psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 1877 2 0 0 1 1 5 651 - SGN-E747665 1888 0 1880 C11HBa0190J03.1 122911 81640 84170 7 114,131,67,23,507,158,879, 8,122,253,320,343,850,1009, 81640,81755,81967,82601,82625,83133,83291, 68 1 0 0 0 0 0 0 + SGN-E745248 1449 507 576 C11HBa0190J03.1 122911 64522 64591 1 69, 507, 64522, 241 13 0 0 3 53 3 37 - SGN-E745144 1898 1587 1894 C11HBa0190J03.1 122911 11295 11586 4 13,11,149,81, 4,28,78,230, 11295,11320,11354,11505, 757 2 0 0 0 0 0 0 + SGN-E553411 759 0 759 C11HBa0190J03.1 122911 92647 93406 1 759, 0, 92647, 712 24 0 0 1 1 1 3337 + SGN-E553411 759 22 759 C11HBa0190J03.1 122911 75625 79698 3 29,108,599, 22,52,160, 75625,75654,79099, 651 50 0 0 0 0 3 17025 + SGN-E553411 759 57 758 C11HBa0190J03.1 122911 79000 96726 4 82,327,287,5, 57,139,466,753, 79000,90887,96432,96721, 819 6 0 0 1 1 0 0 - SGN-E553415 826 0 826 C11HBa0190J03.1 122911 93564 94389 2 6,819, 0,7, 93564,93570, 753 44 0 0 3 29 1 30 - SGN-E553415 826 0 826 C11HBa0190J03.1 122911 79856 80683 4 6,446,176,169, 0,7,454,657, 79856,79862,80308,80514, 219 0 0 0 0 0 0 0 - SGN-E555037 362 0 219 C11HBa0190J03.1 122911 92623 92842 1 219, 143, 92623, 119 8 0 0 1 11 1 7 - SGN-E555037 362 0 138 C11HBa0190J03.1 122911 79000 79134 2 92,35, 224,327, 79000,79099, 77 6 0 0 0 0 1 100 + SGN-E688740 468 344 427 C11HBa0190J03.1 122911 110995 111178 2 6,77, 344,350, 110995,111101, 336 1 0 0 0 0 0 0 - SGN-E552498 454 0 337 C11HBa0190J03.1 122911 92623 92960 1 337, 117, 92623, 238 18 0 0 0 0 1 11805 - SGN-E552498 454 0 256 C11HBa0190J03.1 122911 79000 91061 2 82,174, 198,280, 79000,90887, 145 8 0 0 0 0 0 0 - SGN-E552498 454 0 153 C11HBa0190J03.1 122911 79099 79252 1 153, 301, 79099, 337 1 0 0 0 0 0 0 - SGN-E553330 347 0 338 C11HBa0190J03.1 122911 92623 92961 1 338, 9, 92623, 146 8 0 0 0 0 0 0 - SGN-E553330 347 0 154 C11HBa0190J03.1 122911 79099 79253 1 154, 193, 79099, 608 0 0 0 0 0 0 0 - SGN-E553069 708 0 608 C11HBa0190J03.1 122911 95849 96457 1 608, 100, 95849, 354 0 0 0 0 0 2 1769 + SGN-E204749 354 0 354 C11HBa0190J03.1 122911 111771 113894 3 180,48,126, 0,180,228, 111771,113622,113768, 322 17 0 0 1 17 3 3230 + SGN-E205558 571 209 565 C11HBa0190J03.1 122911 9911 13480 4 107,19,176,37, 209,316,352,528, 9911,13099,13153,13443, 199 11 0 0 0 0 2 13 + SGN-E205558 571 0 210 C11HBa0190J03.1 122911 48123 48346 3 9,15,186, 0,9,24, 48123,48144,48160, 714 0 0 0 0 0 2 2 - SGN-E213039 714 0 714 C11HBa0190J03.1 122911 80153 80869 3 30,40,644, 0,30,70, 80153,80184,80225, 655 23 0 0 2 36 4 36 - SGN-E213039 714 0 714 C11HBa0190J03.1 122911 93861 94575 5 30,40,77,176,355, 0,30,76,153,359, 93861,93892,93939,94017,94220, 41 1 0 0 0 0 0 0 - SGN-E212584 704 45 87 C11HBa0190J03.1 122911 69862 69904 1 42, 617, 69862, 39 1 0 0 1 1 1 9 - SGN-E379738 553 377 418 C11HBa0190J03.1 122911 81761 81810 2 14,26, 135,150, 81761,81784, 892 1 0 1 1 1 1 305 + SGN-E378256 895 0 895 C11HBa0190J03.1 122911 121204 122403 3 565,247,82, 0,566,813, 121204,121769,122321, 210 6 0 0 0 0 0 0 - SGN-E373512 216 0 216 C11HBa0190J03.1 122911 121204 121420 1 216, 0, 121204, 178 7 0 0 2 35 9 84 + SGN-E375139 528 0 220 C11HBa0190J03.1 122911 10822 11091 11 38,23,12,13,15,5,16,4,18,12,29, 0,47,70,82,95,110,141,157,161,179,191, 10822,10879,10903,10917,10958,10974,10979,10996,11015,11048,11062, 498 0 0 0 0 0 2 407 + SGN-E375074 508 0 498 C11HBa0190J03.1 122911 116701 117606 3 20,83,395, 0,20,103, 116701,116812,117211, 668 4 0 0 3 4 2 407 + SGN-E375075 688 0 676 C11HBa0190J03.1 122911 116527 117606 6 194,83,326,29,36,4, 0,194,277,604,635,672, 116527,116812,117211,117537,117566,117602, 32 1 0 0 0 0 0 0 + SGN-E376168 709 603 636 C11HBa0190J03.1 122911 68893 68926 1 33, 603, 68893, 36 0 0 0 0 0 1 425 + SGN-E376341 424 179 215 C11HBa0190J03.1 122911 65353 65814 2 21,15, 179,200, 65353,65799, 673 0 0 0 0 0 2 407 + SGN-E376677 683 0 673 C11HBa0190J03.1 122911 116526 117606 3 195,83,395, 0,195,278, 116526,116812,117211, 671 0 0 0 0 0 3 408 + SGN-E376678 677 0 671 C11HBa0190J03.1 122911 116527 117606 4 194,83,381,13, 0,194,277,658, 116527,116812,117211,117593, 700 0 0 0 1 1 1 305 + SGN-E377476 713 0 701 C11HBa0190J03.1 122911 121685 122690 3 84,247,369, 0,85,332, 121685,121769,122321, 677 0 0 0 1 1 0 0 + SGN-E377477 678 0 678 C11HBa0190J03.1 122911 121204 121881 2 565,112, 0,566, 121204,121769, 678 0 0 0 1 1 1 305 + SGN-E377773 691 0 679 C11HBa0190J03.1 122911 121707 122690 3 62,247,369, 0,63,310, 121707,121769,122321, 680 0 0 0 1 1 1 1 + SGN-E377774 681 0 681 C11HBa0190J03.1 122911 121204 121885 3 565,77,38, 0,566,643, 121204,121769,121847, 709 0 0 0 1 1 1 305 + SGN-E377848 722 0 710 C11HBa0190J03.1 122911 121676 122690 3 93,247,369, 0,94,341, 121676,121769,122321, 695 0 0 0 1 1 0 0 + SGN-E377849 696 0 696 C11HBa0190J03.1 122911 121204 121899 2 565,130, 0,566, 121204,121769, 668 19 0 0 3 28 6 349 - SGN-E378105 747 0 715 C11HBa0190J03.1 122911 81617 82653 7 79,16,57,134,72,118,211, 32,118,144,201,346,418,536, 81617,81701,81718,81783,81924,82323,82442, 632 17 0 0 3 28 6 349 - SGN-E389826 678 1 678 C11HBa0190J03.1 122911 81655 82653 7 41,16,57,134,72,118,211, 0,48,74,131,276,348,466, 81655,81701,81718,81783,81924,82323,82442, 620 15 0 0 4 41 8 365 - SGN-E390019 676 0 676 C11HBa0190J03.1 122911 81641 82641 9 11,7,21,16,57,134,72,118,199, 0,22,29,59,85,142,287,359,477, 81641,81665,81673,81701,81718,81783,81924,82323,82442, 390 11 0 0 0 0 2 328 - SGN-E390802 418 1 402 C11HBa0190J03.1 122911 81924 82653 3 72,118,211, 16,88,206, 81924,82323,82442, 445 0 0 0 0 0 1 3091 + SGN-E538848 452 0 445 C11HBa0190J03.1 122911 48268 51804 2 98,347, 0,98, 48268,51457, 105 3 0 0 0 0 1 4 + SGN-E543578 762 649 757 C11HBa0190J03.1 122911 81277 81389 2 97,11, 649,746, 81277,81378, 314 13 0 0 3 47 3 6 + SGN-E546611 417 0 374 C11HBa0190J03.1 122911 122377 122710 6 66,88,29,57,80,7, 0,85,187,230,287,367, 122377,122443,122531,122564,122622,122703, 590 13 0 0 2 113 4 135 + SGN-E546612 716 0 716 C11HBa0190J03.1 122911 118677 119415 6 392,19,10,80,81,21, 0,392,411,421,502,695, 118677,119070,119102,119114,119194,119394, 613 17 0 0 3 47 4 578 + SGN-E546692 691 0 677 C11HBa0190J03.1 122911 121502 122710 7 177,69,122,88,29,57,88, 0,177,246,387,489,532,589, 121502,121947,122321,122443,122531,122564,122622, 445 0 0 0 0 0 1 3091 + SGN-E548124 452 0 445 C11HBa0190J03.1 122911 48268 51804 2 98,347, 0,98, 48268,51457, 126 3 0 0 0 0 1 3 + SGN-E548970 789 554 683 C11HBa0190J03.1 122911 81277 81409 2 103,26, 554,657, 81277,81383, 469 8 0 0 0 0 3 16 + SGN-E549413 484 0 477 C11HBa0190J03.1 122911 118677 119170 4 392,19,10,56, 0,392,411,421, 118677,119070,119102,119114, 652 22 0 0 3 28 6 349 - SGN-E550196 728 13 715 C11HBa0190J03.1 122911 81618 82641 7 78,16,57,134,72,118,199, 13,98,124,181,326,398,516, 81618,81701,81718,81783,81924,82323,82442, 77 6 0 0 0 0 1 100 + SGN-E550981 468 344 427 C11HBa0190J03.1 122911 110995 111178 2 6,77, 344,350, 110995,111101, 439 5 0 0 0 0 0 0 + SGN-E231306 444 0 444 C11HBa0190J03.1 122911 121204 121648 1 444, 0, 121204, 698 0 0 0 1 1 0 0 + SGN-E235419 699 0 699 C11HBa0190J03.1 122911 121204 121902 2 565,133, 0,566, 121204,121769, 422 12 0 0 1 11 3 334 - SGN-E236523 445 0 445 C11HBa0190J03.1 122911 81885 82653 4 32,72,119,211, 0,43,115,234, 81885,81924,82322,82442, 562 1 0 1 0 0 2 407 + SGN-E238270 564 0 564 C11HBa0190J03.1 122911 116527 117498 3 194,83,287, 0,194,277, 116527,116812,117211, 510 1 0 0 0 0 0 0 + SGN-E240120 512 1 512 C11HBa0190J03.1 122911 121213 121724 1 511, 1, 121213, 293 0 0 0 0 0 2 407 + SGN-E243873 293 0 293 C11HBa0190J03.1 122911 116527 117227 3 194,83,16, 0,194,277, 116527,116812,117211, 534 0 0 0 0 0 2 407 + SGN-E231762 534 0 534 C11HBa0190J03.1 122911 116527 117468 3 194,83,257, 0,194,277, 116527,116812,117211, 419 0 0 0 0 0 0 0 + SGN-E232951 419 0 419 C11HBa0190J03.1 122911 121204 121623 1 419, 0, 121204, 511 0 0 0 0 0 0 0 + SGN-E233505 511 0 511 C11HBa0190J03.1 122911 121204 121715 1 511, 0, 121204, 35 0 0 0 0 0 1 425 + SGN-E720756 609 471 506 C11HBa0190J03.1 122911 65354 65814 2 20,15, 471,491, 65354,65799, 40 0 0 0 0 0 2 435 + SGN-E721226 688 648 688 C11HBa0190J03.1 122911 65352 65827 3 18,17,5, 648,666,683, 65352,65796,65822, 864 1 0 0 0 0 3 3190 + SGN-E721852 866 1 866 C11HBa0190J03.1 122911 118639 122694 4 344,79,69,373, 1,345,424,493, 118639,120219,121947,122321, 39 2 0 0 0 0 0 0 - SGN-E736872 868 807 848 C11HBa0190J03.1 122911 70208 70249 1 41, 20, 70208, 780 66 0 0 1 15 3 15 - SGN-E738711 861 0 861 C11HBa0190J03.1 122911 84680 85541 4 208,4,287,347, 0,208,212,514, 84680,84889,84895,85194, 34 0 0 0 0 0 0 0 + SGN-E739248 881 188 222 C11HBa0190J03.1 122911 84045 84079 1 34, 188, 84045, 34 0 0 0 0 0 0 0 + SGN-E740547 862 188 222 C11HBa0190J03.1 122911 84045 84079 1 34, 188, 84045, 806 2 0 0 0 0 0 0 - SGN-E700805 808 0 808 C11HBa0190J03.1 122911 92934 93742 1 808, 0, 92934, 775 33 0 0 0 0 1 3337 - SGN-E700805 808 0 808 C11HBa0190J03.1 122911 75889 80034 2 17,791, 0,17, 75889,79243, 166 6 0 0 0 0 0 0 - SGN-E700805 808 626 798 C11HBa0190J03.1 122911 91045 91217 1 172, 10, 91045, 713 34 0 0 0 0 6 3512 + SGN-E704980 831 84 831 C11HBa0190J03.1 122911 9909 14168 7 109,58,41,62,252,82,143, 84,193,251,292,354,606,688, 9909,13099,13160,13267,13443,13796,14025, 550 0 0 0 0 0 0 0 + SGN-E246224 570 20 570 C11HBa0190J03.1 122911 75602 76152 1 550, 20, 75602, 379 0 0 0 0 0 2 3195 + SGN-E245332 496 117 496 C11HBa0190J03.1 122911 9911 13485 3 107,230,42, 117,224,454, 9911,13099,13443, 105 6 0 0 0 0 2 49 + SGN-E245332 496 0 111 C11HBa0190J03.1 122911 48179 48339 3 28,9,74, 0,28,37, 48179,48241,48265, 247 11 0 0 3 46 10 85 + SGN-E252033 573 126 430 C11HBa0190J03.1 122911 10748 11091 12 9,102,23,12,13,15,5,16,4,18,13,28, 126,146,257,280,292,305,320,351,367,371,389,402, 10748,10758,10879,10903,10944,10958,10974,10979,10996,11015,11048,11063, 33 2 0 0 0 0 0 0 + SGN-E252033 573 484 519 C11HBa0190J03.1 122911 11053 11088 1 35, 484, 11053, 230 10 0 0 4 64 9 103 + SGN-E254294 458 128 432 C11HBa0190J03.1 122911 10748 11091 11 9,102,23,12,13,15,6,15,4,14,27, 128,148,259,282,294,307,322,354,369,391,405, 10748,10758,10879,10903,10917,10958,10974,10980,10996,11048,11064, 564 0 0 0 0 0 2 2419 + SGN-E256164 564 0 564 C11HBa0190J03.1 122911 118653 121636 3 330,79,155, 0,330,409, 118653,120219,121481, 56 3 0 0 0 0 0 0 + SGN-E256764 453 361 420 C11HBa0190J03.1 122911 111118 111177 1 59, 361, 111118, 270 16 0 1 3 9 0 0 - SGN-E260733 631 318 614 C11HBa0190J03.1 122911 11299 11586 4 79,133,19,56, 17,97,231,257, 11299,11378,11511,11530, 597 26 0 0 2 6 3 368 + SGN-E262017 629 0 629 C11HBa0190J03.1 122911 13177 14168 4 152,248,81,142, 0,152,401,487, 13177,13443,13793,14026, 335 1 0 0 0 0 0 0 - SGN-E261121 435 99 435 C11HBa0190J03.1 122911 82907 83243 1 336, 0, 82907, 61 3 0 0 1 1 1 267 - SGN-E217989 317 231 296 C11HBa0190J03.1 122911 100940 101271 3 17,38,9, 21,39,77, 100940,100957,101262, 61 3 0 0 1 1 1 267 - SGN-E218065 317 231 296 C11HBa0190J03.1 122911 100940 101271 3 17,38,9, 21,39,77, 100940,100957,101262, 35 0 0 0 0 0 1 426 + SGN-E230902 235 198 233 C11HBa0190J03.1 122911 65352 65813 2 17,18, 198,215, 65352,65795, 444 0 0 0 0 0 1 3091 + SGN-E278923 451 0 444 C11HBa0190J03.1 122911 48269 51804 2 97,347, 0,97, 48269,51457, 40 2 0 0 0 0 0 0 - SGN-E286017 578 454 496 C11HBa0190J03.1 122911 97017 97059 1 42, 82, 97017, 430 0 0 0 1 1 2 3195 + SGN-E300041 566 135 566 C11HBa0190J03.1 122911 9908 13533 4 33,77,230,90, 135,169,246,476, 9908,9941,13099,13443, 81 7 0 0 0 0 0 0 - SGN-E300084 541 135 223 C11HBa0190J03.1 122911 82774 82862 1 88, 318, 82774, 81 7 0 0 0 0 0 0 - SGN-E300083 510 135 223 C11HBa0190J03.1 122911 82774 82862 1 88, 287, 82774, 41 2 0 0 0 0 0 0 - SGN-E301429 504 264 307 C11HBa0190J03.1 122911 69862 69905 1 43, 197, 69862, 262 8 0 0 2 17 3 14 - SGN-E309355 374 71 358 C11HBa0190J03.1 122911 81602 81886 4 94,16,57,103, 16,117,143,200, 81602,81701,81718,81783, 392 19 0 0 0 0 3 3198 + SGN-E332891 443 32 443 C11HBa0190J03.1 122911 9909 13518 4 109,58,169,75, 32,141,199,368, 9909,13099,13160,13443, 493 23 0 0 0 0 4 3199 + SGN-E333134 548 32 548 C11HBa0190J03.1 122911 9909 13624 5 109,58,169,91,89, 32,141,199,368,459, 9909,13099,13160,13443,13535, 642 34 0 3 0 0 7 3449 + SGN-E332940 756 67 746 C11HBa0190J03.1 122911 9909 14037 8 109,58,169,93,158,48,28,16, 67,176,234,403,496,654,702,730, 9909,13099,13160,13443,13537,13796,13845,14021, 591 2 0 0 1 2 5 3667 + SGN-E325965 595 0 595 C11HBa0190J03.1 122911 111790 116050 6 39,121,48,74,131,180, 0,41,162,210,284,415, 111790,111830,113622,113768,114648,115870, 664 31 0 0 1 1 6 3449 + SGN-E326047 787 91 787 C11HBa0190J03.1 122911 9909 14053 7 109,58,169,252,48,26,33, 91,200,258,427,679,727,754, 9909,13099,13160,13443,13796,13845,14020, 669 0 0 0 0 0 0 0 - SGN-E317080 669 0 669 C11HBa0190J03.1 122911 85030 85699 1 669, 0, 85030, 425 1 0 0 0 0 1 1236 + SGN-E338237 426 0 426 C11HBa0190J03.1 122911 118625 120287 2 358,68, 0,358, 118625,120219, 730 31 0 0 0 0 6 3447 + SGN-E348546 789 28 789 C11HBa0190J03.1 122911 9909 14117 7 109,58,169,252,82,26,65, 28,137,195,364,616,698,724, 9909,13099,13160,13443,13796,14025,14052, 198 0 0 0 2 2 0 0 - SGN-E340856 202 2 202 C11HBa0190J03.1 122911 63395 63593 3 116,39,43, 0,117,157, 63395,63511,63550, 39 0 0 0 1 1 1 9 - SGN-E356876 337 47 87 C11HBa0190J03.1 122911 81761 81809 2 14,25, 250,265, 81761,81784, 39 0 0 0 1 1 1 9 - SGN-E357119 337 47 87 C11HBa0190J03.1 122911 81761 81809 2 14,25, 250,265, 81761,81784, 462 0 0 0 0 0 2 1954 + SGN-E357710 507 0 462 C11HBa0190J03.1 122911 120274 122690 3 24,69,369, 0,24,93, 120274,121947,122321, 776 36 0 0 1 1 5 3446 + SGN-E691191 874 61 874 C11HBa0190J03.1 122911 9909 14167 7 109,58,169,252,82,98,44, 61,170,228,397,649,731,830, 9909,13099,13160,13443,13796,14025,14123, 801 41 0 0 1 2 5 2380 + SGN-E695031 927 32 876 C11HBa0190J03.1 122911 14020 17242 6 379,57,62,159,121,64, 32,411,468,530,689,812, 14020,15817,16747,16890,17056,17178, 562 19 0 0 1 1 3 16 + SGN-E359490 587 0 582 C11HBa0190J03.1 122911 118678 119275 5 391,19,10,80,81, 0,391,410,420,501, 118678,119070,119102,119114,119194,