<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:59:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="+" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="6423" stop="7570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6717" g_stop="7270" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6717" e_stop="7270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="-" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="8668" stop="7742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8368" g_stop="8038" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8368" e_stop="8038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTCGCTAACGTCACTGTTTTAGCATTACAATCCAAAATCACAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATGAGTGTTACTCCCTACAAAAGTCACCAAACAAGACCTATACACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="-" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="11140" stop="10363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10840" g_stop="10664" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10840" e_stop="10664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACAAGCACGAAGTATATCCTCCAACACTTGAATCGTTCGCTCAGATTGACCACCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322090" ref_strand="+" ref_description="SGN-U322090        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | chorismate mutase, cytosolic (CM2), identical to gi:5732016 | chr5:3430547-3432463 REVERSE | Aliases: None(evalue: 1e-66, score=250) genbank/nr: gi|5732018|gb|AAD48923.1| chorimate mutase [Lycopersicon esculentum](evalue: 3e-127, score=457)">
      <seq>gagaactagtctcgagttttttttttttttttttttttttttttttttttttttttccatcctctccccacaaaaaatctttttcacaattttgtcaatcaaaaaaaaaaaaaaagaaaagaaaaaaatggcttgtggtgatgatgataaattgtgtcttgattcaataagaaagagtttaattagacaagaagataccattattttcaaccttattgaaagaatcaaattcccaataaatccaactttatacaaacaacaattacctccttcttccaatttttcaggatccttatttcaatacttgtttcaagaaacagaatcccttcaatccaaggttggtagatatttggccccagaggaaaatcctttcttcccagataatttgtctgactcaatcataccacttaccaaatgcacaccagttttgcatcctgcagcagaatcagtaaatgtaaatgagaaaatattggatatttatataaatcagatgcttccactattttgtactgaggttaatgatgatgcaaactttgcaactactgctgcttgtgacattcagctcttgcaggcactatctagaaggattcactatggaaaatttgttgctgaagttaaatttagagatagtattgatgaatataaaccatttattcttgctcaggatagagatgctttaatgaagttattaacatttgaagcggttgaagagatggtgaagaagagagtagcgaagaaagctaaagtgtttggtcaagaagtgagcttaaacgataacgctgaagaagtgaagggcaaaattgatccattgttagtttcacgtttatatgatgaatgggttatgcctttgactaaacttgtcgaagttgaatacctcctgcgtcgtcttgattaattgagcttattattattattgtaatgattttcgtcaccattattatcatttgttattgttatcgatcgacatttatgcagatgaaaatgacgattcatgacatttgtgaattgccaaaaagttgagctaattgtcattctttagttatggatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="+" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="15012" stop="19111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15328" g_stop="15614" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="337" r_length="288" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15615" i_stop="17337" i_length="1723">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17338" g_stop="17424" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="424" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17425" i_stop="17554" i_length="130">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17555" g_stop="17701" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="571" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17702" i_stop="18241" i_length="540">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18242" g_stop="18334" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="664" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18335" i_stop="18424" i_length="90">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18425" g_stop="18811" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="1051" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="49" polyA_stop="16"/>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="+" ref_id="SGN-U322090" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1001</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15328" e_stop="15614"/>
          <exon e_start="17338" e_stop="17424"/>
          <exon e_start="17555" e_stop="17701"/>
          <exon e_start="18242" e_stop="18334"/>
          <exon e_start="18425" e_stop="18811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAA-AAAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAGGTAACAATTTCTCTTCTTCTGTTTGTTTTTCAAAGCCATAATCAGAATTTTTAAAGTGCTAATAATTAAGTTTTAGATTTGATATGCATATAAAATTTAATAAATGAACATAAAAATATTCTAAAAGTTATTAAATTCGATCGAACTGGTATTTGTTGTTAAAAGTTATTAAATTCGATCGTACTGATATTTGTTGTTAGGAGATGTTAATGGTGTTTGTCTTTTATATTCTTACTCTTTTGGTAGGTTTTCCTTATTTTTGGGAACTTAATATATTCCCTTGTTTACTTGTTTGCTATTTTAAATTTGGGTTGACCATGACTTATTTATATTTTATCTATTTTTTCACTACATAGTGGATGATTCTATAATGACACTTAGGTCTCATTTGTTTACATTTAAAAAGAGTTTGAATTTTAATTATTTAGATTGGTCCTTATATTTTAAAATTAAATTTTAATTATTTATATTTATTTTATTAAGTTTGTTTGTTTTGTTTTTTATAGTCTCTTAATGAATAAGATCTATAACATACTCTTAATATCACTGATATTCAAAAATAAAACTCATATATTAATTCAACTATATGAGTACAATTCATAAAAGTTGTTTTCTTACTTAATTAATGTTAATTACATGCTTACCGTTATAATTTTTTTTATTCTTATTAACTTAATATATGTTTTACTTTCATACATTAATCAATATATTTGAATTTCTATGCAATATAATATTTAGCACAATGCTAGAAAATAAGAAAGTATTAATTATTTAATCGATAGCAATAACAAATGTCTATTATAAAGTAAAATGTTTTCATAAATATTATATTATTATTATTCTATGTAAACTATTTTACATTGTATTATATTAGATTCTAATAGTTTTTGAGTGGAAATAATACTCATGTTGATGATGTAACTTAATGTTAAATTCTTAAAAGATAAATCATATTACCTTGTTACGATAAAAATGTTCAAAATATTATTTTTTATATAAAAAAAACTATTTTACTAAAATGAGATTTTTATAATATTTTATTGATATAACATTTAATTTTATATGAACATTCAAATATTGAAAATAAACAATCCTAATAATTTAGTGTTCAGAATCAAAAACAACATTTTTATTTGAATTTACACAACTAGATCTTAATGCACATCTTAATATTCAGATTTACATTCAATTTCAGATGTCTTAATCTTAATCGAAATAAATAAAACCTTAAATTTATAACGTATATCTAATCCACGCATTTATTTATCGTCCTTCTGAAGTTAGTTTAGTTGGATTTTGATTTGGCCATTGACTTTTTTTTCTTTCAATTTCTCCATTTATTTAATATTAGGATAATGGTACTTTTATCGTAATTTTCTAAAATGATCTATTAGATAAGGAATGATTTAACTTATGCTTACTTAAGTAATGATTACTAATTCAAAAAAGTTATGTTTCTTCTTGATTTTAATTGTTTTTAACAAATAAAATATTAAATACACGTTCATATTTAATTTAAAAATTTGAATTTGAGCTAAGAATATAAAGAGCTTTATCCTAAAGAAAAATTTATATCAATATACCATGATGGTAAACCAAAATAAATAAAATGATACAATTTACTCTGAACCAATAAAACAAATTAAATTTAGTTATTCAAAATTATCCATACATAAAGCAAAAAATAAATTTCTTTAATTTAATTGATTTTATTATATAACAGGTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCAGTAAGTACCTATTTATTAGATTAAATAATGTATATATATATTTTTAAAAAATAATTATGTTGTGTTTTTAACTGGAATTAAAAAAATCATAATAATTTTTTCTAATTAATTTTATTTGTATACTATATAGGTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAGGTAAATATTTATTCGCATTCAATATTTTTATTAAATTAAATAATTTAATTTTATAATTAACAATTAAATTAAATATTATATCACTTAATCGTAATTAAATAAAAAAATAACTGTACGAAAGAAAACACGTCTTGCATTCGAGTTGTTTGTTGTAAACACAAAATATGAGTAACTTTTTTTTTTTTAAAACTCAAAATAAGATCACGATCCATTGACTAATATATGTCGCTATATATATAACTTATATAATGAAACAATTTATTTTATTATTGTAATATAAATAATCGAATAAATAATTTTGAGATTGGACAAATACTCCCAATTAATCAAATACAAAATAAAAATAATTCTATAATTATTTTTGAGATTATTATTTGTTTTTCCTCATATGACCCCTAATTCTCTTTTTTTTTGTTCTTCAAAAAGAAATTTAGCGTAGTAAAAAGAAGATATTATTTTAAAAATTTTCGTTTGAGGTTTAATATTTATTTTAAAGTCTGATGAATTTTATAAGCTTTTTTATTTTTTATTTTGTTGAAGGCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAGGTATCTCATTACTTACAATTAATTATAGTGTACTCATTCACAATTCATACAGTAATATTAGTAATTTTTGATATATCGTTGTTGTTGCAGGATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</genome_strand>
        <mrna_strand>TTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAAAAAAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTTCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCA..................................................................................................................................GTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAG..........................................................................................GATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337528" ref_strand="+" ref_description="SGN-U337528        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|5732018|gb|AAD48923.1| chorimate mutase [Lycopersicon esculentum](evalue: 6e-05, score=40.4)">
      <seq>aaagaaaagaaaaaaatggcttgtggtgatgatgataaattgtgtcttgattcaataagacagagtttaattagacaagaaaataccattatttttatccttattgaaataattcaacttaccaataaattcaactttatacttacaacatttacctcctctttccaattttttatgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="+" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="15090" stop="15871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15390" g_stop="15571" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="+" ref_id="SGN-U337528" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>182</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15390" e_stop="15571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAA-TCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTT</genome_strand>
        <mrna_strand>AAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGACAGAGTTTAATTAGACAAGAAAATACCATTATTTTTATCCTTATTGAAATAATTCAACTTACCAATAAATTCAACTTTATACTTACAACATTTACCTCCTCTTTCCAATTTTTTATGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326627" ref_strand="+" ref_description="SGN-U326627        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | 5'-3' exonuclease family protein, similar to DNA polymerase type I (Rhodothermus sp. 'ITI 518') gi:4090935:gb:AAC98908 ; contains Pfam profile PF02739: 5'-3' exonuclease, N-terminal resolvase-like domain | chr1:12552633-12554298 REVERSE | Aliases: F7P12.3, F7P12_3(evalue: 4e-07, score=51.6) genbank/nr: putative(evalue: 2e-53, score=211)">
      <seq>tggtccttttacaccttaaaacactatgtggcacagtacaattgtgatccgagatctgatttgagcctgaggtgcatactgggcgacgaggttgatggtgttcctggaatccagcatgttgttcctggttttggtcgaaagactgctttgaagcttttgaaaaagcacggtacactggagaatttacttaatgctgcttcagtaagatcagtgggcaggcagtatgcacaagatgcccttatcaagtacgctgattatctgcgcagaaattatgaagttctctctctgaagagggatgtcagtatccatattgaggagcaatggcttaatgagagggatgcgcgtaatgactcacttgttttatccaacttcgtcacttcgctggaagacagtaggaatcttaatttggaaaagagatcgcattccattggttgaaattgccagaagaaagcattttttgtgtaagttataatgtaagctctacaacctgaagaacaaagatcttgatgcttcagcagaagtatcaaactaaaccaatagacgattaccgaacttagccagaagatttgatcagatgaaccggactgaatcagaatatccaaattcacaatagaagcatacagtagaaaacttagctattattcctcttggacgaatcactaaggaagagacttctgaggtctaaaatgtacagtaagtttgagtttcttttagtagtgcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="+" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="21095" stop="24569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21395" g_stop="21464" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21465" i_stop="22704" i_length="1240">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22705" g_stop="22927" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="293" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22928" i_stop="23040" i_length="113">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23041" g_stop="23205" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="458" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23206" i_stop="23927" i_length="722">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23928" g_stop="24078" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="609" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24079" i_stop="24154" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24155" g_stop="24269" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="724" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="+" ref_id="SGN-U326627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21395" e_stop="21464"/>
          <exon e_start="22705" e_stop="22927"/>
          <exon e_start="23041" e_stop="23205"/>
          <exon e_start="23928" e_stop="24078"/>
          <exon e_start="24155" e_stop="24269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGAGTAAGTATGTCACACTCCTTTTAGGTGTGGTTTTATCTTAACTTAAGTTACTGGTTCATGTACTTATTGAAGCTAATAATATCTTATTCATAGCTGGAAGTTGAAAGTCGTTATTTTACTTCCTTGTAAGGCAGGGTTTGGGTGAGATTTAGAGAACTGTAGTTTTAAGAGATTCCCGTTTATATTAAAAGGTATATTATGGAGTAGTGAAATGAAGTGGTCCTGAATAGAGCACACCAAATATAGAGGATTCATATAACCAACCCCTGCTAGTTTGTGACTGACGTTTCACTGATTGGGATATGAACACTAAGAGAGGCGTAGTTAGGGAGTGGTTCTTTCCCGGAAGAGGGGTAAAATTGAAGGACGGTGTGGGAATTTAATCTTGGATAAGATATCTTTTTCTTCTAATTTTTACTACATCTTACTAAATATTTTTTCATACCAAATATTTTTAAAAGTTCTTCCATTGATATGAACATACCTTCAATACATCTGTAACTCTTTATTCTTCTCTTTTATCGTACCGGATTCGGTCAACCATTTTTGGGTACTTTGACCAAAATTGACAGAGAAATTCAGGACAACTACGATGATTTCTGTAATCAAAACAAAAGCTAACGTGAAATTGAAAAAAATGAAGTACCCTGTATACATAAATTTCTATGTCAGTCTTTTCCTTATACCACCTTCTGTAAATCTACTCTTGATCAATATTCTCTCCTCAGAATACCCTTTTAATTTACCTCATAATGTTCTCATAATTTAGACATGCAACTCCATTCTTAGACATTTGAATTATTTTTAGCCGAATCCCCGCACCCCTATCGGTACCCTTGAATCTTAAAATGTAGATCATGAAGGATCTGACCTCTAAATCTGCACCTGTATTTGACACCCGCACCCAAGTCCGAGCACCTTAGGTCAAGAACATCATGAAGACTACCTTTGCATTGTGAAGAAAGTGCAGGCGGCACTTGGTAAAATGAAGAACAAAAGCCTCTTTTGTTGCCATATAGCTTCATGTGTTTCATTTTATCCTGTTCTTCTTATAAGGCTTTAGCATTTTTCCATGTCTGCACTTCTGGGCTTTAGCAATATAGGCTAGCTACCGTAGGGGATGAGTGGATTTTTGATGCTTCAGTGTCGATGCTGTTAGAATTATCTAATCACCAGTTTTGTTCTCGAGTGTCTGCTGTTATTATGTTGGCTGCTAACTTTTTGTGGTTTTCTGGATAAGGGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAGGTAGCATTTTCATTTTTTCTTTCTTCTCTGTAACAGCAAAAGAGTTATTCAGTATCCAAGCCCCTTTCATAGCTTCCTACTTCTAACTATTGTAAATGGAATGACACTAAAAGGGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTTGTGAGTTTCTTCTTTACTTCTTTATTTGTTCCATTTTTATTCTTCAGCTTTGACGGAGTGGCATATTAAGTATCTTCTGGATAGCAAAGACGGTAAAATGTCAAAAGGTATAGTGAAAGGTCTTTTAGCTTGTCTACATTTTACGGTGACCATATATCTAGCCTATCTTACCAAAAGAAGACATTACCTCTAGCCCATATTTCAATATATCACACATCAATCCAGAGTTGATTTTGCTTTGGGTTGAAATGACAATATGAGCAACAAAAGATTCTGCTCCAGACCCTTTTTTTTTTGAAGTGGCTAGTGTTTTTGATGTTAAAATCAGAGCACTAAGGAGGTGCTGTAGCTACATACAAAAAGATTACAAGTGAATATTAAAAAAGTTAACAGGATGTCTCGAGTATCATTCTAATCTAACACCAACAAGTTATCAACATAATACAATCTTGTTTCCAGCTTTAGGTATGTTTTTCTACAAATTTAGTATTTATGTTATAATTTCTTTTACATTCTGAATGATGTCGGAGAGCTTGTATGATGTTGAGTGAATTAAAATAAATTAACTAGAAAGGCCTAATTACAGTTACCACATTGAAAAGATGATTTTGTCATGAAGAAGAAAACAATGTAAAAACATGGACACCCTGCAAAGGAACAGAAAATGATATGAATTTCATGTTATTCAAATTCTCAAGTGCTTGATGTTCTGTTTTATGCAGTGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACAGTGAGTATAGACTAATACTCTCTATTTCATGTCTATTTGTTTCAATAACACTAATTCATTTTTCTTCATGTATCAGATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTTTAGTAGTGCCTCT</genome_strand>
        <mrna_strand>TGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAG.................................................................................................................GGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACA............................................................................ATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTTTAGTAGTGCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319107" ref_strand="+" ref_description="SGN-U319107        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; ESTs gb:T43026, gb:R64902, gb:Z18169 and gb:N37374 come from this gene | chr1:8028181-8029956 REVERSE | Aliases: None(evalue: 2e-79, score=293) genbank/nr: tetratricopeptide(evalue: 2e-78, score=296)">
      <seq>tcctgatagagttggttgagataaactttattatcctcaagaagcaaaaaacagaagaaaattttaccaagaatgattcatcttatgcccctaaaaattcaatcttgatgcttcccagtttactcttcagtaatttgaatcataaaaatataccctttttgtagatagaagaaaagaaatgctaatgatacagtccaccatttcacttcctcttcaaaaatctgttcttgttccagctaaaattgcaacaagtgggagtaaaaatggttgttttcttgatttaaatggtcggtgtggttcaaaatcagcttcttatcactttccaagaagacccattaagggaaattcaattcagctgaagatttatgccaggaaatcagaatcactcccaattttgctttcagagaaagttgatgaattgccagagatgttgctgaatggcggagatattaccattagtagtggggagattctttctctatcagctttctcatgtggatctatcttctggttgacatctgggcaagtggcattagcaagtgaaggtgtcagagtaaatatggtttatgaggtcggggaattatttgaactgggaatccagcttacttacctgcttttactactagcattgcttggggttggaagtttctttgtgattcggcaagtccttgtccgcagagagcttgatctttctgccaaagaattgcaagagcaagttagaagtggtgatgccagtgccacagagctttttgaacttggagctgtgatgttgaggagaaaattctacccagctgcaaccaaataccttcttcaggcagtagaaaagtgggatggagatgatcaggatcttgcccaagtttacaatgcccttggtgtcagttatgtacttgatgggaaaattgacaaaggaattgctcagtttgaaaatgctgtaaaagttcaacctggttatgtcacggcatggaacaaccttggcgatgcatatgagaaaaccaaagacttaacatctgctctaaatgcatttgaagaggtacttctttttgatcctaacaacaaaatagctcgtcctaggcgcgatgcattgaaggacaaagtaacaatgtataaaggagtatcagtgaaatctaagaagagttgatatagctagcccattagttcttttacacacttgtgctgattatctttttgaggagctctttttgttctctttttccgctttctcctacacaagtggaattcgttgtcatggccatgttgaagttttggatgttccataatagaagttgtttgaactttctgttttaagggaaatgaaatgaacagtgtctattctcttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="+" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="37344" stop="42056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37644" g_stop="37998" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37999" i_stop="38166" i_length="168">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38167" g_stop="38227" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="416" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38228" i_stop="39477" i_length="1250">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39478" g_stop="39770" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="709" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39771" i_stop="40168" i_length="398">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40169" g_stop="40315" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="856" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40316" i_stop="41272" i_length="957">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41273" g_stop="41768" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="1350" r_length="494" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="+" ref_id="SGN-U319107" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1352</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37644" e_stop="37998"/>
          <exon e_start="38167" e_stop="38227"/>
          <exon e_start="39478" e_stop="39770"/>
          <exon e_start="40169" e_stop="40315"/>
          <exon e_start="41273" e_stop="41768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTTCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAGGTAATTCCCCTAATTTTTGGGTTGCTGTGTTTTCTTGATATGCTTGTAGATGATTATTTGAGTGACTGCTGTCGATTACTCTGTTGTTGAGAGCTCTTTAGTGATGCGTTTGTTGATTTGTTTTATCTCTTTTTGGGTATTCTTAAGTTTTGTCTATATTGTTTACAGCTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATGGTACTTCTTTTTCTTCTTTAATGATTAACTTTGAAAAATAACTCTAATTGATGCTACATGGGCAAAATTTTCCTGATGGCGGTCAGTCCTGAACGAATTCCCTCTCGTAGCTAGGGCCTTGCTAGTCCTTGTAAAACAAAAATAGGGCAGCCTGGTGCACTAAGCTCCCATGATGCGTGGGGTGTGGGGAAGGGATGGACCACAAGGGTCTATTGTCCTTCATATCTATAAGAGACTATTTTCACAGGTCGAAATCCGTGACCTTGTTGTTACATAGAAGCAACTTTACTAGTTCTCTCTATCCGTAATCCATATTATAAAATTATCTAATGTAACCTTTACAGGTTTCAAGGATTAATTCATTTAACTAGACAATTTTTATCTTTGATGGGATGTTTTCTTTATTTAACTAGACAACTGGTATTTTACTTATTGATATCATCAACTAGTAGTGTTTTCTTCTCTTATTGATTCTATAATACTCAAGTCAAACTAAAATCTTCATGTCTAGTGAAAATATGACACATTGGGTAGGATGGATCATCTTATTTGAAGTGCTAGTTCTAGATCCCTGCATTGGTATAGTCGAGACTGAGAAATGTCGATTTTCGTACACATACTTTTTTTTTTCTTTAATTGGAATGTTTATATATTGTTTTTAGTTTTGTGGCAGTCTATCAAATGTTTGGAAACAATTATCATTTTCCTATAGATTTACCAAAAAGAAAAAAAAATATCATCTTCCCTTAGAAAGGTATGAAGACCTACTTAACTCCTAGCTTGAGAAAGATCAAGAGATATTTGAGATTGGTAGGAGGGATGATTTAGCTTCTAATTATACTTATGATTACATTTTTAACTCCACTAATGCTTTTCGATTGATCTGTTGGTTTTTGATAAAAAAAACACTGAAAAAGCACCCTCATCCTCGGAATGGAAAGCAAACTGAAATTTCAATCAACTTCTTATGACCTGTGACACAAATCCTTACCTCGGACTTGTAAATATATTCACGACTGTGTATAATGTTGAGATTAATTTCCAAAAGGACATCACCTTGTTCTTCTATGAACAAGTAATAAATCATTCCAACAGAAGTTTGGAACTTCTTGTTTTGTATTAAATCCTCTATACGCATACAGAGGAAGATTGCCTAATATAATTGCTATGAACCATAAATATGATAATAATGCTTTGTTGCACAGATTTTGCATGAACTAAAAGGTCCCGTCATTGGCTTCCCATTGCAGAATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAAGTATGTGACTAAATGTCTTTTCTCGTTGTGTATAAATGCTTTGCCATTTATTTGAAACATATATAGTATGCATCTGTATGGTTTAGATCTACAAATGCAAACTTCTTTTGAAGATATATATATATATCATTGTATTCTCCTGAAGGTAGAGCAGGAGAAGAATGCTTTATAAAGAGAAAAAAAGAAAGAAGATTGTGTTTAAATCTTGACTTGGAGATATCAATATGAATTATTCTATTTGTTTCCCTCAGACAACAATAGCTGACTTTTAATCTATAATTCCATATCACATTTGTACACGTTTATATCAGTTGCAAGAACAACTTGCGCATAGATGCGAGAATGCAACTCTCATTCTCTACCTCTGAACACACTGTTTTATTTGTCACACAACACAGGAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAAGTATGAACTACTCTTCAACAATTTCTGTTCCATTTATCATTTATAATTTTATATAAATGATAAAGGACCTTCTCTATAGCAATTCTCATTTTATATATAAATTTTTGATACAAATGAATGCACATTTATCCAGATGAACATGTGAAGAATCTCTTTTACCCTGGATCAAACTTTTACTTACTGCCAAAAAAAAAAAAAAGTTCAAAAGTCTGCTAGAAACTGCTGAAATTCCCAGCTCACAAATTATTTCTCTATCAAAATCTAGAAAATTTGTATAGAAAATGGACCTCAAAAGCTAGTTCATGAAGTGAAGGTTGTTCAAGATCATATAAGTAGACAATAACCCATGGTTGTGTATTTGGAGCATCGACATAACGTGGGATCCCAACATTGGGCCTGCATCACTGGGCCAAAAGGACAAAATAATCTTCTTCTTTTTGTTATGAAGATGTTGTATTAGAAGGACAGAATAACTCCTGGATAACTCCTGAGGAAATCAGGATTTTTCCTTAGAAGAAATGAGGTTGACTGGTTGTGGTAGAAATAAGCTTGATGTTCCAGTCTTATTCTTTTTATTTTTTGGTTGATGGAGCCATGAAGATTAGGGGACTGGTCATGTTGTCCAGGATTCCGTAATATGCATCACGGAACTCCAAATACTTCGGAGCTGATTGAACATCTAACTAGGAAGCTTGTATCATGGCATGGTCTGAGAATGTTAAGCAAATCTCTGTTAAATGAAATTTAACCAATACAGAAAACTATGACTTCAAAAGGATGTATTTCTAAAGAATCGTTTTAGACAGTTATAGAATTTTTACTCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCAGCCAATACTTTTTTTGCTGTTGCGTACCAACTCTTTTCAGGTATCTGAGTTATGTATTCTGCTCCCTTCCCTTAAAATTTTGTGCATCTTTACAGGTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTTGGTGTAAATGAAATGAACAGTGTCTATTCTACTTTATTTGCATAGAAT</genome_strand>
        <mrna_strand>TCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTTCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAG........................................................................................................................................................................CTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTAAG-GGAAATGAAATGAACAGTGTCTATTCT-CTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336732" ref_strand="+" ref_description="SGN-U336732        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, contains Pfam profile PF00515 TPR Domain; ESTs gb:T43026, gb:R64902, gb:Z18169 and gb:N37374 come from this gene | chr1:8028181-8029956 REVERSE | Aliases: None(evalue: 4e-16, score=82.4) genbank/nr: gi|30687988|ref|NP_850950.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana](evalue: 3e-14, score=82.4)">
      <seq>aacagaaagctcaaacaacttctattatggaacatccaaaacttcaacatggccatgacaacgaattccacttgtgtaggagaaagcggaaaaagagaacaaaaagagctcctcaaaaagataatcagcacaagtgtgtaaaagaactaatgggctagctatatcaactcttcttagatttcactgatactcgtttatacattgttactttgtccttcaatgcatcgcgcctaggacgagctattttgttgttaggatcaaaaagaagtacctcttcaaatgcatttagagcagatgctaaggctttggtttactcatatgcatcaccatggttgtagcatgccgggacttaaccaggttgaacttcttacagcattgacaaactgagcaattactttgtcaaatgtcccatcaagtacataactgacaccaagggcattggaaacttgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0034I10-afc4q/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0034I10.2" temp_strand="-" temp_description="C11HBa0034I10.2  AC171733.2 htgs_phase:3 submitted_to_sgn_as:Contig16 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="42017" stop="40970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41717" g_stop="41266" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0034I10.2" gen_strand="-" ref_id="SGN-U336732" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0034I10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41717" e_stop="41266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAAGTTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCCTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGTTAAGTCTTTGGTTTTCTCATATGCATCGCCAAGGTTGTTCCATGCCGTGACATAACCAGGTTGAACTT-TTACAGCATTTTCAAACTGAGCAATTCCTTTGTCAATTTTCCCATCAAGTACATAACTGACACCAAGGGCATTGTAAACCTGTAAA</genome_strand>
        <mrna_strand>AACAGAAAGCTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCGTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGCTAAGGCTTTGGTTTACTCATATGCATCACCATGGTTGTAGCATGCCGGGACTTAACCAGGTTGAACTTCTTACAGCATTGACAAACTGAGCAATTACTTTGTCAAATGTCCCATCAAGTACATAACTGACACCAAGGGCATTGGAAACTTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6717" PGL_stop="7270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6717" e_stop="7270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="6717" e_stop="7270" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6717" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCGTCCCGTCTAGTACTAGGGAGGTGACTCCTCCACCGACTGAAGAAGTAGTAAGAGAGGGTGAGGAAGGGGAAACTGAACAAGTACAGAATGAGGGATTGCCTCCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGTGGGTTATCTGATCAAGGTCAAACGCCTCCAGTATTTTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGTCTGACTGCAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTACGATTTTCTGGTTGACTGTTATGAGCTACTACACAAGATGGATATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGAGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> A  R  P  V  *  Y  *  G  G  D  S  S  T  D  *  R  S  S  K  R  G  *  G  R  G  N  *  T  S  T  E  *  G  I  A  S  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  W  V  I  *  S  R  S  N  A  S  S  I  F  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  S  D  C  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  R  F  S  G  *  L  L  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  E  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  V  P  S  S  T  R  E  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  T  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  A  G  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  Y  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   P  S  R  L  V  L  G  R  *  L  L  H  R  L  K  K  *  *  E  R  V  R  K  G  K  L  N  K  Y  R  M  R  D  C  L  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  V  G  Y  L  I  K  V  K  R  L  Q  Y  F  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  I  *  *  N  G  L  V  L  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6718" stop="7269"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVPSSTREVTPPPTEEVVREGEEGETEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATVAPRMDASLEIGTFPRLTAGPVMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCYELLHKMDIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8368" PGL_stop="8038"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8368" e_stop="8038"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="8368" e_stop="8038" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8368" stop="8038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTCGCTAACGTCACTGTTTTAGCATTACAATCCAAAATCACAAAATTCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATGAGTGTTACTCCCTACAAAAGTCACCAAACAAGACCTATACACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGTAAATCAAGACCATTAGCAAATGCGGAAGATACATATGAAAATGTAGAGCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</gDNA_template>
            <first_frame> D  L  S  Q  A  S  L  T  S  L  F  *  H  Y  N  P  K  S  Q  N  S  E  K  A  K  S  Y  P  E  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  E  C  Y  S  L  Q  K  S  P  N  K  T  Y  T  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  V  I  H  N  V  N  Q  D  H  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  R  *  R  H  C  F  S  I  T  I  Q  N  H  K  I  R  R  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  M  S  V  T  P  Y  K  S  H  Q  T  R  P  I  H  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  V  K  *  F  T  M  *  I  K  T  I  S  K  C  G  R  Y  I  *  K  C  R  A  R  V  K  Q  Y  K  S  H  A  I  T  N  R </second_frame>
            <third_frame>   S  V  P  G  F  A  N  V  T  V  L  A  L  Q  S  K  I  T  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  C  K  S  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  K  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8237" stop="8040"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTKQDLYTFSTITDSPTGVETRIGMSSNSQCKSRPLANAEDTYENVEPGSNNTKAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10840" PGL_stop="10664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10840" e_stop="10664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="10840" e_stop="10664" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10840" stop="10664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATGTCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGACCACCAAATTCTATCACACAAGCACGAAGTATATCCTCCAACACTTGAATCGTTCGCTCAGATTGACCACCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  M  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  Q  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  P </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  C  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  I  L  S  H  K  H  E  V  Y  P  P  T  L  E  S  F  A  Q  I  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  V  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  T  T  K  F  Y  H  T  S  T  K  Y  I  L  Q  H  L  N  R  S  L  R  L  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0034I10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15328" PGL_stop="18811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15328" e_stop="15614"/>
            <exon e_start="17338" e_stop="17424"/>
            <exon e_start="17555" e_stop="17701"/>
            <exon e_start="18242" e_stop="18334"/>
            <exon e_start="18425" e_stop="18811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="15328" e_stop="15614" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15615" i_stop="17337" i_length="1723"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17338" e_stop="17424" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17425" i_stop="17554" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17555" e_stop="17701" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17702" i_stop="18241" i_length="540"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18242" e_stop="18334" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18335" i_stop="18424" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18425" e_stop="18811" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15328" stop="15614"/>
              <exon start="17338" stop="17424"/>
              <exon start="17555" stop="17701"/>
              <exon start="18242" stop="18334"/>
              <exon start="18425" stop="18811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15390" stop="15571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCCATCCTCTCCCCACAAAAAATCTTTTTCACAATTTTGTCAATCAAAAAAAAAAAAAAGAAAAGAAAAAAATGGCTTGTGGTGATGATGATAAATTGTGTCTTGATTCAATAAGAAAGAGTTTAATTAGACAAGAAGATACCATTATTTTCAACCTTATTGAAAGAATCAAATTCCCAATAAATCCAACTTTATACAAACAACAATTACCTCCTCCTTCCAATTTTTCAGGATCCTTATTTCAATACTTGTTTCAAGAAACAGAATCCCTTCAATCCAAG : GTTGGTAGATATTTGGCCCCAGAGGAAAATCCTTTCTTCCCAGATAATTTGTCTGACTCAATCATACCACTTACCAAATGCACACCA : GTTTTGCATCCTGCAGCAGAATCAGTAAATGTAAATGAGAAAATATTGGATATTTATATAAATCAGATGCTTCCACTATTTTGTACTGAGGTTAATGATGATGCAAACTTTGCAACTACTGCTGCTTGTGACATTCAGCTCTTGCAG : GCACTATCTAGAAGGATTCACTATGGAAAATTTGTTGCTGAAGTTAAATTTAGAGATAGTATTGATGAATATAAACCATTTATTCTTGCTCAG : GATAGAGATGCTTTAATGAAGTTATTAACATTTGAAGCGGTTGAAGAGATGGTGAAGAAGAGAGTAGCGAAGAAAGCTAAAGTGTTTGGTCAAGAAGTGAGCTTAAACGATAACGCTGAAGAAGTGAAGGGCAAAATTGATCCATTGTTAGTTTCACGTTTATATGATGAATGGGTTATGCCTTTGACTAAACTTGTCGAAGTTGAATACCTCCTGCGTCGTCTTGATTAATTGAGCTTATTATTATTATTGTAATGATTTTCGTCACCATTATTATCATTTGTTATTGTTATCGATCGACATTTATGCAGATGAAAATGACGATTCATGACATTTGTGAATTGCCAAAAAGTTGAGCTAATTGTCATTCTTTAGTTATGGATATGA</gDNA_template>
            <first_frame> F  F  S  I  L  S  P  Q  K  I  F  F  T  I  L  S  I  K  K  K  K  K  K  R  K  K  W  L  V  V  M  M  I  N  C  V  L  I  Q  *  E  R  V  *  L  D  K  K  I  P  L  F  S  T  L  L  K  E  S  N  S  Q  *  I  Q  L  Y  T  N  N  N  Y  L  L  L  P  I  F  Q  D  P  Y  F  N  T  C  F  K  K  Q  N  P  F  N  P  R :   L  V  D  I  W  P  Q  R  K  I  L  S  S  Q  I  I  C  L  T  Q  S  Y  H  L  P  N  A  H  Q :   F  C  I  L  Q  Q  N  Q  *  M  *  M  R  K  Y  W  I  F  I  *  I  R  C  F  H  Y  F  V  L  R  L  M  M  M  Q  T  L  Q  L  L  L  L  V  T  F  S  S  C  R :   H  Y  L  E  G  F  T  M  E  N  L  L  L  K  L  N  L  E  I  V  L  M  N  I  N  H  L  F  L  L  R :   I  E  M  L  *  *  S  Y  *  H  L  K  R  L  K  R  W  *  R  R  E  *  R  R  K  L  K  C  L  V  K  K  *  A  *  T  I  T  L  K  K  *  R  A  K  L  I  H  C  *  F  H  V  Y  M  M  N  G  L  C  L  *  L  N  L  S  K  L  N  T  S  C  V  V  L  I  N  *  A  Y  Y  Y  Y  C  N  D  F  R  H  H  Y  Y  H  L  L  L  L  S  I  D  I  Y  A  D  E  N  D  D  S  *  H  L  *  I  A  K  K  L  S  *  L  S  F  F  S  Y  G  Y   </first_frame>
            <second_frame>  F  F  P  S  S  P  H  K  K  S  F  S  Q  F  C  Q  S  K  K  K  K  R  K  E  K  N  G  L  W  *  *  *  *  I  V  S  *  F  N  K  K  E  F  N  *  T  R  R  Y  H  Y  F  Q  P  Y  *  K  N  Q  I  P  N  K  S  N  F  I  Q  T  T  I  T  S  S  F  Q  F  F  R  I  L  I  S  I  L  V  S  R  N  R  I  P  S  I  Q   : G  W  *  I  F  G  P  R  G  K  S  F  L  P  R  *  F  V  *  L  N  H  T  T  Y  Q  M  H  T   : S  F  A  S  C  S  R  I  S  K  C  K  *  E  N  I  G  Y  L  Y  K  S  D  A  S  T  I  L  Y  *  G  *  *  *  C  K  L  C  N  Y  C  C  L  *  H  S  A  L  A   : G  T  I  *  K  D  S  L  W  K  I  C  C  *  S  *  I  *  R  *  Y  *  *  I  *  T  I  Y  S  C  S   : G  *  R  C  F  N  E  V  I  N  I  *  S  G  *  R  D  G  E  E  E  S  S  E  E  S  *  S  V  W  S  R  S  E  L  K  R  *  R  *  R  S  E  G  Q  N  *  S  I  V  S  F  T  F  I  *  *  M  G  Y  A  F  D  *  T  C  R  S  *  I  P  P  A  S  S  *  L  I  E  L  I  I  I  I  V  M  I  F  V  T  I  I  I  I  C  Y  C  Y  R  S  T  F  M  Q  M  K  M  T  I  H  D  I  C  E  L  P  K  S  *  A  N  C  H  S  L  V  M  D  M  </second_frame>
            <third_frame>   F  F  H  P  L  P  T  K  N  L  F  H  N  F  V  N  Q  K  K  K  K  E  K  K  K  M  A  C  G  D  D  D  K  L  C  L  D  S  I  R  K  S  L  I  R  Q  E  D  T  I  I  F  N  L  I  E  R  I  K  F  P  I  N  P  T  L  Y  K  Q  Q  L  P  P  P  S  N  F  S  G  S  L  F  Q  Y  L  F  Q  E  T  E  S  L  Q  S  K  :  V  G  R  Y  L  A  P  E  E  N  P  F  F  P  D  N  L  S  D  S  I  I  P  L  T  K  C  T  P  :  V  L  H  P  A  A  E  S  V  N  V  N  E  K  I  L  D  I  Y  I  N  Q  M  L  P  L  F  C  T  E  V  N  D  D  A  N  F  A  T  T  A  A  C  D  I  Q  L  L  Q  :  A  L  S  R  R  I  H  Y  G  K  F  V  A  E  V  K  F  R  D  S  I  D  E  Y  K  P  F  I  L  A  Q  :  D  R  D  A  L  M  K  L  L  T  F  E  A  V  E  E  M  V  K  K  R  V  A  K  K  A  K  V  F  G  Q  E  V  S  L  N  D  N  A  E  E  V  K  G  K  I  D  P  L  L  V  S  R  L  Y  D  E  W  V  M  P  L  T  K  L  V  E  V  E  Y  L  L  R  R  L  D  *  L  S  L  L  L  L  L  *  *  F  S  S  P  L  L  S  F  V  I  V  I  D  R  H  L  C  R  *  K  *  R  F  M  T  F  V  N  C  Q  K  V  E  L  I  V  I  L  *  L  W  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15330" stop="15614"/>
                    <exon start="17338" stop="17424"/>
                    <exon start="17555" stop="17701"/>
                    <exon start="18242" stop="18334"/>
                    <exon start="18425" stop="18655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFHPLPTKNLFHNFVNQKKKKEKKKMACGDDDKLCLDSIRKSLIRQEDTIIFNLIERIKFPINPTLYKQQLPPPSNFSGSLFQYLFQETESLQSKVGRYLAPEENPFFPDNLSDSIIPLTKCTPVLHPAAESVNVNEKILDIYINQMLPLFCTEVNDDANFATTAACDIQLLQALSRRIHYGKFVAEVKFRDSIDEYKPFILAQDRDALMKLLTFEAVEEMVKKRVAKKAKVFGQEVSLNDNAEEVKGKIDPLLVSRLYDEWVMPLTKLVEVEYLLRRLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21395" PGL_stop="24269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21395" e_stop="21464"/>
            <exon e_start="22705" e_stop="22927"/>
            <exon e_start="23041" e_stop="23205"/>
            <exon e_start="23928" e_stop="24078"/>
            <exon e_start="24155" e_stop="24269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.787" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21395" e_stop="21464" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21465" i_stop="22704" i_length="1240"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22705" e_stop="22927" e_length="223"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.787">
            <gDNA_intron_boundary i_start="22928" i_stop="23040" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23041" e_stop="23205" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.943">
            <gDNA_intron_boundary i_start="23206" i_stop="23927" i_length="722"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23928" e_stop="24078" e_length="151"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24079" i_stop="24154" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24155" e_stop="24269" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21395" stop="21464"/>
              <exon start="22705" stop="22927"/>
              <exon start="23041" stop="23205"/>
              <exon start="23928" stop="24078"/>
              <exon start="24155" stop="24269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTCCTTTTACACCTTAAAACACTATGTGGCACAGTACAATTGTGATCCGAGATCTGATTTGAGCCTGA : GGTGCATACTGGGCGACGAGGTTGATGGTGTTCCTGGAATCCAGCATGTTGTTCCTGGTTTTGGTCGAAAGACTGCTTTGAAGCTTTTGAAAAAGCACGGTACACTGGAGAATTTACTTAATGCTGCTTCAGTAAGATCAGTGGGCAGGCAGTATGCACAAGATGCCCTTATCAAGTACGCTGATTATCTGCGCAGAAATTATGAAGTTCTCTCTCTGAAGAG : GGATGTCAGTATCCATATTGAGGAGCAATGGCTTAATGAGAGGGATGCGCGTAATGACTCACTTGTTTTATCCAACTTCGTCACTTCGCTGGAAGACAGTAGGAATCTTAATTTGGAAAAGAGATCGCATTCCATTGGTTGAAATTGCCAGAAGAAAGCATTTTT : TGTGTAAGTTATAATGTAAGCTCTACAACCTGAAGAACAAAGATCTTGATGCTTCAGCAGAAGTATCAAACTAAACCAATAGACGATTACCGAACTTAGCCAGAAGATTTGATCAGATGAACCGGACTGAATCAGAATATCCAAATTCACA : ATAGAAGCATACAGTAGAAAACTTAGCTATTATTCCTCTTGGACGAATCACTAAGGAAGAGACTTCTGAGGTCTAAAATGTACAGTAAGTTTGAGTTTCTTTTAGTAGTGCCTCT</gDNA_template>
            <first_frame> W  S  F  Y  T  L  K  H  Y  V  A  Q  Y  N  C  D  P  R  S  D  L  S  L   : R  C  I  L  G  D  E  V  D  G  V  P  G  I  Q  H  V  V  P  G  F  G  R  K  T  A  L  K  L  L  K  K  H  G  T  L  E  N  L  L  N  A  A  S  V  R  S  V  G  R  Q  Y  A  Q  D  A  L  I  K  Y  A  D  Y  L  R  R  N  Y  E  V  L  S  L  K  R :   D  V  S  I  H  I  E  E  Q  W  L  N  E  R  D  A  R  N  D  S  L  V  L  S  N  F  V  T  S  L  E  D  S  R  N  L  N  L  E  K  R  S  H  S  I  G  *  N  C  Q  K  K  A  F  F :   V  *  V  I  M  *  A  L  Q  P  E  E  Q  R  S  *  C  F  S  R  S  I  K  L  N  Q  *  T  I  T  E  L  S  Q  K  I  *  S  D  E  P  D  *  I  R  I  S  K  F  T  :  I  E  A  Y  S  R  K  L  S  Y  Y  S  S  W  T  N  H  *  G  R  D  F  *  G  L  K  C  T  V  S  L  S  F  F  *  *  C  L  </first_frame>
            <second_frame>  G  P  F  T  P  *  N  T  M  W  H  S  T  I  V  I  R  D  L  I  *  A  *  :  G  A  Y  W  A  T  R  L  M  V  F  L  E  S  S  M  L  F  L  V  L  V  E  R  L  L  *  S  F  *  K  S  T  V  H  W  R  I  Y  L  M  L  L  Q  *  D  Q  W  A  G  S  M  H  K  M  P  L  S  S  T  L  I  I  C  A  E  I  M  K  F  S  L  *  R   : G  M  S  V  S  I  L  R  S  N  G  L  M  R  G  M  R  V  M  T  H  L  F  Y  P  T  S  S  L  R  W  K  T  V  G  I  L  I  W  K  R  D  R  I  P  L  V  E  I  A  R  R  K  H  F   : L  C  K  L  *  C  K  L  Y  N  L  K  N  K  D  L  D  A  S  A  E  V  S  N  *  T  N  R  R  L  P  N  L  A  R  R  F  D  Q  M  N  R  T  E  S  E  Y  P  N  S  Q :   *  K  H  T  V  E  N  L  A  I  I  P  L  G  R  I  T  K  E  E  T  S  E  V  *  N  V  Q  *  V  *  V  S  F  S  S  A  S </second_frame>
            <third_frame>   V  L  L  H  L  K  T  L  C  G  T  V  Q  L  *  S  E  I  *  F  E  P  E :   V  H  T  G  R  R  G  *  W  C  S  W  N  P  A  C  C  S  W  F  W  S  K  D  C  F  E  A  F  E  K  A  R  Y  T  G  E  F  T  *  C  C  F  S  K  I  S  G  Q  A  V  C  T  R  C  P  Y  Q  V  R  *  L  S  A  Q  K  L  *  S  S  L  S  E  E  :  G  C  Q  Y  P  Y  *  G  A  M  A  *  *  E  G  C  A  *  *  L  T  C  F  I  Q  L  R  H  F  A  G  R  Q  *  E  S  *  F  G  K  E  I  A  F  H  W  L  K  L  P  E  E  S  I  F  :  C  V  S  Y  N  V  S  S  T  T  *  R  T  K  I  L  M  L  Q  Q  K  Y  Q  T  K  P  I  D  D  Y  R  T  *  P  E  D  L  I  R  *  T  G  L  N  Q  N  I  Q  I  H   : N  R  S  I  Q  *  K  T  *  L  L  F  L  L  D  E  S  L  R  K  R  L  L  R  S  K  M  Y  S  K  F  E  F  L  L  V  V  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21395" stop="21464"/>
                    <exon start="22705" stop="22927"/>
                    <exon start="23041" stop="23182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSFYTLKHYVAQYNCDPRSDLSLRCILGDEVDGVPGIQHVVPGFGRKTALKLLKKHGTLENLLNAASVRSVGRQYAQDALIKYADYLRRNYEVLSLKRDVSIHIEEQWLNERDARNDSLVLSNFVTSLEDSRNLNLEKRSHSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37644" PGL_stop="41768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37644" e_stop="37998"/>
            <exon e_start="38167" e_stop="38227"/>
            <exon e_start="39478" e_stop="39770"/>
            <exon e_start="40169" e_stop="40315"/>
            <exon e_start="41273" e_stop="41768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37644" e_stop="37998" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="37999" i_stop="38166" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38167" e_stop="38227" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.853">
            <gDNA_intron_boundary i_start="38228" i_stop="39477" i_length="1250"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39478" e_stop="39770" e_length="293"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="39771" i_stop="40168" i_length="398"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40169" e_stop="40315" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40316" i_stop="41272" i_length="957"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="41273" e_stop="41768" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37644" stop="37998"/>
              <exon start="38167" stop="38227"/>
              <exon start="39478" stop="39770"/>
              <exon start="40169" stop="40315"/>
              <exon start="41273" stop="41768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTGATAGAGTTGGTTGAGATAAACTTTATTATCCTCAAGAAGCAAAAAACAGAAGAAAATTTTACCAAGAATGATTCATCTTATGCCCCTAAAAATTCAATCTTGATGCTTCCCAGTTTACTCTTCAGTAATTTGAATCATAAAAATATACCCTTTTTGTAGATAGAAGAAAAGAAATGCTAATGATACAGTCCACCATTTCACTTCCTCTTCAAAAATCTGTTCTTGTTCCAGCTAAAATTGCAACAAGTGGGAGTAAAAATGGTTGTTTTCTTGATTTAAATGGTCGGTGTGGTTCAAAATCAGCTTCTTATCACTTTCCAAGAAGACCCATTAAGGGAAATTCAATTCAG : CTGAAGATTTATGCCAGGAAATCAGAATCACTCCCAATTTTGCTTTCAGAGAAAGTTGATG : AATTGCCAGAGATGTTGCTGAATGGCGGAGATATTACCATTAGTAGTGGGGAGATTCTTTCTCTATCAGCTTTCTCATGTGGATCTATCTTCTGGTTGACATCTGGGCAAGTGGCATTAGCAAGTGAAGGTGTCAGAGTAAATATGGTTTATGAGGTCGGGGAATTATTTGAACTGGGAATCCAGCTTACTTACCTGCTTTTACTACTAGCATTGCTTGGGGTTGGAAGTTTCTTTGTGATTCGGCAAGTCCTTGTCCGCAGAGAGCTTGATCTTTCTGCCAAAGAATTGCAA : GAGCAAGTTAGAAGTGGTGATGCCAGTGCCACAGAGCTTTTTGAACTTGGAGCTGTGATGTTGAGGAGAAAATTCTACCCAGCTGCAACCAAATACCTTCTTCAGGCAGTAGAAAAGTGGGATGGAGATGATCAGGATCTTGCCCAA : GTTTACAATGCCCTTGGTGTCAGTTATGTACTTGATGGGAAAATTGACAAAGGAATTGCTCAGTTTGAAAATGCTGTAAAAGTTCAACCTGGTTATGTCACGGCATGGAACAACCTTGGCGATGCATATGAGAAAACCAAAGACTTAACATCTGCTCTAAATGCATTTGAAGAGGTACTTCTTTTTGATCCTAACAACAAAATAGCTCGTCCTAGGCGCGATGCATTGAAGGACAAAGTAACAATGTATAAAGGAGTATCAGTGAAATCTAAGAAGAGTTGATATAGCTAGCCCATTAGTTCTTTTACACACTTGTGCTGATTATCTTTTTGAGGAGCTCTTTTTGTTCTCTTTTTCCGCTTTCTCCTACACAAGTGGAATTCGTTGTCATGGCCATGTTGAAGTTTTGGATGTTCCATAATAGAAGTTGTTTGAACTTTCTGTTTTTGGTGTAAATGAAATGAACAGTGTCTATTCTACTTTATTTGCATAGAAT</gDNA_template>
            <first_frame> S  *  *  S  W  L  R  *  T  L  L  S  S  R  S  K  K  Q  K  K  I  L  P  R  M  I  H  L  M  P  L  K  I  Q  S  *  C  F  P  V  Y  S  S  V  I  *  I  I  K  I  Y  P  F  C  R  *  K  K  R  N  A  N  D  T  V  H  H  F  T  S  S  S  K  I  C  S  C  S  S  *  N  C  N  K  W  E  *  K  W  L  F  S  *  F  K  W  S  V  W  F  K  I  S  F  L  S  L  S  K  K  T  H  *  G  K  F  N  S   : A  E  D  L  C  Q  E  I  R  I  T  P  N  F  A  F  R  E  S  *  * :   I  A  R  D  V  A  E  W  R  R  Y  Y  H  *  *  W  G  D  S  F  S  I  S  F  L  M  W  I  Y  L  L  V  D  I  W  A  S  G  I  S  K  *  R  C  Q  S  K  Y  G  L  *  G  R  G  I  I  *  T  G  N  P  A  Y  L  P  A  F  T  T  S  I  A  W  G  W  K  F  L  C  D  S  A  S  P  C  P  Q  R  A  *  S  F  C  Q  R  I  A   : R  A  S  *  K  W  *  C  Q  C  H  R  A  F  *  T  W  S  C  D  V  E  E  K  I  L  P  S  C  N  Q  I  P  S  S  G  S  R  K  V  G  W  R  *  S  G  S  C  P   : S  L  Q  C  P  W  C  Q  L  C  T  *  W  E  N  *  Q  R  N  C  S  V  *  K  C  C  K  S  S  T  W  L  C  H  G  M  E  Q  P  W  R  C  I  *  E  N  Q  R  L  N  I  C  S  K  C  I  *  R  G  T  S  F  *  S  *  Q  Q  N  S  S  S  *  A  R  C  I  E  G  Q  S  N  N  V  *  R  S  I  S  E  I  *  E  E  L  I  *  L  A  H  *  F  F  Y  T  L  V  L  I  I  F  L  R  S  S  F  C  S  L  F  P  L  S  P  T  Q  V  E  F  V  V  M  A  M  L  K  F  W  M  F  H  N  R  S  C  L  N  F  L  F  L  V  *  M  K  *  T  V  S  I  L  L  Y  L  H  R   </first_frame>
            <second_frame>  P  D  R  V  G  *  D  K  L  Y  Y  P  Q  E  A  K  N  R  R  K  F  Y  Q  E  *  F  I  L  C  P  *  K  F  N  L  D  A  S  Q  F  T  L  Q  *  F  E  S  *  K  Y  T  L  F  V  D  R  R  K  E  M  L  M  I  Q  S  T  I  S  L  P  L  Q  K  S  V  L  V  P  A  K  I  A  T  S  G  S  K  N  G  C  F  L  D  L  N  G  R  C  G  S  K  S  A  S  Y  H  F  P  R  R  P  I  K  G  N  S  I  Q  :  L  K  I  Y  A  R  K  S  E  S  L  P  I  L  L  S  E  K  V  D   : E  L  P  E  M  L  L  N  G  G  D  I  T  I  S  S  G  E  I  L  S  L  S  A  F  S  C  G  S  I  F  W  L  T  S  G  Q  V  A  L  A  S  E  G  V  R  V  N  M  V  Y  E  V  G  E  L  F  E  L  G  I  Q  L  T  Y  L  L  L  L  L  A  L  L  G  V  G  S  F  F  V  I  R  Q  V  L  V  R  R  E  L  D  L  S  A  K  E  L  Q  :  E  Q  V  R  S  G  D  A  S  A  T  E  L  F  E  L  G  A  V  M  L  R  R  K  F  Y  P  A  A  T  K  Y  L  L  Q  A  V  E  K  W  D  G  D  D  Q  D  L  A  Q  :  V  Y  N  A  L  G  V  S  Y  V  L  D  G  K  I  D  K  G  I  A  Q  F  E  N  A  V  K  V  Q  P  G  Y  V  T  A  W  N  N  L  G  D  A  Y  E  K  T  K  D  L  T  S  A  L  N  A  F  E  E  V  L  L  F  D  P  N  N  K  I  A  R  P  R  R  D  A  L  K  D  K  V  T  M  Y  K  G  V  S  V  K  S  K  K  S  *  Y  S  *  P  I  S  S  F  T  H  L  C  *  L  S  F  *  G  A  L  F  V  L  F  F  R  F  L  L  H  K  W  N  S  L  S  W  P  C  *  S  F  G  C  S  I  I  E  V  V  *  T  F  C  F  W  C  K  *  N  E  Q  C  L  F  Y  F  I  C  I  E  </second_frame>
            <third_frame>   L  I  E  L  V  E  I  N  F  I  I  L  K  K  Q  K  T  E  E  N  F  T  K  N  D  S  S  Y  A  P  K  N  S  I  L  M  L  P  S  L  L  F  S  N  L  N  H  K  N  I  P  F  L  *  I  E  E  K  K  C  *  *  Y  S  P  P  F  H  F  L  F  K  N  L  F  L  F  Q  L  K  L  Q  Q  V  G  V  K  M  V  V  F  L  I  *  M  V  G  V  V  Q  N  Q  L  L  I  T  F  Q  E  D  P  L  R  E  I  Q  F  S :   *  R  F  M  P  G  N  Q  N  H  S  Q  F  C  F  Q  R  K  L  M  :  N  C  Q  R  C  C  *  M  A  E  I  L  P  L  V  V  G  R  F  F  L  Y  Q  L  S  H  V  D  L  S  S  G  *  H  L  G  K  W  H  *  Q  V  K  V  S  E  *  I  W  F  M  R  S  G  N  Y  L  N  W  E  S  S  L  L  T  C  F  Y  Y  *  H  C  L  G  L  E  V  S  L  *  F  G  K  S  L  S  A  E  S  L  I  F  L  P  K  N  C  K :   S  K  L  E  V  V  M  P  V  P  Q  S  F  L  N  L  E  L  *  C  *  G  E  N  S  T  Q  L  Q  P  N  T  F  F  R  Q  *  K  S  G  M  E  M  I  R  I  L  P  K :   F  T  M  P  L  V  S  V  M  Y  L  M  G  K  L  T  K  E  L  L  S  L  K  M  L  *  K  F  N  L  V  M  S  R  H  G  T  T  L  A  M  H  M  R  K  P  K  T  *  H  L  L  *  M  H  L  K  R  Y  F  F  L  I  L  T  T  K  *  L  V  L  G  A  M  H  *  R  T  K  *  Q  C  I  K  E  Y  Q  *  N  L  R  R  V  D  I  A  S  P  L  V  L  L  H  T  C  A  D  Y  L  F  E  E  L  F  L  F  S  F  S  A  F  S  Y  T  S  G  I  R  C  H  G  H  V  E  V  L  D  V  P  *  *  K  L  F  E  L  S  V  F  G  V  N  E  M  N  S  V  Y  S  T  L  F  A  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37789" stop="37998"/>
                    <exon start="38167" stop="38227"/>
                    <exon start="39478" stop="39770"/>
                    <exon start="40169" stop="40315"/>
                    <exon start="41273" stop="41554"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYTLFVDRRKEMLMIQSTISLPLQKSVLVPAKIATSGSKNGCFLDLNGRCGSKSASYHFPRRPIKGNSIQLKIYARKSESLPILLSEKVDELPEMLLNGGDITISSGEILSLSAFSCGSIFWLTSGQVALASEGVRVNMVYEVGELFELGIQLTYLLLLLALLGVGSFFVIRQVLVRRELDLSAKELQEQVRSGDASATELFELGAVMLRRKFYPAATKYLLQAVEKWDGDDQDLAQVYNALGVSYVLDGKIDKGIAQFENAVKVQPGYVTAWNNLGDAYEKTKDLTSALNAFEEVLLFDPNNKIARPRRDALKDKVTMYKGVSVKSKKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41717" PGL_stop="41266"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41717" e_stop="41266"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="41717" e_stop="41266" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41717" stop="41266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGAAAGTTCAAACAACTTCTATTATGGAACATCCAAAACTTCAACATGGCCATGACAACGAATTCCACTTGTGTAGGAGAAAGCGGAAAAAGAGAACAAAAAGAGCTCCTCAAAAAGATAATCAGCACAAGTGTGTAAAAGAACTAATGGGCTAGCTATATCAACTCTTCTTAGATTTCACTGATACTCCTTTATACATTGTTACTTTGTCCTTCAATGCATCGCGCCTAGGACGAGCTATTTTGTTGTTAGGATCAAAAAGAAGTACCTCTTCAAATGCATTTAGAGCAGATGTTAAGTCTTTGGTTTTCTCATATGCATCGCCAAGGTTGTTCCATGCCGTGACATAACCAGGTTGAACTTTTACAGCATTTTCAAACTGAGCAATTCCTTTGTCAATTTTCCCATCAAGTACATAACTGACACCAAGGGCATTGTAAACCTGTAAA</gDNA_template>
            <first_frame> N  R  K  F  K  Q  L  L  L  W  N  I  Q  N  F  N  M  A  M  T  T  N  S  T  C  V  G  E  S  G  K  R  E  Q  K  E  L  L  K  K  I  I  S  T  S  V  *  K  N  *  W  A  S  Y  I  N  S  S  *  I  S  L  I  L  L  Y  T  L  L  L  C  P  S  M  H  R  A  *  D  E  L  F  C  C  *  D  Q  K  E  V  P  L  Q  M  H  L  E  Q  M  L  S  L  W  F  S  H  M  H  R  Q  G  C  S  M  P  *  H  N  Q  V  E  L  L  Q  H  F  Q  T  E  Q  F  L  C  Q  F  S  H  Q  V  H  N  *  H  Q  G  H  C  K  P  V   </first_frame>
            <second_frame>  T  E  S  S  N  N  F  Y  Y  G  T  S  K  T  S  T  W  P  *  Q  R  I  P  L  V  *  E  K  A  E  K  E  N  K  K  S  S  S  K  R  *  S  A  Q  V  C  K  R  T  N  G  L  A  I  S  T  L  L  R  F  H  *  Y  S  F  I  H  C  Y  F  V  L  Q  C  I  A  P  R  T  S  Y  F  V  V  R  I  K  K  K  Y  L  F  K  C  I  *  S  R  C  *  V  F  G  F  L  I  C  I  A  K  V  V  P  C  R  D  I  T  R  L  N  F  Y  S  I  F  K  L  S  N  S  F  V  N  F  P  I  K  Y  I  T  D  T  K  G  I  V  N  L  *  </second_frame>
            <third_frame>   Q  K  V  Q  T  T  S  I  M  E  H  P  K  L  Q  H  G  H  D  N  E  F  H  L  C  R  R  K  R  K  K  R  T  K  R  A  P  Q  K  D  N  Q  H  K  C  V  K  E  L  M  G  *  L  Y  Q  L  F  L  D  F  T  D  T  P  L  Y  I  V  T  L  S  F  N  A  S  R  L  G  R  A  I  L  L  L  G  S  K  R  S  T  S  S  N  A  F  R  A  D  V  K  S  L  V  F  S  Y  A  S  P  R  L  F  H  A  V  T  *  P  G  *  T  F  T  A  F  S  N  *  A  I  P  L  S  I  F  P  S  S  T  *  L  T  P  R  A  L  *  T  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0034I10.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41559" stop="41365"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQLFLDFTDTPLYIVTLSFNASRLGRAILLLGSKRSTSSNAFRADVKSLVFSYASPRLFHAVT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 54 chains have been computed
$ 
$ memory statistics:
$ 16528 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2066 bytes was the average size of a spliced alignment
$ 12968 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1852 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 64 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:00:04
-->
