psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 48 0 0 0 1 2 3 426 + SGN-U312550 918 860 910 C11HBa0190J03.1 122911 65353 65827 4 19,5,17,7, 860,879,884,903, 65353,65454,65797,65820, 50 0 0 0 2 46 2 408 + SGN-U313606 809 709 805 C11HBa0190J03.1 122911 65355 65813 3 22,11,17, 709,757,788, 65355,65784,65796, 81 7 0 0 0 0 0 0 - SGN-U314893 510 135 223 C11HBa0190J03.1 122911 82774 82862 1 88, 287, 82774, 34 0 0 0 0 0 0 0 + SGN-U314894 1596 188 222 C11HBa0190J03.1 122911 84045 84079 1 34, 188, 84045, 42 2 0 0 0 0 0 0 - SGN-U315609 1221 252 296 C11HBa0190J03.1 122911 5412 5456 1 44, 925, 5412, 59 0 0 0 2 11 3 288 - SGN-U316248 2727 2610 2680 C11HBa0190J03.1 122911 65261 65608 5 13,4,6,18,18, 47,60,64,74,99, 65261,65306,65353,65359,65590, 1181 0 0 0 1 1 1 305 + SGN-U317285 1224 0 1182 C11HBa0190J03.1 122911 121204 122690 3 565,247,369, 0,566,813, 121204,121769,122321, 876 0 0 0 0 0 3 3191 + SGN-U317286 876 0 876 C11HBa0190J03.1 122911 118625 122692 4 357,79,69,371, 0,357,436,505, 118625,120219,121947,122321, 1439 68 0 0 1 2 10 5826 + SGN-U319810 1591 32 1541 C11HBa0190J03.1 122911 9909 17242 11 109,58,169,252,82,374,57,62,159,121,64, 32,141,199,368,620,702,1076,1133,1195,1354,1477, 9909,13099,13160,13443,13796,14025,15817,16747,16890,17056,17178, 430 0 0 0 0 0 2 3195 + SGN-U319811 547 117 547 C11HBa0190J03.1 122911 9908 13533 3 110,230,90, 117,227,457, 9908,13099,13443, 105 6 0 0 0 0 2 49 + SGN-U319811 547 0 111 C11HBa0190J03.1 122911 48179 48339 3 28,9,74, 0,28,37, 48179,48241,48265, 1117 2 0 0 0 0 0 0 - SGN-U321739 1235 0 1119 C11HBa0190J03.1 122911 92623 93742 1 1119, 116, 92623, 1022 50 0 0 1 1 1 3337 - SGN-U321739 1235 0 1073 C11HBa0190J03.1 122911 75625 80034 3 29,108,935, 162,192,300, 75625,75654,79099, 965 19 0 0 2 31 1 27 - SGN-U321740 1015 0 1015 C11HBa0190J03.1 122911 93564 94575 3 6,623,355, 0,7,660, 93564,93570,94220, 972 41 0 0 2 2 0 0 - SGN-U321740 1015 0 1015 C11HBa0190J03.1 122911 79856 80869 3 6,446,561, 0,7,454, 79856,79862,80308, 247 11 0 0 3 46 10 85 + SGN-U322060 806 126 430 C11HBa0190J03.1 122911 10748 11091 12 9,102,23,12,13,15,5,16,4,18,13,28, 126,146,257,280,292,305,320,351,367,371,389,402, 10748,10758,10879,10903,10944,10958,10974,10979,10996,11015,11048,11063, 682 20 0 0 3 28 6 349 - SGN-U322985 747 1 731 C11HBa0190J03.1 122911 81602 82653 7 94,16,57,134,72,118,211, 16,117,143,200,345,417,535, 81602,81701,81718,81783,81924,82323,82442, 672 0 0 0 0 0 2 407 + SGN-U323268 682 0 672 C11HBa0190J03.1 122911 116527 117606 3 194,83,395, 0,194,277, 116527,116812,117211, 241 13 0 0 3 53 3 37 + SGN-U324388 1898 4 311 C11HBa0190J03.1 122911 11295 11586 4 13,11,149,81, 4,28,78,230, 11295,11320,11354,11505, 270 16 0 1 3 9 0 0 - SGN-U324389 631 318 614 C11HBa0190J03.1 122911 11299 11586 4 79,133,19,56, 17,97,231,257, 11299,11378,11511,11530, 77 6 0 0 0 0 1 100 + SGN-U324513 544 420 503 C11HBa0190J03.1 122911 110995 111178 2 6,77, 420,426, 110995,111101, 126 3 0 0 0 0 1 3 + SGN-U326546 1401 1166 1295 C11HBa0190J03.1 122911 81277 81409 2 103,26, 1166,1269, 81277,81383, 445 0 0 0 0 0 1 3091 + SGN-U329671 452 0 445 C11HBa0190J03.1 122911 48268 51804 2 98,347, 0,98, 48268,51457, 613 0 0 0 0 0 4 3666 + SGN-U331661 613 0 613 C11HBa0190J03.1 122911 111771 116050 5 180,48,74,131,180, 0,180,228,302,433, 111771,113622,113768,114648,115870, 61 3 0 0 1 1 1 267 - SGN-U332237 317 231 296 C11HBa0190J03.1 122911 100940 101271 3 17,38,9, 21,39,77, 100940,100957,101262, 562 19 0 0 1 1 3 16 + SGN-U336028 587 0 582 C11HBa0190J03.1 122911 118678 119275 5 391,19,10,80,81, 0,391,410,420,501, 118678,119070,119102,119114,119194, 564 0 0 0 0 0 2 2419 + SGN-U336029 564 0 564 C11HBa0190J03.1 122911 118653 121636 3 330,79,155, 0,330,409, 118653,120219,121481, 590 13 0 0 2 113 4 135 + SGN-U336030 716 0 716 C11HBa0190J03.1 122911 118677 119415 6 392,19,10,80,81,21, 0,392,411,421,502,695, 118677,119070,119102,119114,119194,119394, 314 13 0 0 3 47 3 6 - SGN-U336031 417 43 417 C11HBa0190J03.1 122911 122377 122710 6 66,88,29,57,80,7, 0,85,187,230,287,367, 122377,122443,122531,122564,122622,122703, 613 17 0 0 3 47 4 578 - SGN-U336032 691 14 691 C11HBa0190J03.1 122911 121502 122710 7 177,69,122,88,29,57,88, 0,177,246,387,489,532,589, 121502,121947,122321,122443,122531,122564,122622, 322 17 0 0 1 17 3 3230 + SGN-U336930 571 209 565 C11HBa0190J03.1 122911 9911 13480 4 107,19,176,37, 209,316,352,528, 9911,13099,13153,13443, 199 11 0 0 0 0 2 13 + SGN-U336930 571 0 210 C11HBa0190J03.1 122911 48123 48346 3 9,15,186, 0,9,24, 48123,48144,48160, 713 34 0 0 0 0 6 3512 + SGN-U336931 831 84 831 C11HBa0190J03.1 122911 9909 14168 7 109,58,41,62,252,82,143, 84,193,251,292,354,606,688, 9909,13099,13160,13267,13443,13796,14025, 35 0 0 0 0 0 1 425 + SGN-U337020 609 471 506 C11HBa0190J03.1 122911 65354 65814 2 20,15, 471,491, 65354,65799, 550 0 0 0 0 0 0 0 + SGN-U337445 570 20 570 C11HBa0190J03.1 122911 75602 76152 1 550, 20, 75602, 219 0 0 0 0 0 0 0 - SGN-U337446 362 0 219 C11HBa0190J03.1 122911 92623 92842 1 219, 143, 92623, 119 8 0 0 1 11 1 7 - SGN-U337446 362 0 138 C11HBa0190J03.1 122911 79000 79134 2 92,35, 224,327, 79000,79099, 608 0 0 0 0 0 0 0 - SGN-U337447 708 0 608 C11HBa0190J03.1 122911 95849 96457 1 608, 100, 95849, 780 66 0 0 1 15 3 15 - SGN-U338220 861 0 861 C11HBa0190J03.1 122911 84680 85541 4 208,4,287,347, 0,208,212,514, 84680,84889,84895,85194, 669 0 0 0 0 0 0 0 - SGN-U338221 669 0 669 C11HBa0190J03.1 122911 85030 85699 1 669, 0, 85030, 335 1 0 0 0 0 0 0 - SGN-U338593 435 99 435 C11HBa0190J03.1 122911 82907 83243 1 336, 0, 82907, 39 1 0 0 1 1 1 9 + SGN-U339021 553 135 176 C11HBa0190J03.1 122911 81761 81810 2 14,26, 135,150, 81761,81784, 36 0 0 0 0 0 1 425 + SGN-U340750 424 179 215 C11HBa0190J03.1 122911 65353 65814 2 21,15, 179,200, 65353,65799, 68 1 0 0 0 0 0 0 + SGN-U343906 1449 507 576 C11HBa0190J03.1 122911 64522 64591 1 69, 507, 64522, 198 0 0 0 2 2 0 0 - SGN-U346110 202 2 202 C11HBa0190J03.1 122911 63395 63593 3 116,39,43, 0,117,157, 63395,63511,63550,