<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:21:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g57290" ref_strand="+" ref_description="C2_At3g57290">
      <seq>attatttattccttacaggaaaaacgaaaccctaaaaatctttcttctaccgatctgcttctcctcttttcagtttatctggttctgcaaggcggcgagttttctggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtttcgtataactatttctttgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29081" stop="33680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29381" g_stop="29729" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="500" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="728" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="850" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="1070" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1071" r_stop="1213" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1214" r_stop="1351" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1352" r_stop="1590" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="C2_At3g57290" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1593</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g57290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29381" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>ATTATTTATTCCTTACAG--GAAAA-ACGAAACCCTAAAAATCTTTCTTCTACCGATCTGCTTCTCCTCTTTTCAGTTTATCTGGTTCTGCAAGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g57270" ref_strand="+" ref_description="C2_At3g57270">
      <seq>cttttctttgccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgctgtttacatcccctggagttgttgtaaatgataatggaagagaataccggaacttatttgatgcactcttagatgctacatactcagcccttgaaaaagccggtggctcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacgtccattgacaacgcaaggacttacaacaacaacttgattagacatgtgaaaggagggagtccgaaaagaccatcaaaaccaattgaagcttacatttttgcgctgttgaatgaagatctgaagagccctgaaattgagaaacattttggactgtttacaccaagcaggcagccaaaatacgcgatcagtttcaactagctagactatgctagataattaacggaataagagttgttgatcttctctctttataatatgtagttgaataatcgaatcgttgctcaacttgaacagagagcaacccttcgcgtgataactgatgtgtactcatcctacatgcttatataaagcaattatctatatctgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50597" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50888" g_stop="50983" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="52169" g_length="1063"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="1165" r_length="1071" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1229"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="C2_At3g57270" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>1159</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g57270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50888" e_stop="50983"/>
          <exon e_start="51107" e_stop="52169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGC--------T-ACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATAT</genome_strand>
        <mrna_strand>CTTT-TC-TTTGCCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCTGTTTACATCCCCTGGAGTTGTTGTAAATGATAATGGAAGAGAATACCGGAACTTATTTGATGCACTCTTAGATGCTACATACTCAGCCCTTGAAAAAGCCGGTGGCTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACGTCCATTGACAACGCAAGGACTTACAACAACAACTTGATTAGACATGTGAAAGGAGGGAGTCCGAAAAGACCATCAAAACCAATTGAAGCTTACATTTTTGCGCTGTTGAATGAAGATCTGAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAGCAGGCAGCCAAAATACGCGATCAGTTTCAACTAGCTAGACTATGCTAGATAATTAACGGAATAAGAGTT-GTTGATCTTCTCTCTTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT42-F" ref_strand="+" ref_description="CT42-F">
      <seq>cgtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaacgctctgagttaaggtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69425" stop="68583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69126" g_stop="68887" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="244" polyA_stop="253"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="CT42-F" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="CT42-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69126" e_stop="68887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</genome_strand>
        <mrna_strand>CGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLET-3-K21" ref_strand="+" ref_description="cLET-3-K21">
      <seq>aaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="363" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69115" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="549" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="cLET-3-K21" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="cLET-3-K21" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAG</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29381" PGL_stop="33378"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29381" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31588"/>
            <exon e_start="32047" e_stop="32266"/>
            <exon e_start="32585" e_stop="32727"/>
            <exon e_start="32910" e_stop="33047"/>
            <exon e_start="33141" e_stop="33378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.940"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="0.982"/>
          <exon-intron don_prob="0.991" acc_prob="0.819" e_score="0.992"/>
          <exon-intron don_prob="0.976" acc_prob="0.819" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.986"/>
          <exon-intron don_prob="0.963" acc_prob="0.888" e_score="0.978"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="29381" e_stop="29729" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="31467" e_stop="31588" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.819">
            <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="0.977">
            <gDNA_exon_boundary e_start="32047" e_stop="32266" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.819">
            <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="32585" e_stop="32727" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="7" e_score="0.978">
            <gDNA_exon_boundary e_start="32910" e_stop="33047" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.963" acc_prob="0.888">
            <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="0.950">
            <gDNA_exon_boundary e_start="33141" e_stop="33378" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g57290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA : ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG : CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT : GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</gDNA_template>
            <first_frame> I  I  Y  S  L  Q  Q  K  R  R  N  P  R  N  L  S  S  T  D  P  L  L  I  F  S  V  S  L  V  L  H  G  G  E  F  C  G  C  Y  L  L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M  H  W  S  L  F  I  F  F  N  H  D  N  G  R  T  L  I  I  D  L  F  N  Q  D  K :   Y  L  N  A  I  Q  T  S  A  P  H  L  L  R  Y  L  A  I  A  F  I  V  N  K  R  R  R  P  Q  F  K  D  F  I  K  V  I  Q  Q  E  Q  H  S  C  K  D  P  I  T  E  F  L  A  C  I  Y  V  D  Y  D  F  D  G  A  Q  E  K  M  K  E  C  E  E  :  L  I  L  N  D  P  F  L  G  K  R  A  E  E  G  S  F  S  S  V  P  L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  L  D  A  K  I  D  T  E  T  G  T  V  T  M  E  P  N  Q  P  N  V :   Y  E  Q  L  I  D  H  T  K  P  L  S  G  R  T  Y  K  L  V  S  Q  L  L  E  H  A  Q  T  Q  L  A  R  *  F  G  *  G  H  *  A  R  A  N  F  A  L  L  P  Y  L  I  N  T  F  I  F  K  N  V  A  Y  V  N  S  W  I  S  L  G  G  N  F  E  I  H  D  E  L  Y </first_frame>
            <second_frame>  L  F  I  P  Y  S  K  K  D  E  T  L  E  I  F  L  L  P  I  H  F  S  S  F  Q  F  L  W  F  C  T  A  A  S  F  V  V  A  I  S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  I  G  V  Y  S  S  S  S  T  M  T  M  A  G  H  *  S  L  T  C  L  T  R  T   : N  T  *  M  P  F  K  Q  V  L  P  T  C  C  G  T  W  L  L  H  L  L  S  T  K  E  E  D  L  N  L  R  T  L  *  R  L  F  S  R  S  N  T  L  V  K  I  P  S  Q  S  F  W  H  V  F  T  S  T  M  I  L  M  G  H  R  R  R  *  R  S  A  K  S :   *  Y  *  M  T  H  S  L  E  K  E  L  K  R  A  V  S  P  L  C  H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S  L  M  P  R  *  T  L  K  P  G  Q  L  Q  W  N  Q  I  S  L  M   : C  T  S  S  S  S  I  T  P  S  P  F  L  D  A  R  T  N  *  S  V  S  F  L  N  M  H  K  H  N  L  L  D  S  L  V  E  D  I  K  L  V  P  I  L  H  C  S  R  T  *  L  T  P  L  Y  S  R  M  L  L  M  L  I  P  G  F  P  L  E  E  I  L  R  Y  M  M  N  Y   </second_frame>
            <third_frame>   Y  L  F  L  T  A  K  K  T  K  P  *  K  S  F  F  Y  R  S  T  S  H  L  F  S  F  S  G  S  A  R  R  R  V  L  W  L  L  S  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A  L  E  S  I  H  L  L  Q  P  *  Q  W  Q  D  T  D  H  *  P  V  *  P  G  Q  :  I  L  E  C  H  S  N  K  C  S  P  L  A  A  V  L  G  Y  C  I  Y  C  Q  Q  K  K  K  T  S  I  *  G  L  Y  K  G  Y  S  A  G  A  T  L  L  *  R  S  H  H  R  V  F  G  M  Y  L  R  R  L  *  F  *  W  G  T  G  E  D  E  G  V  R  R   : A  N  I  E  *  P  I  P  W  K  K  S  *  R  G  Q  F  L  L  C  A  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K  A  *  C  Q  D  R  H  *  N  R  D  S  Y  N  G  T  K  S  A  *  C  :  V  R  A  A  H  R  S  H  Q  A  P  F  W  T  H  V  Q  I  S  Q  S  A  S  *  T  C  T  N  T  T  C  *  I  V  W  L  R  T  L  S  S  C  Q  F  C  I  A  P  V  P  D  *  H  L  Y  I  Q  E  C  C  L  C  *  F  L  D  F  P  W  R  K  F  *  D  T  *  *  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29381" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31588"/>
                    <exon start="32047" stop="32266"/>
                    <exon start="32585" stop="32727"/>
                    <exon start="32910" stop="33047"/>
                    <exon start="33141" stop="33240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSLQQKRRNPRNLSSTDPLLIFSVSLVLHGGEFCGCYLLPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLAIAFIVNKRRRPQFKDFIKVIQQEQHSCKDPITEFLACIYVDYDFDGAQEKMKECEELILNDPFLGKRAEEGSFSSVPLRDEFLENARLFISETYCRIHQRIDMGVLAEKLNLNLEEAERWMVNLIRTSKLDAKIDTETGTVTMEPNQPNVYEQLIDHTKPLSGRTYKLVSQLLEHAQTQLAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="50888" PGL_stop="52169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50888" e_stop="50983"/>
            <exon e_start="51107" e_stop="52169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.876" e_score="0.948"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="50888" e_stop="50983" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.876">
            <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="51107" e_stop="52169" e_length="1063"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50888" stop="50983"/>
              <exon start="51107" stop="52169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g57270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG : GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATAT</gDNA_template>
            <first_frame> L  C  Q  L  P  W  L  V  P  N  Y  I  F  Q  L  P  R  R  L  C  W  *  Y  L  Y  W  L  P  *  I  S  Q  :  V  H  K  Q  E  F  V  M  E  E  M  G  M  D  Y  H  L  Q  Q  M  L  W  L  Y  V  I  E  T  I  Y  E  E  *  E  S  M  I  L  I  N  Q  L  S  K  P  S  E  A  R  I  L  N  S  Y  *  A  C  Q  I  L  T  F  R  I  S  R  L  A  K  L  T  R  M  L  G  S  K  T  M  L  G  T  M  V  M  L  S  S  G  I  *  L  L  E  M  K  L  V  H  *  M  A  T  R  S  M  C  L  S  *  S  M  Q  *  E  T  F  R  T  R  F  L  A  L  V  *  E  T  R  S  K  F  L  L  L  L  K  P  N  L  L  Q  I  L  T  L  H  Q  E  A  S  L  K  T  T  S  E  G  M  L  I  P  S  L  D  S  *  *  L  T  A  H  L  Y  L  S  T  Y  I  H  T  L  Q  *  Q  T  I  K  L  L  S  L  T  T  R  C  L  H  P  L  E  L  L  *  M  I  M  E  E  N  T  A  T  Y  L  M  H  S  *  M  L  H  T  R  P  L  K  K  P  V  V  H  L  W  I  S  L  Y  Q  R  A  V  G  L  Q  L  E  Q  G  N  *  P  L  L  T  T  R  G  L  T  T  T  T  *  L  D  M  *  K  E  G  V  R  K  D  H  Q  S  L  L  R  L  T  F  S  P  C  L  M  K  I  S  R  A  L  K  L  R  N  I  L  D  C  L  H  Q  T  G  S  Q  N  T  Q  S  V  S  T  S  *  T  M  L  R  N  K  S  *  S  I  F  S  S  Y  N  M  *  L  N  N  R  I  V  A  Q  L  E  N  R  A  T  L  R  M  I  </first_frame>
            <second_frame>  F  A  N  Y  H  G  L  Y  Q  T  T  F  S  N  Y  R  D  D  S  A  G  D  T  Y  I  G  Y  L  R  F  H  R :   C  T  N  R  S  L  L  W  K  K  W  E  W  I  T  I  S  S  R  C  C  G  S  M  *  S  K  Q  Y  T  K  N  E  N  L  *  S  S  S  T  N  S  P  S  P  Q  R  L  E  Y  *  T  H  T  R  R  A  K  S  *  P  S  E  Y  R  V  *  P  S  *  R  E  C  L  G  P  K  Q  C  *  E  L  W  *  C  *  V  Q  V  Y  S  C  W  K  *  S  *  S  I  K  W  Q  R  A  V  C  A  F  R  D  Q  C  N  E  K  H  S  E  R  D  F  W  R  W  S  R  K  P  D  Q  S  F  Y  C  Y  *  N  R  T  Y  Y  R  Y  L  P  S  I  K  R  Q  V  *  R  Q  R  P  R  V  C  *  S  H  H  *  I  L  S  S  *  P  L  T  F  T  C  Q  H  I  S  I  L  C  N  S  K  Q  S  S  Y  *  A  *  L  R  V  V  Y  I  P  W  S  C  C  E  *  *  W  K  R  I  P  Q  L  I  *  C  T  L  R  C  Y  I  L  G  P  *  K  S  R  W  F  I  F  G  Y  R  C  I  R  E  R  L  A  F  S  W  S  R  A  I  D  L  Y  *  Q  R  E  D  L  Q  Q  Q  L  D  *  T  C  E  K  R  E  S  E  K  T  I  K  A  Y  *  G  L  H  F  R  L  V  *  *  K  S  Q  E  P  *  N  *  E  T  F  W  T  V  Y  T  K  Q  A  A  K  I  P  N  Q  F  Q  L  A  R  L  C  Y  G  I  R  V  S  R  S  F  L  L  I  I  C  S  *  I  I  E  S  L  L  N  L  K  T  E  Q  P  F  A  *  Y </second_frame>
            <third_frame>   L  P  I  T  M  A  C  T  K  L  H  F  P  I  T  A  T  T  L  L  V  I  L  I  L  A  T  L  D  F  T   : G  A  Q  T  G  V  C  Y  G  R  N  G  N  G  L  P  S  P  A  D  V  V  A  L  C  N  R  N  N  I  R  R  M  R  I  Y  D  P  H  Q  P  T  L  Q  A  L  R  G  S  N  I  E  L  I  L  G  V  P  N  P  D  L  Q  N  I  A  S  S  Q  A  N  A  N  A  W  V  Q  N  N  V  R  N  Y  G  N  V  K  F  R  Y  I  A  V  G  N  E  V  S  P  L  N  G  N  A  Q  Y  V  P  F  V  I  N  A  M  R  N  I  Q  N  A  I  S  G  A  G  L  G  N  Q  I  K  V  S  T  A  I  E  T  E  L  T  T  D  T  Y  P  P  S  R  G  K  F  K  D  N  V  R  G  Y  V  D  P  I  I  R  F  L  V  A  N  R  S  P  L  L  V  N  I  Y  P  Y  F  A  I  A  N  N  Q  A  I  K  L  D  Y  A  L  F  T  S  P  G  V  V  V  N  D  N  G  R  E  Y  R  N  L  F  D  A  L  L  D  A  T  Y  S  A  L  E  K  A  G  G  S  S  L  D  I  V  V  S  E  S  G  W  P  S  A  G  A  G  Q  L  T  S  I  D  N  A  R  T  Y  N  N  N  L  I  R  H  V  K  R  G  S  P  K  R  P  S  K  P  I  E  A  Y  I  F  A  L  F  N  E  N  L  K  S  P  E  I  E  K  H  F  G  L  F  T  P  N  R  Q  P  K  Y  P  I  S  F  N  *  L  D  Y  A  T  E  *  E  L  V  D  L  F  F  L  *  Y  V  V  E  *  S  N  R  C  S  T  *  K  Q  S  N  P  S  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50890" stop="50983"/>
                    <exon start="51107" stop="52059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPITMACTKLHFPITATTLLVILILATLDFTGAQTGVCYGRNGNGLPSPADVVALCNRNNIRRMRIYDPHQPTLQALRGSNIELILGVPNPDLQNIASSQANANAWVQNNVRNYGNVKFRYIAVGNEVSPLNGNAQYVPFVINAMRNIQNAISGAGLGNQIKVSTAIETELTTDTYPPSRGKFKDNVRGYVDPIIRFLVANRSPLLVNIYPYFAIANNQAIKLDYALFTSPGVVVNDNGREYRNLFDALLDATYSALEKAGGSSLDIVVSESGWPSAGAGQLTSIDNARTYNNNLIRHVKRGSPKRPSKPIEAYIFALFNENLKSPEIEKHFGLFTPNRQPKYPISFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="69970" PGL_stop="68887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69970" e_stop="69612"/>
            <exon e_start="69300" e_stop="68887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69970" e_stop="69612" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="69300" e_stop="68887" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLET-3-K21" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69126" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT42-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</gDNA_template>
            <first_frame> V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L   </first_frame>
            <second_frame>  Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  </second_frame>
            <third_frame>   I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 114 chains have been computed
$ 
$ memory statistics:
$ 7344 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1836 bytes was the average size of a spliced alignment
$ 8168 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2722 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 120 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:22:05
-->
