##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C11HBa0107K14-AyMhX/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 104904, name = C11HBa0107K14.2) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	9294	9983	1	-	.	ID=g1
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	9294	9983	.	-	.	ID=g1.t1;Parent=g1
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	9294	9296	.	-	0	Parent=g1.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	9294	9983	.	-	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	9981	9983	.	-	0	Parent=g1.t1
# protein sequence = [MKERMERQKGVNPKIEPFVPKKGYDPRELKSWAKRTGFVSTTFSGETERGGGHSRRDFDNGRDLNVSSNENVGFDLER
# GVNKTETVSPKIELDPILGRARNRGVEIEPISGSNNEGLRNGRGRGRGKGENLGRRTEMEPILRGHNEERKDARNENGNDGDSANGAVNGNGNGHIAQ
# PATPVTEVPRKDDGNVDEEVGMGIYPNGEDPSYGGWHQSPRMKCGLRENPGVG]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	15781	16074	1	-	.	ID=g2
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	15781	16074	.	-	.	ID=g2.t1;Parent=g2
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	15781	15783	.	-	0	Parent=g2.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	15781	16074	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	16072	16074	.	-	0	Parent=g2.t1
# protein sequence = [MCYGGQRLPSKDDLTDPTRRTRTLPAANENAVVVENLRDRLAETEARLERARAREAELSRQLEEMKRYVCVMEILECY
# LKRRYREQQVRTLAVVNSK]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	26053	32620	1	+	.	ID=g3
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	26053	32620	.	+	.	ID=g3.t1;Parent=g3
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	26053	26055	.	+	0	Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	26053	27179	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	28050	28370	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	28796	28929	.	+	1	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	29287	29459	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	30626	30823	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	31717	31900	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	31981	32114	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	32203	32388	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	32525	32620	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	32618	32620	.	+	0	Parent=g3.t1
# protein sequence = [MAEQDPYANIFSQKNSRLADDTVFFSIYPDFTLNPTSPPTSITSQLQSLHLQILQNLSPFTSNYIWQHEPFTLTLSPG
# PTPPHLSGKLRYGDNLEDEWFVVFLLFETSKRFPSVSIRVWDSDGEFLLIETAFYLPRWVNPDTAMNRVFIRGGFLHIIPNSVIPTTPSIHEALNLLR
# NVSSTRAPEGVQRQLENRLKEYPNRAEKNVHKVRVRVPLSVAKVLKHEPCLISLAVEGFYDRDIDTMKFAAEMERFLGNGGSGEELVRVLVTMSRAMY
# AQLVQQTFQAPKCYPALPPRSDVGAYMEAELGMKIACGFEMIYQLKKRQGMDGKGSTWDAFRLSLERSGYFEGLLPGSKEYKRLMKNAEEYYKNSSLH
# ARESATLSAPVRRIDEILALPDSADDFKDQEIPPSDDDSWLYGGEDELNSVLQERQKEMELYNSKRKQKSKEQDGPSNHSDNFDLKDISNSMQAFVTK
# VASYEGAEVPEDRNVKEVDFDVDHFMKDLESFMRGQGNEDIGRDVDIEEGSSSDMEFDESEDESDIAEPHDDNDEGGAAFMHSYSDTLNDELKGTTLS
# NTFVRANGESESIKKDEERRRRQKIILKKSVMGTVGQEAAIDLLKSEIPAEEDEPLLLTGDVNTGLVLVDIVNGFCTVGAGNLAPVTPNRQISAMVDE
# SVKLAKVFCEKKWPIYALRDSHHPDVPEPPNPPHCIAGTDESELVPALQWLENEPNVTVRCKDCIDGFLGSIEKDGSNVFVNWVKANEIKIILVVGIC
# TDICVLDFVCSVLSARNRGFLSPLKDVIVYSPGCATYDLPVQIARNIKGALPHPQEFMHHIGLYMAKGRGAKVVSHISFDTTTNET]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	33236	45479	1	-	.	ID=g4
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	33236	45479	.	-	.	ID=g4.t1;Parent=g4
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	33236	33238	.	-	0	Parent=g4.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	33236	34480	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	34560	35962	.	-	2	ID=g4.t1.cds;Parent=g4.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	45089	45479	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	45477	45479	.	-	0	Parent=g4.t1
# protein sequence = [MNPLQDFGFGLKEQSDSLKFKSVRGANLASTTRKVKRKWKSREERKRVDEKYDVVLVPSDGVCLSGSESDDSDWSIGW
# LEPHAPDFQNDDEGDDSFAVLVPCYRHDCREIGEPNNQFLSAIENLSNGYPADMEEKVEDVIKLIEEDGDSFAKRAEMYYKKRPELINFVEESYRAYR
# ALAERYDKLSRELQSANNTIATLFPEQIQLAMDEEDDYGTPRMPKNFPQVPTTGANIPNVPPKAPVKDMKGLLKTGTLQFLGKKTANKARDANKETPK
# SGLTKDEALEEIDKLQRDILSLQTVKEFVKSSYQSGIAKTMEIEHQIVEKHQKICSLEDEFGEARVIEDDEARTLMAEAALKSCQETLAQLQEKQEQS
# TNEAKEEFKKIEEARKKLKSFRQKYLGDPADETEPDEKDDESAGVTDVSSQCTSLEEIGEKMESLHGKMNEQFDASSMSSLTVTQLAEKIDELVNKVV
# SLEAAVSTQTVLIERLRTEACGLHTHIRTLEDDKAATLTGDTHNLNVRVTMLEEKLKGIQDLNKDVETQNSSLKTHFAEAHNSLGQLSFKLTSVKPDE
# EVDETDSSQDEEEDLADIRLQNEPEKKENHLFSDKEVQEDTKSLKKHVEPLEPTVAEKGEERVSSKSESSVHHEQKPLEDEDKDDDLTWQQMLLTGLE
# DKEKILLTEYTTILRNYKELKRKLIEMEKKERDTEFEVTLQIRELKSTISKKDEEIESLRLKLSLVQGNASESSESKEEKHQDLNPSDDRSLKPEDTP
# KNEEKDEQDAKIILIDQCSSLSPVEEKLRMGIDALLDENLNFWLRFSSAFHQIQKFKTTAQDLQGEITTLKEKETKEGSSKTDMKSEIRPIYKHLREI
# QNELTVWLEQSLSLKDELKRRFSSLCSIQEEITKALKDGVEEDEIRFSSHQAAKFQGEVLNMKQENNKVREELEAGVEHVTTLQVDVEKTLRKLDHQF
# DVGGNQPQLTNSASRSRIPLRAFIFGTKVKKSKRSFFHHNRKYQVLKGGVPL]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	54834	58727	1	+	.	ID=g5
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	54834	58727	.	+	.	ID=g5.t1;Parent=g5
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	54834	54836	.	+	0	Parent=g5.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	54834	58727	.	+	0	ID=g5.t1.cds;Parent=g5.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	58725	58727	.	+	0	Parent=g5.t1
# protein sequence = [MDTVHEALDEAKLEIEKLRANYQSKAELCENLKRVNNELLTKNQEANLKVEKLTHELSGKEDELAVTEQLHEAIESKL
# KEKESAVKHLSSTNDKLRADIAEMLRKFEEENRGLALALDGANSTHMDQEQQIRSLEQEIEGLRASASQKKKSLEVDERRAKASKELRNKDDTLLEME
# QENRKLTDQLKWRNEHFIHLEEAHGKLRQQLKKCEEEKQGLALSLDGANSTNVDQERQIHFLKKEIEGLREFVSASQKKSSEDEKRAKASKELRHSED
# MLFEIEEENRKLEEQLKWKKEQFSYLEEAHGKLKQQLRRYEEDSRGMALALDGANAINLDQEQQIRSLKQEIEGLREFLSSSRKRSSEAEKRAKTSKE
# LRHNDDMLLDMEEEIKKLADQLKWKKESFSHLEEAHGRLRQQHQEEEKEWAKERSTLLDEISKLQTNLDSQLRISKDLENRLWMCNQALAHEESKKKL
# LEVQLVESKTSFNSVCAEYEESRSVIESLTSQRDKEIAHLRDILGSRDTLHKEMEYQFRRVEHENHELMTSLKELQEAKIQEAGASSSLSKLRNKLRG
# LEQVHKDCFGNLKAKEAEWASKLEKLTEELDICKFTVQSKETLITELRQELETCELLTLQLTLQNEETSMMLLVLKSQFFELHQRIADDYASMELEKR
# EGVDNISTLIKQLNTKNEALVRVQEDLEEEREKVAQLSEKIESLNSEEQQQLPLQREVDTLKEMLKVASTSQSHLKEQVLHTKSDLEQVRDALDRANE
# ELAESFEEGNELEFELQVWKSVAEKLKANLEENLQMRRQIEASLLAQADVEFDLKQERESLELELAEKDTRVNILQQQLFDQKREQTALLSENIEDKK
# TSQDLQKEVQYLEQEWVRKELEGAILAQVEAEKKHKKEKESLHQIVEEKDHRIYDLLKEVEYLEQEWVTKDLESAIFEHVEAETRHKKEKESLHQLVE
# EKDHRINVLQKEVEYLEQEWVRKELEGAIFEHMEAETQHKKEKESLHHLVEEKDHIINDLQKEVEYLEQEWVRKELEGAIFAKVEAETKHKKEKESLR
# QLVEEKNHRIYDLQRLVNSLENEFESSTSSFSASLSEMLAEVDMFHKTWEKMRTEEILKEIEIQMRNLVIVELENEFCKLQKEVEHLEKHMSNSVGKR
# TKLEDEMEAKRSEIDVLQFKLEKQVRSSDIVIKNLRKEKAKLLEDVMKLSSDKDKLLDTFMDLSERISRMSKEDMQLAGTLERMVQNCDNSMPGTDLK
# WDNEFYDPVKENNSRHPSTPTSTSTKRLEAILDERSPLRSLNN]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	62366	67610	1	+	.	ID=g6
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	62366	67610	.	+	.	ID=g6.t1;Parent=g6
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	62366	62368	.	+	0	Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	62366	62379	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	62471	62584	.	+	1	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	64338	64425	.	+	1	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	64556	64723	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	64812	64925	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	65824	65880	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	66645	67610	.	+	0	ID=g6.t1.cds;Parent=g6.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	67608	67610	.	+	0	Parent=g6.t1
# protein sequence = [MLVCRALDPMVLPTEASQIVKQRLLNFVKSLSTVLASAYCLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWS
# PTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTS
# HFEEYLCVKEAILLDLLRVIRHHRARLATPIRTVQKIYSDADLDNMTYDSAFSRGAASTRPLLLIEPSYKVNGEDRTKGRPIRVNGEEDTKEKATMKP
# APDSKVETKSRPASDPKIKETLPANSNGKDVPLSDLKLDPKVDKMAHAESKDDIKASSDPKSSKATVKNTSQPVPKAELKSAEVGTSDSKDPPENISS
# NKQVEKVSQGIGRTTNVVDNSATSPSDVREKTGNVPSTSLPKREDEKQQVSQPSVPSKPALEENIVLGVALEGSKRTLPIEEELSPPPNPAESKEMAT
# SRSSSNASTIAEKDKQDGQRSNRPNSTAPDQSSKDN]
###
###
C11HBa0107K14.2	AUGUSTUS_ab_initio	gene	69944	71885	1	-	.	ID=g7
C11HBa0107K14.2	AUGUSTUS_ab_initio	transcript	69944	71885	.	-	.	ID=g7.t1;Parent=g7
C11HBa0107K14.2	AUGUSTUS_ab_initio	stop_codon	69944	69946	.	-	0	Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	69944	70198	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	70434	70704	.	-	1	ID=g7.t1.cds;Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	71089	71292	.	-	1	ID=g7.t1.cds;Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	71372	71463	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	CDS	71808	71885	.	-	0	ID=g7.t1.cds;Parent=g7.t1
C11HBa0107K14.2	AUGUSTUS_ab_initio	start_codon	71883	71885	.	-	0	Parent=g7.t1
# protein sequence = [MKNSHGFGHLWNTKDGNLVLNLMLHPKICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAI
# VKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRL
# RFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLL
# AALGFDNNTRLYLASHKVFTEVLHL]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C11HBa0107K14-AyMhX/AUGUSTUS_ab_initio/seq_with_defline_removed