<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:34:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589255" ref_strand="+" ref_description="SGN-U589255 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="+" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="22463" stop="32390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22763" g_stop="23248" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="+" ref_id="SGN-U589255" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22763" e_stop="23248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGTTTTCACTAATCTTCACAAGCAAAAGCAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAAACTTCTAACACAACACACCAATTCCTTTATAGAGTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGATAAGCTCCAGATGTTGCTGTTGTTCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCTTTTACAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAGTCACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</genome_strand>
        <mrna_strand>CAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTAGAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGA-AGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CAC-TTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582761" ref_strand="+" ref_description="SGN-U582761 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|171854669|dbj|BAG16524.1| (e_value=9e-63) C2; (*ATH) AT4G34150.1 (e_value=4e-49) | Symbol: None | C2 domain-containing protein, similar to calcium-dependent protein kinase (Dunaliella tertiolecta) GI:6644464; contains Pfam profile PF00168: C2 domain | chr4:16354978-16357297 FORWARD | Aliases: F28A23.90, F28A23_90; ">
      <seq>ggtcatcgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaggccctccatttgttacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccagcaccatctccttattccacagcctcgcctccttcagcattttatccagcttctccttattccacagtcccaccacctccagcagcatatcattcaacatctctttatccccctcaatcggctgcttatccttcaccttactcatcatctgcgtatctgcctcagccttatccaccacagggttactcttatcccccaggtcaataccctggagtctatcctccacgatcgtattgatgctatgttcttaaatgcctggacaaggattgtgcacaaacaaatactggctgagttttcatttattagtgtggtatcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71092" stop="68372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70793" g_stop="70714" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="185" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="312" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="430" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69192" g_stop="68874" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="749" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68873" i_stop="68792" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68791" g_stop="68672" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="869" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U582761" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70793" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68874"/>
          <exon e_start="68791" e_stop="68672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAGGTAAATCTTGTAAGATGTGAATTTCTTACTCTCCCCTGGTATGTCAATTACGGTTAACTATTTATTTTTGTTGTCTTGCCAGGTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGTGCACAAACAAGTACTTGCTGAGTTTTCATTTATTAGTGTGGTATCATGT</genome_strand>
        <mrna_strand>GGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAG..................................................................................GTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGTGCACAAACAAATACTGGCTGAGTTTTCATTTATTAGTGTGGTATCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582760" ref_strand="+" ref_description="SGN-U582760 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341044|emb|CAO47849.1| (e_value=2e-48) unnamed; (*ATH) AT4G34150.1 (e_value=4e-35) | Symbol: None | C2 domain-containing protein, similar to calcium-dependent protein kinase (Dunaliella tertiolecta) GI:6644464; contains Pfam profile PF00168: C2 domain | chr4:16354978-16357297 FORWARD | Aliases: F28A23.90, F28A23_90; ">
      <seq>cctcattttttttccttagctaattttaaacccaaattcctcgtcatcgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactggtacgaacttcattcaactacagctaaaatactgagattttatgaattacttttcattatttactttgaattttcgtttttgtagttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacaggtacaaattgaatggatttatatctgttaactatcatttttggtgaattttgatgagattcatgcttttgtttgtatgtagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcagganaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcnnnccctccatttgttacaccaactccngnnncatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccng</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71134" stop="68772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70834" g_stop="70316" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="591" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="637" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69192" g_stop="69072" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="758" r_length="121" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U582760" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70834" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="69072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCATTTTTTTTCCTTAGCTAATTTTAAACCCAAATTCCTCGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAG</genome_strand>
        <mrna_strand>CCTCATTTTTTTTCCTTAGCTAATTTTAAACCCAAATTCCTCGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGANAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCNNNCCCTCCATTTGTTACACCAACTCCNGNNNCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCNG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589719" ref_strand="+" ref_description="SGN-U589719 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157341044|emb|CAO47849.1| (e_value=2e-41) unnamed; (*ATH) AT4G34150.1 (e_value=9e-33) | Symbol: None | C2 domain-containing protein, similar to calcium-dependent protein kinase (Dunaliella tertiolecta) GI:6644464; contains Pfam profile PF00168: C2 domain | chr4:16354978-16357297 FORWARD | Aliases: F28A23.90, F28A23_90; ">
      <seq>cgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggtatattgataaaaacaactgctatttcttgatgaattttgctatggtctttcttttacggcgagaattgtgtttatagtccttctaagtttgaatttgtatctttttttgtttgttttctttgacaaaatgttctacattgtgattccactctttcatgtgacattaatatgacaatttgcgacaccaaggtctgggatgtatggatatgatgtgantcttttcattcatcactgaagttcttcatttcatcattattgattaacatagacctgtctataactagccatcaacttacttccgganagtgatgcnnnggaacttaanctttcataagctatttnnattcngnaaagtgttganttttttttgnncanctttctnc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71087" stop="69443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70787" g_stop="70714" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70542" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="161" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70541" i_stop="70443" i_length="99">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="288" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="69741" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="745" r_length="457" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U589719" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70787" e_stop="70714"/>
          <exon e_start="70628" e_stop="70542"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="69741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCC</genome_strand>
        <mrna_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCC...................................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGANTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGANAGTGATGC-NNNGGAACTTAANCTTTCATAAGCTATTTNNATTCNG-NAAAGTGTTG-ANTTTTTTTTGNNCANCTTTCTNC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582762" ref_strand="+" ref_description="SGN-U582762 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157341044|emb|CAO47849.1| (e_value=5e-48) unnamed; (*ATH) AT4G34150.1 (e_value=2e-39) | Symbol: None | C2 domain-containing protein, similar to calcium-dependent protein kinase (Dunaliella tertiolecta) GI:6644464; contains Pfam profile PF00168: C2 domain | chr4:16354978-16357297 FORWARD | Aliases: F28A23.90, F28A23_90; ">
      <seq>cgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggtatattgataaaaacaactgctatttcttgatgaattttgctatggtctttcttttacggcgagaattgtgtttatagtccttctaagtttgaatttgtatctttttttgtttgttttctttgacaaaatgttctacattgtgattccactctttcatgtgacattaatatgacaatttgcgacaccaaggtctgggatgtatggatatgatgtgattcttttcattcatcactgaagttcttcatttcatcattattgattaacatagacctgtctataactagccatcaacttacttccggacagtgatgcaggtggaacttaagctttcataagctatttgtattctgtaaaagtgttgaatttttttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71087" stop="69453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70787" g_stop="70714" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="179" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="306" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="69753" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="754" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U582762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70787" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="69753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGT</genome_strand>
        <mrna_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589718" ref_strand="+" ref_description="SGN-U589718 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|171854669|dbj|BAG16524.1| (e_value=6e-43) C2; (*ATH) AT4G34150.1 (e_value=7e-36) | Symbol: None | C2 domain-containing protein, similar to calcium-dependent protein kinase (Dunaliella tertiolecta) GI:6644464; contains Pfam profile PF00168: C2 domain | chr4:16354978-16357297 FORWARD | Aliases: F28A23.90, F28A23_90; ">
      <seq>cgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaagtaagtctcaatttgttttctcttgactgatttggatttgttgttgagttgattgaatgatctatttagtttgttagttgagtgttaatgattaaattatttaatttaattctagggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggtatattgataaaaacaactgctatttcttgatgaattttgctatggtctttcttttacggcgagaattgtgtttatagtccttctaagtttgaatttgtatctttttttgtttgttttctttgacaaaatgttctacattgtgattccactctttcatgtgacattaatatgacaatttgcgacaccnaggtctgggangnanggatatgangtgantcttttcattcatcactgaagttcntcatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71087" stop="69577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70787" g_stop="70714" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="179" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="69877" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="745" r_length="566" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U589718" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70787" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="69877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCAT</genome_strand>
        <mrna_strand>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCNAGGTCTGGGANGNANGGATATGANGTGANTCTTTTCATTCATCACTGAAGTTCNTCATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599888" ref_strand="+" ref_description="SGN-U599888 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaaaagcctggtcatattccagaatgtcaatttagagagctcctcaaatattggaattctgaaaaattcaagaaaatgtctgaaacaaatgcaaagaatcgaaagaaaatgatgaatccacaaactactggcaaaaagagtttcgctttagttcgtaataagctggagaaagataaggagacagtatcatctaaggatctctttgtggttacaagaacaagaaaacctggtcgtttgtacaaggcctcaaatgaagatactactataggctgaaatggaggaaattgaaaaacaaataagcataaatggtgagtatgttgatgcattttcaagcgtcatgggtcctgaacatccgggacgtctaagactatatggcgcaggagttacaaagactactttgaaaaaaaaagttggcaattcggaatcaactttaagtgcaacaactgatggaatgcagcaaatgcaagagaggatgcagaaaatggagaaacagatggaggaacaaaagaaaattgtgcgacaagaagttattgcagatgttattgcacaacttaagcatgcaggattaattgatcctaatatattggcaacattgtcgactccttcaccaagagaatctacttttgtttaaggggctaaacaaggtgatgaaatcgaagaaagggatgaaagcagtagtgaagacttgacataggagctgaagtatatattgatgtaaactttattgatgttctagaaatcatatatttttgaagattgaaaattctatggcatggtgttcaccttttttggattctataaaaagatttgtatattttggatcttgaattctaattaaggtaatgaacatttattctcgttaacgaaaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="96608" stop="93416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96309" g_stop="96237" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96236" i_stop="95645" i_length="592">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95644" g_stop="95552" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="166" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95551" i_stop="95457" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95456" g_stop="95359" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="266" r_length="100" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95358" i_stop="95277" i_length="82">
            <donor d_prob="0.680" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95276" g_stop="94898" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="645" r_length="379" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94897" i_stop="93961" i_length="937">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93960" g_stop="93787" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="819" r_length="174" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-U599888" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96309" e_stop="96237"/>
          <exon e_start="95644" e_stop="95552"/>
          <exon e_start="95456" e_stop="95359"/>
          <exon e_start="95276" e_stop="94898"/>
          <exon e_start="93960" e_stop="93787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAGGTAAAATTGTAGTTCAGAATCTCAATTTTTTGAATAAGTAGCATTTATATTATAGCTCCTGATTTTTGCTCCCTTCCCAGCTTCTTCCCACCTAGTAACCCCCAACACTTCAAAGCTGTTAGAAAAAATAGTACCAGCCTGCATAACCTTCTCTTTGACTGCTACAGAAGTAAATCAAAACATATAGTAACCATCTGAATAGTATAGGTAGTAAAGCATCTGGATAAAGTGCCAACACTGTCTGCTATGACATAATTGTCCATAGTGTGATATCGGTGTTGCTGACATATTACCTGAGGCTTGGTTGGTACTTTAGTGTCTAAAGTAGTGTGATAATAGTATATATTCTGCTTTATTTTTTCTTCTACTCTCTTCTCTATTGTAATATTTTGCAGCTTCTTTCTTTATTTATTGTGATAGTCACATGAATTTTACCAGACACCTTAACACTATATAATGACTAATATTGACAGATTGTTATAAAGGAAAAATAGACTGTTATAAAGGAAAGACAGACTAATATTGACCTCGTCTAGTACACTATATAAACTAATATACCTTTGATTAACATTACTGATTCATTTCTTTGCAGAAAATGTCTGAAACAAATGCAATGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTGGTGAGTTCTCTTATATATTATTTTTTAATGAAATTTTCTTTTGGATCTCTTCCAGTGTGAGTTTATTTTATATATATATATTTCAATTTGACTAGGAGAAAGATAATGAGATAGTATAATCTAAGGA--TCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAACGCCTCAAATGAAGATACTATTAGTAAATTGTATGTGCCTGTCTATTTTTTTTATTGAGATCAATTGTTTATTTCATAAGATTGTGTTTGTTGGATATGCTTTGGTAGCCTGAAATGGAGGAAATTCAAAAACAAATAAGCATAAATGATGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCATGAACATCCAGGACGTCTAACACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGAAATTTGGAATCAATTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAAGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGTAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTTATCCTAACATATTGGAAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTCAAGGGGCTAAACAAGGTTAGTGTCGCTAATTCTATGTTTTGATTGGTATTTGTTGTTGCTACTTGCTATAGGATTAGAATGGAATAGTATGCTATTGATCTAAGGAAGTTGGGGAAAAGTTAGGCAAAGGATCATTATATGCCTGATTCTTGATTTTAATTTCTGAGTTGCTGCTTGTTCTCTGATAGTTTAATGTCTGAGTTGCTTCTTGTAGTCTGGTTCATGAGTTTTCTGGTGCTGCTTGTAGCCTAGTAAAGGACCAGTTGTTAGATTCATGATTTTTTTTTGATACTTGCTGCTTGTAGTTTGGTTTCTTGTGGTTTCTTCTTTATGTTAATTAAACATGTCTCTTGTAGCATGATAGTGTTGTTTCTACTGCTTATAGTTTGGACTCTTGTTTTTGCTGCTGGTCTCTTGTTTCTGGTGCTGGTTTCTTGTAGCATTATAGTGTTGAATCCTAGCTTCACAATTATGTTTAGTCGAGCCAACATAGTAGCTAATAACTTCATGTATAGTCTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGTATAGTAGTCTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGAAGCTGAATGTTATTGGCATGTATAGTAGTCTAGTCTCTTGTTTCTGCTGCTACTTGTAGAAGTTTGAATGCAGCTAGCATTTGAATGTTATTGGCATGTATAGCGTAGTCTGGTCTCTTGTTTTTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGTACTTGGTTTCCATGTTTTAGGGTTGAACAATTCTAAAAGCTAATGCATGGTTGTAACTACATGTATACTTGTTAATTTCCAAGATTTGAGGTTTGCTAAATTATTTATATTTTTTTCTGATTATATGTAGGTGATGAAATCGAAGAAGGCGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTTAATGCTATAAAAAGATTTGTATATTTT</genome_strand>
        <mrna_strand>GAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTCTGAAACAAATGCAAAGAATCGAAAGAAAATGATGAATCCACAAACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG...............................................................................................GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAAGGCCTCAAATGAAGATACTACTA..................................................................................TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTCGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTGATCCTAATATATTGGCAACATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTTAAGGGGCTAAACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGGTGTTCACCTTTTTTGGATTCTATAAAAAGATTTGTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="22763" PGL_stop="23248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22763" e_stop="23248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="22763" e_stop="23248" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22763" stop="23248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATCGTTTTCACTAATCTTCACAAGCAAAAGCAAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAGTCCTCTATTGCTCAACAAGCCTAAGTAGAAAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAAACTTCTAACACAACACACCAATTCCTTTATAGAGTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGATAAGCTCCAGATGTTGCTGTTGTTCTTGGAATAATTCTGCCTTTGCTTTGTGTAGCTTTTACAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTAAGTCACAAATGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGCTGGAAAGGTCACACTTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGTACCGTCTCCAGC</gDNA_template>
            <first_frame> Q  S  F  S  L  I  F  T  S  K  S  K  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  S  S  I  A  Q  Q  A  *  V  E  K  Q  S  T  H  *  A  I  P  P  G  Q  P  K  L  L  T  Q  H  T  N  S  F  I  E  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  D  K  L  Q  M  L  L  L  F  L  E  *  F  C  L  C  F  V  *  L  L  Q  E  F  L  K  S  F  Y  Q  V  A  K  T  K  S  Q  M  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  R  S  H  F  S  D  A  I  G  K  C  A  P  T  F  C  T  V  S  S </first_frame>
            <second_frame>  N  R  F  H  *  S  S  Q  A  K  A  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  S  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  N  F  *  H  N  T  P  I  P  L  *  S  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  I  S  S  R  C  C  C  C  S  W  N  N  S  A  F  A  L  C  S  F  Y  K  S  S  *  K  V  F  I  K  L  Q  K  L  S  H  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  L  T  P  S  G  S  V  H  L  L  S  V  P  S  P   </second_frame>
            <third_frame>   I  V  F  T  N  L  H  K  Q  K  Q  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  V  L  Y  C  S  T  S  L  S  R  K  T  I  Y  P  L  S  Y  P  T  W  T  T  *  T  S  N  T  T  H  Q  F  L  Y  R  V  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  *  A  P  D  V  A  V  V  L  G  I  I  L  P  L  L  C  V  A  F  T  R  V  L  E  K  F  L  S  S  C  K  N  *  V  T  N  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  A  G  K  V  T  L  F  *  R  H  R  E  V  C  T  Y  F  L  Y  R  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0306E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="70834" PGL_stop="68672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70834" e_stop="70316"/>
            <exon e_start="70200" e_stop="70129"/>
            <exon e_start="69332" e_stop="69287"/>
            <exon e_start="69192" e_stop="69072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.972" e_score="0.978"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70834" e_stop="70316" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.983">
            <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="70129" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="69332" e_stop="69287" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.934">
            <gDNA_exon_boundary e_start="69192" e_stop="69072" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70834" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="69072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582760" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCATTTTTTTTCCTTAGCTAATTTTAAACCCAAATTCCTCGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA : GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG : GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT : AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAG</gDNA_template>
            <first_frame> P  H  F  F  S  L  A  N  F  K  P  K  F  L  V  I  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T  G  T  N  F  I  Q  L  Q  L  K  Y  *  D  F  M  N  Y  F  S  L  F  T  L  N  F  R  F  C  S  C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P  Y  S  Y  M  Y  R  Y  K  L  N  G  F  I  S  V  N  Y  H  F  W  *  I  L  M  R  F  M  L  L  F  V  C  R  W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  :  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  :  A  C  R  R  S  S  T  N  N  A  L  C  K  Y  Q   : *  A  S  N  K  P  C  S  I  R  P  S  I  C  Y  T  N  S  W  I  I  S  I  F  S  S  S  T  T  C  S  F  S  P  N  T  F  W  L  S   </first_frame>
            <second_frame>  L  I  F  F  P  *  L  I  L  N  P  N  S  S  S  S  L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  V  R  T  S  F  N  Y  S  *  N  T  E  I  L  *  I  T  F  H  Y  L  L  *  I  F  V  F  V  V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F  R  T  R  T  C  T  G  T  N  *  M  D  L  Y  L  L  T  I  I  F  G  E  F  *  *  D  S  C  F  C  L  Y  V  D  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K :   V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R :   H  A  G  E  V  R  L  I  M  H  Y  A  N  T  N  :  K  P  A  T  S  H  A  Q  S  G  P  P  F  V  T  P  T  P  G  S  Y  P  Y  S  V  A  P  P  H  V  A  S  H  P  T  P  S  G  Y  P  </second_frame>
            <third_frame>   S  F  F  F  L  S  *  F  *  T  Q  I  P  R  H  R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  W  Y  E  L  H  S  T  T  A  K  I  L  R  F  Y  E  L  L  F  I  I  Y  F  E  F  S  F  L  *  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  V  L  V  H  V  Q  V  Q  I  E  W  I  Y  I  C  *  L  S  F  L  V  N  F  D  E  I  H  A  F  V  C  M  *  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E   : R  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A   : G  M  Q  E  K  F  D  *  *  C  T  M  Q  I  P  I :   S  Q  Q  Q  A  M  L  N  Q  A  L  H  L  L  H  Q  L  L  D  H  I  H  I  Q  *  L  H  H  M  *  L  L  T  Q  H  L  L  A  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70467" stop="70316"/>
                    <exon start="70200" stop="70129"/>
                    <exon start="69332" stop="69287"/>
                    <exon start="69192" stop="69073"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCFCLYVDGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGKVQLQKVLSQGFDDTAWPLQRKNGRHAGEVRLIMHYANTNKPATSHAQSGPPFVTPTPGSYPYSVAPPHVASHPTPSGYP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70787" e_stop="70714"/>
            <exon e_start="70628" e_stop="70524"/>
            <exon e_start="70442" e_stop="69877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70787" e_stop="70714" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70628" e_stop="70524" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="70442" e_stop="69877" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70787" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="69877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG : TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG : ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCAT</gDNA_template>
            <first_frame> R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  C :   C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P  Y  S  Y  M  Y  R :   W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  V  S  L  N  L  F  S  L  D  *  F  G  F  V  V  E  L  I  E  *  S  I  *  F  V  S  *  V  L  M  I  K  L  F  N  L  I  L  G  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A  G  I  L  I  K  T  T  A  I  S  *  *  I  L  L  W  S  F  F  Y  G  E  N  C  V  Y  S  P  S  K  F  E  F  V  S  F  F  V  C  F  L  *  Q  N  V  L  H  C  D  S  T  L  S  C  D  I  N  M  T  I  C  D  T  K  V  W  D  V  W  I  *  C  D  S  F  H  S  S  L  K  F  F  I  S  </first_frame>
            <second_frame>  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T   : V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F  R  T  R  T  C  T   : D  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K  *  V  S  I  C  F  L  L  T  D  L  D  L  L  L  S  *  L  N  D  L  F  S  L  L  V  E  C  *  *  L  N  Y  L  I  *  F  *  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  V  Y  *  *  K  Q  L  L  F  L  D  E  F  C  Y  G  L  S  F  T  A  R  I  V  F  I  V  L  L  S  L  N  L  Y  L  F  L  F  V  F  F  D  K  M  F  Y  I  V  I  P  L  F  H  V  T  L  I  *  Q  F  A  T  P  R  S  G  M  Y  G  Y  D  V  I  L  F  I  H  H  *  S  S  S  F  H </second_frame>
            <third_frame>   L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  :  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  V  L  V  H  V  Q  :  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E  S  K  S  Q  F  V  F  S  *  L  I  W  I  C  C  *  V  D  *  M  I  Y  L  V  C  *  L  S  V  N  D  *  I  I  *  F  N  S  R  V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R  Y  I  D  K  N  N  C  Y  F  L  M  N  F  A  M  V  F  L  L  R  R  E  L  C  L  *  S  F  *  V  *  I  C  I  F  F  C  L  F  S  L  T  K  C  S  T  L  *  F  H  S  F  M  *  H  *  Y  D  N  L  R  H  Q  G  L  G  C  M  D  M  M  *  F  F  S  F  I  T  E  V  L  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70786" stop="70714"/>
                    <exon start="70628" stop="70524"/>
                    <exon start="70442" stop="70312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFFLLLLSMSIAYGIQGQLLEVTVVACNKLKDTEWISRQDPYVCLEYGSSKFRTRTCTDGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="70787" e_stop="70714"/>
            <exon e_start="70628" e_stop="70524"/>
            <exon e_start="70442" e_stop="70316"/>
            <exon e_start="70200" e_stop="69753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70787" e_stop="70714" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70628" e_stop="70524" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70442" e_stop="70316" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.983">
            <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="69753" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70787" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="69753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG : TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG : ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA : GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGT</gDNA_template>
            <first_frame> R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  C :   C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P  Y  S  Y  M  Y  R :   W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  :  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  V  Y  *  *  K  Q  L  L  F  L  D  E  F  C  Y  G  L  S  F  T  A  R  I  V  F  I  V  L  L  S  L  N  L  Y  L  F  L  F  V  F  F  D  K  M  F  Y  I  V  I  P  L  F  H  V  T  L  I  *  Q  F  A  T  P  R  S  G  M  Y  G  Y  D  V  I  L  F  I  H  H  *  S  S  S  F  H  H  Y  *  L  T  *  T  C  L  *  L  A  I  N  L  L  P  D  S  D  A  G  G  T  *  A  F  I  S  Y  L  Y  S  V  K  V  L  N  F  F  L  </first_frame>
            <second_frame>  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T   : V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F  R  T  R  T  C  T   : D  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K :   V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R  Y  I  D  K  N  N  C  Y  F  L  M  N  F  A  M  V  F  L  L  R  R  E  L  C  L  *  S  F  *  V  *  I  C  I  F  F  C  L  F  S  L  T  K  C  S  T  L  *  F  H  S  F  M  *  H  *  Y  D  N  L  R  H  Q  G  L  G  C  M  D  M  M  *  F  F  S  F  I  T  E  V  L  H  F  I  I  I  D  *  H  R  P  V  Y  N  *  P  S  T  Y  F  R  T  V  M  Q  V  E  L  K  L  S  *  A  I  C  I  L  *  K  C  *  I  F  F  C </second_frame>
            <third_frame>   L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  :  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  V  L  V  H  V  Q  :  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E   : R  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A  G  I  L  I  K  T  T  A  I  S  *  *  I  L  L  W  S  F  F  Y  G  E  N  C  V  Y  S  P  S  K  F  E  F  V  S  F  F  V  C  F  L  *  Q  N  V  L  H  C  D  S  T  L  S  C  D  I  N  M  T  I  C  D  T  K  V  W  D  V  W  I  *  C  D  S  F  H  S  S  L  K  F  F  I  S  S  L  L  I  N  I  D  L  S  I  T  S  H  Q  L  T  S  G  Q  *  C  R  W  N  L  S  F  H  K  L  F  V  F  C  K  S  V  E  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70786" stop="70714"/>
                    <exon start="70628" stop="70524"/>
                    <exon start="70442" stop="70316"/>
                    <exon start="70200" stop="70050"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFFLLLLSMSIAYGIQGQLLEVTVVACNKLKDTEWISRQDPYVCLEYGSSKFRTRTCTDGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGKVQLQKVLSQGFDDTAWPLQRKNGRYIDKNNCYFLMNFAMVFLLRRELCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="70787" e_stop="70714"/>
            <exon e_start="70628" e_stop="70542"/>
            <exon e_start="70442" e_stop="70316"/>
            <exon e_start="70200" e_stop="69741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70787" e_stop="70714" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70628" e_stop="70542" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70541" i_stop="70443" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70442" e_stop="70316" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.983">
            <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="70200" e_stop="69741" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70787" stop="70714"/>
              <exon start="70628" stop="70542"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="69741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589719" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG : TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCC : ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA : GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCC</gDNA_template>
            <first_frame> R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  C :   C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P :   W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  :  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  V  Y  *  *  K  Q  L  L  F  L  D  E  F  C  Y  G  L  S  F  T  A  R  I  V  F  I  V  L  L  S  L  N  L  Y  L  F  L  F  V  F  F  D  K  M  F  Y  I  V  I  P  L  F  H  V  T  L  I  *  Q  F  A  T  P  R  S  G  M  Y  G  Y  D  V  I  L  F  I  H  H  *  S  S  S  F  H  H  Y  *  L  T  *  T  C  L  *  L  A  I  N  L  L  P  D  S  D  A  G  G  T  *  A  F  I  S  Y  L  Y  S  V  K  V  L  N  F  F  L  F  N  F  L  </first_frame>
            <second_frame>  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T   : V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F   : H  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K :   V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R  Y  I  D  K  N  N  C  Y  F  L  M  N  F  A  M  V  F  L  L  R  R  E  L  C  L  *  S  F  *  V  *  I  C  I  F  F  C  L  F  S  L  T  K  C  S  T  L  *  F  H  S  F  M  *  H  *  Y  D  N  L  R  H  Q  G  L  G  C  M  D  M  M  *  F  F  S  F  I  T  E  V  L  H  F  I  I  I  D  *  H  R  P  V  Y  N  *  P  S  T  Y  F  R  T  V  M  Q  V  E  L  K  L  S  *  A  I  C  I  L  *  K  C  *  I  F  F  C  S  T  F  S </second_frame>
            <third_frame>   L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  :  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  :  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E   : R  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A  G  I  L  I  K  T  T  A  I  S  *  *  I  L  L  W  S  F  F  Y  G  E  N  C  V  Y  S  P  S  K  F  E  F  V  S  F  F  V  C  F  L  *  Q  N  V  L  H  C  D  S  T  L  S  C  D  I  N  M  T  I  C  D  T  K  V  W  D  V  W  I  *  C  D  S  F  H  S  S  L  K  F  F  I  S  S  L  L  I  N  I  D  L  S  I  T  S  H  Q  L  T  S  G  Q  *  C  R  W  N  L  S  F  H  K  L  F  V  F  C  K  S  V  E  F  F  F  V  Q  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70786" stop="70714"/>
                    <exon start="70628" stop="70542"/>
                    <exon start="70442" stop="70316"/>
                    <exon start="70200" stop="70050"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFFLLLLSMSIAYGIQGQLLEVTVVACNKLKDTEWISRQDPYVCLEYGSSKFHGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGKVQLQKVLSQGFDDTAWPLQRKNGRYIDKNNCYFLMNFAMVFLLRRELCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="70793" e_stop="70714"/>
            <exon e_start="70628" e_stop="70524"/>
            <exon e_start="70442" e_stop="70316"/>
            <exon e_start="70200" e_stop="70129"/>
            <exon e_start="69332" e_stop="69287"/>
            <exon e_start="69192" e_stop="68874"/>
            <exon e_start="68791" e_stop="68672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="0.988"/>
          <exon-intron don_prob="0.958" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="70793" e_stop="70714" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70628" e_stop="70524" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70442" e_stop="70316" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.983">
            <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="70129" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69332" e_stop="69287" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.806" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69192" e_stop="68874" e_length="319"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68873" i_stop="68792" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.983">
            <gDNA_exon_boundary e_start="68791" e_stop="68672" e_length="120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70793" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68874"/>
              <exon start="68791" stop="68672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG : TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG : ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA : GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG : GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT : AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAG : GTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGTGCACAAACAAGTACTTGCTGAGTTTTCATTTATTAGTGTGGTATCATGT</gDNA_template>
            <first_frame> R  H  R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  C :   C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P  Y  S  Y  M  Y  R :   W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  :  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  :  A  C  R  R  S  S  T  N  N  A  L  C  K  Y  Q   : *  A  S  N  K  P  C  S  I  R  P  S  I  C  Y  T  N  S  W  I  I  S  I  F  S  S  S  T  T  C  S  F  S  P  N  T  F  W  L  S  S  T  I  S  L  F  H  S  L  A  S  F  S  I  L  S  S  F  S  L  F  H  S  P  T  T  S  S  S  I  S  F  N  I  S  L  S  P  S  I  G  C  L  S  F  T  L  L  I  I  C  V  S  A  S  A  L  S  T  T  G  L  L  L  S  P  R :   S  I  P  W  S  L  S  S  T  I  V  L  M  L  C  S  *  M  P  G  Q  G  L  C  T  N  K  Y  L  L  S  F  H  L  L  V  W  Y  H   </first_frame>
            <second_frame>  V  I  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T   : V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F  R  T  R  T  C  T   : D  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K :   V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R :   H  A  G  E  V  R  L  I  M  H  Y  A  N  T  N  :  K  P  A  T  S  H  A  Q  S  G  P  P  F  V  T  P  T  P  G  S  Y  P  Y  S  V  A  P  P  H  V  A  S  H  P  T  P  S  G  Y  P  A  P  S  P  Y  S  T  A  S  P  P  S  A  F  Y  P  A  S  P  Y  S  T  V  P  P  P  P  A  A  Y  H  S  T  S  L  Y  P  P  Q  S  A  A  Y  P  S  P  Y  S  S  S  A  Y  L  P  Q  P  Y  P  P  Q  G  Y  S  Y  P  P   : G  Q  Y  P  G  V  Y  P  P  R  S  Y  *  C  Y  V  L  K  C  L  D  K  D  C  A  Q  T  S  T  C  *  V  F  I  Y  *  C  G  I  M  </second_frame>
            <third_frame>   S  S  L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  :  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  V  L  V  H  V  Q  :  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E   : R  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A   : G  M  Q  E  K  F  D  *  *  C  T  M  Q  I  P  I :   S  Q  Q  Q  A  M  L  N  Q  A  L  H  L  L  H  Q  L  L  D  H  I  H  I  Q  *  L  H  H  M  *  L  L  T  Q  H  L  L  A  I  Q  H  H  L  L  I  P  Q  P  R  L  L  Q  H  F  I  Q  L  L  L  I  P  Q  S  H  H  L  Q  Q  H  I  I  Q  H  L  F  I  P  L  N  R  L  L  I  L  H  L  T  H  H  L  R  I  C  L  S  L  I  H  H  R  V  T  L  I  P  Q  :  V  N  T  L  E  S  I  L  H  D  R  I  D  A  M  F  L  N  A  W  T  R  I  V  H  K  Q  V  L  A  E  F  S  F  I  S  V  V  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70792" stop="70714"/>
                    <exon start="70628" stop="70524"/>
                    <exon start="70442" stop="70316"/>
                    <exon start="70200" stop="70129"/>
                    <exon start="69332" stop="69287"/>
                    <exon start="69192" stop="68874"/>
                    <exon start="68791" stop="68754"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIVVFFLLLLSMSIAYGIQGQLLEVTVVACNKLKDTEWISRQDPYVCLEYGSSKFRTRTCTDGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGKVQLQKVLSQGFDDTAWPLQRKNGRHAGEVRLIMHYANTNKPATSHAQSGPPFVTPTPGSYPYSVAPPHVASHPTPSGYPAPSPYSTASPPSAFYPASPYSTVPPPPAAYHSTSLYPPQSAAYPSPYSSSAYLPQPYPPQGYSYPPGQYPGVYPPRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="96309" PGL_stop="93787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96309" e_stop="96237"/>
            <exon e_start="95644" e_stop="95552"/>
            <exon e_start="95456" e_stop="95359"/>
            <exon e_start="95276" e_stop="94898"/>
            <exon e_start="93960" e_stop="93787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.829" e_score="0.946"/>
          <exon-intron don_prob="0.680" acc_prob="0.000" e_score="0.908"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.955"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="96309" e_stop="96237" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96236" i_stop="95645" i_length="592"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="95644" e_stop="95552" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.829">
            <gDNA_intron_boundary i_start="95551" i_stop="95457" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="95456" e_stop="95359" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.680" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95358" i_stop="95277" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="95276" e_stop="94898" e_length="379"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94897" i_stop="93961" i_length="937"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="93960" e_stop="93787" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96309" stop="96237"/>
              <exon start="95644" stop="95552"/>
              <exon start="95456" stop="95359"/>
              <exon start="95276" stop="94898"/>
              <exon start="93960" stop="93787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG : AAAATGTCTGAAACAAATGCAATGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG : GAGAAAGATAATGAGATAGTATAATCTAAGGATCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAACGCCTCAAATGAAGATACTATTA : TAGCCTGAAATGGAGGAAATTCAAAAACAAATAAGCATAAATGATGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCATGAACATCCAGGACGTCTAACACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGAAATTTGGAATCAATTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAAGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGTAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTTATCCTAACATATTGGAAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTCAAGGGGCTAAACAAG : GTGATGAAATCGAAGAAGGCGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTTAATGCTATAAAAAGATTTGTATATTTT</gDNA_template>
            <first_frame> K  K  A  W  S  Y  S  R  M  S  I  *  R  A  P  Q  I  L  E  F  *  K  I  Q   : E  N  V  *  N  K  C  N  E  S  K  K  T  D  E  S  T  H  C  W  Q  K  E  F  R  F  S  S  *  *  A   : G  E  R  *  *  D  S  I  I  *  G  S  L  W  L  Q  E  Q  E  N  L  V  V  C  T  T  P  Q  M  K  I  L  L  :  *  P  E  M  E  E  I  Q  K  Q  I  S  I  N  D  E  Y  V  D  A  F  S  S  V  M  G  H  E  H  P  G  R  L  T  L  Y  G  A  G  V  T  K  T  T  L  K  K  K  V  G  N  L  E  S  I  L  S  A  T  T  D  G  M  Q  Q  M  Q  E  K  M  Q  K  M  E  K  Q  M  E  E  Q  K  K  I  V  R  Q  E  V  I  V  D  V  I  A  Q  L  K  H  A  G  L  I  Y  P  N  I  L  E  A  L  S  T  P  S  P  R  E  S  T  F  V  Q  G  A  K  Q   : G  D  E  I  E  E  G  D  E  S  S  S  E  D  L  T  *  E  L  K  Y  I  L  M  *  T  L  L  M  F  *  K  S  Y  I  F  E  D  *  K  F  Y  G  M  C  F  T  F  F  *  C  Y  K  K  I  C  I  F  </first_frame>
            <second_frame>  K  K  P  G  H  I  P  E  C  Q  F  R  E  L  L  K  Y  W  N  S  E  K  F  K  :  K  M  S  E  T  N  A  M  N  R  K  K  L  M  N  P  H  T  A  G  K  K  S  F  A  L  V  R  N  K  L  :  E  K  D  N  E  I  V  *  S  K  D  L  C  G  Y  K  N  K  K  T  W  S  F  V  Q  R  L  K  *  R  Y  Y  Y :   S  L  K  W  R  K  F  K  N  K  *  A  *  M  M  S  M  L  M  H  F  Q  A  S  W  V  M  N  I  Q  D  V  *  H  Y  M  A  Q  E  L  Q  R  L  L  *  K  K  K  L  E  I  W  N  Q  F  *  V  Q  Q  L  M  E  C  S  K  C  K  R  R  C  R  K  W  R  N  K  W  R  N  K  R  K  L  C  D  K  K  L  L  *  M  L  L  H  N  L  S  M  Q  D  *  F  I  L  T  Y  W  K  H  C  R  L  L  H  Q  E  N  L  L  L  F  K  G  L  N  K  :  V  M  K  S  K  K  A  M  K  A  V  V  K  T  *  H  R  S  *  S  I  Y  *  C  K  L  Y  *  C  S  R  N  H  I  F  L  K  I  E  N  S  M  A  C  V  S  P  F  F  N  A  I  K  R  F  V  Y  F </second_frame>
            <third_frame>   K  S  L  V  I  F  Q  N  V  N  L  E  S  S  S  N  I  G  I  L  K  N  S  R :   K  C  L  K  Q  M  Q  *  I  E  K  N  *  *  I  H  T  L  L  A  K  R  V  S  L  *  F  V  I  S  W :   R  K  I  M  R  *  Y  N  L  R  I  F  V  V  T  R  T  R  K  P  G  R  L  Y  N  A  S  N  E  D  T  I   : I  A  *  N  G  G  N  S  K  T  N  K  H  K  *  *  V  C  *  C  I  F  K  R  H  G  S  *  T  S  R  T  S  N  T  I  W  R  R  S  Y  K  D  Y  F  E  K  K  S  W  K  F  G  I  N  F  K  C  N  N  *  W  N  A  A  N  A  R  E  D  A  E  N  G  E  T  N  G  G  T  K  E  N  C  A  T  R  S  Y  C  R  C  Y  C  T  T  *  A  C  R  I  N  L  S  *  H  I  G  S  I  V  D  S  F  T  K  R  I  Y  F  C  S  R  G  *  T  R :   *  *  N  R  R  R  R  *  K  Q  *  *  R  L  D  I  G  A  E  V  Y  I  D  V  N  F  I  D  V  L  E  I  I  Y  F  *  R  L  K  I  L  W  H  V  F  H  L  F  L  M  L  *  K  D  L  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95273" stop="94898"/>
                    <exon start="93960" stop="93911"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEMEEIQKQISINDEYVDAFSSVMGHEHPGRLTLYGAGVTKTTLKKKVGNLESILSATTDGMQQMQEKMQKMEKQMEEQKKIVRQEVIVDVIAQLKHAGLIYPNILEALSTPSPRESTFVQGAKQGDEIEEGDESSSEDLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 91 chains have been computed
$ 
$ memory statistics:
$ 33384 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 4769 bytes was the average size of a spliced alignment
$ 8904 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2968 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 109 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:35:50
-->
