psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 34 0 0 0 0 0 0 0 - SGN-U313546 614 139 173 C11HBa0062I24.2 157776 135981 136015 1 34, 441, 135981, 460 0 0 0 0 0 0 0 + SGN-U314720 531 0 460 C11HBa0062I24.2 157776 143734 144194 1 460, 0, 143734, 1230 1 0 0 0 0 11 2910 + SGN-U314721 1231 0 1231 C11HBa0062I24.2 157776 139826 143967 12 96,39,29,84,54,78,54,60,96,102,81,458, 0,96,135,164,248,302,380,434,494,590,692,773, 139826,139923,140040,140183,140365,140742,140941,142188,142338,143063,143278,143509, 39 0 0 0 1 1 1 2 + SGN-U314979 1135 1092 1132 C11HBa0062I24.2 157776 138230 138271 2 30,9, 1092,1123, 138230,138262, 34 0 0 0 0 0 0 0 - SGN-U318232 2127 1946 1980 C11HBa0062I24.2 157776 135977 136011 1 34, 147, 135977, 34 1 0 0 0 0 1 3 - SGN-U318232 2127 1945 1980 C11HBa0062I24.2 157776 138216 138254 2 5,30, 147,152, 138216,138224, 36 0 0 0 0 0 0 0 + SGN-U318528 1891 23 59 C11HBa0062I24.2 157776 135979 136015 1 36, 23, 135979, 35 0 0 0 0 0 0 0 + SGN-U319112 1349 1218 1253 C11HBa0062I24.2 157776 135980 136015 1 35, 1218, 135980, 2033 1 0 0 0 0 9 2191 + SGN-U319354 2042 8 2042 C11HBa0062I24.2 157776 54002 58227 10 66,237,105,276,148,185,113,295,332,277, 8,74,311,416,692,840,1025,1138,1433,1765, 54002,54686,55156,55447,55926,56204,56481,56827,57616,57950, 33 0 0 0 0 0 0 0 + SGN-U319881 832 0 33 C11HBa0062I24.2 157776 135982 136015 1 33, 0, 135982, 996 0 0 0 1 33 3 2369 - SGN-U320619 1048 0 1029 C11HBa0062I24.2 157776 147761 151126 4 632,96,116,152, 19,651,747,896, 147761,150654,150833,150974, 34 0 0 0 0 0 0 0 - SGN-U320619 1048 151 185 C11HBa0062I24.2 157776 151212 151246 1 34, 863, 151212, 1266 1 0 0 0 0 5 2367 - SGN-U320945 1369 0 1267 C11HBa0062I24.2 157776 152443 156077 6 554,407,155,63,38,50, 102,656,1063,1218,1281,1319, 152443,153082,155101,155338,155880,156027, 1346 2 0 0 1 1 9 12560 + SGN-U321492 1350 0 1349 C11HBa0062I24.2 157776 5419 19327 11 90,257,34,137,67,100,164,47,51,397,4, 0,90,347,381,518,585,685,849,896,947,1345, 5419,8320,9572,11763,14570,16298,16945,18338,18484,18926,19323, 679 1 0 0 1 1 6 10880 + SGN-U321493 681 0 681 C11HBa0062I24.2 157776 5426 16986 8 83,218,34,137,67,100,14,27, 0,83,301,335,472,539,639,654, 5426,8320,9572,11763,14570,16298,16945,16959, 38 2 0 0 0 0 0 0 + SGN-U321842 1184 1062 1102 C11HBa0062I24.2 157776 135982 136022 1 40, 1062, 135982, 32 2 0 0 0 0 0 0 + SGN-U321842 1184 1067 1101 C11HBa0062I24.2 157776 138225 138259 1 34, 1067, 138225, 2494 1 0 0 0 0 4 2665 + SGN-U322260 2511 0 2495 C11HBa0062I24.2 157776 47526 52686 5 232,157,193,1295,618, 0,232,389,582,1877, 47526,48348,50080,50660,52068, 1209 4 0 0 1 4 4 1812 - SGN-U322493 1249 0 1217 C11HBa0062I24.2 157776 58686 61711 5 784,116,152,130,31, 32,816,932,1084,1218, 58686,59792,61313,61545,61680, 781 0 0 0 0 0 1 5397 + SGN-U323610 796 0 781 C11HBa0062I24.2 157776 28920 35098 2 298,483, 0,298, 28920,34615, 1049 0 0 0 0 0 2 1473 + SGN-U324166 1049 0 1049 C11HBa0062I24.2 157776 42667 45189 3 843,118,88, 0,843,961, 42667,44892,45101, 34 0 0 0 0 0 0 0 - SGN-U324412 1644 1584 1618 C11HBa0062I24.2 157776 135984 136018 1 34, 26, 135984, 1368 0 0 106 0 0 10 7248 - SGN-U324940 1493 1 1475 C11HBa0062I24.2 157776 65090 73812 11 417,211,59,102,54,74,97,117,113,87,143, 18,435,646,705,807,861,935,1032,1149,1262,1349, 65090,66205,67326,67566,67768,69508,70521,70702,72345,72624,73669, 1127 0 0 0 0 0 11 10415 - SGN-U325583 1139 0 1127 C11HBa0062I24.2 157776 85467 97009 12 177,84,126,60,63,121,74,70,120,80,79,73, 12,189,273,399,459,522,643,717,787,907,987,1066, 85467,86068,86228,88335,88949,89134,94558,94697,95474,96540,96782,96936, 58 4 0 0 0 0 0 0 - SGN-U326454 1292 1108 1170 C11HBa0062I24.2 157776 20626 20688 1 62, 122, 20626, 312 0 0 0 1 3 3 2314 - SGN-U329012 853 0 315 C11HBa0062I24.2 157776 499 3125 4 54,77,163,18, 538,592,669,835, 499,2672,2942,3107, 37 2 0 0 0 0 0 0 - SGN-U329702 1321 966 1005 C11HBa0062I24.2 157776 115399 115438 1 39, 316, 115399, 787 14 0 1 0 0 5 1223 - SGN-U330904 802 0 802 C11HBa0062I24.2 157776 35848 37873 6 17,24,161,208,250,142, 0,17,41,202,410,660, 35848,35866,35891,36235,36523,37731, 53 4 0 0 0 0 0 0 - SGN-U331368 788 384 441 C11HBa0062I24.2 157776 108243 108300 1 57, 347, 108243, 361 1 0 1 0 0 0 0 - SGN-U331468 377 0 363 C11HBa0062I24.2 157776 35231 35594 1 363, 14, 35231, 33 0 0 0 0 0 0 0 + SGN-U333075 724 599 632 C11HBa0062I24.2 157776 135982 136015 1 33, 599, 135982, 710 0 0 0 0 0 3 4111 + SGN-U337384 713 0 710 C11HBa0062I24.2 157776 5418 10239 4 91,218,34,367, 0,91,309,343, 5418,8320,9572,9872, 44 0 0 0 1 20 0 0 - SGN-U337964 662 360 424 C11HBa0062I24.2 157776 135981 136025 2 34,10, 238,292, 135981,136015, 33 1 0 0 0 0 0 0 - SGN-U338039 402 166 200 C11HBa0062I24.2 157776 135981 136015 1 34, 202, 135981, 473 0 0 0 0 0 6 2987 + SGN-U338979 473 0 473 C11HBa0062I24.2 157776 139844 143304 7 78,39,78,54,96,102,26, 0,78,117,195,249,345,447, 139844,139923,140742,140941,142338,143063,143278, 41 0 0 0 1 1 0 0 - SGN-U339668 528 468 510 C11HBa0062I24.2 157776 135979 136020 2 4,37, 18,23, 135979,135983, 61 3 0 0 1 30 2 36 - SGN-U340018 672 441 535 C11HBa0062I24.2 157776 108266 108366 3 33,19,12, 137,200,219, 108266,108331,108354, 432 26 0 0 3 16 4 2005 + SGN-U341633 491 17 491 C11HBa0062I24.2 157776 24260 26723 6 30,18,60,99,96,155, 17,47,65,127,232,336, 24260,24292,24323,24383,26471,26568, 34 0 0 0 0 0 0 0 + SGN-U342126 560 294 328 C11HBa0062I24.2 157776 135984 136018 1 34, 294, 135984, 513 0 0 0 0 0 0 0 - SGN-U342160 513 0 513 C11HBa0062I24.2 157776 127900 128413 1 513, 0, 127900, 33 2 0 0 0 0 0 0 - SGN-U343086 770 345 380 C11HBa0062I24.2 157776 115400 115435 1 35, 390, 115400, 275 15 0 0 2 26 1 25 + SGN-U344342 407 0 316 C11HBa0062I24.2 157776 45565 45880 3 206,70,14, 0,207,302, 45565,45771,45866,