psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 494 1 0 0 1 1 3 931 - SGN-E551775 590 0 496 C11HBa0029C01.2 121824 65753 67179 5 183,159,75,57,21, 94,278,437,512,569, 65753,65936,66793,67013,67158, 37 0 0 2 1 17 1 1 + SGN-E551776 595 513 569 C11HBa0029C01.2 121824 65156 65196 2 24,15, 513,554, 65156,65181, 353 0 0 0 0 0 3 3128 - SGN-E207596 353 0 353 C11HBa0029C01.2 121824 105679 109160 4 104,79,93,77, 0,104,183,276, 105679,106682,108897,109083, 135 7 0 0 2 83 2 927 - SGN-E209569 274 49 274 C11HBa0029C01.2 121824 68704 69773 3 79,12,51, 0,161,174, 68704,69000,69722, 654 0 0 1 0 0 6 1348 - SGN-E211266 669 14 669 C11HBa0029C01.2 121824 68303 70306 7 122,90,126,54,81,108,74, 0,122,212,338,392,473,581, 68303,68525,68699,68960,69723,69913,70232, 721 4 0 0 0 0 5 1853 + SGN-E578425 725 0 725 C11HBa0029C01.2 121824 65759 68337 6 336,75,57,114,108,35, 0,336,411,468,582,690, 65759,66793,67013,67158,68087,68302, 94 8 0 0 0 0 1 1 + SGN-E375016 442 303 405 C11HBa0029C01.2 121824 89245 89348 2 98,4, 303,401, 89245,89344, 35 2 0 0 0 0 0 0 - SGN-E376541 619 577 614 C11HBa0029C01.2 121824 26521 26558 1 37, 5, 26521, 74 5 0 0 0 0 0 0 + SGN-E376738 749 62 141 C11HBa0029C01.2 121824 84946 85025 1 79, 62, 84946, 49 3 0 0 0 0 1 1 - SGN-E392422 609 123 175 C11HBa0029C01.2 121824 26022 26075 2 31,21, 434,465, 26022,26054, 94 8 0 0 0 0 1 1 + SGN-E392694 446 306 408 C11HBa0029C01.2 121824 89245 89348 2 98,4, 306,404, 89245,89344, 704 0 0 0 0 0 3 1862 + SGN-E541419 783 72 776 C11HBa0029C01.2 121824 0 2566 4 35,135,150,384, 72,107,242,392, 0,1310,1729,2182, 41 0 0 0 0 0 0 0 - SGN-E543727 758 614 655 C11HBa0029C01.2 121824 26529 26570 1 41, 103, 26529, 745 3 0 0 1 2 6 1140 - SGN-E546010 750 0 750 C11HBa0029C01.2 121824 65541 67429 7 13,174,159,75,57,227,43, 0,13,187,346,421,478,707, 65541,65761,65936,66793,67013,67158,67386, 124 4 0 0 2 40 2 7 - SGN-E546463 271 30 198 C11HBa0029C01.2 121824 101925 102060 4 47,19,58,4, 73,159,178,237, 101925,101976,101998,102056, 434 3 0 0 0 0 4 822 - SGN-E546464 703 266 703 C11HBa0029C01.2 121824 102160 103419 5 28,113,135,91,70, 0,28,141,276,367, 102160,102276,102885,103112,103349, 732 13 0 0 1 1 0 0 - SGN-E549301 746 0 746 C11HBa0029C01.2 121824 71970 72715 2 684,61, 0,685, 71970,72654, 458 1 0 0 0 0 3 931 - SGN-E237738 459 0 459 C11HBa0029C01.2 121824 65878 67268 4 217,75,57,110, 0,217,292,349, 65878,66793,67013,67158, 527 20 0 3 3 22 6 2990 - SGN-E720938 749 177 749 C11HBa0029C01.2 121824 69916 73456 7 105,70,64,234,58,8,11, 0,105,176,240,474,537,561, 69916,70232,71533,71849,73358,73435,73445, 718 0 0 0 0 0 3 1862 + SGN-E733033 747 29 747 C11HBa0029C01.2 121824 0 2580 4 35,135,150,398, 29,64,199,349, 0,1310,1729,2182, 384 0 0 0 0 0 1 122 + SGN-E244185 401 0 384 C11HBa0029C01.2 121824 91889 92395 2 87,297, 0,87, 91889,92098, 31 1 0 1 0 0 0 0 - SGN-E242278 536 499 532 C11HBa0029C01.2 121824 26521 26554 1 33, 4, 26521, 480 0 0 0 0 0 2 1527 - SGN-E246965 480 0 480 C11HBa0029C01.2 121824 71550 73557 3 47,234,199, 0,47,281, 71550,71849,73358, 555 0 0 0 0 0 4 1572 - SGN-E251431 555 0 555 C11HBa0029C01.2 121824 102302 104429 5 87,135,91,69,173, 0,87,222,313,382, 102302,102885,103112,103349,104256, 632 0 0 0 0 0 5 1660 - SGN-E256113 632 0 632 C11HBa0029C01.2 121824 102143 104435 6 45,113,135,91,69,179, 0,45,158,293,384,453, 102143,102276,102885,103112,103349,104256, 60 3 0 0 0 0 0 0 - SGN-E257886 428 333 396 C11HBa0029C01.2 121824 67158 67221 1 63, 32, 67158, 563 0 0 0 0 0 5 1573 - SGN-E264264 563 0 563 C11HBa0029C01.2 121824 102299 104435 6 90,135,91,69,107,71, 0,90,225,316,385,492, 102299,102885,103112,103349,104256,104364, 381 5 0 0 0 0 3 1082 - SGN-E267663 386 0 386 C11HBa0029C01.2 121824 105271 106739 4 13,75,241,57, 0,13,88,329, 105271,105367,105542,106682, 561 2 0 0 0 0 6 1244 - SGN-E265067 563 0 563 C11HBa0029C01.2 121824 68124 69931 7 71,123,90,126,54,81,18, 0,71,194,284,410,464,545, 68124,68302,68525,68699,68960,69723,69913, 480 4 0 0 2 2 4 2969 - SGN-E265019 486 0 486 C11HBa0029C01.2 121824 69997 73450 6 15,7,73,63,234,92, 0,16,24,97,160,394, 69997,70012,70231,71534,71849,73358, 598 0 0 0 1 1 5 3077 - SGN-E265020 599 0 599 C11HBa0029C01.2 121824 69775 73450 7 17,12,108,72,63,234,92, 0,18,30,138,210,273,507, 69775,69792,69913,70232,71534,71849,73358, 566 0 0 0 0 0 5 1660 - SGN-E267630 566 0 566 C11HBa0029C01.2 121824 102138 104364 6 50,113,135,91,69,108, 0,50,163,298,389,458, 102138,102276,102885,103112,103349,104256, 416 0 0 0 0 0 1 698 - SGN-E279118 447 0 416 C11HBa0029C01.2 121824 65753 66867 2 342,74, 31,373, 65753,66793, 314 1 0 0 0 0 3 888 - SGN-E269720 315 0 315 C11HBa0029C01.2 121824 104423 105626 4 21,135,75,84, 0,21,156,231, 104423,105149,105367,105542, 47 4 0 0 0 0 0 0 - SGN-E269515 232 87 138 C11HBa0029C01.2 121824 69722 69773 1 51, 94, 69722, 432 1 0 0 0 0 2 843 - SGN-E294718 433 0 433 C11HBa0029C01.2 121824 65765 67041 3 330,75,28, 0,330,405, 65765,66793,67013, 432 1 0 0 0 0 2 843 + SGN-E294719 433 0 433 C11HBa0029C01.2 121824 65765 67041 3 330,75,28, 0,330,405, 65765,66793,67013, 226 15 0 0 2 221 3 1258 - SGN-E296057 514 28 490 C11HBa0029C01.2 121824 68522 70021 4 93,84,51,13, 24,117,296,473, 68522,68699,69722,70008, 554 1 0 0 0 0 4 3228 - SGN-E301261 555 0 555 C11HBa0029C01.2 121824 105373 109156 5 69,241,79,93,73, 0,69,310,389,482, 105373,105542,106682,108897,109083, 463 3 0 0 0 0 3 3128 - SGN-E301350 467 1 467 C11HBa0029C01.2 121824 105563 109157 4 220,79,93,74, 0,220,299,392, 105563,106682,108897,109083, 470 4 0 0 0 0 3 3128 - SGN-E304474 474 0 474 C11HBa0029C01.2 121824 105562 109164 4 221,79,93,81, 0,221,300,393, 105562,106682,108897,109083, 758 0 0 0 1 1 6 4022 - SGN-E327436 759 0 759 C11HBa0029C01.2 121824 104385 109165 8 59,64,71,75,241,79,87,82, 0,59,124,195,270,511,590,677, 104385,105149,105213,105367,105542,106682,108897,109083, 671 5 0 0 0 0 5 3077 - SGN-E327687 687 0 676 C11HBa0029C01.2 121824 69722 73475 6 82,108,72,63,234,117, 11,93,201,273,336,570, 69722,69913,70232,71534,71849,73358, 594 0 0 0 0 0 5 3077 - SGN-E323629 594 0 594 C11HBa0029C01.2 121824 69780 73451 6 24,108,72,63,234,93, 0,24,132,204,267,501, 69780,69913,70232,71534,71849,73358, 273 5 0 0 0 0 1 1275 - SGN-E324635 278 0 278 C11HBa0029C01.2 121824 71924 73477 2 159,119, 0,159, 71924,73358, 646 3 0 0 0 0 7 2730 - SGN-E313788 649 0 649 C11HBa0029C01.2 121824 68540 71919 8 75,126,54,81,108,72,63,70, 0,75,201,255,336,444,516,579, 68540,68699,68960,69723,69913,70232,71534,71849, 472 0 0 0 0 0 4 1772 - SGN-E338060 472 0 472 C11HBa0029C01.2 121824 103188 105432 5 15,69,188,135,65, 0,15,84,272,407, 103188,103349,104256,105149,105367, 716 6 0 0 3 3 7 2731 - SGN-E334757 725 0 725 C11HBa0029C01.2 121824 68597 72050 11 17,126,54,81,28,80,72,63,150,40,11, 0,17,143,197,278,307,387,459,522,673,714, 68597,68699,68960,69723,69913,69941,70232,71534,71849,71999,72039, 482 0 0 1 0 0 1 1275 - SGN-E335794 483 0 483 C11HBa0029C01.2 121824 71943 73701 2 140,343, 0,140, 71943,73358, 725 0 0 1 1 1 7 2730 - SGN-E343194 727 0 727 C11HBa0029C01.2 121824 68592 72048 9 23,83,43,54,81,108,72,63,199, 0,23,107,150,204,285,393,465,528, 68592,68699,68782,68960,69723,69913,70232,71534,71849, 702 3 0 1 2 2 5 3077 - SGN-E348414 709 1 709 C11HBa0029C01.2 121824 69778 73561 8 11,15,108,38,34,63,234,203, 0,12,27,135,174,208,271,505, 69778,69789,69913,70232,70270,71534,71849,73358, 66 4 0 0 0 0 0 0 + SGN-E354627 680 0 70 C11HBa0029C01.2 121824 31787 31857 1 70, 0, 31787, 505 0 0 0 0 0 4 1267 - SGN-E354779 505 0 505 C11HBa0029C01.2 121824 65417 67189 5 8,334,75,57,31, 0,8,342,417,474, 65417,65761,66793,67013,67158, 35 0 0 0 0 0 1 1 - SGN-E349564 765 717 752 C11HBa0029C01.2 121824 26529 26565 2 31,4, 13,44, 26529,26561, 35 0 0 0 0 0 1 1 - SGN-E349310 765 717 752 C11HBa0029C01.2 121824 26529 26565 2 31,4, 13,44, 26529,26561, 505 0 0 0 0 0 4 1267 - SGN-E350355 505 0 505 C11HBa0029C01.2 121824 65417 67189 5 8,334,75,57,31, 0,8,342,417,474, 65417,65761,66793,67013,67158, 343 6 0 0 0 0 2 1277 - SGN-E361454 349 0 349 C11HBa0029C01.2 121824 71943 73569 3 140,48,161, 0,140,188, 71943,73358,73408, 785 14 0 0 1 38 7 1663 - SGN-E691104 926 4 841 C11HBa0029C01.2 121824 101922 104384 8 29,22,212,113,135,91,69,128, 85,114,174,386,499,634,725,794, 101922,101953,101976,102276,102885,103112,103349,104256, 729 13 0 0 1 38 7 1663 - SGN-E694944 869 0 780 C11HBa0029C01.2 121824 101922 104327 8 29,22,212,113,135,91,69,71, 89,118,178,390,503,638,729,798, 101922,101953,101976,102276,102885,103112,103349,104256, 355 3 0 0 0 0 1 1 - SGN-E692070 403 35 393 C11HBa0029C01.2 121824 65738 66097 2 197,161, 10,207, 65738,65936, 560 13 0 0 2 2 0 0 - SGN-E355845 575 0 575 C11HBa0029C01.2 121824 72141 72714 3 68,445,60, 0,69,515, 72141,72209,72654, 267 2 0 0 0 0 2 238 - SGN-E358857 534 265 534 C11HBa0029C01.2 121824 102912 103419 3 108,91,70, 0,108,199, 102912,103112,103349,