psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 116 1 0 0 0 0 0 0 - SGN-E746860 2163 1773 1890 C11HBa0064J13.2 118521 31211 31328 1 117, 273, 31211, 106 1 0 0 2 43 2 55 + SGN-E746293 1855 18 168 C11HBa0064J13.2 118521 99453 99615 3 16,9,82, 18,48,86, 99453,99470,99533, 147 4 0 0 1 8 1 98 - SGN-E553881 820 37 196 C11HBa0064J13.2 118521 69099 69348 2 81,70, 624,713, 69099,69278, 416 0 0 0 0 0 2 970 + SGN-E204815 416 0 416 C11HBa0064J13.2 118521 6647 8033 3 270,80,66, 0,270,350, 6647,7766,7967, 337 5 0 0 0 0 1 1091 - SGN-E207820 372 0 342 C11HBa0064J13.2 118521 11175 12608 2 193,149, 30,223, 11175,12459, 292 4 0 0 4 20 3 87 + SGN-E577892 726 127 443 C11HBa0064J13.2 118521 99219 99602 6 250,10,7,7,7,15, 127,390,401,408,420,428, 99219,99469,99560,99571,99578,99587, 48 0 0 0 1 69 2 317 - SGN-E577892 726 55 172 C11HBa0064J13.2 118521 99242 99607 3 22,11,15, 554,645,656, 99242,99463,99592, 147 4 0 0 1 8 1 98 - SGN-E320974 580 60 219 C11HBa0064J13.2 118521 69099 69348 2 81,70, 361,450, 69099,69278, 480 0 0 0 0 0 2 2805 - SGN-E311712 480 0 480 C11HBa0064J13.2 118521 9413 12698 3 25,216,239, 0,25,241, 9413,11152,12459, 538 29 0 0 5 42 1 642 - SGN-E368099 669 0 609 C11HBa0064J13.2 118521 3584 4793 7 85,17,212,92,38,9,114, 60,147,166,379,471,518,555, 3584,3669,3686,3898,4632,4670,4679, 288 17 0 0 2 24 1 1 - SGN-E368100 579 250 579 C11HBa0064J13.2 118521 4873 5179 3 217,63,25, 0,235,304, 4873,5091,5154, 700 0 0 0 0 0 4 3242 + SGN-E374651 719 15 715 C11HBa0064J13.2 118521 8661 12603 5 92,120,128,216,144, 15,107,227,355,571, 8661,8920,9310,11152,12459, 695 0 0 0 0 0 5 2016 + SGN-E374652 695 0 695 C11HBa0064J13.2 118521 6647 9358 6 270,80,87,90,120,48, 0,270,350,437,527,647, 6647,7766,7967,8663,8920,9310, 398 6 0 0 0 0 2 970 + SGN-E378148 404 0 404 C11HBa0064J13.2 118521 6647 8021 3 270,80,54, 0,270,350, 6647,7766,7967, 94 1 0 0 1 9 1 267 + SGN-E391663 624 294 398 C11HBa0064J13.2 118521 99253 99615 2 13,82, 294,316, 99253,99533, 94 1 0 0 1 9 1 267 + SGN-E396524 672 294 398 C11HBa0064J13.2 118521 99253 99615 2 13,82, 294,316, 99253,99533, 586 0 0 0 0 0 2 2805 - SGN-E200123 597 7 593 C11HBa0064J13.2 118521 9310 12701 3 128,216,242, 4,132,348, 9310,11152,12459, 33 2 0 0 0 0 0 0 + SGN-E736109 732 499 534 C11HBa0064J13.2 118521 71137 71172 1 35, 499, 71137, 33 2 0 0 0 0 0 0 + SGN-E740444 732 499 534 C11HBa0064J13.2 118521 71137 71172 1 35, 499, 71137, 808 0 0 0 0 0 5 3275 - SGN-E702306 808 0 808 C11HBa0064J13.2 118521 8621 12704 6 7,92,120,128,216,245, 0,7,99,219,347,563, 8621,8661,8920,9310,11152,12459, 848 1 0 0 0 0 5 3275 - SGN-E702791 849 0 849 C11HBa0064J13.2 118521 8621 12745 6 7,92,120,128,216,286, 0,7,99,219,347,563, 8621,8661,8920,9310,11152,12459, 132 4 0 0 1 8 1 98 - SGN-E704803 855 0 144 C11HBa0064J13.2 118521 69099 69333 2 81,55, 711,800, 69099,69278, 849 0 0 0 0 0 5 3851 - SGN-E705299 849 0 849 C11HBa0064J13.2 118521 8008 12708 6 46,90,120,128,216,249, 0,46,136,256,384,600, 8008,8663,8920,9310,11152,12459, 846 3 0 0 0 0 0 0 - SGN-E713468 866 4 853 C11HBa0064J13.2 118521 75129 75978 1 849, 13, 75129, 510 0 0 0 0 0 3 1579 - SGN-E715723 523 0 510 C11HBa0064J13.2 118521 6652 8741 4 265,80,87,78, 13,278,358,445, 6652,7766,7967,8663, 106 1 0 0 2 43 2 55 + SGN-E247286 435 247 397 C11HBa0064J13.2 118521 99453 99615 3 16,9,82, 247,277,315, 99453,99470,99533, 125 3 0 0 1 8 1 98 - SGN-E247819 572 0 136 C11HBa0064J13.2 118521 69099 69325 2 81,47, 436,525, 69099,69278, 115 2 0 0 0 0 0 0 + SGN-E249155 670 168 285 C11HBa0064J13.2 118521 31211 31328 1 117, 168, 31211, 81 1 0 0 0 0 0 0 + SGN-E250948 237 28 110 C11HBa0064J13.2 118521 99533 99615 1 82, 28, 99533, 106 1 0 0 2 43 2 55 + SGN-E251023 583 172 322 C11HBa0064J13.2 118521 99453 99615 3 16,9,82, 172,202,240, 99453,99470,99533, 81 1 0 0 0 0 0 0 + SGN-E255789 487 268 350 C11HBa0064J13.2 118521 99533 99615 1 82, 268, 99533, 34 0 0 0 0 0 0 0 + SGN-E258761 567 0 34 C11HBa0064J13.2 118521 99581 99615 1 34, 0, 99581, 34 0 0 0 0 0 0 0 + SGN-E262911 777 0 34 C11HBa0064J13.2 118521 99581 99615 1 34, 0, 99581, 169 7 0 0 2 149 2 99 + SGN-E279150 419 0 325 C11HBa0064J13.2 118521 69104 69379 4 76,72,10,18, 0,84,297,307, 69104,69278,69350,69361, 368 2 0 1 2 3 3 1093 + SGN-E280193 381 0 374 C11HBa0064J13.2 118521 11237 12701 5 18,13,48,50,242, 0,19,32,82,132, 11237,11255,11269,11318,12459, 106 1 0 0 2 43 2 55 + SGN-E269527 533 17 167 C11HBa0064J13.2 118521 99453 99615 3 16,9,82, 17,47,85, 99453,99470,99533, 443 0 0 0 1 2 1 1091 - SGN-E278095 457 0 445 C11HBa0064J13.2 118521 11152 12686 3 216,214,13, 12,228,444, 11152,12459,12673, 147 4 0 0 1 8 1 98 - SGN-E302304 594 60 219 C11HBa0064J13.2 118521 69099 69348 2 81,70, 375,464, 69099,69278, 33 2 0 0 0 0 0 0 + SGN-E305348 499 10 45 C11HBa0064J13.2 118521 71137 71172 1 35, 10, 71137, 94 1 0 0 1 9 1 267 + SGN-E302012 460 287 391 C11HBa0064J13.2 118521 99253 99615 2 13,82, 287,309, 99253,99533, 532 4 0 0 2 2 2 1307 - SGN-E307354 538 0 538 C11HBa0064J13.2 118521 76196 78039 5 37,459,3,30,7, 0,38,497,501,531, 76196,76233,77684,77687,78032, 414 12 0 0 0 0 1 992 - SGN-E308921 426 0 426 C11HBa0064J13.2 118521 76297 77715 2 395,31, 0,395, 76297,77684, 713 1 0 0 0 0 0 0 + SGN-E333016 714 0 714 C11HBa0064J13.2 118521 3542 4256 1 714, 0, 3542, 106 1 0 0 2 43 2 55 + SGN-E331585 525 172 322 C11HBa0064J13.2 118521 99453 99615 3 16,9,82, 172,202,240, 99453,99470,99533, 452 1 0 0 0 0 1 992 - SGN-E315372 453 0 453 C11HBa0064J13.2 118521 76284 77729 2 408,45, 0,408, 76284,77684, 742 1 0 1 0 0 4 3242 - SGN-E315732 744 0 744 C11HBa0064J13.2 118521 8703 12689 5 50,120,128,216,230, 0,50,170,298,514, 8703,8920,9310,11152,12459, 42 1 0 0 0 0 1 1 - SGN-E317365 767 240 283 C11HBa0064J13.2 118521 31051 31095 2 38,5, 484,522, 31051,31090, 492 0 0 0 0 0 0 0 + SGN-E338553 492 0 492 C11HBa0064J13.2 118521 1686 2178 1 492, 0, 1686, 725 0 0 0 0 0 6 3730 - SGN-E345347 725 0 725 C11HBa0064J13.2 118521 6872 11327 7 45,80,87,90,120,128,175, 0,45,125,212,302,422,550, 6872,7766,7967,8663,8920,9310,11152, 714 0 0 1 2 2 1 74 + SGN-E346659 717 0 717 C11HBa0064J13.2 118521 73912 74701 4 159,237,267,52, 0,160,397,665, 73912,74071,74382,74649, 239 12 0 0 2 15 1 2 + SGN-E352130 628 362 628 C11HBa0064J13.2 118521 89908 90161 4 79,5,30,137, 362,443,448,491, 89908,89987,89994,90024, 242 11 0 0 3 263 5 398 - SGN-E352130 628 0 516 C11HBa0064J13.2 118521 93642 94293 6 12,4,11,17,54,155, 112,124,203,230,419,473, 93642,93655,93690,93773,94083,94138, 547 0 0 0 0 0 0 0 - SGN-E354931 555 0 547 C11HBa0064J13.2 118521 75066 75613 1 547, 8, 75066, 55 4 0 0 0 0 0 0 + SGN-E350862 536 401 460 C11HBa0064J13.2 118521 90320 90379 1 59, 401, 90320, 136 8 0 0 0 0 1 1 - SGN-E350862 536 0 144 C11HBa0064J13.2 118521 94083 94228 2 54,90, 392,446, 94083,94138, 844 10 0 0 0 0 5 3851 - SGN-E690744 857 3 857 C11HBa0064J13.2 118521 7998 12703 6 56,90,120,128,216,244, 0,56,146,266,394,610, 7998,8663,8920,9310,11152,12459, 751 8 0 0 1 3 7 2018 - SGN-E694584 776 0 762 C11HBa0064J13.2 118521 6637 9414 9 4,144,28,102,80,87,90,120,104, 14,18,165,193,295,375,462,552,672, 6637,6642,6786,6815,7766,7967,8663,8920,9310, 495 28 0 0 5 42 1 642 + SGN-E691597 747 182 747 C11HBa0064J13.2 118521 3584 4749 7 85,17,212,92,39,8,70, 182,269,288,501,593,641,677, 3584,3669,3686,3898,4632,4671,4679, 513 29 0 0 4 70 1 8 + SGN-E695437 790 5 617 C11HBa0064J13.2 118521 4629 5179 5 42,122,291,62,25, 5,92,216,524,592, 4629,4679,4801,5092,5154,