##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C11HBa0119D16-WY1n2/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 117316, name = C11HBa0119D16.2) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C11HBa0119D16.2	AUGUSTUS_ab_initio	gene	79	38463	1	+	.	ID=g1
C11HBa0119D16.2	AUGUSTUS_ab_initio	transcript	79	38463	.	+	.	ID=g1.t1;Parent=g1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	79	402	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	2383	2496	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	2581	2750	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	8035	8117	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	27299	27519	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	34944	35033	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	37787	37900	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	38218	38463	.	+	0	ID=g1.t1.cds;Parent=g1.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	stop_codon	38461	38463	.	+	0	Parent=g1.t1
# protein sequence = [DFSGDDSDVESRRDIHVQGVTLKPTVNTQPHAVSNVPFSEQLERCGNEVDDPCELAGSESQRSMGGILPSMDPAHGIS
# RRDSSADKSSSKLTPPNLNVKKSTFWGRSNVARLQEQLQAERDLRAALEVGLSMSSGQLSGTRDMDSKTRAELEEIALAEADVARLKQKVAELHHQLN
# QQRQHHYGSLSDACERFQNGPNHNSQFVVKSARHRAFGEWRGEARLCRHYPLRRGDEERAEVSDLPTFREFTVEQLRISTSGFAVENIVSEHGEKAPN
# VVYKGKLENQRRVAVKRFNRSAWPDSRQFLALDLIKDRNLQMLTDSCLEGQFSSDDGTELLSFQMWTNQMQETLNSKKKGDSAFRHKDAKAAIECYTL
# FIDVGTMVSPTVYARRSLSYLMNDMPLEALNDAVQAQVISPVWHVASYLQAASLFALGRENEAQIALKEGSVLEEKKNTNS]
###
###
C11HBa0119D16.2	AUGUSTUS_ab_initio	gene	61505	62087	1	+	.	ID=g2
C11HBa0119D16.2	AUGUSTUS_ab_initio	transcript	61505	62087	.	+	.	ID=g2.t1;Parent=g2
C11HBa0119D16.2	AUGUSTUS_ab_initio	start_codon	61505	61507	.	+	0	Parent=g2.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	61505	61646	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	61745	61944	.	+	2	ID=g2.t1.cds;Parent=g2.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	62022	62087	.	+	0	ID=g2.t1.cds;Parent=g2.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	stop_codon	62085	62087	.	+	0	Parent=g2.t1
# protein sequence = [MASNQTHQRAANNSRRTSNERRQPSAHSHRQHVSLLYIPLPHPSPLSQTGSISDQQRLEETAAAASRGDSSIDSGEPF
# LFLCFQPTSSANERRGFYTYLNIAADFKMNFNRSVWKYFVMNIKPYCDLLDLMDCSC]
###
###
C11HBa0119D16.2	AUGUSTUS_ab_initio	gene	65961	66701	1	+	.	ID=g3
C11HBa0119D16.2	AUGUSTUS_ab_initio	transcript	65961	66701	.	+	.	ID=g3.t1;Parent=g3
C11HBa0119D16.2	AUGUSTUS_ab_initio	start_codon	65961	65963	.	+	0	Parent=g3.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	65961	66701	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	stop_codon	66699	66701	.	+	0	Parent=g3.t1
# protein sequence = [MLARGGKTLVPMILAEILRALTACTKGKRYFEGCNFLLQLWAVEHFYQRANKVDIVRWTMGNKIINHPLRMKHFISPV
# GTEDWFTYLKERSAVEIQWKYYWLKPRRAIIRGNELYFIELIGLNGVQPYAPLRVLRQFGQIQMIPLRSHMSHYGYDFGSELPQVNTILRRWKNVITI
# DVQEHRPFCTPEYYVWLLEDAEHRDLSEGGLPGFGDEKERRWARNLLNTDYDITLEMKKQIVPNIGEQHD]
###
###
C11HBa0119D16.2	AUGUSTUS_ab_initio	gene	77773	92166	1	+	.	ID=g4
C11HBa0119D16.2	AUGUSTUS_ab_initio	transcript	77773	92166	.	+	.	ID=g4.t1;Parent=g4
C11HBa0119D16.2	AUGUSTUS_ab_initio	start_codon	77773	77775	.	+	0	Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	77773	77914	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	78013	78212	.	+	2	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	87981	88032	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	88377	88526	.	+	2	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	88799	89010	.	+	2	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	91273	91393	.	+	0	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	91898	91985	.	+	2	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	CDS	92076	92166	.	+	1	ID=g4.t1.cds;Parent=g4.t1
C11HBa0119D16.2	AUGUSTUS_ab_initio	stop_codon	92164	92166	.	+	0	Parent=g4.t1
# protein sequence = [MASNQTHQRAANNSRRTSNERRQPSAHSHRQHVSLLFIPLPHPSPLSQTGSISDQQRLEETAAAASRGDSSIDSGEPF
# LFLCFQPTSSANERRGFYTYLNIAADFKMNFNRSVWVSDDIKVIDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPVD
# GSLSAGINSFKFFLAYKGSFMVNDELLMEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEATARAIRLASFVNTPLYV
# VHVMSIDAMEEIARARKSGQRIVGEPVVSGLLLNDSVLWDPDFHFAARYVMSPPIRAAGHGTALQAALAAGVLQVSV]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C11HBa0119D16-WY1n2/AUGUSTUS_ab_initio/seq_with_defline_removed