psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 31 1 0 0 0 0 0 0 + SGN-U312854 764 484 516 C11HBa0323E19.1 141216 38829 38861 1 32, 484, 38829, 292 7 0 0 1 5 2 22 - SGN-U313322 661 357 661 C11HBa0323E19.1 141216 17107 17428 3 170,26,103, 0,175,201, 17107,17297,17325, 330 25 0 0 1 2 2 37 + SGN-U313328 1289 507 864 C11HBa0323E19.1 141216 17022 17414 4 23,23,220,89, 507,530,553,775, 17022,17054,17105,17325, 37 1 0 0 1 1 0 0 - SGN-U313871 1061 1009 1048 C11HBa0323E19.1 141216 130210 130248 2 13,25, 13,27, 130210,130223, 40 0 0 0 0 0 1 290 + SGN-U314085 2122 994 1034 C11HBa0323E19.1 141216 90813 91143 2 19,21, 994,1013, 90813,91122, 37 1 0 0 0 0 0 0 + SGN-U314410 682 555 593 C11HBa0323E19.1 141216 17027 17065 1 38, 555, 17027, 51 3 0 0 0 0 0 0 - SGN-U315035 1170 969 1023 C11HBa0323E19.1 141216 41298 41352 1 54, 147, 41298, 37 0 0 0 0 0 1 290 - SGN-U316003 928 758 795 C11HBa0323E19.1 141216 90813 91140 2 19,18, 133,152, 90813,91122, 1561 9 0 0 1 1 3 2841 - SGN-U316198 1586 0 1571 C11HBa0323E19.1 141216 82641 87052 5 623,168,276,491,12, 15,638,806,1082,1574, 82641,83899,85141,86549,87040, 599 4 0 0 0 0 1 114 - SGN-U316461 628 0 603 C11HBa0323E19.1 141216 107145 107862 2 462,141, 25,487, 107145,107721, 1553 4 0 0 0 0 5 1751 - SGN-U316462 1655 8 1565 C11HBa0323E19.1 141216 107142 110450 6 465,199,277,139,166,311, 90,555,754,1031,1170,1336, 107142,107721,108088,108560,109027,110139, 115 0 0 1 0 0 0 0 - SGN-U317516 1780 1664 1780 C11HBa0323E19.1 141216 4323 4439 1 116, 0, 4323, 1073 2 0 0 0 0 4 1048 - SGN-U317517 1075 0 1075 C11HBa0323E19.1 141216 3991 6114 5 485,162,55,265,108, 0,485,647,702,967, 3991,5053,5440,5627,6006, 51 1 0 0 1 145 1 451 + SGN-U317942 1643 874 1071 C11HBa0323E19.1 141216 44632 45135 2 23,29, 874,1042, 44632,45106, 104 2 0 0 1 43 3 23 - SGN-U317986 1842 1677 1826 C11HBa0323E19.1 141216 17299 17428 4 25,44,8,29, 16,41,128,136, 17299,17325,17370,17399, 35 0 0 0 1 1 1 6 - SGN-U318232 2127 1946 1982 C11HBa0323E19.1 141216 70190 70231 2 6,29, 145,152, 70190,70202, 616 0 0 0 0 0 1 2249 + SGN-U318658 751 0 616 C11HBa0323E19.1 141216 132239 135104 2 174,442, 0,174, 132239,134662, 1236 1 0 0 2 2 1 1590 + SGN-U318659 1239 0 1239 C11HBa0323E19.1 141216 132218 135045 4 195,975,26,41, 0,195,1171,1198, 132218,134003,134978,135004, 591 0 0 0 0 0 0 0 - SGN-U318957 591 0 591 C11HBa0323E19.1 141216 63380 63971 1 591, 0, 63380, 834 5 0 0 1 3 1 1 - SGN-U318958 900 0 842 C11HBa0323E19.1 141216 67229 68069 2 750,89, 58,811, 67229,67980, 436 11 0 0 1 133 2 107 - SGN-U318958 900 126 706 C11HBa0323E19.1 141216 65140 65694 3 11,404,32, 194,205,742, 65140,65162,65662, 782 0 0 0 0 0 0 0 - SGN-U318959 782 0 782 C11HBa0323E19.1 141216 65162 65944 1 782, 0, 65162, 447 13 0 0 3 72 2 109 - SGN-U318959 782 250 782 C11HBa0323E19.1 141216 67376 67945 4 404,13,11,32, 0,417,436,500, 67376,67833,67846,67913, 32 1 0 0 0 0 0 0 - SGN-U319028 1256 875 908 C11HBa0323E19.1 141216 70201 70234 1 33, 348, 70201, 1145 0 0 0 0 0 8 2875 + SGN-U319390 1163 0 1145 C11HBa0323E19.1 141216 42336 46356 9 37,72,66,66,87,117,75,87,538, 0,37,109,175,241,328,445,520,607, 42336,42475,42679,42976,44412,44602,44937,45100,45818, 33 0 0 0 0 0 0 0 + SGN-U319881 832 0 33 C11HBa0323E19.1 141216 70202 70235 1 33, 0, 70202, 682 0 0 0 0 0 2 2587 - SGN-U321146 749 29 711 C11HBa0323E19.1 141216 78854 82123 3 381,103,198, 38,419,522, 78854,79798,81925, 33 1 0 0 0 0 0 0 + SGN-U321842 1184 1062 1096 C11HBa0323E19.1 141216 70202 70236 1 34, 1062, 70202, 91 4 0 0 0 0 0 0 - SGN-U322488 1584 1489 1584 C11HBa0323E19.1 141216 17337 17432 1 95, 0, 17337, 1284 0 0 0 0 0 12 3829 + SGN-U322577 1284 0 1284 C11HBa0323E19.1 141216 37401 42514 13 129,81,120,123,78,89,109,69,111,56,178,102,39, 0,129,210,330,453,531,620,729,798,909,965,1143,1245, 37401,37623,37802,38511,39152,39324,39494,40533,40675,41838,42017,42271,42475, 846 5 0 0 0 0 2 2 + SGN-U322983 851 0 851 C11HBa0323E19.1 141216 61549 62402 3 678,16,157, 0,678,694, 61549,62228,62245, 636 4 0 0 0 0 0 0 + SGN-U322984 640 0 640 C11HBa0323E19.1 141216 62254 62894 1 640, 0, 62254, 31 0 0 0 0 0 0 0 - SGN-U323461 944 314 345 C11HBa0323E19.1 141216 70199 70230 1 31, 599, 70199, 1062 0 0 0 0 0 9 6302 - SGN-U323487 1062 0 1062 C11HBa0323E19.1 141216 6060 13424 10 157,180,98,67,67,113,45,108,57,170, 0,157,337,435,502,569,682,727,835,892, 6060,6343,6636,7592,8160,9684,10589,12136,12441,13254, 651 0 0 0 0 0 4 43545 + SGN-U323935 675 10 661 C11HBa0323E19.1 141216 46943 91139 5 164,37,84,345,21, 10,174,211,295,640, 46943,47319,48753,49202,91118, 1204 1 0 0 1 15 3 2324 + SGN-U324122 1229 1 1221 C11HBa0323E19.1 141216 119111 122640 5 44,114,229,294,524, 1,45,159,403,697, 119111,119738,121037,121266,122116, 313 1 0 0 1 11 1 10 - SGN-U324584 877 523 848 C11HBa0323E19.1 141216 76561 76885 2 299,15, 29,339, 76561,76870, 934 4 0 0 1 1 8 3040 + SGN-U325178 953 0 939 C11HBa0323E19.1 141216 135900 139878 10 29,73,22,71,80,115,53,129,347,19, 0,29,103,125,196,276,391,444,573,920, 135900,135930,136003,137288,137536,138493,138820,139302,139511,139859, 35 0 0 0 0 0 1 290 - SGN-U325347 1022 987 1022 C11HBa0323E19.1 141216 90816 91141 2 16,19, 0,16, 90816,91122, 62 3 0 0 1 189 1 21434 - SGN-U325430 886 1 255 C11HBa0323E19.1 141216 69643 91142 2 43,22, 631,863, 69643,91120, 871 7 0 0 2 11 5 5661 - SGN-U326570 947 44 933 C11HBa0323E19.1 141216 91272 97811 7 256,76,41,148,120,116,121, 14,270,346,395,543,663,782, 91272,93194,93524,94775,95542,97574,97690, 34 0 0 0 0 0 1 3 - SGN-U327108 842 365 399 C11HBa0323E19.1 141216 70201 70238 2 29,5, 443,472, 70201,70233, 1233 10 0 0 2 2 7 2866 - SGN-U327652 1245 0 1245 C11HBa0323E19.1 141216 18442 22551 10 25,452,108,117,136,26,159,117,54,49, 0,26,478,586,703,840,866,1025,1142,1196, 18442,18467,19079,19303,19508,19644,20573,20837,22313,22502, 36 1 0 0 0 0 1 1 - SGN-U327878 1003 624 661 C11HBa0323E19.1 141216 130213 130251 2 9,28, 342,351, 130213,130223, 518 1 0 0 0 0 1 115 + SGN-U328096 519 0 519 C11HBa0323E19.1 141216 127823 128457 2 512,7, 0,512, 127823,128450, 33 0 0 0 0 0 0 0 + SGN-U329622 1018 221 254 C11HBa0323E19.1 141216 70203 70236 1 33, 221, 70203, 30 0 0 0 0 0 0 0 + SGN-U331091 660 193 223 C11HBa0323E19.1 141216 130215 130245 1 30, 193, 130215, 490 1 0 0 0 0 0 0 - SGN-U331457 491 0 491 C11HBa0323E19.1 141216 16016 16507 1 491, 0, 16016, 727 0 0 0 0 0 4 552 + SGN-U332249 732 0 727 C11HBa0323E19.1 141216 105586 106865 5 12,68,90,70,487, 0,12,80,170,240, 105586,105696,106012,106224,106378, 306 3 0 0 0 0 0 0 - SGN-U332290 321 0 309 C11HBa0323E19.1 141216 22548 22857 1 309, 12, 22548, 648 0 0 0 0 0 0 0 - SGN-U332669 648 0 648 C11HBa0323E19.1 141216 71754 72402 1 648, 0, 71754, 701 1 0 1 0 0 0 0 + SGN-U332758 703 0 703 C11HBa0323E19.1 141216 125361 126064 1 703, 0, 125361, 33 0 0 0 0 0 0 0 + SGN-U333075 724 599 632 C11HBa0323E19.1 141216 70202 70235 1 33, 599, 70202, 240 19 0 0 0 0 0 0 + SGN-U334276 506 247 506 C11HBa0323E19.1 141216 17018 17277 1 259, 247, 17018, 100 3 0 0 0 0 0 0 - SGN-U334277 387 284 387 C11HBa0323E19.1 141216 17325 17428 1 103, 0, 17325, 125 2 0 0 0 0 1 1 + SGN-U335533 822 692 819 C11HBa0323E19.1 141216 82631 82759 2 96,31, 692,788, 82631,82728, 855 5 0 0 1 3 2 2215 - SGN-U336675 906 43 906 C11HBa0323E19.1 141216 64999 68074 3 246,520,94, 0,246,769, 64999,67459,67980, 521 10 0 0 1 1 1 1 - SGN-U336802 540 8 540 C11HBa0323E19.1 141216 45827 46359 3 14,508,9, 0,15,523, 45827,45841,46350, 86 3 0 0 0 0 0 0 + SGN-U337170 812 28 117 C11HBa0323E19.1 141216 17088 17177 1 89, 28, 17088, 883 4 0 0 0 0 3 1610 + SGN-U337914 894 7 894 C11HBa0323E19.1 141216 46824 49321 4 283,37,188,379, 7,290,327,515, 46824,47319,48753,48942, 768 4 0 0 0 0 3 1974 + SGN-U337915 820 1 773 C11HBa0323E19.1 141216 46803 49549 4 304,37,84,347, 1,305,342,426, 46803,47319,48753,49202, 660 26 0 0 0 0 1 1 - SGN-U338044 686 0 686 C11HBa0323E19.1 141216 76968 77655 2 66,620, 0,66, 76968,77035, 35 0 0 0 1 1 1 6 - SGN-U338769 444 240 276 C11HBa0323E19.1 141216 96898 96939 2 29,6, 168,198, 96898,96933, 41 0 0 0 1 13 1 285 - SGN-U339135 727 544 598 C11HBa0323E19.1 141216 90813 91139 2 18,23, 129,160, 90813,91116, 597 8 0 0 0 0 1 1194 + SGN-U339919 605 0 605 C11HBa0323E19.1 141216 126032 127831 2 486,119, 0,486, 126032,127712, 576 0 0 0 0 0 4 3511 + SGN-U340333 576 0 576 C11HBa0323E19.1 141216 25197 29284 5 88,64,145,158,121, 0,88,152,297,455, 25197,25621,26964,27200,29163, 536 0 0 0 0 0 2 3352 + SGN-U340936 536 0 536 C11HBa0323E19.1 141216 101686 105574 3 248,259,29, 0,248,507, 101686,103704,105545, 33 0 0 0 0 0 0 0 + SGN-U342626 702 453 486 C11HBa0323E19.1 141216 70202 70235 1 33, 453, 70202, 38 2 0 0 0 0 1 13 + SGN-U343023 579 54 94 C11HBa0323E19.1 141216 114487 114540 2 32,8, 54,86, 114487,114532, 59 0 0 0 0 0 0 0 + SGN-U345977 514 0 59 C11HBa0323E19.1 141216 17372 17431 1 59, 0, 17372, 137 1 0 0 1 1 0 0 + SGN-U346081 526 0 139 C11HBa0323E19.1 141216 120419 120557 2 29,109, 0,30, 120419,120448, 517 0 0 0 0 0 4 3555 + SGN-U346403 517 0 517 C11HBa0323E19.1 141216 29644 33716 5 87,109,116,99,106, 0,87,196,312,411, 29644,29806,30006,30336,33610, 31 0 0 0 0 0 0 0 - SGN-U346591 446 22 53 C11HBa0323E19.1 141216 6883 6914 1 31, 393, 6883,