *  A  R  S  Q  R  K  R  I  L  G  V  S  L  V  R  L  V  R  L  W  M  *  D  C  *  *  I  M  K  Q  E  R  T  R  G  L  L  S  S  G  M  L  L  L  L  M  Q  R  R  L  *  K  D  I  P  K  L  R :   Y  L  G  S  N  V  V  Y  P  L  L  R  V  M  T  Q  Y  T  W  V  I  L  T  R  N  G  R  L  K  M :   *  L  I  Y  *  R  R  L  E  L  K  I  S  I  R  S  Q  L  W  L  I  L  T  T  S  S  R  I  E  A  L  H  L  L  N  L  K  Q  V  K  K  L  R  L  L  S  V  N  S  K  R  R  M  L  L  G  N  T  *  T  *  K  L  H  G  H  S  L  *  L  S  Q  M  K  K  N  C  *  R :   L  N  Q  F  M  L  N  I  Y  L  P  H  G  L  K  K  K  C  E  T  T  L  A  N  L  V  K  L  R  V  L  F  L  Q  K  I  F  L  P  Q  G  E  K  I  L  P  L  S  I  I  *  A  A  S  L  L  L  R  A  L  K  D  S  V  M  N  Q  L  M  K  A  D  P  R :   *  A  L  R  Y  L  L  L  N  P  C  Q  R  V  S  K  L  N  V  *  P  F  L  L  E  G  N  L  R  R  R  R  K  Y  R  T  I  :  P  S  *  R  G  M  N  P  A  E  R  *  T  T  *  E  D  M  M  R  I  T  E  L  K  D  L  L  L  Q  P  M  N  F  C  T  S  *  D  N  K  G  Q  F  V  S  S  I  P  V  *  T  W  :  V  L   : G  I  N  H  Q  Y  S  L  S  G  S  K  R  P  F  S  A  V  :  V  H  N  P  H  R  M  D  S  S  G  V  S  R  V  H  L  E  S  S  F  P  T  A  N  R  S :   M  L  P  H  S  R  G  P  L  G  T  P  S  F  A  Y  Y  G  Q  L  G  S  D  H  S  P   : G  S  V  Y  G  V  Q  S  F  P  N  S  F  Q  :  S  H  D  H  D  P  Y  G  G  N  R  S  I  Y  R  R   : Y  *  R  S  D  L  G  I  P  L  N  *  C  F  *  Q  R  I  D  C  H  T  D  L  L  F  *  F  C  Q  V  I  C  K  V  H  R  N  V  Q  L  S  *  L  M  L  K  G  F  C  N  F  I  F  T  Y  L  G  D  H  P  R  T  Q  V  L  S  V  Y  P  A  N  F  G  F  S  P  P </second_frame>
            <third_frame>   S  *  K  *  G  V  K  E  T  *  F  T  S  D  G  S  *  E  G  *  V  C  *  *  V  W  C  N  *  K  H  I  R  G  L  H  V  G  M  Q  R  *  C  C  *  E  *  *  Y  G  F  P  *  N  T  N  C  S  S  *  F  R  K  K  *  S  *  C  F  Y  *  *  *  C  G  F  E  *  G  S  K  F  G  S  V  G  R  G  R  V  Q  S  R  Q  R  G  N  K  G  S  C  G  Y  *  S  E  V  E  *  R  N  S  I  E  W  G  N  G  G  I  R  T  E  K  E  A  E  D  R  D  I  H  W  G  I  R  Q  G  V  K  G  R  G  Y  *  E  Y  L  W  *  G  W  *  G  C  G  C  K  I  V  D  K  S  *  N  R  K  E  Q  G  V  C  F  P  P  V  C  F  C  C  *  C  K  E  G  C  R  K  I  F  Q  S  *   : D  I  W  E  A  M  S  C  I  P  C  *  G  *  *  H  N  I  P  G  *  Y  *  Q  E  M  E  D  *  R   : C  D  *  S  T  E  E  G  W  N  *  K  Y  R  *  G  H  S  Y  G  *  S  *  Q  H  R  A  E  S  R  L  C  I  C  *  T  *  N  K  *  R  S  S  D  C  F  Q  *  T  P  K  E  G  C  F  W  E  T  H  E  R  K  S  C  M  G  T  A  F  N  *  A  K  *  R  R  T  A  K   : G  *  I  S  L  C  *  I  F  T  F  L  M  D  *  R  K  S  A  R  L  L  W  Q  I  W  *  N  *  E  C  C  S  C  K  R  S  S  F  L  K  E  K  R  F  C  L  C  Q  L  Y  K  P  R  V  C  S  C  V  H  *  R  I  Q  S  *  T  S  *  *  K  R  I  Q   : G  K  H  *  G  I  S  C  *  T  H  A  K  E  *  A  N  *  T  C  N  P  S  Y  *  K  G  T  S  G  E  E  E  N  T  G  P  F :   H  L  E  E  A  *  T  Q  Q  K  G  K  L  H  E  K  I  *  *  G  S  Q  S  *  R  I  F  F  Y  N  Q  *  T  S  A  P  L  E  T  T  R  A  S  S  S  A  P  F  R  F  E  H  G :   Y  W  :  V  L  T  I  S  T  R  Y  L  E  A  S  D  R  F  Q  L  * :   Y  I  I  H  I  V  W  I  P  V  E  F  L  E  C  T  *  K  A  L  S  L  L  Q  T  E   : V  C  C  H  I  V  V  D  L  W  V  H  H  L  L  P  I  M  A  S  L  A  V  T  I  H  Q  :  V  Q  F  M  G  S  K  A  F  R  I  L  F  S :   L  M  T  T  T  L  M  V  E  I  V  A  Y  I  V  D  :  I  E  G  V  I  W  E  S  H  *  T  D  V  S  S  K  G  L  T  V  I  L  T  C  Y  F  D  S  V  K  L  F  V  K  F  I  G  M  F  S  *  V  D  S  C  S  R  G  F  V  T  S  S  L  H  I  W  V  T  T  P  G  P  R  S  F  L  Y  T  L  Q  I  L  A  F  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="252438" stop="251857"/>
                    <exon start="251246" stop="251157"/>
                    <exon start="251080" stop="250844"/>
                    <exon start="250591" stop="250370"/>
                    <exon start="250283" stop="250172"/>
                    <exon start="248041" stop="247883"/>
                    <exon start="247211" stop="247205"/>
                    <exon start="246588" stop="246582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAENEESKKHSLHPMEVEKAECVSEFGATENTLEACMLECKDSVVENDNMDSLETQIVVLDSEKNSLNVSTSDNVDSSKDQNLVQLGEEGYSQGREETKEAVDTSLRLNEGILLSGEMEALERKKRRRTEIFIGGLGKESKEEDIRSIFGEVGEVVDVRLLINHETGKNKGFAFLRYASAADAKKAVERYSKVEISGKQCRVSLAEGNDTIYLGNIDKKWKTEDVIDLLKKAGIENIDKVTVMANPNNIEQNRGFAFVELETSKEAQIAFSKLQKKDAFGKHMNVKVAWAQPLIEPNEEELLKVKSVYAEYLPSSWIEEKVRDYFGKFGEIESVVLAKDLPSSRRKDFAFVNYISRESALACIEGFSHEPANESGSKVSIKVSLAKPMPKSKQTKRVTLPTRREPPEKKKIQDHSILKRHEPSRKVNYMRRYDEDHRVEGSSSTTNELLHLLRQQGPVRQLHSGLNMGTGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="247888" stop="247883"/>
                    <exon start="247211" stop="247205"/>
                    <exon start="246588" stop="246536"/>
                    <exon start="246425" stop="246346"/>
                    <exon start="246229" stop="246150"/>
                    <exon start="246037" stop="245997"/>
                    <exon start="245021" stop="244973"/>
                    <exon start="244110" stop="244106"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWVLGINHQYSLSGSKRPFSAVVHNPHRMDSSGVSRVHLESSFPTANRSMLPHSRGPLGTPSFAYYGQLGSDHSPGSVYGVQSFPNSFQSHDHDPYGGNRSIYRRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="247572" e_stop="247357"/>
            <exon e_start="247275" e_stop="246808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.912"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="247572" e_stop="247357" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="247356" i_stop="247276" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="247275" e_stop="246808" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="247572" stop="247357"/>
              <exon start="247275" stop="246808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="247572" stop="247357"/>
              <exon start="247275" stop="246838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG : GGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAG</gDNA_template>
            <first_frame> E  R  S  H  E  Q  G  I  L  F  L  S  R  T  P  R  L  E  D  V  S  I  Q  Y  Y  V  G  H  E  V  Y  Y  A  F  I  P  S  L  I  Y  S  S  E  I  A  L  V  M  S  V  N  M  S  F  S  S  *  R  Y  F  G  E  E  G  Q  M  L  L  *  L  L  *  :  G  P  V  C  V  Y  L  R  *  Y  S  I  L  C  L  L  P  S  A  N  T  G  T  G  *  L  C  P  P  T  L  A  I  W  K  E  I  S  Q  H  F  L  L  V  L  G  F  E  F  *  S  P  M  V  F  P  T  S  L  A  H  W  V  L  K  N  G  L  *  N  L  S  F  L  L  K  Q  K  K  E  S  R  S  L  K  V  T  I  S  A  *  Q  C  Y  Q  K  Q  K  A  Q  R  S  S  K  V  C  W  V  V  G  F  S  E  K  G  A  K  G  E  K  N  I  N  I  Y  V  *  F  K  N  N  I  T  Q  L  E  L  G  V  T  K  G  T  K  Y  E  R  T  M  V  Q  P  W  V  W  E </first_frame>
            <second_frame>  N  D  L  M  N  K  E  F  Y  S  *  V  E  P  L  G  W  K  M  C  P  S  N  I  M  L  D  M  K  F  I  M  L  L  S  P  L  L  F  I  R  Q  R  L  L  *  *  C  R  L  I  C  P  S  V  V  K  G  I  L  V  K  R  V  K  C  F  F  S  Y  S  R :   G  R  F  A  C  T  Y  A  S  I  L  S  Y  A  C  Y  L  L  P  T  Q  V  L  G  N  F  V  H  Q  H  L  L  Y  G  K  R  S  P  S  I  F  Y  W  C  L  D  L  S  F  D  L  P  W  F  F  L  L  H  W  P  I  G  S  *  K  M  D  F  R  T  S  V  F  F  *  N  K  R  K  K  A  G  A  *  K  *  R  L  V  P  S  S  V  I  K  S  K  K  R  K  E  V  L  R  S  V  G  L  W  A  L  V  K  K  A  Q  R  E  K  K  I  *  I  Y  M  F  S  S  R  I  I  L  P  S  W  S  W  E  S  P  R  E  Q  N  M  K  E  P  W  C  N  R  G  Y  G   </second_frame>
            <third_frame>   T  I  S  *  T  R  N  F  I  P  K  *  N  P  *  A  G  R  C  V  H  P  I  L  C  W  T  *  S  L  L  C  F  Y  P  L  S  Y  L  F  V  R  D  C  F  S  D  V  G  *  Y  V  L  Q  *  L  K  V  F  W  *  R  G  S  N  A  S  L  V  T  L   : G  A  G  L  R  V  P  T  L  V  F  Y  L  M  L  A  T  F  C  Q  H  R  Y  W  V  T  L  S  T  N  T  C  Y  M  E  R  D  L  P  A  F  S  I  G  A  W  I  *  V  L  I  S  H  G  F  S  Y  F  I  G  P  L  G  P  K  K  W  T  L  E  P  Q  F  S  F  K  T  K  E  R  K  Q  E  L  E  S  N  D  *  C  L  A  V  L  S  K  A  K  S  A  K  K  F  *  G  L  L  G  C  G  L  *  *  K  R  R  K  G  R  K  K  Y  K  Y  I  C  L  V  Q  E  *  Y  Y  P  V  G  V  G  S  H  Q  G  N  K  I  *  K  N  H  G  A  T  V  G  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="247430" stop="247357"/>
                    <exon start="247275" stop="247083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRLICPSVVKGILVKRVKCFFSYSRGRFACTYASILSYACYLLPTQVLGNFVHQHLLYGKRSPSIFYWCLDLSFDLPWFFLLHWPIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="247305" e_stop="246690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="247305" e_stop="246690" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="247305" stop="246690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCC</gDNA_template>
            <first_frame> N  E  A  L  F  I  K  G  L  F  G  P  V  C  V  Y  L  R  *  Y  S  I  L  C  L  L  P  S  A  N  T  G  T  G  *  L  C  P  P  T  L  A  I  W  K  E  I  S  Q  H  F  L  L  V  L  G  F  E  F  *  S  P  M  V  F  P  T  S  L  A  H  W  V  L  K  N  G  L  *  N  L  S  F  L  L  K  Q  K  K  E  S  R  S  L  K  V  T  I  S  A  *  Q  C  Y  Q  K  Q  K  A  Q  R  S  S  K  V  C  W  V  V  G  F  S  E  K  G  A  K  G  E  K  N  I  N  I  Y  V  *  F  K  N  N  I  T  Q  L  E  L  G  V  T  K  G  T  K  Y  E  R  T  M  V  Q  P  W  V  W  E  F  G  G  S  V  T  W  *  G  K  R  D  K  R  S  I  Y  L  L  *  F  L  C  F  L  L  C  C  I  C  F  M  F  L  M  V  I  H  C  </first_frame>
            <second_frame>  M  R  P  F  L  L  R  G  Y  S  G  R  F  A  C  T  Y  A  S  I  L  S  Y  A  C  Y  L  L  P  T  Q  V  L  G  N  F  V  H  Q  H  L  L  Y  G  K  R  S  P  S  I  F  Y  W  C  L  D  L  S  F  D  L  P  W  F  F  L  L  H  W  P  I  G  S  *  K  M  D  F  R  T  S  V  F  F  *  N  K  R  K  K  A  G  A  *  K  *  R  L  V  P  S  S  V  I  K  S  K  K  R  K  E  V  L  R  S  V  G  L  W  A  L  V  K  K  A  Q  R  E  K  K  I  *  I  Y  M  F  S  S  R  I  I  L  P  S  W  S  W  E  S  P  R  E  Q  N  M  K  E  P  W  C  N  R  G  Y  G  S  L  G  V  L  *  P  G  K  E  K  E  I  R  G  V  F  T  F  Y  S  S  Y  A  F  Y  F  V  V  Y  V  L  C  F  *  W  L  F  I  A </second_frame>
            <third_frame>   *  G  P  F  Y  *  G  V  I  R  A  G  L  R  V  P  T  L  V  F  Y  L  M  L  A  T  F  C  Q  H  R  Y  W  V  T  L  S  T  N  T  C  Y  M  E  R  D  L  P  A  F  S  I  G  A  W  I  *  V  L  I  S  H  G  F  S  Y  F  I  G  P  L  G  P  K  K  W  T  L  E  P  Q  F  S  F  K  T  K  E  R  K  Q  E  L  E  S  N  D  *  C  L  A  V  L  S  K  A  K  S  A  K  K  F  *  G  L  L  G  C  G  L  *  *  K  R  R  K  G  R  K  K  Y  K  Y  I  C  L  V  Q  E  *  Y  Y  P  V  G  V  G  S  H  Q  G  N  K  I  *  K  N  H  G  A  T  V  G  M  G  V  W  G  F  C  N  L  V  R  K  K  R  *  E  E  Y  L  P  F  I  V  L  M  L  S  T  L  L  Y  M  F  Y  V  F  N  G  Y  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="26" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="247304" stop="247083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPFLLRGYSGRFACTYASILSYACYLLPTQVLGNFVHQHLLYGKRSPSIFYWCLDLSFDLPWFFLLHWPIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="+" PGL_start="252560" PGL_stop="253273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="252560" e_stop="253273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="252560" e_stop="253273" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="252560" stop="253273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCCCTTTTCCTGGCAACAAGTTTGGGCACTTTCTTCTTCACAATCTTCTTGACAATCTTTACCGGACGAAGATTACCTTTTTCTGAATCAAGAACTGTGTTTCCTGTCTGGAGTGAACCTATATTGTCCTTGGCACCTTTATTTTCTGAAATGGGAAGCTGTAATTTACCTTCGTTTACACTAACCTCAGAGTCCATCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACCTTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACCCTCACTAACTGCAGCAGCATTACAAGGCTCTACATATACAGTTTCTAGTTCAATTGTGCCTCGAGAGTTAGCTTTTTTAACATCTAATGAATCCAAAACAGTTTCTGCGTCAGCAATTTCCCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCACTTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAGGGGAACCTAGATTGTCCTTTGCATCATTACATCCCAAAATTGGAAGCTCCAACTTATCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAGCATAACCTCAACAGCAATAATACCTTCCTCAACTTCTTTTGGCTGAAAATTGTCCTTC</gDNA_template>
            <first_frame> F  F  S  L  F  L  A  T  S  L  G  T  F  F  F  T  I  F  L  T  I  F  T  G  R  R  L  P  F  S  E  S  R  T  V  F  P  V  W  S  E  P  I  L  S  L  A  P  L  F  S  E  M  G  S  C  N  L  P  S  F  T  L  T  S  E  S  I  I  L  S  F  P  K  I  P  S  A  A  I  V  P  F  P  T  S  T  G  *  N  V  P  F  S  K  S  P  P  S  L  T  A  A  A  L  Q  G  S  T  Y  T  V  S  S  S  I  V  P  R  E  L  A  F  L  T  S  N  E  S  K  T  V  S  A  S  A  I  S  L  P  F  S  D  S  S  V  F  L  L  F  F  A  T  D  L  G  T  F  F  F  T  I  F  L  T  I  F  T  E  R  R  L  P  F  S  E  S  T  T  T  F  P  V  S  G  E  P  R  L  S  F  A  S  L  H  P  K  I  G  S  S  N  L  S  L  A  T  V  T  S  Q  S  F  I  P  S  F  P  S  I  T  S  T  A  I  I  P  S  S  T  S  F  G  *  K  L  S  F </first_frame>
            <second_frame>  F  F  P  F  S  W  Q  Q  V  W  A  L  S  S  S  Q  S  S  *  Q  S  L  P  D  E  D  Y  L  F  L  N  Q  E  L  C  F  L  S  G  V  N  L  Y  C  P  W  H  L  Y  F  L  K  W  E  A  V  I  Y  L  R  L  H  *  P  Q  S  P  S  F  Y  P  F  L  R  Y  P  Q  Q  Q  *  Y  L  S  Q  L  L  L  D  E  M  C  P  S  Q  S  H  H  P  H  *  L  Q  Q  H  Y  K  A  L  H  I  Q  F  L  V  Q  L  C  L  E  S  *  L  F  *  H  L  M  N  P  K  Q  F  L  R  Q  Q  F  P  C  L  F  L  I  P  Q  S  F  Y  C  S  L  Q  R  I  W  A  L  S  S  L  Q  S  S  *  Q  S  L  L  N  G  D  Y  L  F  L  N  Q  Q  L  H  F  L  S  Q  G  N  L  D  C  P  L  H  H  Y  I  P  K  L  E  A  P  T  Y  L  *  L  Q  *  P  H  S  P  S  F  H  P  F  L  A  *  P  Q  Q  Q  *  Y  L  P  Q  L  L  L  A  E  N  C  P   </second_frame>
            <third_frame>   F  F  P  F  P  G  N  K  F  G  H  F  L  L  H  N  L  L  D  N  L  Y  R  T  K  I  T  F  F  *  I  K  N  C  V  S  C  L  E  *  T  Y  I  V  L  G  T  F  I  F  *  N  G  K  L  *  F  T  F  V  Y  T  N  L  R  V  H  H  S  I  L  S  *  D  T  L  S  S  N  S  T  F  P  N  F  Y  W  M  K  C  A  L  L  K  V  T  T  L  T  N  C  S  S  I  T  R  L  Y  I  Y  S  F  *  F  N  C  A  S  R  V  S  F  F  N  I  *  *  I  Q  N  S  F  C  V  S  N  F  P  A  F  F  *  F  L  S  L  S  T  V  L  C  N  G  F  G  H  F  L  L  Y  N  L  L  D  N  L  Y  *  T  E  I  T  F  F  *  I  N  N  Y  I  S  C  L  R  G  T  *  I  V  L  C  I  I  T  S  Q  N  W  K  L  Q  L  I  F  S  Y  S  N  L  T  V  L  H  S  I  L  S  *  H  N  L  N  S  N  N  T  F  L  N  F  F  W  L  K  I  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="252827" stop="253261"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPFSKSPPSLTAAALQGSTYTVSSSIVPRELAFLTSNESKTVSASAISLPFSDSSVFLLFFATDLGTFFFTIFLTIFTERRLPFSESTTTFPVSGEPRLSFASLHPKIGSSNLSLATVTSQSFIPSFPSITSTAIIPSSTSFG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="27" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="252560" stop="252826"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLFLATSLGTFFFTIFLTIFTGRRLPFSESRTVFPVWSEPILSLAPLFSEMGSCNLPSFTLTSESIILSFPKIPSAAIVPFPTSTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="28" PGL_strand="-" PGL_start="253681" PGL_stop="253011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="253681" e_stop="253011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="253681" e_stop="253011" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="253681" stop="253011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="253681" stop="253085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="28" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACGCCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACGGTAAAGATTGTTAAGAAGATTATCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGACAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAAGTGCCCAAATCCGTTGCAA</gDNA_template>
            <first_frame> L  L  Y  K  F  *  N  Q  *  A  S  G  A  I  S  E  H  P  S  S  R  N  K  H  W  G  N  R  S  *  V  E  *  S  *  P  R  H  A  A  K  N  S  G  N  *  S  C  W  G  A  E  S  R  A  E  W  *  E  K  S  G  E  K  D  G  K  D  C  *  E  D  Y  Q  E  E  S  A  Q  I  C  C  K  E  Q  Q  N  D  G  R  I  R  R  R  P  R  R  N  C  F  G  F  T  R  C  *  E  S  *  L  S  R  H  N  *  T  R  N  C  M  F  R  G  *  *  C  C  Y  S  W  *  G  W  *  L  G  E  G  Q  F  S  A  K  R  S  *  G  R  Y  Y  C  C  *  G  Y  A  R  K  G  W  N  E  G  L  *  G  Y  C  S  *  R  *  V  G  A  S  N  F  G  M  *  *  C  K  G  Q  S  R  F  P  *  D  R  K  C  S  C  *  F  R  K  R  *  S  P  F  S  K  D  C  Q  E  D  C  K  E  E  S  A  Q  I  R  C   </first_frame>
            <second_frame>  Y  S  T  N  S  K  I  S  E  H  P  E  Q  S  L  S  I  Q  V  P  E  T  N  T  G  E  T  G  V  E  L  N  E  A  D  Q  G  T  P  P  K  T  V  E  I  K  A  V  G  E  Q  K  V  G  Q  S  G  K  K  K  V  V  K  K  T  V  K  I  V  K  K  I  I  K  R  K  V  P  K  S  V  A  K  N  S  K  M  T  D  E  S  E  E  G  H  A  E  T  V  L  D  S  L  D  V  E  K  A  S  S  R  G  T  I  E  P  E  T  V  C  L  E  V  S  S  A  A  T  V  G  E  G  G  N  S  E  K  D  N  F  Q  P  K  E  V  E  E  G  I  I  A  V  E  V  M  L  G  K  D  G  M  K  D  C  E  V  T  V  A  K  D  K  L  E  L  P  I  L  G  C  N  D  A  K  D  N  L  G  S  P  E  T  G  N  V  V  V  D  S  E  K  G  N  L  R  S  V  K  I  V  K  K  I  V  K  K  K  V  P  K  S  V  A  </second_frame>
            <third_frame>   T  L  Q  I  L  K  S  V  S  I  R  S  N  L  *  A  S  K  F  Q  K  Q  T  L  G  K  P  E  L  S  *  M  K  L  T  K  A  R  R  Q  K  Q  W  K  L  K  L  L  G  S  R  K  *  G  R  V  V  R  K  K  W  *  K  R  R  *  R  L  L  R  R  L  S  R  G  K  C  P  N  L  L  Q  R  T  A  K  *  R  T  N  Q  K  K  A  T  Q  K  L  F  W  I  H  S  M  L  R  K  L  A  L  E  A  Q  L  N  Q  K  L  Y  V  *  R  L  V  V  L  L  Q  L  V  R  V  V  T  R  R  R  T  I  F  S  Q  K  K  L  R  K  V  L  L  L  L  R  L  C  *  E  R  M  E  *  R  T  V  R  L  L  *  L  K  I  S  W  S  F  Q  F  W  D  V  M  M  Q  R  T  I  *  V  P  L  R  Q  E  M  *  L  L  I  Q  K  K  V  I  S  V  Q  *  R  L  S  R  R  L  *  R  R  K  C  P  N  P  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="28" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="253680" stop="253012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTNSKISEHPEQSLSIQVPETNTGETGVELNEADQGTPPKTVEIKAVGEQKVGQSGKKKVVKKTVKIVKKIIKRKVPKSVAKNSKMTDESEEGHAETVLDSLDVEKASSRGTIEPETVCLEVSSAATVGEGGNSEKDNFQPKEVEEGIIAVEVMLGKDGMKDCEVTVAKDKLELPILGCNDAKDNLGSPETGNVVVDSEKGNLRSVKIVKKIVKKKVPKSVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="29" PGL_strand="+" PGL_start="258707" PGL_stop="263810"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="258707" e_stop="258796"/>
            <exon e_start="258872" e_stop="258978"/>
            <exon e_start="259062" e_stop="259137"/>
            <exon e_start="260021" e_stop="260092"/>
            <exon e_start="260217" e_stop="260279"/>
            <exon e_start="261047" e_stop="261399"/>
            <exon e_start="262642" e_stop="262765"/>
            <exon e_start="263344" e_stop="263810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="258707" e_stop="258796" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258872" e_stop="258978" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="259062" e_stop="259137" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="260021" e_stop="260092" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="260217" e_stop="260279" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="261047" e_stop="261399" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="262642" e_stop="262765" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="263344" e_stop="263810" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258707" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258714" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258714" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258719" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258719" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258742" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261399"/>
              <exon start="262642" stop="262693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258745" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258745" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258768" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261399"/>
              <exon start="262642" stop="262672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258772" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261399"/>
              <exon start="262642" stop="262739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258772" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258772" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258776" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261399"/>
              <exon start="262642" stop="262673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258776" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258776" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260279"/>
              <exon start="261047" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258897" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261134" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261188" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261238" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261238" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261247" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263344" stop="263703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263363" stop="263703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</gDNA_template>
            <first_frame> S  A  V  T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I  Q  H  I  F  H  S  *  I  S  L  F  I  L  I  I  S  C  C  W  S  I  Y  E   </first_frame>
            <second_frame>  Q  L  S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  S  I  Y  S  T  L  R  *  V  Y  S  Y  *  S  F  H  V  V  G  Q  F  T  K  </second_frame>
            <third_frame>   S  C  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P  A  Y  I  P  L  L  D  K  F  I  H  I  N  H  F  M  L  L  V  N  L  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="258767" stop="258796"/>
                    <exon start="258872" stop="258978"/>
                    <exon start="259062" stop="259137"/>
                    <exon start="260021" stop="260092"/>
                    <exon start="260217" stop="260279"/>
                    <exon start="261047" stop="261399"/>
                    <exon start="262642" stop="262765"/>
                    <exon start="263344" stop="263364"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="29" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="263450" stop="263650"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="258714" e_stop="258796"/>
            <exon e_start="258872" e_stop="258978"/>
            <exon e_start="259062" e_stop="259137"/>
            <exon e_start="260021" e_stop="260092"/>
            <exon e_start="260199" e_stop="260279"/>
            <exon e_start="261047" e_stop="261399"/>
            <exon e_start="262642" e_stop="262765"/>
            <exon e_start="263344" e_stop="263810"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="258714" e_stop="258796" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258872" e_stop="258978" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="259062" e_stop="259137" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="260021" e_stop="260092" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.000">
            <gDNA_intron_boundary i_start="260093" i_stop="260198" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="260199" e_stop="260279" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="260280" i_stop="261046" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="261047" e_stop="261399" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="261400" i_stop="262641" i_length="1242"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="262642" e_stop="262765" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="262766" i_stop="263343" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="263344" e_stop="263810" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258714" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258731" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260199" stop="260279"/>
              <exon start="261047" stop="261194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258745" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261134" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261188" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261238" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261238" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="261247" stop="261399"/>
              <exon start="262642" stop="262765"/>
              <exon start="263344" stop="263808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263344" stop="263703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="263363" stop="263703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : TCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</gDNA_template>
            <first_frame> S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   L  L  I  A  S  R  K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  S  I  Y  S  T  L  R  *  V  Y  S  Y  *  S  F  H  V  V  G  Q  F  T  K  </first_frame>
            <second_frame>  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : V  Y  S  L  L  P  G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P  A  Y  I  P  L  L  D  K  F  I  H  I  N  H  F  M  L  L  V  N  L  R  K </second_frame>
            <third_frame>   T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  S  T  H  C  F  Q  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I  Q  H  I  F  H  S  *  I  S  L  F  I  L  I  I  S  C  C  W  S  I  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="29" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="258767" stop="258796"/>
                    <exon start="258872" stop="258978"/>
                    <exon start="259062" stop="259137"/>
                    <exon start="260021" stop="260092"/>
                    <exon start="260199" stop="260279"/>
                    <exon start="261047" stop="261399"/>
                    <exon start="262642" stop="262765"/>
                    <exon start="263344" stop="263364"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETRSTHCFQEVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="29" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="263450" stop="263650"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="258714" e_stop="258796"/>
            <exon e_start="258872" e_stop="258978"/>
            <exon e_start="259062" e_stop="259137"/>
            <exon e_start="260021" e_stop="260092"/>
            <exon e_start="260217" e_stop="260619"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.928"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="0.944"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="258714" e_stop="258796" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="258797" i_stop="258871" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258872" e_stop="258978" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="258979" i_stop="259061" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="259062" e_stop="259137" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="259138" i_stop="260020" i_length="883"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="260021" e_stop="260092" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="260093" i_stop="260216" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.891">
            <gDNA_exon_boundary e_start="260217" e_stop="260619" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258714" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258745" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258773" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258773" stop="258796"/>
              <exon start="258872" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="258897" stop="258978"/>
              <exon start="259062" stop="259137"/>
              <exon start="260021" stop="260092"/>
              <exon start="260217" stop="260264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="29" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</gDNA_template>
            <first_frame> S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R  *  Y  S  N  P  S  L  S  P  I  L  C  D  T  F  R  I  S  K  F  K  Q  V  Y  L  *  P  *  I  F  H  R  S  F  K  H  F  K  L  S  I  V  V  T  Y  S  T  F  Y  V  V  Y  K  Y  I  N  S  F  K  R  I  K  D  S  M  R  K  F  S  V  K  L  K  L  L  D  S  W  K  T  K  S  A  T  *  I  G  T  K  G  V  N  Q  I  G  G  *  F  F  L  Q  V  I  K  K  L  G  I  F  F  Y  F  L </first_frame>
            <second_frame>  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *  G  N  I  V  I  P  P  S  L  P  F  Y  V  T  L  F  G  F  R  N  S  N  K  S  I  F  D  R  K  F  F  I  D  L  L  N  I  L  N  Y  Q  L  W  *  L  I  V  L  F  M  *  F  T  N  I  *  I  H  S  K  E  L  K  I  P  C  A  N  F  R  S  N  L  N  Y  L  T  L  G  K  R  K  V  P  H  K  L  G  Q  R  E  *  I  K  L  V  D  N  S  S  F  K  L  L  K  S  W  A  S  F  F  I  F   </second_frame>
            <third_frame>   T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  V  I  *  *  S  L  P  L  S  H  F  M  *  H  F  S  D  F  E  I  Q  T  S  L  S  L  T  V  N  F  S  *  I  F  *  T  F  *  I  I  N  C  G  D  L  *  Y  F  L  C  S  L  Q  I  Y  K  F  I  Q  K  N  *  R  F  H  A  Q  I  F  G  Q  T  *  T  T  *  L  L  E  N  E  K  C  H  I  N  W  D  K  G  S  K  S  N  W  W  I  I  L  P  S  S  Y  *  K  V  G  H  L  F  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="29" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="258767" stop="258796"/>
                    <exon start="258872" stop="258978"/>
                    <exon start="259062" stop="259137"/>
                    <exon start="260021" stop="260092"/>
                    <exon start="260217" stop="260288"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="30" PGL_strand="+" PGL_start="268392" PGL_stop="268631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="268392" e_stop="268631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="268392" e_stop="268631" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="268392" stop="268631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="268392" stop="268631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="268393" stop="268631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="30" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</gDNA_template>
            <first_frame> V  S  F  N  L  Q  C  L  L  L  C  I  K  N  A  F  S  A  E  V  M  C  D  S  K  S  N  A  I  L  L  T  F  W  C  S  H  N  I  R  S  V  P  S  F  H  L  I  R  L  F  *  C  V  L  H  S  Y  L  *  *  N  L  M  Y  I  T  F  F  S  L  V  K  I  T  L  H  *  *  V </first_frame>
            <second_frame>  F  L  S  I  F  S  A  Y  C  F  A  *  K  M  H  F  L  Q  K  *  C  V  I  P  S  P  M  L  F  F  L  P  F  G  V  V  T  I  S  V  L  Y  P  R  F  T  *  L  D  Y  F  D  V  Y  Y  I  H  I  F  D  E  I  *  C  T  L  H  F  F  L  L  L  K  L  H  Y  I  N  E   </second_frame>
            <third_frame>   F  F  Q  S  S  V  P  T  A  L  H  K  K  C  I  F  C  R  S  N  V  *  F  Q  V  Q  C  Y  S  S  Y  L  L  V  *  S  Q  Y  P  F  C  T  L  V  S  P  N  *  I  I  L  M  C  T  T  F  I  S  L  M  K  F  D  V  H  Y  I  F  F  S  C  *  N  Y  I  T  L  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0201C12.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="31" PGL_strand="+" PGL_start="268998" PGL_stop="269862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="268998" e_stop="269025"/>
            <exon e_start="269201" e_stop="269862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.840" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="268998" e_stop="269025" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.840" acc_prob="0.000">
            <gDNA_intron_boundary i_start="269026" i_stop="269200" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="269201" e_stop="269862" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="268998" stop="269025"/>
              <exon start="269201" stop="269862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375001" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="31" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATCTTTTTCATATAATTTTTAAAAG : GAGAAAATGTAACTGTTTTATCAAGAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAGAGATAGGCTAAGAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTCTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAGAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAGAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAGATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCACTAGTGGGATGAAGGTGGCAAGGCATTCCATTCC</gDNA_template>
            <first_frame> N  I  F  F  I  *  F  L  K   : G  E  N  V  T  V  L  S  R  N  L  Y  K  H  V  K  F  R  A  A  R  G  K  D  D  N  H  M  K  E  L  Y  M  L  L  F  T  V  Y  F  L  L  N  F  Y  F  S  E  S  P  S  T  K  L  I  *  G  *  L  R  D  R  L  R  I  V  R  G  F  C  T  G  T  R  I  I  T  T  D  I  *  Q  L  Q  Q  K  V  *  F  T  D  R  A  S  W  V  V  N  K  *  L  S  L  S  S  T  Q  A  *  K  P  V  A  V  L  L  L  S  F  P  S  P  S  P  C  F  V  C  Q  L  Q  P  V  L  Y  A  T  S  P  F  L  P  P  W  Q  F  S  P  L  S  V  S  F  Y  V  P  A  L  M  Y  Q  N  L  S  R  R  K  T  W  A  P  V  Q  P  T  S  E  A  P  Q  L  S  H  T  A  C  T  P  L  M  S  R  *  A  H  D  K  P  R  Y  Q  E  C  N  P  I  H  R  E  H  *  W  D  E  G  G  K  A  F  H  S </first_frame>
            <second_frame>  T  S  F  S  Y  N  F  *  K  :  E  K  M  *  L  F  Y  Q  E  T  Y  T  N  T  S  N  S  G  L  Q  G  V  K  M  I  T  I  *  R  S  Y  T  C  F  C  S  L  Y  T  F  F  *  I  F  T  S  L  N  L  H  P  L  N  *  F  E  D  D  *  E  I  G  *  E  L  Y  V  V  F  A  L  G  Q  E  S  S  Q  Q  I  S  N  N  Y  S  K  K  C  N  L  Q  T  E  P  L  G  S  *  I  S  S  *  A  F  L  Q  P  R  H  R  N  L  L  Q  F  F  C  S  L  F  L  L  L  L  L  V  S  S  V  S  F  S  L  Y  F  T  Q  L  L  H  F  F  L  H  G  S  F  L  L  F  L  F  L  F  M  F  Q  H  *  C  I  R  I  F  H  G  E  K  H  G  P  Q  F  S  Q  P  V  R  L  H  S  C  H  T  L  H  V  L  L  *  C  Q  D  K  L  M  I  N  H  V  I  R  S  V  T  Q  S  I  E  S  T  S  G  M  K  V  A  R  H  S  I   </second_frame>
            <third_frame>   H  L  F  H  I  I  F  K  R :   R  K  C  N  C  F  I  K  K  L  I  Q  T  R  Q  I  Q  G  C  K  G  *  R  *  *  P  Y  E  G  V  I  H  A  F  V  H  C  I  L  S  F  E  F  L  L  L  *  I  S  I  H  *  I  N  L  R  M  T  K  R  *  A  K  N  C  T  W  F  L  H  W  D  K  N  H  H  N  R  Y  L  T  T  T  A  K  S  V  I  Y  R  P  S  L  L  G  R  K  *  V  V  E  P  F  F  N  P  G  I  E  T  C  C  S  S  F  A  L  F  S  F  S  F  S  L  F  R  L  S  A  S  A  C  T  L  R  N  F  S  I  S  S  S  M  A  V  F  S  S  F  C  F  F  L  C  S  S  I  D  V  S  E  S  F  T  E  K  N  M  G  P  S  S  A  N  Q  *  G  S  T  A  V  T  H  C  M  Y  S  F  D  V  K  I  S  S  *  *  T  T  L  S  G  V  *  P  N  P  *  R  A  L  V  G  *  R  W  Q  G  I  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="31" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="269527" stop="269778"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPVAVLLLSFPSPSPCFVCQLQPVLYATSPFLPPWQFSPLSVSFYVPALMYQNLSRRKTWAPVQPTSEAPQLSHTACTPLMSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="31" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="269496" stop="269729"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEPFFNPGIETCCSSFALFSFSFSLFRLSASACTLRNFSISSSMAVFSSFCFFLCSSIDVSESFTEKNMGPSSANQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="32" PGL_strand="-" PGL_start="270672" PGL_stop="269345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="270672" e_stop="269345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="270672" e_stop="269345" e_length="1328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="270672" stop="269885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="270504" stop="270098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="270171" stop="269378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="270081" stop="269582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="270063" stop="269584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269990" stop="269579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269984" stop="269345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269984" stop="269358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269984" stop="269484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269984" stop="269489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="269630" stop="269355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="32" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</gDNA_template>
            <first_frame> A  M  V  K  *  R  C  T  I  L  V  W  V  W  M  L  C  K  C  S  L  L  V  E  L  Q  L  T  S  V  L  V  E  L  V  E  L  A  Q  E  L  V  T  G  F  I  L  R  M  R  M  R  M  K  C  C  K  V  P  C  Q  R  F  N  G  Q  I  L  G  M  W  F  C  C  S  S  L  S  K  F  R  T  C  W  I  L  I  L  W  T  H  L  L  R  I  T  S  L  T  P  C  I  S  C  G  Y  *  V  H  L  T  M  L  G  I  *  Q  A  L  A  G  K  W  W  S  S  H  W  I  L  P  L  P  K  C  S  *  W  E  N  N  *  N  V  *  M  R  F  *  L  L  F  L  C  F  Q  C  L  L  F  S  L  D  P  R  I  G  L  R  K  V  M  L  L  G  K  S  F  L  C  Q  N  L  I  T  L  H  C  L  M  F  T  S  N  G  K  L  I  N  T  E  G  T  G  V  M  T  T  I  Y  R  S  K  V  Y  A  R  L  G  K  *  G  L  N  C  W  I  S  S  R  H  L  K  F  H  S  L  P  V  V  L  I  G  M  L  *  G  K  P  S  A  L  R  T  S  I  M  Q  L  G  *  K  E  L  G  N  M  L  I  A  G  M  E  C  L  A  T  F  I  P  L  V  L  S  M  D  W  V  T  L  L  I  T  W  F  I  M  S  L  S  *  H  Q  R  S  T  C  S  V  *  Q  L  W  S  L  T  G  W  L  N  W  G  P  C  F  S  P  *  K  I  L  I  H  Q  C  W  N  I  K  R  N  R  K  R  R  K  L  P  W  R  K  K  W  R  S  C  V  K  Y  R  L  K  L  T  D  E  T  R  R  R  R  R  K  R  E  Q  K  N  C  N  R  F  L  C  L  G  *  R  K  A  Q  L  L  I  Y  D  P  R  G  S  V  C  K  L  H  F  L  L  *  L  L  D  I  C  C  D  D  S  C  P  S  A  K  T  T  Y  N  S  *  P  I  S  *  S  S  S  N  *  F  S  G  W   </first_frame>
            <second_frame>  L  W  *  N  E  G  V  Q  S  S  Y  G  Y  G  C  S  A  S  V  P  Y  *  S  S  C  S  *  P  A  C  W  S  S  W  *  N  W  P  R  N  L  L  P  A  L  Y  *  E  C  V  *  E  *  N  A  A  K  S  R  A  R  D  S  T  D  K  S  W  E  C  G  F  A  A  Q  V  S  Q  N  S  E  P  V  G  F  *  F  Y  G  P  T  S  S  G  *  H  P  *  L  H  V  S  V  V  G  I  R  C  T  *  Q  C  W  G  F  N  K  P  W  L  E  N  G  G  V  P  I  G  S  S  P  C  Q  N  A  L  D  G  R  T  T  R  M  F  K  *  G  S  D  Y  C  F  Y  A  F  S  A  F  C  F  L  *  T  Q  G  *  G  *  G  K  *  C  C  *  G  K  V  F  C  A  R  I  *  S  P  Y  T  A  *  C  L  P  A  M  E  S  *  S  I  Q  R  G  L  V  *  *  P  L  F  T  G  Q  R  F  T  Q  G  *  G  S  K  V  S  I  A  G  Y  P  Q  D  T  *  N  S  T  H  F  L  W  S  *  L  G  C  C  K  E  S  H  L  L  C  V  L  P  *  C  S  *  A  E  R  S  W  G  I  C  *  L  Q  E  W  N  A  L  P  P  S  S  H  *  C  S  L  W  I  G  L  H  S  *  *  R  G  L  S  *  A  Y  L  D  I  K  G  V  H  A  V  C  D  S  C  G  A  S  L  V  G  *  T  G  A  H  V  F  L  R  E  R  F  *  Y  I  N  A  G  T  *  K  E  T  E  R  G  E  N  C  H  G  G  R  N  G  E  V  A  *  S  T  G  *  S  *  Q  T  K  Q  G  E  G  E  G  K  E  S  K  R  T  A  T  G  F  Y  A  W  V  E  E  R  L  N  Y  L  F  T  T  Q  E  A  R  S  V  N  Y  T  F  C  C  S  C  *  I  S  V  V  M  I  L  V  P  V  Q  K  P  R  T  I  L  S  L  S  L  S  H  P  Q  I  N  L  V  D  G  </second_frame>
            <third_frame>   Y  G  K  M  K  V  Y  N  P  R  M  G  M  D  A  L  Q  V  F  P  I  S  R  A  A  A  D  Q  R  A  G  R  A  G  R  T  G  P  G  T  C  Y  R  L  Y  T  E  N  A  Y  E  N  E  M  L  Q  S  P  V  P  E  I  Q  R  T  N  L  G  N  V  V  L  L  L  K  S  L  K  I  Q  N  L  L  D  F  D  F  M  D  P  P  P  Q  D  N  I  L  N  S  M  Y  Q  L  W  V  L  G  A  L  N  N  V  G  D  L  T  S  L  G  W  K  M  V  E  F  P  L  D  P  P  L  A  K  M  L  L  M  G  E  Q  L  E  C  L  N  E  V  L  T  I  V  S  M  L  S  V  P  S  V  F  F  R  P  K  D  R  A  E  E  S  D  A  A  R  E  K  F  F  V  P  E  S  D  H  L  T  L  L  N  V  Y  Q  Q  W  K  A  N  Q  Y  R  G  D  W  C  N  D  H  Y  L  Q  V  K  G  L  R  K  A  R  E  V  R  S  Q  L  L  D  I  L  K  T  L  K  I  P  L  T  S  C  G  P  D  W  D  V  V  R  K  A  I  C  S  A  Y  F  H  N  A  A  R  L  K  G  V  G  E  Y  V  N  C  R  N  G  M  P  C  H  L  H  P  T  S  A  L  Y  G  L  G  Y  T  P  D  N  V  V  Y  H  E  L  I  L  T  S  K  E  Y  M  Q  C  V  T  A  V  E  P  H  W  L  A  E  L  G  P  M  F  F  S  V  K  D  S  D  T  S  M  L  E  H  K  K  K  Q  K  E  E  K  T  A  M  E  E  E  M  E  K  L  R  K  V  Q  A  E  A  D  R  R  N  K  E  K  E  K  E  K  R  A  K  E  L  Q  Q  V  S  M  P  G  L  K  K  G  S  T  T  Y  L  R  P  K  R  L  G  L  *  I  T  L  F  A  V  V  V  R  Y  L  L  *  *  F  L  S  Q  C  K  N  H  V  Q  F  L  A  Y  L  L  V  I  L  K  L  I  *  W  M  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="32" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="270670" stop="269465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGKMKVYNPRMGMDALQVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKSLKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLLMGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHYLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRKVQAEADRRNKEKEKEKRAKELQQVSMPGLKKGSTTYLRPKRLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="33" PGL_strand="-" PGL_start="275619" PGL_stop="271688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="275619" e_stop="275603"/>
            <exon e_start="275488" e_stop="275391"/>
            <exon e_start="275236" e_stop="275128"/>
            <exon e_start="273925" e_stop="273748"/>
            <exon e_start="273647" e_stop="273418"/>
            <exon e_start="273320" e_stop="273144"/>
            <exon e_start="271928" e_stop="271857"/>
            <exon e_start="271739" e_stop="271688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.986"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="275619" e_stop="275603" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="275602" i_stop="275489" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="275488" e_stop="275391" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="275390" i_stop="275237" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="275236" e_stop="275128" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.880" acc_prob="0.669">
            <gDNA_intron_boundary i_start="275127" i_stop="273926" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="273925" e_stop="273748" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.796" acc_prob="0.982">
            <gDNA_intron_boundary i_start="273747" i_stop="273648" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="273647" e_stop="273418" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="273417" i_stop="273321" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="273320" e_stop="273144" e_length="177"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="273143" i_stop="271929" i_length="1215"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="271928" e_stop="271857" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="271856" i_stop="271740" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="271739" e_stop="271688" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="275619" stop="275603"/>
              <exon start="275488" stop="275391"/>
              <exon start="275236" stop="275128"/>
              <exon start="273925" stop="273748"/>
              <exon start="273647" stop="273499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="275177" stop="275128"/>
              <exon start="273925" stop="273748"/>
              <exon start="273647" stop="273418"/>
              <exon start="273320" stop="273144"/>
              <exon start="271928" stop="271857"/>
              <exon start="271739" stop="271688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="273925" stop="273748"/>
              <exon start="273647" stop="273497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="33" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGTGCTCTGTCTGAG : GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG : GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG : GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG : ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGACAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTTGAGAAGAGTGCAGAGCAG : GTTGATGCGGATACTGCTACAGTGGGCGAGGATGGAGAGGTTGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTATCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAG : GTGGTTCGCGAAAACCAGGTGGTGGTGGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAG : TACCTTCATGAAGATGGCTATACAAGTAACGGGATTGTTGGTTGCACCCAAC</gDNA_template>
            <first_frame> E  V  L  C  L  R :   T  E  E  M  I  Q  M  V  P  L  K  I  R  M  K  R  L  L  K  V  C  V  *  R  W  S  I  I  Q  I  V  P   : G  M  T  A  K  K  V  V  Q  C  L  K  G  M  V  H  Q  H  F  *  V  M  R  H  L  S  R  R  K  R  W  N  W  P  K  N  W :   F  V  E  M  E  A  R  C  H  L  L  K  V  K  G  Y  H  S  S  L  Q  T  M  L  N  G  R  T  A  S  F  *  D  L  E  L  L  E  V  P  R  C  R  R  S  L  M  M  R  M  N  G  R  L  F  F  L  F  T  :  I  Q  S  L  P  F  W  M  E  E  L  F  S  P  S  K  L  S  R  *  C  Q  *  R  T  Q  L  Q  I  W  P  *  F  H  V  K  A  Q  L  *  F  G  K  Y  V  K  N  K  T  C  T  S  L  D  K  D  F  G  S  W  L  V  Q  N  S  E  I  S  L  V  L  R  R  V  Q  S  R :   L  M  R  I  L  L  Q  W  A  R  M  E  R  L  I  L  K  E  K  L  D  S  H  S  T  *  R  K  G  K  L  S  V  I  L  H  Y  Q  K  H  F  H  S  K  G  S  I  C  P  S  S  L  C  E  M  I  Y  C  R :   W  F  A  K  T  R  W  W  W  L  L  E  K  L  V  L  E  R  Q  H  S  *  L  S :   T  F  M  K  M  A  I  Q  V  T  G  L  L  V  A  P  N </first_frame>
            <second_frame>  R  C  S  V  *   : G  R  R  R  *  Y  K  W  C  L  *  R  S  E  *  R  D  Y  *  K  Y  A  F  R  D  G  V  *  F  R  S  C  L  :  V  *  P  R  R  R  *  Y  S  V  *  R  G  W  F  I  S  I  S  R  *  *  G  I  F  P  E  E  R  G  G  I  G  Q  K  T   : G  S  *  R  W  K  Q  D  V  T  C  S  K  *  K  V  I  T  A  H  C  R  Q  C  S  M  G  G  P  P  A  F  E  I  W  S  C  *  R  Y  R  G  A  D  G  V  *  *  *  G  *  T  E  G  Y  S  S  C  S  R :   Y  K  A  S  L  F  G  W  K  N  C  F  H  Q  A  S  *  A  D  N  A  N  K  G  P  N  F  R  Y  G  H  N  F  T  *  R  L  S  S  S  S  G  N  T  *  K  T  K  H  A  Q  V  S  T  K  I  L  G  A  G  W  F  K  T  R  R  Y  P  W  C  *  E  E  C  R  A   : G  *  C  G  Y  C  Y  S  G  R  G  W  R  G  *  F  *  R  R  S  *  I  L  T  A  L  K  E  R  G  S  C  Q  *  F  C  I  I  K  N  T  F  T  A  K  A  V  S  A  H  L  L  C  A  R  *  F  I  A   : G  G  S  R  K  P  G  G  G  G  C  W  R  N  W  F  W  K  D  N  T  A  N  S   : V  P  S  *  R  W  L  Y  K  *  R  D  C  W  L  H  P   </second_frame>
            <third_frame>   G  A  L  S  E  :  D  G  G  D  D  T  N  G  A  S  E  D  Q  N  E  E  I  T  E  S  M  R  L  E  M  E  Y  N  S  D  R  A  W :   Y  D  R  E  E  G  S  T  V  F  E  G  D  G  S  S  A  F  L  G  D  E  A  S  F  Q  K  K  E  V  E  L  A  K  K  L  :  V  R  R  D  G  S  K  M  S  L  A  Q  S  K  R  L  S  Q  L  T  A  D  N  A  Q  W  E  D  R  Q  L  L  R  S  G  A  V  R  G  T  E  V  Q  T  E  F  D  D  E  D  E  R  K  V  I  L  L  V  H   : D  T  K  P  P  F  L  D  G  R  I  V  F  T  K  Q  A  E  P  I  M  P  I  K  D  P  T  S  D  M  A  I  I  S  R  K  G  S  A  L  V  R  E  I  R  E  K  Q  N  M  H  K  S  R  Q  R  F  W  E  L  A  G  S  K  L  G  D  I  L  G  V  E  K  S  A  E  Q  :  V  D  A  D  T  A  T  V  G  E  D  G  E  V  D  F  K  G  E  A  R  F  S  Q  H  L  K  K  G  E  A  V  S  D  F  A  L  S  K  T  L  S  Q  Q  R  Q  Y  L  P  I  F  S  V  R  D  D  L  L  Q  :  V  V  R  E  N  Q  V  V  V  V  V  G  E  T  G  S  G  K  T  T  Q  L  T  Q  :  Y  L  H  E  D  G  Y  T  S  N  G  I  V  G  C  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="33" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="275617" stop="275603"/>
                    <exon start="275488" stop="275391"/>
                    <exon start="275236" stop="275128"/>
                    <exon start="273925" stop="273748"/>
                    <exon start="273647" stop="273418"/>
                    <exon start="273320" stop="273144"/>
                    <exon start="271928" stop="271857"/>
                    <exon start="271739" stop="271689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALSEDGGDDTNGASEDQNEEITESMRLEMEYNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAEPIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="34" PGL_strand="+" PGL_start="282625" PGL_stop="283243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="282625" e_stop="283243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="282625" e_stop="283243" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="282625" stop="282991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="282659" stop="283144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="282715" stop="283243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="34" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATCAGTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</gDNA_template>
            <first_frame> L  I  S  *  E  R  *  H  I  D  I  G  E  W  *  F  K  K  W  D  L  G  G  E  V  K  Q  R  Q  M  L  *  L  R  K  D  H  S  T  A  S  L  L  M  K  F  G  I  N  W  G  I  V  G  N  H  S  I  A  *  T  L  T  S  L  L  K  L  Y  G  L  S  S  L  I  K  K  W  W  G  E  M  I  T  G  Q  C  S  K  G  L  L  S  I  I  H  R  A  L  Q  C  P  G  I  S  A  R  R  L  L  M  R  C  G  K  I  F  S  R  G  *  K  *  I  M  L  I  R  E  A  R  R  G  N  *  L  *  V  R  *  L  W  R  I  S  W  S  R  L  E  *  L  P  S  R  P  K  A  R  E  F  R  V  *  F  L  G  L  I  Q  C  H  *  H  S  K  L  S  G  R  T  I  K  S  P  Q  C  N  R  Y  Q  N  S  S  I  N  N  N  S  R  I  Y  H  Q  F  L  </first_frame>
            <second_frame>  *  S  V  E  N  V  D  T  L  I  L  V  N  G  N  S  R  N  G  I  S  G  G  R  *  S  K  G  K  C  F  S  Y  A  R  I  T  L  Q  P  H  S  *  *  S  S  E  S  I  G  E  L  W  E  T  T  Q  *  H  E  P  *  R  V  C  *  N  C  M  D  Y  R  V  *  S  R  S  G  G  G  K  *  L  R  A  S  A  A  R  G  F  S  A  S  S  I  E  H  Y  N  V  Q  G  S  Q  Q  E  D  C  *  *  G  V  A  R  Y  S  A  G  G  K  N  R  *  C  *  *  E  K  P  G  E  A  T  N  F  R  *  D  N  S  G  G  F  L  G  Q  G  W  S  D  C  R  V  D  P  R  Q  E  N  F  G  F  S  F  W  G  *  F  N  V  I  D  T  A  S  S  V  D  A  L  S  N  P  R  N  A  T  G  T  R  T  A  A  S  T  T  T  A  E  Y  T  T  S  F  Y </second_frame>
            <third_frame>   D  Q  L  R  T  L  T  H  *  Y  W  *  M  V  I  Q  E  M  G  S  R  G  G  G  E  A  K  A  N  A  L  A  T  Q  G  S  L  Y  S  L  T  L  D  E  V  R  N  Q  L  G  N  C  G  K  P  L  N  S  M  N  L  D  E  F  V  K  T  V  W  T  I  E  S  N  Q  E  V  V  G  G  N  D  Y  G  P  V  Q  Q  G  A  S  Q  H  H  P  S  S  I  T  M  S  R  D  L  S  K  K  T  V  D  E  V  W  Q  D  I  Q  Q  G  V  K  I  D  N  V  D  K  R  S  Q  E  R  Q  L  T  L  G  E  I  T  L  E  D  F  L  V  K  A  G  V  I  A  E  S  T  Q  G  K  R  I  S  G  L  V  F  G  V  D  S  M  S  L  T  Q  Q  A  Q  W  T  H  Y  Q  I  P  A  M  Q  Q  V  P  E  Q  Q  H  Q  Q  Q  Q  Q  N  I  P  P  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="34" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="282663" stop="283241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVIQEMGSRGGGEAKANALATQGSLYSLTLDEVRNQLGNCGKPLNSMNLDEFVKTVWTIESNQEVVGGNDYGPVQQGASQHHPSSITMSRDLSKKTVDEVWQDIQQGVKIDNVDKRSQERQLTLGEITLEDFLVKAGVIAESTQGKRISGLVFGVDSMSLTQQAQWTHYQIPAMQQVPEQQHQQQQQNIPPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="35" PGL_strand="-" PGL_start="287926" PGL_stop="285574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="287926" e_stop="287532"/>
            <exon e_start="286920" e_stop="286796"/>
            <exon e_start="286080" e_stop="285574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.884"/>
          <exon-intron don_prob="0.416" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="287926" e_stop="287532" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="287531" i_stop="286921" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="286920" e_stop="286796" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.416" acc_prob="1.000">
            <gDNA_intron_boundary i_start="286795" i_stop="286081" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="286080" e_stop="285574" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287926" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287926" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287889" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287888" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="286056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287886" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287830" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287767" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287676" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="287675" stop="287532"/>
              <exon start="286920" stop="286796"/>
              <exon start="286080" stop="285640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433964" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="286914" stop="286796"/>
              <exon start="286080" stop="285724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="35" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG : GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG : GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</gDNA_template>
            <first_frame> E  K  V  R  D  D  G  K  S  K  E  D  N  I  F  L  F  R  *  P  E  P  P  P  T  S  N  L  H  R  P  I  S  E  S  G  N  P  N  L  K  F  D  E  L  T  Q  I  L  P  Q  E  T  P  C  F  P  F  S  P  I  P  F  P  F  S  H  M  G  F  T  Q  I  P  T  S  F  N  F  *  P  S  T  R  R  V  A  C  *  G  S  I  W  V  R  S  K  C  *  S  C  Q  V  F  S  F  F  F  F  D  C  Q  R  *  T  W  M  V  D  Q  S  Y  F  P  C  P  *  F  C  H  F  R :   W  G  S  S  L  C  F  S  S  F  G  *  D  Q  I  W  W  S  *  R  Q  P  Q  T  P  Y  M  Q  *  D  I  C  Y  L  G  S  *  D  S  I  P   : G  G  K  *  C  G  R  K  R  L  R  G  S  D  N  W  C  R  *  S  C  C  C  S  Q  P  P  W  N  C  P  C  S  S  K  C  *  S  G  A  K  Y  I  L  H  G  V  P  G  *  R  N  Q  L  Q  W  L  N  D  *  F  *  C  M  E  G  S  I  S  S  H  C  Y  I  L  M  V  A  P  I  R  Q  L  K  F  N  A  F  A  S  G  W  *  F  F  L  A  D  E  G  F  E  G  C  D  *  S  S  *  C  R  L  G  N  S  V  H  K  A  *  L  L  I  I  G  L  F  L  F  F  P  F  W  V  L  *  Q  K  D  V  S  S  D  I  Y  L  L  D  T  A  C  L  S  D  R  L  Y  I  *  K  Q  Y  L  S  S  *  N  L  A  </first_frame>
            <second_frame>  K  K  *  E  M  M  A  N  P  R  R  T  T  F  S  S  S  G  N  Q  N  H  H  Q  L  P  I  S  T  A  P  F  Q  N  Q  G  T  Q  I  S  S  L  M  N  S  L  K  S  F  L  K  K  P  H  A  F  P  F  L  L  S  L  F  L  F  L  T  W  V  S  L  R  F  Q  H  P  S  T  S  N  P  Q  R  E  E  W  H  A  K  V  Q  S  G  S  D  Q  N  A  N  L  V  R  F  S  A  S  S  S  S  I  A  K  D  K  R  G  W  L  I  N  P  I  S  L  A  L  D  S  A  I  S   : G  G  A  A  V  C  A  S  V  H  L  G  E  I  R  S  G  G  L  R  G  N  H  R  H  H  T  C  N  E  T  F  V  I  W  G  A  K  T  V  F  R  :  V  E  N  D  A  V  E  K  G  Y  A  E  V  I  I  G  A  D  E  V  A  V  A  V  S  P  L  G  T  A  H  A  L  V  N  V  D  P  G  R  S  T  Y  F  M  G  C  Q  D  S  V  I  N  Y  N  G  S  T  T  D  F  N  V  W  K  D  L  *  V  P  I  V  I  F  S  W  L  R  Q  *  G  N  *  S  L  M  R  L  H  Q  A  G  N  F  F  L  Q  M  R  V  L  K  G  V  I  S  L  A  S  V  D  *  E  T  V  Y  I  R  H  S  C  *  S  L  A  F  F  C  S  F  P  F  G  F  Y  D  K  K  M  *  A  Q  T  Y  I  Y  W  I  Q  L  A  C  P  T  G  F  I  Y  E  S  S  I  *  A  L  E  I  *  Q </second_frame>
            <third_frame>   K  S  E  R  *  W  Q  I  Q  G  G  Q  H  F  P  L  P  V  T  R  T  T  T  N  F  Q  S  P  P  P  H  F  R  I  R  E  P  K  S  Q  V  *  *  T  H  S  N  P  S  S  R  N  P  M  L  S  L  F  S  Y  P  F  S  F  F  S  H  G  F  H  S  D  S  N  I  L  Q  L  L  T  L  N  E  K  S  G  M  L  R  F  N  L  G  P  I  K  M  L  I  L  S  G  F  Q  L  L  L  L  R  L  P  K  I  N  V  D  G  *  S  I  L  F  P  L  P  L  I  L  P  F  Q  :  V  G  Q  Q  F  V  L  Q  F  I  W  V  R  S  D  L  V  V  L  E  A  T  T  D  T  I  H  A  M  R  H  L  L  F  G  E  L  R  Q  Y  S  G :   W  K  M  M  R  *  K  K  V  T  R  K  *  *  L  V  Q  M  K  L  L  L  Q  S  A  P  L  E  L  P  M  L  *  *  M  L  I  R  G  E  V  H  T  S  W  G  A  R  I  A  *  S  T  T  M  A  Q  R  L  I  L  M  Y  G  R  I  Y  K  F  P  L  L  Y  S  H  G  C  A  N  K  A  T  E  V  *  C  V  C  I  R  L  V  I  F  S  C  R  *  G  F  *  R  V  *  L  V  *  L  V  *  I  R  K  Q  C  T  *  G  I  A  A  N  H  W  P  F  F  V  L  S  L  L  G  F  M  T  K  R  C  E  L  R  H  I  S  T  G  Y  S  L  P  V  R  Q  A  L  Y  M  K  A  V  F  K  L  L  K  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="35" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="287916" stop="287532"/>
                    <exon start="286920" stop="286796"/>
                    <exon start="286080" stop="285877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMMANPRRTTFSSSGNQNHHQLPISTAPFQNQGTQISSLMNSLKSFLKKPHAFPFLLSLFLFLTWVSLRFQHPSTSNPQREEWHAKVQSGSDQNANLVRFSASSSSIAKDKRGWLINPISLALDSAISGGAAVCASVHLGEIRSGGLRGNHRHHTCNETFVIWGAKTVFRVENDAVEKGYAEVIIGADEVAVAVSPLGTAHALVNVDPGRSTYFMGCQDSVINYNGSTTDFNVWKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="36" PGL_strand="-" PGL_start="291423" PGL_stop="289010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="291423" e_stop="291199"/>
            <exon e_start="291073" e_stop="290986"/>
            <exon e_start="290855" e_stop="290770"/>
            <exon e_start="290669" e_stop="290562"/>
            <exon e_start="290072" e_stop="290028"/>
            <exon e_start="289933" e_stop="289845"/>
            <exon e_start="289217" e_stop="289174"/>
            <exon e_start="289069" e_stop="289010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="291423" e_stop="291199" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.991">
            <gDNA_intron_boundary i_start="291198" i_stop="291074" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="291073" e_stop="290986" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="290985" i_stop="290856" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="290855" e_stop="290770" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.756">
            <gDNA_intron_boundary i_start="290769" i_stop="290670" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="290669" e_stop="290562" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="290561" i_stop="290073" i_length="489"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="290072" e_stop="290028" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.972">
            <gDNA_intron_boundary i_start="290027" i_stop="289934" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="289933" e_stop="289845" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="289844" i_stop="289218" i_length="627"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="289217" e_stop="289174" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="289173" i_stop="289070" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="0.933">
            <gDNA_exon_boundary e_start="289069" e_stop="289010" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="291423" stop="291199"/>
              <exon start="291073" stop="290986"/>
              <exon start="290855" stop="290770"/>
              <exon start="290669" stop="290562"/>
              <exon start="290072" stop="290028"/>
              <exon start="289933" stop="289845"/>
              <exon start="289217" stop="289174"/>
              <exon start="289069" stop="289010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="36" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG : ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG : GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA : GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG : GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG : TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT : ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG : GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCC</gDNA_template>
            <first_frame> E  T  L  H  K  H  N  K  I  K  Q  D  K  N  N  F  Q  E  A  V  E  G  S  P  D  E  S  N  G  L  N  V  S  Q  N  I  N  P  S  E  R  R  A  P  S  S  Q  K  S  L  L  M  N  W  P  L  M  S  S  I  I  V  Y  C  V  F  Q  L  H  D  I  A  Y  L  E  :  I  F  S  L  W  A  V  S  P  R  T  L  G  G  L  S  F  T  T  S  D  V  G  Q  V  L  A  I  T   : G  I  G  L  L  L  F  Q  L  L  V  Y  P  L  V  E  R  I  T  G  P  V  M  I  S  R  I  G  A  :  V  L  S  I  P  L  L  A  S  Y  P  Y  I  A  L  L  T  G  F  G  L  S  I  A  L  N  C  A  S  M  L  K  N  I  L  S  :  V  S  I  T  T  G  L  L  I  M  Q  N  R  A  V  :  S  Q  E  Q  R  G  A  A  N  G  I  S  M  S  S  M  S  L  F  K  T  I  G  P  A  A  G  G  S  L :   L  S  W  S  Q  R  R  L  D  A  D  I  L  P   : G  D  Q  L  V  F  F  V  L  N  A  I  E  L  L  G  L  L  L  T  </first_frame>
            <second_frame>  R  H  F  T  S  I  T  K  *  N  K  I  K  I  T  F  K  R  L  L  K  D  L  Q  M  N  Q  M  D  *  M  C  L  R  T  *  I  L  L  N  A  E  P  L  A  L  K  K  A  F  *  *  I  G  P  *  C  L  L  L  L  S  T  V  Y  S  S  S  T  I  *  P  I  W  R :   Y  F  H  S  G  L  L  V  Q  G  P  L  G  V  *  A  S  Q  L  L  M  L  D  K  F  L  P  S  Q  :  A  L  V  C  Y  S  F  S  C  L  F  I  H  W  W  K  G  L  L  G  L  S  *  F  L  G  S  V  Q :   F  *  A  Y  L  Y  W  L  A  T  H  I  *  L  Y  *  L  V  L  A  S  P  *  L  S  T  V  H  L  C  *  R  I  F  S  R :   Y  Q  L  Q  L  A  Y  *  S  C  R  I  E  L  C :   P  R  S  K  E  E  L  Q  M  A  F  Q  C  P  Q  C  R  F  S  R  Q  L  A  L  Q  P  G  A  H   : Y  C  P  G  H  N  G  V  *  M  L  I  F  C  L  :  V  I  S  W  C  S  L  F  S  T  P  L  S  C  S  A  Y  F  *  P </second_frame>
            <third_frame>   D  T  S  Q  A  *  Q  N  K  T  R  *  K  *  L  S  R  G  C  *  R  I  S  R  *  I  K  W  I  K  C  V  S  E  H  K  S  F  *  T  Q  S  P  *  L  S  K  K  P  S  D  E  L  A  L  N  V  F  Y  Y  C  L  L  C  I  P  A  P  R  Y  S  L  F  G   : D  I  F  T  L  G  C  *  S  K  D  P  W  G  F  K  L  H  N  F  *  C  W  T  S  S  C  H  H  R :   H  W  F  A  T  L  S  A  A  C  L  S  T  G  G  K  D  Y  W  A  C  H  D  F  S  D  R  C   : S  F  K  H  T  F  I  G  *  L  P  I  Y  S  F  I  N  W  F  W  P  L  H  S  S  Q  L  C  I  Y  V  K  E  Y  S  L   : G  I  N  Y  N  W  L  T  N  H  A  E  *  S  C   : V  P  G  A  K  R  S  C  K  W  H  F  N  V  L  N  V  A  F  Q  D  N  W  P  C  S  R  G  L  I  :  I  V  L  V  T  T  A  S  R  C  *  Y  S  A  W :   *  S  V  G  V  L  C  S  Q  R  H  *  V  A  R  P  T  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="-"/>
                <serials PGL_serial="36" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="291423" stop="291199"/>
                    <exon start="291073" stop="290986"/>
                    <exon start="290855" stop="290770"/>
                    <exon start="290669" stop="290562"/>
                    <exon start="290072" stop="290028"/>
                    <exon start="289933" stop="289845"/>
                    <exon start="289217" stop="289174"/>
                    <exon start="289069" stop="289011"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETLHKHNKIKQDKNNFQEAVEGSPDESNGLNVSQNINPSERRAPSSQKSLLMNWPLMSSIIVYCVFQLHDIAYLEIFSLWAVSPRTLGGLSFTTSDVGQVLAITGIGLLLFQLLVYPLVERITGPVMISRIGAVLSIPLLASYPYIALLTGFGLSIALNCASMLKNILSVSITTGLLIMQNRAVSQEQRGAANGISMSSMSLFKTIGPAAGGSLLSWSQRRLDADILPGDQLVFFVLNAIELLGLLLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="37" PGL_strand="+" PGL_start="312032" PGL_stop="320506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="312032" e_stop="312278"/>
            <exon e_start="313266" e_stop="313327"/>
            <exon e_start="313878" e_stop="313965"/>
            <exon e_start="314069" e_stop="314130"/>
            <exon e_start="314224" e_stop="314320"/>
            <exon e_start="314462" e_stop="314872"/>
            <exon e_start="315666" e_stop="316514"/>
            <exon e_start="316664" e_stop="316789"/>
            <exon e_start="316866" e_stop="316979"/>
            <exon e_start="317086" e_stop="317172"/>
            <exon e_start="317749" e_stop="317884"/>
            <exon e_start="317963" e_stop="318005"/>
            <exon e_start="320201" e_stop="320506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="0.977"/>
          <exon-intron don_prob="0.978" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.745" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.959"/>
          <exon-intron don_prob="0.755" acc_prob="0.708" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="312032" e_stop="312278" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="312279" i_stop="313265" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="313266" e_stop="313327" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.835">
            <gDNA_intron_boundary i_start="313328" i_stop="313877" i_length="550"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="313878" e_stop="313965" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="313966" i_stop="314068" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="314069" e_stop="314130" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.745" acc_prob="0.939">
            <gDNA_intron_boundary i_start="314131" i_stop="314223" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="314224" e_stop="314320" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="314321" i_stop="314461" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="314462" e_stop="314872" e_length="411"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="314873" i_stop="315665" i_length="793"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="315666" e_stop="316514" e_length="849"/>
          </exon>
          <intron i_serial="7" don_prob="0.755" acc_prob="0.708">
            <gDNA_intron_boundary i_start="316515" i_stop="316663" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="316664" e_stop="316789" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="316790" i_stop="316865" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="316866" e_stop="316979" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.914" acc_prob="0.964">
            <gDNA_intron_boundary i_start="316980" i_stop="317085" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="317086" e_stop="317172" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.943">
            <gDNA_intron_boundary i_start="317173" i_stop="317748" i_length="576"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="317749" e_stop="317884" e_length="136"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="317885" i_stop="317962" i_length="78"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="317963" e_stop="318005" e_length="43"/>
          </exon>
          <intron i_serial="12" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="318006" i_stop="320200" i_length="2195"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="320201" e_stop="320506" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="312032" stop="312278"/>
              <exon start="313266" stop="313327"/>
              <exon start="313878" stop="313965"/>
              <exon start="314069" stop="314130"/>
              <exon start="314224" stop="314320"/>
              <exon start="314462" stop="314584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="312032" stop="312278"/>
              <exon start="313266" stop="313327"/>
              <exon start="313878" stop="313965"/>
              <exon start="314069" stop="314130"/>
              <exon start="314224" stop="314285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="312058" stop="312278"/>
              <exon start="313266" stop="313327"/>
              <exon start="313878" stop="313965"/>
              <exon start="314069" stop="314130"/>
              <exon start="314224" stop="314281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="312118" stop="312278"/>
              <exon start="313266" stop="313327"/>
              <exon start="313878" stop="313965"/>
              <exon start="314069" stop="314130"/>
              <exon start="314224" stop="314305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="314302" stop="314320"/>
              <exon start="314462" stop="314872"/>
              <exon start="315666" stop="315928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="314769" stop="314872"/>
              <exon start="315666" stop="315786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="315683" stop="316259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="315926" stop="316482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="316102" stop="316514"/>
              <exon start="316664" stop="316789"/>
              <exon start="316866" stop="316979"/>
              <exon start="317086" stop="317172"/>
              <exon start="317749" stop="317815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="316687" stop="316789"/>
              <exon start="316866" stop="316979"/>
              <exon start="317086" stop="317172"/>
              <exon start="317749" stop="317884"/>
              <exon start="317963" stop="318005"/>
              <exon start="320201" stop="320399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="316745" stop="316789"/>
              <exon start="316866" stop="316979"/>
              <exon start="317086" stop="317172"/>
              <exon start="317749" stop="317884"/>
              <exon start="317963" stop="318005"/>
              <exon start="320201" stop="320506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="37" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG : GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA : TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG : CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG : CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAG : AATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATAATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGTGGTGATCCATTCAGGTCAGTCGCACAGAGCCCCAACTTCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAG : AGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC : TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG : AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG : ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG : CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG : GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC : GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</gDNA_template>
            <first_frame> R  E  R  A  A  S  C  L  S  L  H  S  S  L  D  K  I  Q  N  P  L  L  K  T  L  V  F  F  N  Q  F  P  P  K  L  F  G  E  I  Q  F  F  N  W  G  K  *  T  Y  K  H  E  *  Q  E  R  R  R  E  E  R  E  D  N  K  R  A  S  Q  A  P  S  Q  S  Q  M  H  Q  L  Q  *  L   : G  S  P  V  C  V  H  K  L  L  D  L  C  L  H  D  M  Q  R  N  T  :  S  *  V  Y  S  P  C  E  V  S  F  H  V  *  V  Y  F  P  R  S  G  S  S  S  T  G  W  *  S   : A  G  Q  R  D  I  F  K  K  L  G  P  S  K  S  V  A  S  *  *  Q  :  Q  C  *  *  S  E  G  I  Y  K  D  R  L  C  *  *  K  I  C  W  G  A  V  L  *  *  T  S  *  R  Y  P   : E  F  E  K  P  R  R  *  Y  E  E  S  K  F  L  S  F  L  F  S  K  S  T  I  *  L  S  V  *  R  T  T  L  W  E  K  C  T  S  T  H  *  K  A  R  I  R  P  G  T  L  *  R  K  G  V  E  F  L  E  S  *  S  F  K  *  *  Y  V  *  *  *  V  W  *  *  R  I  *  S  Q  S  F  R  L  L  C  V  *  W  W  *  S  I  Q  V  S  R  T  E  P  Q  L  P  E  R  H  R  K  S  L  V  *  H  L  K  G  Y  F  I  R  R  C  T  A  C  Q  E  R  C  W  K  N  I  T  S  T   : E  N  C  I  F  W  K  F  *  I  I  R  Q  Q  F  L  V  I  Q  V  C  K  F  C  L  F  S  G  C  C  F  R  I  K  S  N  N  R  D  S  L  *  *  I  V  N  F  P  L  F  A  T  I  I  G  T  R  K  S  R  W  P  *  S  I  Q  C  S  L  S  S  S  K  R  S  T  F  S  F  N  K  I  S  S  A  S  V  I  I  S  A  I  H  F  C  W  S  N  W  *  F  T  S  T  I  A  H  S  P  T  F  I  F  G  L  F  L  R  G  A  K  P  A  F  S  C  K  C  *  *  K  T  I  M  *  S  H  F  Q  K  *  R  M  G  N  I  *  Y  A  A  A  C  S  N  N  R  H  R  T  V  H  P  G  T  N  T  C  L  W  P  *  F  F  *  H  F  T  *  K  D  T  A  T  I  G  H  *  E  V  I  G  C  G  *  W  M  G  N  I  *  C  A  S  A  R  D  T  H  W  K  *  *  L  Y  L  Q  H  D  S  I  K  G  *  C  S  I  E  F  G  P  N  F  L  R  H  A  M  A  I  T  Y  G  I  C  P  S  W  A  S  R  *  R  L  H  C  L  C  I  R  F  I  N  A  C  S  I  S  W  R  C  A  E  C  *  S  N  S  K  C  K  K  Y  *   : L  V  E  C  L  *  C  F  *  *  P  L  S  S  Q  E  F  A  *  *  *  G  T  S  C  N  E  P  *  S  S  *  *  S  V  H  G  L  K  R  S  R   : E  C  S  D  R  S  K  S  K  S  C  A  G  *  W  I  S  Y  Y  Q  F  S  I  I  C  Q  C  L  V  I  W  I  V  H  S  S  C  S   : D  R  S  A  F  T  C  K  *  A  E  V  Q  Q  P  I  *  S  P  L  R  C  *  H  G  M  Q  Q  Y   : A  A  V  L  G  H  E  L  I  T  G  C  I  A  K  *  W  D  V  I  F  F  C  W  W  C  D  R  I  L  V  S  S  E  P  S  N  S  L  W  S  C  W  T  A  W :   D  I  I  C  F  L  T  T  S  W  Q  S  N  I  :  E  C  A  D  T  R  S  S  C  C  Y  W  R  K  S  I  C  I  G  L  C  I  Q  L  V  V  G  S  A  R  S  S  F  Q  L  L  D  S  Y  V  F  H  V  C  I  V  K  K  R  E  *  E  T  T  R  Q  K  L  P  N  F  K  G  L  P  F  L  V  E  A  Y  S  V  F  *  Y  Y  G  *  C  D  Y  G  *  N  V  L  R  M  S  F  L  A  T  L  A  Y  *  F  S  C  Q </first_frame>
            <second_frame>  E  R  E  L  L  H  A  S  L  F  I  P  P  W  T  K  F  K  I  H  Y  L  K  P  *  F  F  S  I  N  F  P  Q  S  C  L  G  K  F  N  F  S  I  G  G  N  K  P  T  S  M  S  S  R  R  E  E  E  R  N  E  K  I  I  R  G  L  L  K  L  P  P  N  R  K  C  I  N  C  N  S  L  :  G  P  Q  Y  V  C  T  N  F  W  T  F  V  C  M  T  C  S  G  I  H :   R  E  F  T  H  R  V  K  S  V  S  M  S  K  F  T  S  Q  E  V  E  A  L  Q  Q  G  G  N  Q  :  R  A  R  E  I  Y  L  K  S  W  D  P  Q  S  Q  W  L  P  N  N  S :   N  V  D  K  V  R  E  F  I  K  T  V  Y  V  D  K  K  Y  A  G  A  Q  S  S  D  R  P  P  R  D  I  Q  :  N  L  R  N  H  D  D  D  M  R  R  A  S  S  Y  H  S  Y  S  Q  S  P  P  Y  D  F  Q  Y  E  E  R  R  Y  G  K  N  A  P  A  L  T  R  K  P  G  S  D  R  G  L  Y  E  G  K  V  S  S  F  L  S  P  S  R  L  S  D  N  M  Y  D  D  R  F  G  N  E  G  S  N  P  R  A  S  D  Y  S  V  S  S  G  G  D  P  F  R  S  V  A  Q  S  P  N  F  Q  R  G  I  G  S  P  L  C  D  T  S  R  D  I  S  Y  E  D  V  R  H  V  K  K  D  A  G  R  I  L  R  A  Q  :  R  T  A  S  S  G  S  F  E  S  F  D  S  N  S  L  S  F  K  S  V  N  S  V  C  L  A  D  A  V  S  E  S  N  Q  T  I  E  T  H  S  S  K  L  S  T  F  P  S  L  Q  R  S  S  G  P  G  N  P  D  G  P  D  L  F  N  A  P  S  V  P  Q  N  A  P  P  S  V  S  T  K  S  R  L  P  V  S  S  F  Q  P  S  I  S  A  G  P  I  G  N  S  H  Q  P  S  L  T  L  P  P  S  S  L  D  F  F  S  E  V  P  N  L  P  S  A  V  S  A  D  E  K  P  S  C  E  V  T  S  K  N  E  G  W  A  T  F  D  M  Q  R  H  A  A  T  T  G  I  E  Q  F  T  L  A  P  T  P  A  Y  G  H  N  S  F  D  I  L  P  E  K  T  Q  Q  Q  L  V  T  E  K  S  L  D  V  D  D  G  W  A  T  F  D  V  P  Q  H  V  T  L  T  G  S  N  N  F  T  S  N  T  I  Q  L  K  G  D  A  Q  S  N  S  D  P  T  F  S  V  M  Q  W  P  S  P  M  E  S  A  P  H  G  P  A  V  R  D  S  T  A  C  A  L  D  L  S  M  P  A  P  F  H  G  G  V  L  N  V  E  V  T  P  S  A  R  S  T  D  :  L  W  S  A  F  D  V  S  N  D  H  L  A  L  K  S  L  P  N  S  K  E  Q  V  V  M  N  H  D  L  V  D  D  Q  Y  M  G  L  R  G  V  E  :  N  A  V  T  G  Q  S  Q  R  A  V  L  D  S  G  Y  P  I  T  S  F  P  S  Y  V  S  A  S  S  S  G  L  S  T  L  P  V  A  :  T  G  V  H  S  H  A  N  E  Q  K  S  N  N  P  F  D  L  P  Y  D  A  D  M  E  C  S  N  M  :  P  Q  Y  W  D  M  S  S  L  Q  A  A  L  P  S  D  G  M  S  S  S  F  V  G  G  V  T  E  S  W  F  P  Q  N  P  A  T  A  Y  G  P  A  G  Q  H   : G  T  L  F  V  S  S  Q  P  A  G  N  Q  I  S :   N  V  P  T  H  G  Q  V  A  A  I  G  G  N  P  F  A  *  D  C  V  F  N  *  L  L  D  Q  L  D  H  H  F  N  F  *  I  P  M  Y  F  M  F  V  L  L  K  K  E  N  E  R  Q  L  G  R  N  Y  Q  I  S  K  A  C  L  F  L  L  R  P  T  V  C  S  D  T  M  V  D  V  I  M  A  E  M  F  *  G  C  P  S  W  L  L  W  R  I  D  F  L  V   </second_frame>
            <third_frame>   R  E  S  C  F  M  P  L  S  S  F  L  L  G  Q  N  S  K  S  I  T  *  N  P  S  F  F  Q  S  I  S  P  K  V  V  W  G  N  S  I  F  Q  L  G  E  I  N  L  Q  A  *  V  A  G  E  K  K  R  G  T  R  R  *  *  E  G  F  S  S  S  L  P  I  A  N  A  S  T  A  I  A  W :   V  P  S  M  C  A  Q  T  F  G  P  L  S  A  *  H  A  A  E  Y   : I  V  S  L  L  T  V  *  S  Q  F  P  C  L  S  L  L  P  K  K  W  K  L  F  N  R  V  V  I  S :   G  P  E  R  Y  I  *  K  V  G  T  L  K  V  S  G  F  L  I  T   : A  M  L  I  K  *  G  N  L  *  R  P  S  M  L  I  K  N  M  L  G  R  S  P  L  I  D  L  L  E  I  S  R :   I  *  E  T  T  T  M  I  *  G  E  Q  V  L  I  I  P  I  L  K  V  H  H  M  T  F  S  M  K  N  D  V  M  G  K  M  H  Q  H  S  L  E  S  Q  D  Q  T  G  D  F  M  K  E  R  C  R  V  S  *  V  L  V  V  *  V  I  I  C  M  M  I  G  L  V  M  K  D  L  I  P  E  L  Q  I  T  L  C  L  V  V  V  I  H  S  G  Q  S  H  R  A  P  T  S  R  E  A  S  E  V  P  C  V  T  P  Q  G  I  F  H  T  K  M  Y  G  M  S  R  K  M  L  E  E  Y  Y  E  H  R :   E  L  H  L  L  E  V  L  N  H  S  T  A  I  P  C  H  S  S  L  *  I  L  F  V  *  R  M  L  F  Q  N  Q  I  K  Q  *  R  L  T  L  V  N  C  Q  L  S  P  L  C  N  D  H  R  D  P  E  I  Q  M  A  L  I  Y  S  M  L  P  Q  F  L  K  T  L  H  L  Q  F  Q  Q  N  L  V  C  Q  C  H  H  F  S  H  P  F  L  L  V  Q  L  V  I  H  I  N  H  R  S  L  S  H  L  H  L  W  T  F  S  Q  R  C  Q  T  C  L  Q  L  *  V  L  M  K  N  H  H  V  K  S  L  P  K  M  K  D  G  Q  H  L  I  C  S  G  M  Q  Q  Q  Q  A  S  N  S  S  P  W  H  Q  H  L  L  M  A  I  I  L  L  T  F  Y  L  K  R  H  S  N  N  W  S  L  R  S  H  W  M  W  M  M  D  G  Q  H  L  M  C  L  S  T  *  H  S  L  E  V  I  T  L  P  P  T  R  F  N  *  R  V  M  L  N  R  I  R  T  Q  L  S  P  S  C  N  G  H  H  L  W  N  L  P  L  M  G  Q  P  L  E  T  P  L  L  V  H  *  I  Y  Q  C  L  L  H  F  M  E  V  C  *  M  L  K  *  L  Q  V  Q  E  V  L  T :   C  G  V  P  L  M  F  L  M  T  T  *  L  S  R  V  C  L  I  V  R  N  K  L  *  *  T  M  I  *  L  M  I  S  T  W  A  *  E  E  *  R :   M  Q  *  Q  V  K  V  K  E  L  C  W  I  V  D  I  L  L  P  V  F  H  H  M  S  V  P  R  H  L  D  C  P  L  F  L  *  R :   Q  E  C  I  H  M  Q  M  S  R  S  P  T  T  H  L  I  S  L  T  M  L  T  W  N  A  A  I  C :   R  S  T  G  T  *  A  H  Y  R  L  H  C  Q  V  M  G  C  H  L  L  L  L  V  V  *  P  N  L  G  F  L  R  T  Q  Q  Q  L  M  V  L  L  D  S  M  :  G  H  Y  L  F  P  H  N  Q  L  A  I  K  Y   : R  M  C  R  H  T  V  K  L  L  L  L  A  E  I  H  L  H  R  I  V  Y  S  T  S  C  W  I  S  *  I  I  I  S  T  F  R  F  L  C  I  S  C  L  Y  C  *  K  K  R  M  R  D  N  *  A  E  I  T  K  F  Q  R  L  A  F  S  C  *  G  L  Q  C  V  L  I  L  W  L  M  *  L  W  L  K  C  F  E  D  V  L  L  G  Y  F  G  V  L  I  F  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="37" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="312108" stop="312278"/>
                    <exon start="313266" stop="313327"/>
                    <exon start="313878" stop="313965"/>
                    <exon start="314069" stop="314130"/>
                    <exon start="314224" stop="314320"/>
                    <exon start="314462" stop="314872"/>
                    <exon start="315666" stop="316514"/>
                    <exon start="316664" stop="316789"/>
                    <exon start="316866" stop="316979"/>
                    <exon start="317086" stop="317172"/>
                    <exon start="317749" stop="317884"/>
                    <exon start="317963" stop="318005"/>
                    <exon start="320201" stop="320255"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2298</number_coding_nucleotides>
                  <number_encoded_amino_acids>766</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSINFPQSCLGKFNFSIGGNKPTSMSSRREEERNEKIIRGLLKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQQGGNQRAREIYLKSWDPQSQWLPNNSNVDKVREFIKTVYVDKKYAGAQSSDRPPRDIQNLRNHDDDMRRASSYHSYSQSPPYDFQYEERRYGKNAPALTRKPGSDRGLYEGKVSSFLSPSRLSDNMYDDRFGNEGSNPRASDYSVSSGGDPFRSVAQSPNFQRGIGSPLCDTSRDISYEDVRHVKKDAGRILRAQRTASSGSFESFDSNSLSFKSVNSVCLADAVSESNQTIETHSSKLSTFPSLQRSSGPGNPDGPDLFNAPSVPQNAPPSVSTKSRLPVSSFQPSISAGPIGNSHQPSLTLPPSSLDFFSEVPNLPSAVSADEKPSCEVTSKNEGWATFDMQRHAATTGIEQFTLAPTPAYGHNSFDILPEKTQQQLVTEKSLDVDDGWATFDVPQHVTLTGSNNFTSNTIQLKGDAQSNSDPTFSVMQWPSPMESAPHGPAVRDSTACALDLSMPAPFHGGVLNVEVTPSARSTDLWSAFDVSNDHLALKSLPNSKEQVVMNHDLVDDQYMGLRGVENAVTGQSQRAVLDSGYPITSFPSYVSASSSGLSTLPVATGVHSHANEQKSNNPFDLPYDADMECSNMPQYWDMSSLQAALPSDGMSSSFVGGVTESWFPQNPATAYGPAGQHGTLFVSSQPAGNQISNVPTHGQVAAIGGNPFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="38" PGL_strand="+" PGL_start="321772" PGL_stop="322676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="321772" e_stop="321803"/>
            <exon e_start="321888" e_stop="322676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="321772" e_stop="321803" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="321804" i_stop="321887" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="321888" e_stop="322676" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="321772" stop="321803"/>
              <exon start="321888" stop="322676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="38" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTATTCAAATTGATCTATATTTCAACCCTG : GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</gDNA_template>
            <first_frame> D  Y  S  N  *  S  I  F  Q  P  W :   N  F  T  I  V  F  E  L  I  C  K  G  G  I  F  I  L  C  L  D  L  E  G  N  *  F  *  F  I  F  L  T  R  T  R  W  V  Q  *  R  K  I  R  Y  S  D  P  I  S  E  E  V  A  S  F  *  V  L  G  C  E  G  L  K  L  K  *  G  K  L  *  S  L  L  L  K  C  V  I  G  Q  L  G  I  I  H  S  L  W  V  C  C  V  S  W  Y  F  C  T  D  H  F  L  L  C  F  Q  S  W  C  L  S  P  L  F  L  F  A  L  L  H  C  L  E  L  Y  *  V  M  V  S  L  I  Y  L  Y  L  N  G  K  K  T  Q  L  I  I  L  C  L  W  K  H  E  M  L  F  L  L  R  V  T  I  V  T  S  P  R  D  I  V  I  K  R  G  I  K  *  T  N  Q  R  V  V  R  F  I  G  V  K  D  L  V  I  I  L  L  *  L  V  E  F  *  L  V  E  L  L  G  K  W  Q  G  S  F  M  S  I  K  M  K  T  N  L  V  M  L  N  L  R  R  T  S  I  L  L  L  R  R  V  M  K  R  A  L  S  L  I  M  T  N  Q  L  I  P  L  I  L  G  G  L  I  L   </first_frame>
            <second_frame>  T  I  Q  I  D  L  Y  F  N  P   : G  I  L  Q  L  C  L  N  *  F  V  K  V  G  F  L  F  F  V  L  I  *  K  G  I  D  S  S  S  Y  F  *  Q  E  L  G  G  Y  S  E  E  K  L  D  I  Q  I  P  F  L  R  K  L  L  H  F  R  Y  W  V  V  K  D  *  S  *  N  E  E  S  C  N  L  Y  Y  *  S  V  L  *  D  S  *  E  S  S  I  P  C  G  Y  V  V  F  L  G  I  S  V  Q  I  I  S  F  C  V  F  N  L  G  V  C  L  P  Y  S  C  L  H  C  C  T  A  W  N  F  T  K  L  W  S  A  *  Y  T  C  I  *  M  G  R  K  H  N  *  S  Y  C  A  F  G  N  T  R  C  Y  S  C  *  E  *  Q  *  L  L  H  R  E  I  *  *  S  R  E  G  *  S  R  P  I  N  A  *  *  G  S  *  G  *  K  I  W  *  S  F  C  S  N  W  W  S  F  S  W  W  S  Y  W  A  S  G  K  G  V  L  *  A  *  K  *  R  Q  I  *  *  C  *  T  Y  G  G  P  V  F  S  Y  F  E  G  *  *  R  E  R  *  V  *  *  *  Q  I  S  *  F  L  *  F  *  E  G  *  F  *  </second_frame>
            <third_frame>   L  F  K  L  I  Y  I  S  T  L  :  E  F  Y  N  C  V  *  I  D  L  *  R  W  D  F  Y  S  L  S  *  S  R  R  E  L  I  L  V  H  I  F  D  K  N  *  V  G  T  V  K  K  N  *  I  F  R  S  H  F  *  G  S  C  F  I  L  G  I  G  L  *  R  I  E  V  K  M  R  K  A  V  I  F  T  I  E  V  C  Y  R  T  V  R  N  H  P  F  L  V  G  M  L  C  F  L  V  F  L  Y  R  S  F  P  F  V  F  S  I  L  V  S  V  S  P  I  L  V  C  T  A  A  L  L  G  T  L  L  S  Y  G  Q  P  N  I  P  V  F  E  W  E  E  N  T  T  D  H  I  V  P  L  E  T  R  D  A  I  L  V  E  S  D  N  S  Y  F  T  E  R  Y  S  D  Q  E  R  D  K  V  D  Q  S  T  R  S  E  V  H  R  G  K  R  F  G  D  H  S  A  L  I  G  G  V  L  V  G  G  V  T  G  Q  V  A  R  E  F  Y  E  H  K  N  E  D  K  F  S  D  A  E  L  T  E  D  Q  Y  S  P  T  S  K  G  N  E  E  S  V  E  F  D  N  D  K  S  V  D  S  F  D  S  R  R  A  N  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="38" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="322071" stop="322676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEVKMRKAVIFTIEVCYRTVRNHPFLVGMLCFLVFLYRSFPFVFSILVSVSPILVCTAALLGTLLSYGQPNIPVFEWEENTTDHIVPLETRDAILVESDNSYFTERYSDQERDKVDQSTRSEVHRGKRFGDHSALIGGVLVGGVTGQVAREFYEHKNEDKFSDAELTEDQYSPTSKGNEESVEFDNDKSVDSFDSRRANFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="39" PGL_strand="+" PGL_start="323449" PGL_stop="324008"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="323449" e_stop="324008"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="323449" e_stop="324008" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="323449" stop="324008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="323465" stop="323968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="39" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</gDNA_template>
            <first_frame> K  I  P  V  L  D  L  T  L  F  L  M  *  W  L  L  K  E  Q  V  I  H  H  Y  K  G  T  P  A  I  S  V  I  P  K  *  V  L  F  L  K  Q  S  H  R  A  Q  L  K  I  W  N  T  R  T  S  M  R  K  M  *  K  T  R  T  *  M  K  N  W  K  A  K  T  *  Q  M  N  I  S  S  R  N  Q  S  *  Y  L  R  *  S  M  L  P  R  I  L  D  M  E  A  N  P  P  K  K  *  N  V  W  S  *  V  H  L  I  R  G  I  L  N  S  M  T  L  M  L  H  Y  Q  M  W  K  I  I  M  I  W  Y  Q  M  Y  S  M  K  K  Q  Q  P  A  P  W  Y  L  I  R  L  K  F  V  Q  S  Q  Q  H  L  N  K  N  A  V  V  S  Q  A  P  P  P  H  Q  K  *  V  K  R  S   </first_frame>
            <second_frame>  R  Y  P  F  *  T  L  L  C  S  *  C  D  G  C  *  R  N  K  L  F  T  I  T  K  A  P  Q  R  S  Q  *  F  Q  S  K  F  C  S  *  N  R  V  T  G  L  N  *  R  S  G  I  Q  E  P  Q  *  G  R  C  R  R  Q  E  P  E  *  R  T  G  R  Q  R  P  D  R  *  T  Y  L  Q  G  T  K  A  D  I  *  D  R  A  C  Y  R  G  Y  W  T  W  K  P  I  L  R  R  S  R  M  F  G  P  R  C  I  *  *  E  G  Y  *  T  R  *  H  *  C  Y  T  T  K  C  G  K  S  S  *  F  G  T  K  C  I  P  *  R  N  S  S  Q  L  H  G  T  *  S  V  *  N  L  F  K  V  S  N  I  *  T  K  M  Q  *  S  V  K  L  L  L  L  I  R  S  R  *  K  D  L  </second_frame>
            <third_frame>   D  T  R  F  R  P  Y  F  V  P  D  V  M  A  A  E  G  T  S  Y  S  P  L  Q  R  H  P  S  D  L  S  D  S  K  V  S  S  V  L  E  T  E  S  Q  G  S  I  E  D  L  E  Y  K  N  L  N  E  E  D  V  E  D  K  N  L  N  E  E  L  E  G  K  D  L  T  D  E  H  I  F  K  E  P  K  L  I  S  K  I  E  H  A  T  E  D  I  G  H  G  S  Q  S  S  E  E  V  E  C  L  V  L  G  A  S  D  K  R  D  I  E  L  D  D  T  D  V  T  L  P  N  V  E  N  H  H  D  L  V  P  N  V  F  H  E  E  T  A  A  S  S  M  V  L  D  P  S  K  I  C  S  K  S  A  T  S  E  Q  K  C  S  S  Q  S  S  S  S  S  S  S  E  V  G  E  K  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="39" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="323451" stop="324008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTRFRPYFVPDVMAAEGTSYSPLQRHPSDLSDSKVSSVLETESQGSIEDLEYKNLNEEDVEDKNLNEELEGKDLTDEHIFKEPKLISKIEHATEDIGHGSQSSEEVECLVLGASDKRDIELDDTDVTLPNVENHHDLVPNVFHEETAASSMVLDPSKICSKSATSEQKCSSQSSSSSSSEVGEKIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="40" PGL_strand="+" PGL_start="324022" PGL_stop="326541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="324022" e_stop="324482"/>
            <exon e_start="326476" e_stop="326541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="324022" e_stop="324482" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="324483" i_stop="326475" i_length="1993"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="326476" e_stop="326541" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="324022" stop="324482"/>
              <exon start="326476" stop="326541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="324023" stop="324482"/>
              <exon start="326476" stop="326516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="40" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA : GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAA</gDNA_template>
            <first_frame> W  *  D  Q  V  Q  R  N  R  R  A  M  L  K  P  S  L  S  I  L  R  R  M  C  Q  I  *  T  S  Q  A  V  Q  W  R  R  V  H  I  W  N  L  F  M  M  P  V  L  L  Q  L  R  K  I  L  L  P  P  Q  L  L  Q  I  C  F  *  N  L  K  P  G  M  P  L  R  G  N  L  W  Q  I  I  E  T  L  R  S  P  F  R  R  R  N  K  Y  F  H  Q  Q  I  P  K  N  C  G  *  G  R  Q  *  L  T  N  M  S  L  M  L  Q  S  W  R  Y  Q  T  T  M  K  S  L  A  V  Q  V  L  F  R  C  L  *  Q  I  V  R  H  L  L  I  R  S  L  P  Q  K :   R  H  L  F  Q  R  R  K  Q  G  P  Q  K  A  *  M  C  Q  K  F  K   </first_frame>
            <second_frame>  G  E  I  K  F  R  G  I  D  V  P  C  *  N  H  L  *  A  S  F  A  E  C  V  R  S  E  H  H  K  Q  F  S  G  G  E  F  T  F  G  T  Y  L  *  C  Q  S  S  F  N  *  E  K  Y  F  F  L  L  N  C  F  R  S  A  S  R  I  *  N  R  A  C  L  *  E  G  T  C  G  K  *  S  R  H  *  E  V  H  S  D  E  G  T  N  I  F  I  S  R  F  Q  R  I  A  A  E  G  G  N  N  *  Q  T  *  A  *  C  C  K  V  G  D  I  K  Q  R  *  S  L  W  Q  C  K  C  S  S  G  A  C  S  R  *  S  D  I  Y  *  F  E  V  F  H  K   : R  G  T  C  F  N  G  E  S  K  D  H  R  K  L  E  C  V  K  S  S  R  </second_frame>
            <third_frame>   V  R  S  S  S  E  E  S  T  C  H  V  E  T  I  S  E  H  P  S  P  N  V  S  D  L  N  I  T  S  S  S  V  E  E  S  S  H  L  E  P  I  Y  D  A  S  P  P  S  I  K  K  N  T  S  S  S  S  I  A  S  D  L  L  L  E  S  E  T  G  H  A  S  E  R  E  P  V  A  N  N  R  D  I  E  K  S  I  P  T  K  E  Q  I  F  S  S  A  D  S  K  E  L  R  L  R  E  A  I  T  D  K  H  E  L  D  V  A  K  L  E  I  S  N  N  D  E  V  F  G  S  A  S  A  L  P  V  P  V  A  D  S  Q  T  S  I  D  S  K  S  S  T  K  :  E  A  P  V  S  T  E  K  A  R  T  T  E  S  L  N  V  S  K  V  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="40" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="324024" stop="324482"/>
                    <exon start="326476" stop="326541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSSSEESTCHVETISEHPSPNVSDLNITSSSVEESSHLEPIYDASPPSIKKNTSSSSIASDLLLESETGHASEREPVANNRDIEKSIPTKEQIFSSADSKELRLREAITDKHELDVAKLEISNNDEVFGSASALPVPVADSQTSIDSKSSTKEAPVSTEKARTTESLNVSKVQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="41" PGL_strand="+" PGL_start="326718" PGL_stop="327192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="326718" e_stop="327192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="326718" e_stop="327192" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="326718" stop="327192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="41" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAAAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAG</gDNA_template>
            <first_frame> F  D  *  *  A  D  P  *  R  E  C  *  Q  T  R  P  S  *  F  D  *  *  C  A  C  *  R  I  Q  R  K  R  S  F  S  T  F  T  G  C  G  G  R  L  S  C  E  T  S  H  E  K  *  Y  R  *  T  K  H  E  P  S  T  S  I  K  N  *  I  T  *  S  *  L  I  *  E  L  R  I  K  S  Q  E  N  C  C  I  W  K  K  *  S  *  C  R  Q  N  R  S  G  S  C  K  T  R  R  *  G  N  Y  H  R  K  A  K  S  C  R  *  V  A  S  R  D  R  C  S  Y  R  *  C  Y  S  Q  E  R  K  P  H  K  S  G  S  S  S  S  S  S  D  F  K  R  K  C  G  *  L  </first_frame>
            <second_frame>  L  I  N  K  Q  T  L  E  E  N  A  D  R  R  V  L  H  D  S  I  D  D  V  H  V  R  E  S  K  G  K  G  V  S  L  H  S  Q  D  V  G  A  D  L  A  V  K  Q  V  M  K  N  D  I  D  K  P  N  T  S  L  Q  Q  A  L  K  T  E  S  R  E  A  S  S  S  K  N  S  E  S  S  L  K  K  I  V  V  S  G  R  S  E  A  D  A  G  K  I  D  Q  E  V  V  K  Q  E  D  K  V  T  T  T  E  K  P  N  L  A  V  E  L  P  Q  E  T  G  V  V  T  G  D  V  I  V  K  K  E  N  H  T  S  Q  A  Q  V  Q  V  P  V  T  S  K  E  N  V  D  S  * </second_frame>
            <third_frame>   *  L  I  S  R  P  L  K  R  M  L  T  D  A  S  F  M  I  R  L  M  M  C  M  L  E  N  P  K  E  K  E  F  L  Y  I  H  R  M  W  G  Q  T  *  L  *  N  K  S  *  K  M  I  *  I  N  Q  T  R  A  F  N  K  H  *  K  L  N  H  V  K  L  A  H  L  R  T  P  N  Q  V  S  R  K  L  L  Y  L  E  E  V  K  L  M  Q  A  K  *  I  R  K  L  *  N  K  K  I  R  *  L  P  P  K  S  Q  I  L  P  L  S  C  L  K  R  Q  V  *  L  P  V  M  L  *  S  R  K  K  T  T  Q  V  R  L  K  F  K  F  Q  *  L  Q  K  K  M  W  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0201C12.2" strand="+"/>
                <serials PGL_serial="41" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="326719" stop="327192"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINKQTLEENADRRVLHDSIDDVHVRESKGKGVSLHSQDVGADLAVKQVMKNDIDKPNTSLQQALKTESREASSSKNSESSLKKIVVSGRSEADAGKIDQEVVKQEDKVTTTEKPNLAVELPQETGVVTGDVIVKKENHTSQAQVQVPVTSKENVDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 554 chains have been computed
$ 
$ memory statistics:
$ 2931936 bytes spliced alignments in total
$ 216 spliced alignments have been stored
$ 13573 bytes was the average size of a spliced alignment
$ 66344 bytes predicted gene locations in total
$ 41 predicted gene locations have been stored
$ 1618 bytes was the average size of a predicted gene location
$ 6 megabytes was the average size of the backtrace matrix
$ 701 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 22:10:27
-->
