psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 34 1 0 0 0 0 1 2 - SGN-E744997 776 722 757 C11HBa0139J14.2 118142 48625 48662 2 25,10, 19,44, 48625,48652, 322 4 0 0 0 0 0 0 + SGN-E744913 354 28 354 C11HBa0139J14.2 118142 52849 53175 1 326, 28, 52849, 586 1 0 0 0 0 0 0 - SGN-E688435 587 0 587 C11HBa0139J14.2 118142 21687 22274 1 587, 0, 21687, 582 1 0 0 0 0 0 0 - SGN-E207004 583 0 583 C11HBa0139J14.2 118142 21690 22273 1 583, 0, 21690, 540 1 0 0 0 0 3 723 - SGN-E206980 541 0 541 C11HBa0139J14.2 118142 24951 26215 4 97,218,177,49, 0,97,315,492, 24951,25519,25875,26166, 298 1 0 0 0 0 1 4305 - SGN-E210415 299 0 299 C11HBa0139J14.2 118142 101635 106239 2 166,133, 0,166, 101635,106106, 639 1 0 0 0 0 2 4720 - SGN-E210503 640 0 640 C11HBa0139J14.2 118142 100879 106239 3 199,308,133, 0,199,507, 100879,101493,106106, 224 0 0 0 0 0 2 252 - SGN-E210574 224 0 224 C11HBa0139J14.2 118142 25723 26199 3 14,177,33, 0,14,191, 25723,25875,26166, 695 1 0 1 0 0 4 1607 - SGN-E212157 697 0 697 C11HBa0139J14.2 118142 23911 26215 5 120,133,218,177,49, 0,120,253,471,648, 23911,24915,25519,25875,26166, 613 11 0 2 1 4 5 998 - SGN-E213609 630 0 630 C11HBa0139J14.2 118142 26212 27836 6 62,76,122,235,90,41, 0,62,138,260,499,589, 26212,26464,27038,27298,27639,27795, 79 6 0 0 0 0 0 0 + SGN-E578308 726 0 85 C11HBa0139J14.2 118142 19217 19302 1 85, 0, 19217, 37 0 0 0 0 0 1 144 + SGN-E578368 725 0 37 C11HBa0139J14.2 118142 48626 48807 2 24,13, 0,24, 48626,48794, 503 1 0 0 0 0 3 1324 + SGN-E319177 504 0 504 C11HBa0139J14.2 118142 19591 21419 4 37,96,227,144, 0,37,133,360, 19591,19738,20946,21275, 679 0 0 0 0 0 3 2409 - SGN-E320509 684 0 679 C11HBa0139J14.2 118142 22599 25687 4 154,224,133,168, 5,159,383,516, 22599,23807,24915,25519, 395 0 0 0 0 0 3 1324 + SGN-E309828 395 0 395 C11HBa0139J14.2 118142 19581 21300 4 47,96,227,25, 0,47,143,370, 19581,19738,20946,21275, 420 1 0 0 1 2 4 1325 + SGN-E310595 423 0 423 C11HBa0139J14.2 118142 19582 21328 5 7,38,96,227,53, 0,9,47,143,370, 19582,19590,19738,20946,21275, 657 0 0 0 0 0 3 3943 + SGN-E309095 668 0 657 C11HBa0139J14.2 118142 82219 86819 4 85,100,188,284, 0,85,185,373, 82219,85388,85587,86535, 575 1 0 0 0 0 2 859 + SGN-E309096 586 0 576 C11HBa0139J14.2 118142 85384 86819 3 104,188,284, 0,104,292, 85384,85587,86535, 559 0 0 0 0 0 3 1324 + SGN-E372405 577 0 559 C11HBa0139J14.2 118142 19581 21464 4 47,96,227,189, 0,47,143,370, 19581,19738,20946,21275, 374 5 0 0 0 0 3 1324 + SGN-E372406 379 0 379 C11HBa0139J14.2 118142 19582 21285 4 46,96,227,10, 0,46,142,369, 19582,19738,20946,21275, 650 0 0 0 0 0 3 3943 + SGN-E374272 665 0 650 C11HBa0139J14.2 118142 82226 86819 4 78,100,188,284, 0,78,178,366, 82226,85388,85587,86535, 723 1 0 0 0 0 1 255 - SGN-E390123 734 0 724 C11HBa0139J14.2 118142 21686 22665 2 658,66, 10,668, 21686,22599, 707 0 0 0 0 0 4 1607 - SGN-E390124 707 0 707 C11HBa0139J14.2 118142 23886 26200 5 145,133,218,177,34, 0,145,278,496,673, 23886,24915,25519,25875,26166, 137 5 0 0 0 0 0 0 + SGN-E392668 628 383 525 C11HBa0139J14.2 118142 72291 72433 1 142, 383, 72291, 584 6 0 0 0 0 1 415 - SGN-E395748 616 0 590 C11HBa0139J14.2 118142 100558 101563 2 520,70, 26,546, 100558,101493, 674 1 0 0 0 0 2 4720 - SGN-E395749 675 0 675 C11HBa0139J14.2 118142 100845 106240 3 233,308,134, 0,233,541, 100845,101493,106106, 618 1 0 0 0 0 1 415 - SGN-E537428 656 0 619 C11HBa0139J14.2 118142 100549 101583 2 529,90, 37,566, 100549,101493, 688 5 0 0 0 0 1 1 - SGN-E537431 693 0 693 C11HBa0139J14.2 118142 102342 103036 2 214,479, 0,214, 102342,102557, 156 9 0 0 1 4 2 2 - SGN-E539292 674 413 582 C11HBa0139J14.2 118142 7791 7958 4 16,6,60,83, 92,108,114,178, 7791,7808,7815,7875, 680 0 0 0 0 0 0 0 - SGN-E539339 690 0 680 C11HBa0139J14.2 118142 36468 37148 1 680, 10, 36468, 678 1 0 1 0 0 0 0 - SGN-E539342 689 0 680 C11HBa0139J14.2 118142 36468 37148 1 680, 9, 36468, 610 0 0 0 0 0 0 0 - SGN-E539346 610 0 610 C11HBa0139J14.2 118142 36473 37083 1 610, 0, 36473, 478 1 0 0 0 0 0 0 - SGN-E539349 497 18 497 C11HBa0139J14.2 118142 36669 37148 1 479, 0, 36669, 52 4 0 0 0 0 0 0 - SGN-E546812 491 77 133 C11HBa0139J14.2 118142 67146 67202 1 56, 358, 67146, 52 4 0 0 0 0 0 0 - SGN-E546813 462 77 133 C11HBa0139J14.2 118142 67146 67202 1 56, 329, 67146, 51 0 0 0 0 0 3 16582 + SGN-E548262 637 375 426 C11HBa0139J14.2 118142 99137 115770 4 20,8,15,8, 375,395,403,418, 99137,115719,115741,115762, 586 1 0 0 0 0 0 0 - SGN-E550748 587 0 587 C11HBa0139J14.2 118142 21687 22274 1 587, 0, 21687, 383 0 0 0 0 0 2 1938 - SGN-E227073 383 0 383 C11HBa0139J14.2 118142 22689 25010 3 64,224,95, 0,64,288, 22689,23807,24915, 510 1 0 0 0 0 0 0 - SGN-E227074 521 0 511 C11HBa0139J14.2 118142 21679 22190 1 511, 10, 21679, 682 0 0 2 0 0 3 1022 + SGN-E729290 684 0 684 C11HBa0139J14.2 118142 54748 56454 4 398,136,68,82, 0,398,534,602, 54748,55749,56218,56372, 42 0 0 1 0 0 1 464 - SGN-E719422 766 649 692 C11HBa0139J14.2 118142 48140 48647 2 24,19, 74,98, 48140,48628, 553 1 0 0 0 0 3 1324 + SGN-E717749 623 14 568 C11HBa0139J14.2 118142 19557 21435 4 71,96,227,160, 14,85,181,408, 19557,19738,20946,21275, 594 0 0 0 0 0 3 1324 + SGN-E720452 668 30 624 C11HBa0139J14.2 118142 19558 21476 4 70,96,227,201, 30,100,196,423, 19558,19738,20946,21275, 575 2 0 0 0 0 3 1324 + SGN-E723618 582 5 582 C11HBa0139J14.2 118142 19557 21458 4 71,96,227,183, 5,76,172,399, 19557,19738,20946,21275, 561 0 0 0 0 0 3 1324 + SGN-E732082 577 5 566 C11HBa0139J14.2 118142 19587 21472 4 41,96,227,197, 5,46,142,369, 19587,19738,20946,21275, 574 1 0 0 0 0 3 1324 + SGN-E732429 587 0 575 C11HBa0139J14.2 118142 19583 21482 4 45,96,227,207, 0,45,141,368, 19583,19738,20946,21275, 570 1 0 0 0 0 3 1324 + SGN-E732917 580 0 571 C11HBa0139J14.2 118142 19581 21476 4 47,96,227,201, 0,47,143,370, 19581,19738,20946,21275, 561 2 0 0 0 0 3 1324 + SGN-E732926 575 0 563 C11HBa0139J14.2 118142 19577 21464 4 51,96,227,189, 0,51,147,374, 19577,19738,20946,21275, 560 0 0 0 0 0 3 1324 + SGN-E733397 577 4 564 C11HBa0139J14.2 118142 19592 21476 4 36,96,227,201, 4,40,136,363, 19592,19738,20946,21275, 568 1 0 0 0 0 3 1324 + SGN-E735225 578 0 569 C11HBa0139J14.2 118142 19583 21476 4 45,96,227,201, 0,45,141,368, 19583,19738,20946,21275, 879 1 0 0 0 0 2 3852 - SGN-E701023 880 0 880 C11HBa0139J14.2 118142 37644 42376 3 247,32,601, 0,247,279, 37644,41742,41775, 833 1 0 1 0 0 4 2445 + SGN-E706163 835 0 835 C11HBa0139J14.2 118142 54755 58035 5 391,136,68,87,153, 0,391,527,595,682, 54755,55749,56218,56372,57882, 822 1 0 0 0 0 4 2445 + SGN-E709782 825 2 825 C11HBa0139J14.2 118142 54775 58043 5 371,136,68,87,161, 2,373,509,577,664, 54775,55749,56218,56372,57882, 60 4 0 0 0 0 1 36 + SGN-E711836 645 233 297 C11HBa0139J14.2 118142 21008 21108 2 52,12, 233,285, 21008,21096, 528 1 0 0 0 0 3 1324 + SGN-E711928 562 0 529 C11HBa0139J14.2 118142 19582 21435 4 46,96,227,160, 0,46,142,369, 19582,19738,20946,21275, 50 2 0 0 1 165 1 32701 + SGN-E712606 695 456 673 C11HBa0139J14.2 118142 79538 112291 2 23,29, 456,644, 79538,112262, 531 0 0 0 0 0 3 1324 + SGN-E712689 539 0 531 C11HBa0139J14.2 118142 19580 21435 4 48,96,227,160, 0,48,144,371, 19580,19738,20946,21275, 568 0 0 0 0 0 3 1324 + SGN-E712717 635 0 568 C11HBa0139J14.2 118142 19583 21475 4 45,96,227,200, 0,45,141,368, 19583,19738,20946,21275, 646 12 0 0 2 4 3 1327 + SGN-E713179 681 11 673 C11HBa0139J14.2 118142 19591 21576 5 34,77,19,227,301, 11,48,126,145,372, 19591,19738,19815,20946,21275, 465 1 0 0 0 0 2 1214 + SGN-E713208 476 0 466 C11HBa0139J14.2 118142 19796 21476 3 38,227,201, 0,38,265, 19796,20946,21275, 656 0 0 0 0 0 3 3943 + SGN-E713398 656 0 656 C11HBa0139J14.2 118142 82219 86818 4 85,100,188,283, 0,85,185,373, 82219,85388,85587,86535, 578 1 0 0 0 0 3 1324 + SGN-E713745 579 0 579 C11HBa0139J14.2 118142 19571 21474 4 57,96,227,199, 0,57,153,380, 19571,19738,20946,21275, 581 0 0 0 0 0 3 1324 + SGN-E713770 656 0 581 C11HBa0139J14.2 118142 19571 21476 4 57,96,227,201, 0,57,153,380, 19571,19738,20946,21275, 566 0 0 0 0 0 3 1324 + SGN-E713867 583 5 571 C11HBa0139J14.2 118142 19586 21476 4 42,96,227,201, 5,47,143,370, 19586,19738,20946,21275, 571 0 0 0 0 0 3 1324 + SGN-E714820 580 0 571 C11HBa0139J14.2 118142 19581 21476 4 47,96,227,201, 0,47,143,370, 19581,19738,20946,21275, 571 0 0 0 0 0 3 1324 + SGN-E714866 580 0 571 C11HBa0139J14.2 118142 19581 21476 4 47,96,227,201, 0,47,143,370, 19581,19738,20946,21275, 511 0 0 0 0 0 0 0 - SGN-E716024 519 0 511 C11HBa0139J14.2 118142 58478 58989 1 511, 8, 58478, 40 0 0 0 1 11 1 463 - SGN-E717355 556 450 501 C11HBa0139J14.2 118142 48144 48647 2 19,21, 55,85, 48144,48626, 87 0 0 0 0 0 0 0 - SGN-E253073 516 1 88 C11HBa0139J14.2 118142 21389 21476 1 87, 428, 21389, 549 0 0 0 0 0 1 1 - SGN-E265138 549 0 549 C11HBa0139J14.2 118142 102485 103035 2 71,478, 0,71, 102485,102557, 40 0 0 0 0 0 1 463 + SGN-E267598 333 10 50 C11HBa0139J14.2 118142 48144 48647 2 19,21, 10,29, 48144,48626, 43 1 0 0 1 2 0 0 + SGN-E218450 239 143 189 C11HBa0139J14.2 118142 109226 109270 2 15,29, 143,160, 109226,109241, 37 1 0 0 0 0 1 182 - SGN-E236685 308 139 177 C11HBa0139J14.2 118142 98939 99159 2 12,26, 131,143, 98939,99133, 48 1 0 0 1 9 4 15 - SGN-E234305 265 36 94 C11HBa0139J14.2 118142 115297 115361 5 5,8,5,12,19, 171,176,193,198,210, 115297,115305,115317,115323,115342, 334 0 0 0 0 0 1 102 + SGN-E238765 360 8 342 C11HBa0139J14.2 118142 21040 21476 2 133,201, 8,141, 21040,21275, 481 3 0 0 0 0 5 1326 + SGN-E278594 490 6 490 C11HBa0139J14.2 118142 19591 21401 6 37,96,227,94,8,22, 6,43,139,366,460,468, 19591,19738,20946,21275,21370,21379, 82 6 0 0 0 0 0 0 - SGN-E284025 513 413 501 C11HBa0139J14.2 118142 7870 7958 1 88, 12, 7870, 507 0 0 0 0 0 0 0 - SGN-E281779 507 0 507 C11HBa0139J14.2 118142 36640 37147 1 507, 0, 36640, 502 0 0 0 0 0 3 1541 - SGN-E283128 502 0 502 C11HBa0139J14.2 118142 27409 29452 4 129,89,86,198, 0,129,218,304, 27409,27640,27795,29254, 47 0 0 0 0 0 2 16576 + SGN-E283625 480 374 421 C11HBa0139J14.2 118142 99137 115760 3 20,8,19, 374,394,402, 99137,115719,115741, 408 0 0 0 0 0 0 0 + SGN-E284785 418 10 418 C11HBa0139J14.2 118142 100590 100998 1 408, 10, 100590, 510 6 0 0 0 0 3 1324 + SGN-E288504 516 0 516 C11HBa0139J14.2 118142 19589 21429 4 39,96,227,154, 0,39,135,362, 19589,19738,20946,21275, 370 0 0 0 0 0 2 1222 + SGN-E292794 374 0 370 C11HBa0139J14.2 118142 19582 21174 3 46,96,228, 0,46,142, 19582,19738,20946, 291 0 0 0 0 0 2 1222 + SGN-E294357 291 0 291 C11HBa0139J14.2 118142 19582 21095 3 46,96,149, 0,46,142, 19582,19738,20946, 291 0 0 0 0 0 2 1222 - SGN-E294358 291 0 291 C11HBa0139J14.2 118142 19582 21095 3 46,96,149, 0,46,142, 19582,19738,20946, 563 6 0 0 0 0 3 1324 + SGN-E296178 591 0 569 C11HBa0139J14.2 118142 19579 21472 4 49,96,227,197, 0,49,145,372, 19579,19738,20946,21275, 172 0 0 0 0 0 1 1112 + SGN-E295802 172 0 172 C11HBa0139J14.2 118142 19778 21062 2 56,116, 0,56, 19778,20946, 479 3 0 0 0 0 3 1324 + SGN-E297476 482 0 482 C11HBa0139J14.2 118142 19582 21388 4 46,96,227,113, 0,46,142,369, 19582,19738,20946,21275, 490 1 0 0 0 0 3 3943 + SGN-E300550 492 1 492 C11HBa0139J14.2 118142 82225 86659 4 79,100,188,124, 1,80,180,368, 82225,85388,85587,86535, 495 3 0 1 2 10 9 1237 + SGN-E304814 515 6 515 C11HBa0139J14.2 118142 19738 21474 10 14,17,5,20,10,10,43,4,177,199, 6,20,37,42,62,80,92,135,139,316, 19738,19754,19772,19778,19799,19821,20947,20991,20996,21275, 571 0 0 0 0 0 3 1324 + SGN-E306304 605 0 571 C11HBa0139J14.2 118142 19581 21476 4 47,96,227,201, 0,47,143,370, 19581,19738,20946,21275, 567 0 0 0 0 0 3 1324 + SGN-E303555 577 0 567 C11HBa0139J14.2 118142 19581 21472 4 47,96,227,197, 0,47,143,370, 19581,19738,20946,21275, 625 0 0 0 0 0 4 940 - SGN-E303743 625 0 625 C11HBa0139J14.2 118142 25553 27118 5 184,177,108,76,80, 0,184,361,469,545, 25553,25875,26166,26464,27038, 506 0 0 0 0 0 3 3943 + SGN-E304238 506 0 506 C11HBa0139J14.2 118142 82219 86668 4 85,100,188,133, 0,85,185,373, 82219,85388,85587,86535, 469 1 0 0 0 0 3 1324 + SGN-E309245 470 0 470 C11HBa0139J14.2 118142 19582 21376 4 46,96,227,101, 0,46,142,369, 19582,19738,20946,21275, 596 8 0 0 0 0 3 1541 - SGN-E331412 604 0 604 C11HBa0139J14.2 118142 27337 29482 4 201,89,86,228, 0,201,290,376, 27337,27640,27795,29254, 202 0 0 0 0 0 1 215 + SGN-E313984 202 0 202 C11HBa0139J14.2 118142 65077 65494 2 65,137, 0,65, 65077,65357, 380 0 0 0 0 0 3 802 - SGN-E310274 380 0 380 C11HBa0139J14.2 118142 25891 27073 4 161,108,76,35, 0,161,269,345, 25891,26166,26464,27038, 729 1 0 0 0 0 5 1556 + SGN-E315346 730 0 730 C11HBa0139J14.2 118142 63139 65425 6 277,29,195,85,76,68, 0,277,306,501,586,662, 63139,64396,64533,64821,65066,65357, 523 0 0 0 1 1 3 1324 + SGN-E336384 533 0 524 C11HBa0139J14.2 118142 19588 21435 5 40,96,227,154,6, 0,40,136,363,518, 19588,19738,20946,21275,21429, 278 3 0 0 0 0 2 1222 + SGN-E336385 281 0 281 C11HBa0139J14.2 118142 19588 21091 3 40,96,145, 0,40,136, 19588,19738,20946, 439 0 0 0 0 0 1 1389 - SGN-E339634 439 0 439 C11HBa0139J14.2 118142 101532 103360 2 269,170, 0,269, 101532,103190, 43 1 0 0 1 2 0 0 + SGN-E335034 789 700 746 C11HBa0139J14.2 118142 109226 109270 2 15,29, 700,717, 109226,109241, 560 0 0 0 0 0 3 1324 + SGN-E345530 560 0 560 C11HBa0139J14.2 118142 19581 21465 4 47,96,227,190, 0,47,143,370, 19581,19738,20946,21275, 219 0 0 0 0 0 1 102 + SGN-E340536 247 0 219 C11HBa0139J14.2 118142 21155 21476 2 18,201, 0,18, 21155,21275, 631 0 0 0 0 0 3 3943 + SGN-E340677 631 0 631 C11HBa0139J14.2 118142 82243 86817 4 61,100,188,282, 0,61,161,349, 82243,85388,85587,86535, 355 0 0 0 0 0 2 3183 + SGN-E345899 361 0 355 C11HBa0139J14.2 118142 82237 85775 3 67,100,188, 0,67,167, 82237,85388,85587, 568 0 0 0 0 0 3 1324 + SGN-E348367 568 0 568 C11HBa0139J14.2 118142 19584 21476 4 44,96,227,201, 0,44,140,367, 19584,19738,20946,21275, 519 4 0 0 6 7 2 1214 + SGN-E348734 561 21 551 C11HBa0139J14.2 118142 19738 21475 9 13,22,17,21,23,22,132,73,200, 21,35,58,77,99,122,145,278,351, 19738,19751,19773,19790,19811,20946,20968,21100,21275, 626 1 0 2 0 0 0 0 - SGN-E347473 629 0 629 C11HBa0139J14.2 118142 58476 59105 1 629, 0, 58476, 351 19 0 0 1 1 3 1205 + SGN-E342495 384 0 371 C11HBa0139J14.2 118142 19593 21168 5 35,114,213,4,4, 0,35,149,363,367, 19593,19720,20946,21159,21164, 46 0 0 0 1 61 1 50487 + SGN-E351967 341 22 129 C11HBa0139J14.2 118142 48626 99159 2 21,25, 22,104, 48626,99134, 304 0 0 0 0 0 0 0 - SGN-E353286 304 0 304 C11HBa0139J14.2 118142 36491 36795 1 304, 0, 36491, 302 0 0 1 0 0 0 0 - SGN-E349944 357 0 303 C11HBa0139J14.2 118142 36492 36795 1 303, 54, 36492, 302 0 0 1 0 0 0 0 - SGN-E350779 357 0 303 C11HBa0139J14.2 118142 36492 36795 1 303, 54, 36492, 411 0 0 0 0 0 0 0 - SGN-E352558 424 0 411 C11HBa0139J14.2 118142 58547 58958 1 411, 13, 58547, 402 6 0 0 0 0 1 4305 - SGN-E364148 408 0 408 C11HBa0139J14.2 118142 101520 106233 2 281,127, 0,281, 101520,106106, 52 4 0 0 0 0 0 0 - SGN-E362608 452 76 132 C11HBa0139J14.2 118142 67146 67202 1 56, 320, 67146, 381 5 0 0 11 14 2 104 + SGN-E362771 448 39 439 C11HBa0139J14.2 118142 20945 21435 13 46,17,5,5,7,19,7,12,14,5,21,68,160, 39,86,104,110,116,127,147,155,168,183,189,211,279, 20945,20991,21008,21013,21018,21027,21046,21053,21065,21079,21084,21105,21275, 429 5 0 0 0 0 5 1399 + SGN-E359648 434 0 434 C11HBa0139J14.2 118142 19556 21389 6 28,41,96,227,36,6, 0,28,69,165,392,428, 19556,19587,19738,20946,21275,21383,