psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 675 0 0 0 1 27 4 1343 + SGN-U313661 740 30 732 C11HBa0139J14.2 118142 19558 21576 5 70,96,227,201,81, 30,100,196,423,651, 19558,19738,20946,21275,21495, 38 0 0 0 1 2 1 462 - SGN-U313747 1794 1754 1794 C11HBa0139J14.2 118142 48147 48647 2 17,21, 0,19, 48147,48626, 36 0 0 0 0 0 1 467 - SGN-U314549 717 420 456 C11HBa0139J14.2 118142 48144 48647 2 15,21, 261,276, 48144,48626, 40 0 0 0 0 0 2 245 - SGN-U315173 1276 1108 1148 C11HBa0139J14.2 118142 47880 48165 3 13,8,19, 128,141,149, 47880,48078,48146, 36 0 0 0 0 0 1 460 - SGN-U317335 649 548 584 C11HBa0139J14.2 118142 48145 48641 2 19,17, 65,84, 48145,48624, 1850 5 0 0 0 0 11 5028 - SGN-U320246 1860 0 1855 C11HBa0139J14.2 118142 22599 29482 12 154,224,133,218,177,108,76,122,240,89,86,228, 5,159,383,516,734,911,1019,1095,1217,1457,1546,1632, 22599,23807,24915,25519,25875,26166,26464,27038,27298,27640,27795,29254, 43 1 0 0 1 2 0 0 + SGN-U320633 828 726 772 C11HBa0139J14.2 118142 109226 109270 2 15,29, 726,743, 109226,109241, 970 1 0 0 0 0 2 4720 - SGN-U321802 1008 0 971 C11HBa0139J14.2 118142 100549 106240 3 529,308,134, 37,566,874, 100549,101493,106106, 657 0 0 0 0 0 3 3943 + SGN-U322177 668 0 657 C11HBa0139J14.2 118142 82219 86819 4 85,100,188,284, 0,85,185,373, 82219,85388,85587,86535, 680 0 0 0 0 0 0 0 - SGN-U322337 747 18 698 C11HBa0139J14.2 118142 36468 37148 1 680, 49, 36468, 50 2 0 0 1 165 1 32701 + SGN-U324118 1393 1154 1371 C11HBa0139J14.2 118142 79538 112291 2 23,29, 1154,1342, 79538,112262, 730 1 0 0 0 0 1 255 - SGN-U324805 741 0 731 C11HBa0139J14.2 118142 21679 22665 2 665,66, 10,675, 21679,22599, 51 0 0 0 0 0 3 16582 + SGN-U327108 842 375 426 C11HBa0139J14.2 118142 99137 115770 4 20,8,15,8, 375,395,403,418, 99137,115719,115741,115762, 149 5 0 0 1 28 1 206 + SGN-U328391 1201 956 1138 C11HBa0139J14.2 118142 72291 72651 2 142,12, 956,1126, 72291,72639, 627 0 0 0 0 0 0 0 - SGN-U329682 635 0 627 C11HBa0139J14.2 118142 58478 59105 1 627, 8, 58478, 843 0 0 0 0 0 4 2445 + SGN-U330019 843 0 843 C11HBa0139J14.2 118142 54755 58043 5 391,136,68,87,161, 0,391,527,595,682, 54755,55749,56218,56372,57882, 689 4 0 0 0 0 1 1 - SGN-U330177 693 0 693 C11HBa0139J14.2 118142 102342 103036 2 214,479, 0,214, 102342,102557, 156 9 0 0 1 4 2 2 - SGN-U332501 674 413 582 C11HBa0139J14.2 118142 7791 7958 4 16,6,60,83, 92,108,114,178, 7791,7808,7815,7875, 799 0 0 0 0 0 5 1556 + SGN-U332965 799 0 799 C11HBa0139J14.2 118142 63139 65494 6 277,29,195,85,76,137, 0,277,306,501,586,662, 63139,64396,64533,64821,65066,65357, 79 6 0 0 0 0 0 0 - SGN-U333118 726 641 726 C11HBa0139J14.2 118142 19217 19302 1 85, 0, 19217, 495 3 0 1 2 10 9 1237 + SGN-U334525 515 6 515 C11HBa0139J14.2 118142 19738 21474 10 14,17,5,20,10,10,43,4,177,199, 6,20,37,42,62,80,92,135,139,316, 19738,19754,19772,19778,19799,19821,20947,20991,20996,21275, 351 19 0 0 1 1 3 1205 + SGN-U334526 384 0 371 C11HBa0139J14.2 118142 19593 21168 5 35,114,213,4,4, 0,35,149,363,367, 19593,19720,20946,21159,21164, 87 0 0 0 0 0 0 0 - SGN-U334527 516 1 88 C11HBa0139J14.2 118142 21389 21476 1 87, 428, 21389, 40 0 0 0 1 11 1 463 - SGN-U336859 556 450 501 C11HBa0139J14.2 118142 48144 48647 2 19,21, 55,85, 48144,48626, 439 0 0 0 0 0 1 1389 - SGN-U337456 439 0 439 C11HBa0139J14.2 118142 101532 103360 2 269,170, 0,269, 101532,103190, 42 0 0 1 0 0 1 464 - SGN-U338804 766 649 692 C11HBa0139J14.2 118142 48140 48647 2 24,19, 74,98, 48140,48628, 48 1 0 0 1 9 4 15 + SGN-U339827 265 171 229 C11HBa0139J14.2 118142 115297 115361 5 5,8,5,12,19, 171,176,193,198,210, 115297,115305,115317,115323,115342, 322 4 0 0 0 0 0 0 + SGN-U342324 354 28 354 C11HBa0139J14.2 118142 52849 53175 1 326, 28, 52849, 879 1 0 0 0 0 2 3852 - SGN-U345838 880 0 880 C11HBa0139J14.2 118142 37644 42376 3 247,32,601, 0,247,279, 37644,41742,41775,