<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:52:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6822" ref_strand="+" ref_description="SGN-M6822 C2_At1g48200 [cosii_markers]">
      <seq>ttggcaagcaaagtcggagacgcagtaagcaaagcgctgaacagcaacaaagtgttgaatgtagtgttaatgagtgcatttggattgctatgtatgagatcagtgcagcaacagaagaatatggaagttcttgaagcagaaaaggactctttgctcaaatctaataaagctatgaagaaggatatgtgggattggaagcagcagctttttgctgaagctgagttacccaatccacttattccactctctaagattaaagccatttatggagacgttcaaaccaccacatcgacttctggtggagatgctcataacggagatggaaaatcacctgcaggagtatttgttatctgaaagccattgttgtagcttgttcatgacgaagcaagttgttttctggcaaaataacaagcggccactcagatctgtgaaatatcatgcttcagttagtagaatgggaagcttgggaaagtggtgtaattctgagttttctcttggaacttagtgatttacagttgttttttcccttctcctctctcatgtagtccgttaggaggtcgagatccaagtttaatttgtggtgacactgcaccacttatctacttttgttgctgggactatgccatgagctgagtttcactatctatcaaccaaatatttatgagttcatgcatttggatgtttgattgattccacttcagtttaggcatgggtgttctcagcaagataacaatgtaaccagcttttcttagtcactgtgaagatatgatattttttataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="28621" stop="35398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28921" g_stop="29218" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34616" g_stop="35098" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="781" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35099" i_stop="35349" i_length="251">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35350" g_stop="35364" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="796" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-M6822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28921" e_stop="29218"/>
          <exon e_start="34616" e_stop="35098"/>
          <exon e_start="35350" e_stop="35364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTGGTATGACTTTTTTCCTGTTTCTTTCGGAATCATAGCATTTGGGTTCTCTGGGAATTGCAGAAATTAGCTTTACTGCAAATGATTTTGTGGGTTTGGCTTGTTTGGATTTGGGTATCAATGATTTAATCTGTACTTTGCTCTATCAAAAATGGTCACTAATTAGAGGAATAGGGCTGAAAGAAATTTAAGGCGGTTTGGGTTTAGTCTGATGTTAGGGTTTAGTTTAGTCTGATGTTAGGGTTTAGGGTTTTACTTCCCATAAGTTTGCTGGGTCAACTTGTTAGATAAATTATGATTACAAATTTGAGGGATTGAGATTTGGTTGGTTACTGGAAATAAGAACTTGATGGGGTTTCCATTGTAAGTGTCCCGGTTTTGCTGCTTCAAAGAGTTAAGATTTCTGTATTAGATCAGGTCTGATACAAGTATTCATTTGGTTTTGTGGCTGTTATTATATTCAACGAAATTTTACGTGGACAGGTGGAACTTAGAGGTTTATCCAAGATATAGCAAGGTCTAGACTTGAGCTAGTTACTAAAAGGATTATAAATATAGCAGCACTTACCAAGGATAAGTTCTTTTAGAAATCTCAGGTGGATGAACCCTAGTTTGCTTTATAGAAATGTGATTACTTGAAATTGTATGGGTGCAAGAGCTGATGAAGCAAGCGCTCACCTGGTGTCGTAGCCCCTATTGATATAGTCTTTTGCTACAAACAGTCAAAGCTGTATGATGGTGGAATGGAATTTCATAGAAGTAAAAACCAGATGCATTTATAAGTGTATCATTTCTACATGTATAGATGAGTGGGTGTTATTTGTAGAAAATCATTTCCTCTTGAAAGGTTTTCTACTTTTGGTATACTTGTCGTATATGGGCAAAGCTTTTACCCTTTTCTAATGAAATTGATTAGTTCAACAAAAAATTAAAATTTAGTGTATCATTTCTTTATAACTATATTAGACTGTTAGTGGGTGAATGTTGTTCATTCCATTAATTGGATCTTTCGCCTGCTCTTGCAGCATTATCCATGTCCTTCCTTATCATCGTTCATCATATGCCACTTTTGGTGTTCCTTTGCATTTATTGAAGTAAATCTCTCTGGACTATCATTTATTCAAGAATCAAGATGTTGGGAAGCAAAATTCTTCAAGCTTTATGATAAAATAGTAAACACACCATTCGTGTAACTAATGAAATGATAAATTCAAGTAATGTTTCTGCAAAAATTGGTTAAATTACCAAATAAAGGGATTCTGCTATTAGAAGTCGTATATATGACGTATTAGAAAAGATAATCAAAGTACGAAATTTTGTAGTATTACCTCTGCTTAATGTTACCATTTTTGAAATAATAAAAACCCACTTAACTTATAATGGTTATCTTTCTATTATTTTATACTGTTTAATTTTTGCTTCTCTAGAATCGGACCATTGAGAATCTTCCAAAATTGCAAAACCTTGATAATCTTTTCCTCTCCCTCCTTTCTATTCTCCTTCACATATTACAATTCTTTTAGACAGTTTTTGGTGATCATCCACTCCGCTGATTAAGCCTTTCTTCATCAATAGAGAAATCATGTCATTGTACACCAAATTATGTTTCTAGCTACGGACAATCATGGAGCATTAGCAATAGGTGGACGATAAGTCAAACAGGGAGTCTCTTGCCTTTTCGATATTTTAACAGACACAAGATATTTGAGAATTCTGACTCAACAAGAAAAAACAAGAAGAATTTTCAGAGCACACAAGATTATAGCCTAGTAGTATATGAAGTGGGTGGAAACCTTGGGAGCAGGGTTCAAGTTCCAGCAATGACAAAAATCAACTTGTTGGCAGATTTATTCTATACTTGTGCGCTGGTGGGAATCATGTACCCTGTGGTAGTAAAGCTGTAGAATAATTGGTCCAAACACCACCATTATAAAGAAAAAGAGAAAAACAAGATTCATGATGGGCCTAGATTCCTCATTTGACATTAACACCAGAAAGGTAGACATTGCCGATAAATATGGAGATTCATTGCGAAGAGTCCAAATGCCCTGCTAGAAAATGCTCAATAGTCTACAAAGCCAGTCTTTTAAAGAAACCTCTCCTAACAGAAAATGCAAGTGTCATTAATGAAAAATTGTGATAGATGAGAGTTGTACCATCCTTAGGATAAAGTTCCTCAAAAGATGTCTAGTAGGAACATCCTAACATGTTAACACATGCGCTTAATGGAGTGGTTGACTCCAGGAGGTAGGGGAAGTTGGAAATGTTGAGCATATTAGACTTCGACAGCTCATATGATCATGTGAATTGGGAGTTCTTGGATTTCATAACGCTGTAGACAGGATGTGGATTAAGTTCTCCCTTTCAAGGACCAGATTCTCAGTCCTAGTGAATGGTAGACTTTTGGGAAAAAAGAAAAAGTTGTGAAGATCTTCTCAATATTTTATTGCTGCAATGGTTTATAAATTCATAGCTTATTTGCAAAATGTAATAAAGTACCACATGAAATTTTTTGATGAAGTAATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACATACAGAAAACCTTTGTAGCTGCATTACATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGATAATAGATTTCATTACTGGCATCAAGAAGATGCAAAAACTTACAGAAAACCTTCGTAGCTGCATTATATAAAGAACTATGCTAGTGCCAGGGAGCTAACAAAGTTCAAAAAGGTTTCAGGGTAATCTACCAGAGAAGTAGTTTTCCACATAAATAGAAACATCAGCCATTGGGCCTTGATGTAATAATTTGGAGTTGACGAACCATCAAAACATCTTTCTGTTCCTCTTTGTCCACATACTTGCAGGTATCATTTCCAGATTTCCTTGATGGCCTTATCAACTTTCCAACTACTCCAACCTTCATTGGACTCTTAACTGATCTGTGGGTTGCGCAGCTGAGACCAAAAATAGAGTAGAACAAGCACCATATGTGACTAGCAATTTTGCAGTGGAGGAATAAGTGACTGTTGGTTTCTATCTCCTGTTGACACATGTAGCATCCGTTGACTATTTGGTCGCTCCTTTTCTCGAGATTGTCTTGGGTGAGGCATGCTTTATAGTGTCCAGCAGAAACATTTAATTTTTTTGGGCAGCTTAGACTTCCACGGCCAGTAGTTAATCAAATTATTTGTAGCATGAGTTTGCATAACCCGCTTTACCTGAGTACCTGCCATCATTTGCACTGCCCCATCATAACTTATTTGCTGCCTGCAAATTCAATCTGTATCCTTCCAGCCTGGAGATTCCTTTTGGAAAGAAGTTGCTGGTTTTGCCTTCTTTATTCTGAGAGATATGGAGTTTGGCTCACTAGAATTTGAAAAATGTTGTGGAATTCATCCTTGAGGATTGTGTTGTTTAACCAATATCTTTCCTGAATGTGGTGTGTAGACCATTGCCTGGTATTAATTGTGTTCTCTGGAAAGAGTTCCTCCTTAAGCTTGCTATACTCAAATATTTTGTACATAAATTCTTAGCTGAAGGTGTAACATTTATCAATGTAAAACCAGCCTATCACTTTATGAGATCCCGATCCTGCGAGTTTCAAACTGTGGGGAAGGGTAGAGGGACAAGCACATTGTCCACCTAGTTCCATACCATGCATCGTTGACCCTTGGGATTTCTTGGTTATAAGAAAAGAACCTTCTGTTCTTTTTGTTTTCTCGAACTCGGTTTAGTTCTTTTTAGATTTAAATCTTGTGAGTCTGGTGATAGCAAAATTCTTGTAGGCTGTAGCCACTTCTAAATATCTCCTCTTTAAGAGTTTGAGATTTCAAAACTATATTTAGTTCTATCTCTCTTTTATGTATTTTAGGAGATCATGTGCTAACATTTCTATATGATAAATGAAGGACTATGCATTGTACGTTGAATTTTGCAGTAAAAGAATAGTTGGATTTGTGCCACAAATTTGAGCAAGCCAAGATAATCTATGAGTAAATATTTGATTGATGCAAGTTTCTCTTACAAGGCAATCTTAGCAGAAAGACCCCCATTAGTGGCCTCAGTCGAAATGATTAAGAGGATGTGGAAGTTCTCTTTTTCTCTTTGTCTAACAATGACTGGTTGATTGAGAAATCCTGTATAGTGTGTTTTTCTTGGGGTATACCTTCCCTGGGTAAGAAGAGCTAATGATCTCGCTAATACAACAGAGGCAAAAGTTAGATAGAATTTGCATAGAACTTCTCTGAGAGAGAAGAAAAAGTTGTGAACATCTCCCCGATATTGATTCCTGGAGGGTTTTAGCTTCTGACCATCACAATTATTATGTTAGAGACCAAGTATAAACTTGGGCTGAATTGCTTAACTTGTATTTACAGGAAGTAATACATAAAGTTTTCTGTCAATAGCAAAGTTATTCTTCACATAGGATATTTTGGGTAGGAAAAAAAGGGAAAATGGGAGAATAACACACCAGAAAAGTCAACTCAAAGATGGCTTCTGCCTTCTGAGGTAGAATTGGTGGACTGAGACGTCGATGCTAGTGATGGCACTTGAAAGGCTTTTAACGCTGTTTTTTTAAGAAGCAGAATAAAAGTTTGACCTTAAGGGCATCAGATGCTAGTGGCCCTTTCAGGAAGGTGGTGAACACTGAACAAACCCTTAACCTTGTTTTTGCCACAGATCTACCTCAAGTCATTTCTTTTTCTTCTTGAGCTCCTTTTCCTCTGGTGGATGTCAAATAACAACAACTGGCATATTGTGATTGAGTATTGACAATAAAAACCATACAACTTTGAACAGGACTTCATCTGACACAATCTTTTGTAACTGCCCGGAATTAACTTCATATTGTTGCTAATTGTTAAAAGCCTTTTGTTGCTGATATATATATAGACGAGTTCTTAATATGAACTTGGTAATGAACCAAAATCGAGTTCTCATTTGCGGTCTTTGTTATTTTCAGACCAAGAATAGGGAAGAGAAAATTCAGTGTCATCCCGTGAATTAGTGAATTAGGCAGGATCTTTTTTTATTTAGAATAAGAAGCAGTGGATCAATTGCCCCTTGTGCTTTGGTCTAGTGGTAAGATTGCAGCTTGTCATGTGTTATTGGCCCTCGGATTTCTCGGTTATGGAAAAAAAGTGGTGTGTCAATTTTCGAAAATCTTATTGTAAATGTGAAATACTTATAGGATCCTTGAATAACTGAATTTTTCATTGTGGAAATGACTTAATTATTCAATATCTTGTGTTTCATAATCACTGAAGGCAATATAATCCACAAACACTCATCTGCATGCGCGCGCGCACACACTTTGTATAAGTATTATGGAGGGAAGTTGCTACTTACATTGCTTATCATCAAAAACATACAGGTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAACTTATTTAGTGATCATGCAGCTTACCTCAACTTATTTGGCACTGAGGTTTGATAGTTGTTGTGATCAAATTTGTTACCTAAAGGTGGCTATACAAACAAGTGAAAAATTACCTAAGTAGACATAGCTACAATATTTACAACATACAAGTGTAACTATTATACTTTAAAAATACCATCAAATAATCTTTTCAATGAAATGAGGTTATGTTAACCTGTTGTAAATACCTATCAAATGACATCCTTATATGCAGGAACTAGAACAAAAA</genome_strand>
        <mrna_strand>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA...........................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6806-2" ref_strand="+" ref_description="SGN-M6806-2 C2_At1g44446-2 [cosii_markers]">
      <seq>tttcacttcctttctctttgtgccgctctaacaagtcttgtactagaaagtttgtcaaagggagctttggagtatttgctgtgtatggggaggagggtgggattccagataagaaaagttcctggttgacactctttaatgtggaagatcccaggactaaagttccacaaagtaaaggcaagttcttggatgcaaatcaagctttagaagttgctagatatgatctacaatactgtgattggagagctaggcaagatgtacttactataatgctgctacacgaaaaggttgtggaagtattaaaccctctggcacgcgattataaatctattggaaccatgaagaaggaacttgcagaattgcaagaagaactttctcaggctcacaaccaggtacatatatcagaggcccgggtttctgctgctttagataagctagcttacatggaagaattggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactccaaaaagcaagcaaccacgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacaccatgttaccgattgattgctttgagcaatcgtgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgccctcttgatcttggctcagtaaatgagggtcgcatccaatgcccttatcacggatgggagtattccaccgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgctgagatagtcatggaacttccagtggaacatggactacttttagacaatcttttagatcttgcacacgcacctttcacacatacatcaacttttgctaaaggatggagtgtaccaagcttggtaaagttcttgactcctgcatctggtctgcaaggatattgggatccatatccaatagatatggaatttagaccaccttgtatggttttatccaccattggcatctcaaagccaggcaaattggaaggacagagtaccaagcagtgttctacgcaccttcatcaactgcatgtttgcttacctgcatcacgacagaaaacacggttattatatagaatgtcactggattttgctcccctgctgaaacacatccccttcatgcaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="53719" stop="57398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54019" g_stop="54068" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54687" g_stop="54923" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55157" g_stop="55261" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="392" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55448" g_stop="55723" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="668" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="816" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56205" g_stop="56389" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="1001" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56482" g_stop="56594" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1002" r_stop="1114" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56828" g_stop="57098" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1115" r_stop="1385" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-M6806-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6806-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54019" e_stop="54068"/>
          <exon e_start="54687" e_stop="54923"/>
          <exon e_start="55157" e_stop="55261"/>
          <exon e_start="55448" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56389"/>
          <exon e_start="56482" e_stop="56594"/>
          <exon e_start="56828" e_stop="57098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAGGTATTCTTTACTTTCTTTTACTTTTTTTTTTTGTTGGGTGTTTGCAAGAAACTATAAAGATTGCTTCTTTGTCTTGATTAAGCTTGTTTATGGAGACCCTTTTTTAAATTGTAGTGAAAAAAGATCATAAAAGTCAGTTTCTTGATGTTGGTTATGTGTATATAGATTTCAAAACTCAAAGGGGTATGCACTTTCGTATTTTGAAACATGTTTGTAGAATTGTAGTGTCAAAAGTGGATCAGTTTTGATTTAGTGATCTTGTGGATTAGTAATATTTTTTGCATAGGTTGGTAACTTAGCCAGTTAAGCTCTTTTACTGCACTCTGATGGAGAGTTCTGATTGTTCACAATACTTGAAATTTAGGTGCTTTTTGTCATGAAAATTTTGAGTGTTTGGAAAAAGTAGTTTTTATTTCGAATAATGAAAGATGATATTTGAAAATTCTTTGATTGTCCAATAGATTATCTGCAAGAATAAGCTCATAGTCGTTTAATCGAGTAGTCCTTTAGGCTATTGTTCATGAAATAGCAGAATGGAGATTCATATGTCACTTGCGTTTTCTTCGTCTGAGCAGAAGAATTGACTGTCTACTGATTTTGCATCTTGTTCACAATCAGTTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAGGTACATATTTGAATTAATGTGTGTACTGAACTTGAAAACCTGGTAAAATACAACATCCATTATCTTTATCTAGGTCTATTTACAAGTTTGTTGCATTGCTCTTTCTCATTTGCCTTGCTTTCCAAATATAGTTCACTTTATTTACTCTCTATTGTACCTTTCTTAGAGTTATTTCAAATTTTCCCAGTCTTCATCGTATTCTACATTGTATTCTAATCAGTTCATGTAACTAGGTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAGGTTTGGAAAATTCATTTTGATACAAATTGCATTTTCTGGTTATTCAGGGTGATTTCCCTTCTATATGTCAAACTTATTGAAACGAGTCTTCTGAAAAATAAATGGAAAGTTATATGGAAAAACATTTCCAGGATATTGCTTAGTTTCTCATAAGTATAAAGCTTTATATGTGAACCAATTCAACAGGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAGGTAGTAATGGACATGAACATATGATGGTTATTATTTAGACGTTTAGTACTATATCAATAGTAGAGTAAATTGTCTTTCTATTTGGTTTCATGTGGTTTTCCAGAAAACTTGTTTTTTCTGGTCCAAGTTATGAGTTCTAAGGAATAAGTAATGCTTTCAAGTTGTGCATTGTGTTTTGTGTAGTATATGAAGGTCTACGTACTTATAGTTTACCTTTTTTTTTTTAATTTCAGCTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</genome_strand>
        <mrna_strand>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG.........................................................................................................................................................................................................................................GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG..........................................................................................................................................................................................GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG..................................................................................................................................GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG............................................................................................ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG.........................................................................................................................................................................................................................................CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6806-3" ref_strand="+" ref_description="SGN-M6806-3 C2_At1g44446-3 [cosii_markers]">
      <seq>ggtacatatatcagagactcgggtttctgctgctttagataagctagcttacatggaagagctggttaacgataggcttctgcaagagagaagcacagtagaatcagaatgcacgtcttcctctgcaagcacgtcaacaggattattagacactcctaaaagcaagcaaccccgaagaacgctgaatgtctcaggtcctgtccaagattacagttcccgtttgaagaacttttggtaccctgttgcattctccgcagatcttaagaatgacacgatgttaccgattgattgctttgagcaatcatgggtgatctttcgtggggctgatggaaaacctggatgtgtccggaatacatgtgcacatagagcctgcccccttgatcttggctcagtgaatgagggtcgcatccaatgcccttatcatgggatgggagtattccactgacgggaagtgtgagaaaatgccatcaacaagattactgaatgtaaagatcaaagcactgccctgctttgagcaagagggaatgatatggatttggccaggaaatgatccacctgcagctacccttccttctttactaccaccttctggatttcagatccatgcagaggtttgaaatcactaccgttagattttcagttgtttatcttacaactcatgtttgagtattttgccttatgactgttttcattgaaactgcagatagtcatgggaacttccggtggaacatggactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="+" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="55147" stop="56818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55447" g_stop="55723" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55927" g_stop="56074" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="426" r_length="149" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56205" g_stop="56518" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="741" r_length="315" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="+" ref_id="SGN-M6806-3" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6806-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55447" e_stop="55723"/>
          <exon e_start="55927" e_stop="56074"/>
          <exon e_start="56205" e_stop="56518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATGGTGAGTCAATTATCTCATATCTGCCAGTCTCTTTAACCTAAAAGAAAGAAAACATTTGATCTAAAACACAGAAAACCATGTAGATGCAAAATTATGATGCCAAAACAAATTAACAAGCTATATGATCTACGCTCCTACTTTATGGTCTTCCATGTTTATTCTTTTGGATCTTCTATTGATGACTGTTAACTGTATCTTTGTAGTTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCA-CGGTGAGATAAATTTGAATCCTTCCATTTACAGTCCAGAGTTCATACTCGAGAGATGGACAGCTTTTAAATGGGTTTTGTAGAGGACATGGAATAGCTTACACTGAGTTTCATGTTTGTTAAATGAATTTAGGATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCAT-GGAACTTCCAGTGGAACATGGACTACTTT</genome_strand>
        <mrna_strand>GGTACATATATCAGAGACTCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAGCTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCTAAAAGCAAGCAACCCCGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACGATG...........................................................................................................................................................................................................TTACCGATTGATTGCTTTGAGCAATCATGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCCCTTGATCTTGGCTCAGTGAATGAGGGTCGCATCCAATGCCCTTATCATGG..................................................................................................................................GATGGGAGTATTCCACTGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCAGAGGTTTGAAATCACTACCGTTAGATTTTCAGTTGTTTATCTTACAACTCATGTTTGAGTATTTTGCCTTATGACTGTTTTCATTGAAACTGCAGATAGTCATGGGAACTTCCGGTGGAACATGGACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6681" ref_strand="+" ref_description="SGN-M6681 C2_At1g21780 [cosii_markers]">
      <seq>aactttatataatgattcatcactagcagaggctaggggaagaagaaggaggatgacagacagcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcacagcatctacttacaaaagatctgacccttttaaaattggtatatggaactggcatctgtcaattgagaagaatcggtatttgtatattcgattgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgcttcgtgttactacaactggaaccaatcggagacctcatatatctcctgtatatgagaggctgcttcgaacaagtgatgactttgtgtggcctattgattcttgtttacaaggtcgatttgtcattgatgttgagttccttgacctgaagatctacaccccaaatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatactgatgttaccattaatacggctgatggatcagtgcaagctcacagagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagagtcctctataatcgacatagaagacatgtcaacagaatcatgcacagcgcttcttagttacttgtatggaaccataaaacaagaggatttctggaagccccgattggcattactgggtgcggcaaacaagtatgatattgtagatttgaagaatgcttgtgaggaaagtctcctagaagacatcaactcgggtaatgtcctcgaaagactgcaagaggcctggctttcccagctaaataaattgaaaaaaggttgcttgatgtatttgttcgattttggcaagatttatgatgttagggaggaaattaacaattttttcagacaggcagatagagatctgatgctagagatgtttcaagaagtgctcccagtttggaagcctgcctaacatgatgaggtttttgccccagttgtatatgggataactctatctattaattactaagctgtagctttctaagaaagccatgttgtatctatatgctaatcctatgtaaattttgttgaacttattaagtgtattatctggtataaatttatataaatggttaatgttctgtttgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="62011" stop="16370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61711" g_stop="61546" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="317" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="433" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="58684" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="1220" r_length="787" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58683" i_stop="58258" i_length="426">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.059" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58257" g_stop="58236" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1242" r_length="22" r_score="0.455"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58235" i_stop="57131" i_length="1105">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.764" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57130" g_stop="57124" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1243" r_stop="1249" r_length="7" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M6681" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1250</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61711" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="58684"/>
          <exon e_start="58257" e_stop="58236"/>
          <exon e_start="57130" e_stop="57124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTATATAATGATTCATCACTAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTACCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAACTTCTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCACAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCACAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCAAGCACCTTGGATTTGGATTTCTCTGTTGTTTGCCAGCTGAACCCTTGGAAAACTGGTAGAAACCATCCAAGCCAATATTCTTAGTAGAAACTAAAAATGGGATTTAGTAGTGTATTTTTGTATTTGCAGAGTACGTGGCGTTTCACTGATTATGTTGTTGGTTTCATTAAATTAATTTTTTCCTCGATAATGTTATATTACATAAGAAATAATTTTTCACAAGACTCAGCAAGGGTACTACGCCATATGTTGTTTGGGTCATCATCTACACTATAATGAGCATTTGCATATTGTCCAGAAGTACACGATTCTTGGATCTGCTGCTACTGTGTTTAAAGGGTCATCTTGCATAACTTTGAGCTCAGTTTTCCTAGCCAAGACTCAGAAATGAAAACATGGATTGTTTCATCAAGTTTTGTCTCTTGTTCAGCATAGGAACATCGACCACAATAATATACTTACTACAAGGATAATATTTCAATACTATCATACTGATTCAACTGAGCTCAAACTGCTACCAAAGATCAAAACATCTCTGACTTATTGTTAGGCAAAAAGAATACTTGCAATCTGAGATCAGAAATTATGCTATAACAAGGTGGAACGACATTGCTGGGGGACTCTAGACACTTACAAAGAACCTATGAGATTTTTTCAAGTGGCAATCAGGACAGGATAGATTGTTGGTGAGGAATGTAAGGTTGCTCAAACTGTACACGAACCTACAAAAAAATTGTGTACAGCTATATTTACAGTAGAGTTGAAGTATCTCCTCACAAGAAAAAATATGGAAAACTGCAGTAAGTGAGAGCTTCTCAGCAGCTGGACTGAATTTTGGCGTGGGCTGACTATGAAGAGATCAAAGTCATCTTGAAAAGTAGAACCCAGTTCTTGATAGAACGATATTTATTTGCTGAAAGGTAGTTCCTTTTCTCCACTATCTACAGCGTCTCTCCATATTCTATACCTCACACCTAGCTTATCGTAAGACACTGGCAGATTCCAAATATTGGCGCCATTGAGCATGCGATCCTGCTGGCCAAGCACAAGCCGTAAGTCTTCGTTTAAAACCTGTATACAAGGAAGAGAAAAATGTTAGAACATATCATTCATTTTGGTACCCTCTTTATTTTATATTCATATAGGAGAAGTTCTTTGCAGCATTATCCTTACTGAAGAAGCAAAAATGTAGTAATATCTTATATAGAAGGTGAAAGTTTATCTGATATTTGGCAAATTTACTATTTCAGAAGATCATGCTCACAATCATGTGGTTCTATTTTAGGCAAATTTATGTAACTTCCAGAAATCAAAGAGTTTGCAAATCTAAATTATTGTGACTATGAGCTTCTAGAGCCATGTGATGGTAATCCTGGAGTTTAAGCTCTGATTTTGTTCTATCCGTTGCATATTTCCAACTTCAAAATGCATAAATTTTCAAGATAGATGTTCCAGAACAAAATGCAGTTTTTCATAGATCAGGCAGTTGTTATTTCATGAAGTCAGACTTTTATAAGATGTTCATGTAATCACCATTTTTTACAAAGTTTTGGACAGAAACAAA</genome_strand>
        <mrna_strand>AACTTTATATAATGATTCATCACTAGCAGAGGCTA-GGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG................................................................................GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCCCCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTCCCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAATTTTTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCCCAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCCCAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6681-2" ref_strand="+" ref_description="SGN-M6681-2 C2_At1g21780-2 [cosii_markers]">
      <seq>gaaaagggggaagaagaagaatgacagagggcaaggtagagactctatcaaggttagctcaatggaggatcgacaatttcgcagcatctacttacaaaagatctgaccctttcaaaattggtatatggaactggtatctgtcaattgagaagaatcggtctttgtatattcggttgtttcctgaaccttctcggctttcgaaagagcagcttcctcctccttttgctcgctttatgctccgtgtttctacaactggaaccaatcggagatctcatatatctcctgtgtatgagaggctgcttcgaacaagtgatgactttctgtggcctattgattcttgtttacaaggtcgattcatcattgatgttgagttccttgacctgaagatctacacaccacatggtggagaaggaaaatctatatggcccaatgacatgattttgcaatctttagctacccaaagtactctccgatgcctctctcgcatgcttgatgagtccatccatgctgatgttaccattaatacggctgatggatcagtgcaagctcacaaagcgatactgtctgctacttctcctgtattccacagcatgttccttcacgatctcagggagaaagaatcctctataatcgacatagaggacatgtcaacagaatcatgcaaagcgcttctcagttacttgtatgggacccataaacaagaggatttctggaagcaccgattggcattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="61973" stop="58840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61681" g_stop="61546" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.643" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61465" g_stop="61314" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="285" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59908" g_stop="59793" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="401" r_length="116" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59470" g_stop="59140" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="732" r_length="331" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M6681-2" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6681-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61681" e_stop="61546"/>
          <exon e_start="61465" e_stop="61314"/>
          <exon e_start="59908" e_stop="59793"/>
          <exon e_start="59470" e_stop="59140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTGGTATGTTTTTTCGTTTTTTTTTCTACTTGATTTCTGTTTATCATCTTGTTTTTCTCATGTTGGGTTGATGGTTGATTAAGGCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTGGTAAACTCTATTTTCAGCTCTTCTCTGTTTTGATTGTACCCATTTGAGTATATTTACTATTGCAAGTTGCAGAGGTCGATTTACCTAGCAAAAGTTTGAAGATGTATTTTTGAGTTATTTTGCTTGTTTGGTGCATTTGCAGAGTTCATTTTGTTGTTATTACTGTGTTGTATTAGGTTTTCCTATCGAATTGCACCATTTTGGTTGATGTAATTTGTATTTTGATATGGTCTGGTTGTTCTTCTGGCAAAGATCACTAGTTTTGGAGAAACGTGTCTTTGTTTAACGACATCTGTATCTGTGAAAATTGAGGGATGTAATATAAAGTGTGACCGAGGTGATTGACATGGAAAAGTAGTACAATTAAATATATGTTGGATGAATTCAACTCTCAAATCTTTATCAATTTATTAGCTCCTTGATCTATTCACAAAGGTCTGGTTGCAAATCTCTATTTGCCACACTAGTGTAACTAATCTATTACGTCAATTTTCATCATGGTTATTTCCATCTGTTATGGATGATTTGGTAATGGATTTGGACTACGCTGAGCGGCTAGAGATGAATTTACTTGTATAGAGCAAAAATGCCCAATCCTCTCCTCCTGGAGGGGGGGAAACTTAGACATTTCTACTTAATAATTTATCAGGTCAGTTGTTATGCTCATATATGAAAAAGGAAACATGATGTATATGTATGCCTGGTTCTGAAACTTGTGATTTCTTTGATAAGGAATTCTTGGACGCATCTCACATTATGTTTTTCATTTGGACTGCCAATTACTATGGCATGTGTAATATTAGGGGATGGGTCATGGGTATCAAATTGTTTGCTGCATGCATCTATGATGTGGGGATGGGTGGGTGTTATCTTAGGCAACTCAGACTATCGTCGATAAAAAGCACTGAAATATTAGAGAAAGCAGTTTAGTGTCCTTAATGGTGCACATAAATTTTCCTTCTTTATATGGTCAAATTTTTTGTTTTGTTGACCAGAAGAGAAGACACAATTTGTTCATTAAGAAAAGACCTCTCTGTACATGCTATAAATCAAATTTGTACCCTTTCTTGTAGGACAAGATCCTATCTCTGGACTGCCTTAGGCTATTAATATGCCAACAATTTCTAGCCTAACTGTCGTGTGCTATTTATGCTTCTAGTAAGTATTGTTACGGTTTTTTAGTTGCACATAGAATATTCTTCAGCTGCATATGCAGACACATGTAAGTGTAGACTCTTGTGCTTCCTTGTTTTTTTCTTTGTTTGTCCAGATAAAGAGCCTGCAACTAATGTCCATCACACCTTTTCTCGCCTCTATCACAGTTGAATTTCATAAACAATTCTGTATTAACTATATTCAACATGTTATGTTGCATGTATAATTCTGTGGCGGTCCATGTTTGCAGTATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAATGTGAGTTCTTGATATTCTGAAGTGTTCCAGTGTGTGTTTAATATGCACGACTATATGAGATTACTACATGAAATGGTTCTCTGATAAACTACCTATCTAGTTGTAACAGATAGGGCTGGTGTATAGGCTTACGTGATTGAATTCTTTGGTTGTTCCCTTGAGCAGATTTTAACTGAAAAAACGAAATTTTCCAATTGTTCCATTTTACAGAAAATGGAAAAGAATGAAAAGTTTCTTCTCAGCATTTACCAATAAAAGACCTTGAGTATTTTTTTGAATTCATGTTCCTTCTCTTAGTAACCTGTGGTAATTGAACCTTCAGGGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTAC</genome_strand>
        <mrna_strand>GAAAAGGGGGAAGAAGAA-GA--ATGACAGAGGGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCGCAGCATCTACTTACAAAAGATCTGACCCTTTCAAAATTGGTATATGGAACTG................................................................................GTATCTGTCAATTGAGAAGAATCGGTCTTTGTATATTCGGTTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTCCGTGTTTCTACAACTGGAACCAATCGGAGATCTCATATATCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGAGGCTGCTTCGAACAAGTGATGACTTTCTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTCATCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACACCACAT..................................................................................................................................................................................................................................................................................................................................GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATGCTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAAAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAATCCTCTATAATCGACATAGAGGACATGTCAACAGAATCATGCAAAGCGCTTCTCAGTTACTTGTATGGGACCCATAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6680" ref_strand="+" ref_description="SGN-M6680 C2_At1g21760 [cosii_markers]">
      <seq>atttcttcctggagtttccctggatatccaaattgtcaagcacaacattcaaaaccaagaaaaatgacttcagattacacagtggaacttgctgtggaactcgaaactgctgcacggttgagagcttctcagttcatttttcctcaaaggccatggcttgatttgtatgggatcaatgttagacctgtcgctccttttggaagtgctagtagcaagcagtttgttgatcctgcattgatacacagagtgctacctgatgaactgctttttgagatcttgtcaaaaacaaccccatacaccttgggtagggcagcttgtgtttgtcgaaagtggaggtatacaattcggaaccctgtattttggcgcaatgcatgcctaaaggcttggcaggtttctggattggtagaaaactataaggtccttcagttgaagtatgatggttcatggagaaaaatgtggcttttaagaccaaggattcgtacggatggtatttatgtcagtcgaaacacatatattcgtgcaggagtagctgagtggaagatcactaatccagttcatcttgtgtgttactatcgctatatgagattttatccttcaggcagattcctttataagaattcatcacaaaaagtcaaagatgtcgcgaagtacctgaacttccgtgcctcaaaagctgattgtgtttttaaggggaattacacactatcagaggataaagttgaagctgctcttttgtaccctggaacgcgtccaactgtgttgaggttccgcttaaggttgaggggtacaacccaaggtgctaataacagaatggatctacttgctcttcttacaagtggcgtgaatgataatgaggttaatggcccggatgaagacattcttggggttgtcgagaggtgggaagaggatgaaacacataacccagatgttccagcaatttcacacaagaggggtctaaccccttttgtctttgtttcatttgaggaggtggaaacttcagttctaaatctcccagtggaaaaaatggattattatgttcctggttaagaactggatcaaacagacaatccattggttgtattgtaaatatgtaatattgttgtttgtaactcttttatttttggcatcttagaatcggaaagttttcaatttgttgtgaacaggaaacggtctctctacctccacaaggtagtggtaaggtctgcgttcaccctccttatacttcacttgtgggacttgtgggatttcactgggtatgttgtcgtaacaagttcctatcgaacaatgaaagaccagtataataccggtctctgtgtgtgcattgtatggcagtttgaatatgttccaagttggaatctgtttgataataaagggagaaaaataatcattgtattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="74023" stop="64814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73734" g_stop="73670" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="73" r_length="61" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72711" g_stop="72625" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="160" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166">
            <donor d_prob="0.899" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72458" g_stop="72346" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="273" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70819" g_stop="70703" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="390" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70618" g_stop="70522" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="487" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69582" g_stop="69509" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="561" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67822" g_stop="67769" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="615" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100">
            <donor d_prob="0.438" d_score="0.96"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67668" g_stop="67567" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="717" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67385" g_stop="67327" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="776" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66416" g_stop="66206" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="987" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="65507" g_stop="65088" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="988" r_stop="1402" r_length="415" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M6680" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>1399</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73734" e_stop="73670"/>
          <exon e_start="72711" e_stop="72625"/>
          <exon e_start="72458" e_stop="72346"/>
          <exon e_start="70819" e_stop="70703"/>
          <exon e_start="70618" e_stop="70522"/>
          <exon e_start="69582" e_stop="69509"/>
          <exon e_start="67822" e_stop="67769"/>
          <exon e_start="67668" e_stop="67567"/>
          <exon e_start="67385" e_stop="67327"/>
          <exon e_start="66416" e_stop="66206"/>
          <exon e_start="65507" e_stop="65088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAGGTGAGCTATGAAATTCTCCAAAATGTGAACTTTTTTCTCTCTATTGTGTTCTAGAATTGGTTTTTACCTTCTGTGTATTTGTAAATTTAAATTCTTTGGTTGGAATCTTTCTTGGGTTTTGGGATATGGAAAGGGTTGTGTATGATTGAGAAGGAGTTGTATTGTAAGAAAGTTCAAATTTTTGGTTGGATTTTACTGGGATTTCATTAATTTCAGGGAGAAGTGAAAAAAATTGAATCTTTGTTTTAATATATGTGTTTTGTAGTGGTTGTTGCTTATTTGTATGTTCTTTTCAGCTTTTGTTTTATCGTATAGTGTATTGTTTTGTGTTCAATGGAGCTGATATAAAGCATGGTAGACAGGGTTTATATTACCAATAATGCTAGGTGATTAGTAGGTACGCAATGGATTAGTCACGGTGCGAAGGACCCCGGTTACTATTTTTAAGGAAAAAGGAGAAGATAATTGGGTCTGTTCATATCCAAATCTTTCATAGATAAAAGATTAGACTCGTCACTCGTCTATATTTTAGCTGGTCTGCAGTTAGATGAATCTTTCTGTTCTGCAGTCATTGCTAGTTTGAGAAGTTGGAACTACTGATTCAAGAGTGATTTTATGCAACTTGCCCGTTCTGTTGCAATAGTTTTCATTTATTGTAGGTTTGTTAGCTTGATCTTATTATCTTTTTAACTCATTGAGTAATGGAAGTATTTATTTCCAAATTATGTATCTATCTATCTATATATATGCATCTTTTTTGTCAATCTCTGTGTTTTTTGTCTCAGTTTACTGGTTTATGAATAAATCTGATTAGTCTTGTCAACTGGACATTGATCAGCTTTCGGACTTTTCTTCCTTGAGTTAATTTCAGAACTACAAATTGCCGCTTTTTGGTGTTTTCATGTTCTTCTTGTTCTGTATTTGTCATTATTTATTGATGATGGCTCATATCTTGCAGATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTGGTATTTTTCAAGCACTTTGTCATTGCTTACTTCAATTACCTTGCTCCTAGCAATTTGCTGCATAAAAGATTCATCATTTCTTGGATTCTTTATATTGACATTTGGTTTTGATGATGGAATTTTGTGGAACAGACTATTGTCAATTCAACTGCCTTTTTTCTTTCAGATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAGGTATGCCTTTGTGGATTTCAATTAATTTCCTCTGTAATTTTCTGATCAACATGTAAATATGTGGCAAGTGTTGGAAATGCTTTGTTACGATAGGAAGCTGAAGCATATTGATAAGACTTACAACAGAGCTGATTTTGCTAAACCAATTAATTGGTATCCAAAGTATGAACAATGTTTTTCTATAAATCAAAAGAAAATATTAACCAGAAAGTAAGGTATTTGTGGCTGTTTTGGGTTACATGTATATTTATGGTGAGGCGATATCTAACTACCCCCCTAAGAACAACTTTAATTTCATGCACATGCAAGAAGTTAGTGGATTCTACGTGGACACAAGCGTTGCTATTTTAACATCTACCTTGAGCCTTTTTCCCCTTCAATTCTTCTGAGGAGCATCCTTGGTAGCAAAGTTGGATGTCATCTCTGTCTTCTTCACAGACGAGGAACGTTGGACTCTATGATCTCATTACAGTAATCAAGTTGAGCTTTGCAACCAAGCTTAAATGTGACTGTTCCCTTTGATTCTTTCTCTGGATGGTTAGCTGGTTTTCACTGAGAATTTATTGGATTAGTCTTTAATATACTCCCACCTAGGGGTGTTTGTGGTTTGGTTTGGATCGGATATTGGTTAAAACCAAAACCAAACCAATCTAGTCGGGTTTTTAAATTTCTAAAACCAAACCAAACCAAATGAAAAAAATAACTATCGGTTTGGTTATTGACGGTTTGGTTCGGTTTTTCTGCATTTTTTCGGTTTGAAAGTAATAAATTTTTTAGGACATATGTATCTTGATTTAAAAAACATCTAGTACATGAATAATCCACAAGAGAGCTATTGTTGGTTCAATTAAGCAATTAAGCAATACTAGAGTTATCATTACCCGAACAAAGTTATTAAATTAAGAGAAAGTGTGTGACTATCTTATGAAAGGTATGGTAGGGAATAAATTTTGATGGAATTGGACTTAGGATTGTAATTAAGCTAAAATTTAAGTGTTAGGCTTGAGAAAATTGTAAACTTAAAGACTTAAGTTACTTAAAATTTAACACAGTATTTATATTTATTTATAAATAATATATAAATAATTATAAAATTTAAATTTCTAATTTATCGGTTTGGTTTGGTTATTTTTGCAGTTGTTTTTTTAGTAAAACCAAAACGAAACCAAACAGTATCGGTTTTCAAAATTTAAAAACCAAACCTAACCAAATCAAACCAAATATCGGGTTTTTTAATCGGTTTGGTTCGAATTACGGTTCGAATTGGTTGGTTAACCATAACCATGAACAGCCCTACTCCCACCCCATCTCTCTCCGGAGTTCTTTCTGTTTCCTTCCAATGGGTGAATTGAGGTTGCATATCTAGAGAACTGAAGGCAATCAAATGTAATGTCTTGATGTCTGCTTGAGAAAAATTATGCTGTTTCTAGATTGAAATTTAGCTTTTGCAGCCTTCCGTTCTAATCTTTATAGCTAAGGTGAGGGAACCGGAAACTTACTATCACTTCATGATTAATGTTGTGCAGATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAGGTACCAGGGACACTGGTTCTGGTTGTTCTATCGCGACTAGTGAGCTTTGTAAGTATCATTGACCATTGTGCCTCATTTTTGAAGGTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATGGTAAGATATAGTTTTTGATGAAGATGGTAAAATATTGCAATTACTTCGAAAAGTACTATAGTTACACCTGTTTCTATGACAAGAAGTTCCTTATTAATACCAAAAAAAATATCCTTATTAATTGTAAAATTCTTAAGGTAAGTTTTTATATCGGGAGGGAGAGAAGGCAGACGTGAGGGCATGTATAGGTGTTGGCTACTTCTTCTCGTTCGACATTGCAATAATATGGATTCTAATTCTTGATTTTGGTGACAAATGAAATGGACTTTTCTCAAGAAACTTGTGTGCCAATACTTTTAACTTCCATTTTTTACTTTTTGAATAGATAGGCGATCACGTATTGTAATTTCTTGGCTTTTCGTTATTACAATGCCAGATTTGATTATCCTCGAATCATTTCTGTTATTTGGTCATTGGATTAATACGAATTTTTTCTGTATTCAGGAAGAACCTCTAAGTTCTCAAGTTTTATGCCCTAATTGGTGCATCTGGAAAAAACAGTATTTGTTGATTGACATAGCTTTTCTATTAAATAAGAGTTGATAGTTGTTGAGCAAGCAAAAACAAGAGTTAAAAGTTGCTGATTTTCACCATTGTGAAAGTTTTGGTTGCTCCTAGTAGTATCATTAGAATTTTACTACTGAGCATTCAATATTTTGAAAGCTGGGGATTTTAAGTTTTTTCACGAAGTGTCTTAAAGCTGGGTATAGTGTATTTGGTAGGGATGTATGATTGTATTTTCCAAAATAGATTTCTCTGTGGACCACATACCAAGGTATTTGTCTTGGATTTACTTACGCCATCTGAGCCGGAGAACTAATTTTTTCCCATCTGGATGTTTTTGCCGTAGCCTGTAAAAAATTTGGATTATTTGTATCCATAAGTCTAAGTTGAAATATTTGAAGGTAGTAAGAAGTCTTAATTTATTTTTTTCTGCAGGTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTTGTATGTGTATTCTTATCCTCCACATAGTTAAACTTGTGACATCTTGGATGCATGTTTAGAGATAAGCTGTGCTGGCAAATGCTGCATAGTGCTTGTAGGAGAATGCAAATTATGCAATATGCTAATTCATCTTTTGCGTTGTATATTTCATGACGGAAGATAGTTCAGAAAAAATGACAAATTAGACAAATGTGACATCCTCTTTTCCTTAGGATAAGAGGTAACTTGTTCAACAGTGCCAGAGCTTTGTACCTTATTTATCGTGAAGGTTTTTGATCGGTTGGACCTTTGTTATACTCCCTTCCCCAAAAGAAGAAAAAGGAAAGGTCCTTTAGTATGGTTTGAATATGTAGATGCGAGATGTTATCTTTGAGGGAATCAATTTTTAATCATCGGTTGTAAATTATTGAAGATATTCTAATCAAGAAAAATATTTTACACCAACTGCAAAGAAGGAGTATGCATCTTTTAATGACAAAGATCGTTTTCCTGTACAACTACCCTTTTCTTTCTTTAGATCACATTTTTGAGGGGGTTGGGAGAGGGTGTTAAACAAGTGCTACTTATGGGGGTTGAACTTTTCCCCTATTTGGTGGAAGGTTGTGTGCACTCACCAAGTGAAGCTTCACATATACAAAGGAAGGTGAGGGTATATATGTGGATGCTAAGGGTGCTCTACGAATATCATGTATACTAAAACTATTTCTGCTACCAGCATTGCTAACATCCTTAACAAACCTTACTACTCAGAACGCCTTCAAATGAGAGACCCTTGCTTTATTTCCCACCTTCTTGTTAATATCTTGTGCCACTACCCTCTTTATCCAACCAAATATCATGACCCGCATTTAGGGATTCATGACCGGCACCAGGCACCTGACTAACTACCCTTATCAAGCAAACCACTAAACTAACAACTGGTTAACTTCGCAAACATATGAAAATACTGTAGAACTGGAAATTAAAGTCAAACATACTGCATAGAACTGAAATATCTTAGTATAAGTCTCAACTGTAGAGTGTAAAACAAACCATACTACAAACTGGCCAAGTCAAACTAGTCATGAGCCATCTAGAAAAAACACAACTGTTACATAGGTCCATGGGTCATACCTCAAAATAAAGGAAAGACTATAAAAGCAGATTGAAACTCTTACGCAAAGATGAATGGAAGATGTTGATGGGGGATGCCAGATTTAGCTGGTGATACGGAGCTTAGAGGTACCTGTCGCTGCACCCAAAAAATTAAGCAGCGAGTTGTAGCCACAATACTCAGCAAGTATCTGTGATAGCCTACAGAGCGGTGGAACAAGATTTAAATAAAACATGAGATGCACGAGTAGCAGAAATACGTTTTCATCGGAAAATTGATACTGAAAATTGAAAGCTGTAAAAGCATGGGATGCAGCTAAACAGTGCAAATAGACTTGCTCTGCCGGGGACTCCAGAAAACAGCAAGTTGTGGGGTACTGCAAGAAGACCTGTTCTGCTTGAGAGAGGATGTTTCCCTCGTCTGAGAGAACTGATATAAGTTGTAGGCTATTGTAAACAGAGTTTGGATTCTAATCAGTATGACATCTTTGAGTTGTTCAGTTTCCTCCCATTGCTTCTTTTCTTCACTTTGCATCCTATAGCAATTAGTATCAATGGCATTTTATAACATTGTCATCTTCTCTTTGATTGTAGGTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAGGTAGTAATCATTTGTTGTTCAGCTCGTGTGGCATACTAGATCTTTGCACGTTGTTCTTGCTATACCTAGTTTATAACTATTGTAGATTTCTTTTAACTAGAATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAAGTAAGTCCAATTCTAATCTTCCTGTACAAGTCAATTTGTTTCTGGCAGCAATTTGGTTATATACGCTCAAATCAAAATAATGGTTCATTCCTCCTTGCTTAAGTTGATAATGCTTTTGGCGTTTAGTTGATATATGTGATGCTAATTTCGAACAGACAGCTCACTGCCTTCTCATTTGCAGGTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAGGTACTTGATCATGGAGATTATATTTGTATTTTGAGTTCTTATGCTCACCTCTTGTTTAATAAAACTATGGTTGAAGGTTTGGGTACTTTTCCCCTGGCGCCACAAGTCACCATATTAGTTGTTAAACTTCCATCCGAGCCAAACTAGCTTCTAAGCAAAAAATTAATAAAAATCCCCATCTTTTAAGAGTGCAAGGCCAAGCTATATATAAATGCTTAAGTATAAAGTTGAGGATCTTGGTGGGATTCAGTTCCGATTCTTGTAGGTTTTGTTCGGGGATTCGATAAGCTAATTCCTGTAGATGTATATTTTCCAGGTTGCCCACCTATAAACTCATATGAAGGCAACAGGCTATCTTTTCCGGATCCTATAAACTATTGTAAAAGTTTAGTCGTGCACTTTGAATAAATGTGCATGAAAGTCGCACCTTATTCCTTACTGCAAGCAATGCTGGCATTTTTTTGTCCTTGGGATAAATCATCTTGCAGGTTAATAAATGTAGTGTGCATAATTTGTGGTAGCTAGTTGCTGGAATTTCTCCTGTAGATGAAATGAACAATTAATACTTGCGTCATTCCATTGAGTAGTCTTAATAGGTCCCAAATCTTCTATTGTAGTAAACAAAATTCAAACTTAGTAAACATTCTGTTATTTTTCACTTGCAGATGACACTTGCTTTTTATTTCTATCAGTTATAGTAATTTATTGTCTATCCACTCACTATATTGCATGTAAAATTTGAATTATTTTTATCATATAAATATGTAGAGTTTGAATTATATGATAAACCTGAAGTTTGTGGAGTAGAGTGTAAGATATGTTCACAAACATGTAATGCAGATTACTCTAACTGGTATGATTTCTACATGGTACTGTGTTTAATTCATATGACATTTCACGTGTCCATTAGGTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAGGTGAGTTTATCTTTCACATTTGTGCGAAGGAGTCCCTTTTTTCACATCAAGCAAAAAGAAGATCCAGGTTCACATCTAACAATTAGTATTTGATTATTGAGGCAATTCTAATAGGTGACGAAATATTTTTATGATTGAACATGATGTAGTGTCTTCTAATTAACTTAAAAAGGGAGTAGTATCTCTAAATTCGAAGCTAGCTTAATATTCATGTATAATCTTGACACAGCGGATATAGGTCTATATACCAAATAAGTAAAAGAAAAATTGGCTAAAAGTCACTTAGCAGTTCTATCAGAAGATACAATAATATATGGTTTCTTCATTATTTAAACATCCAAATCAACTGCTGCAGGTATATGCTTTGAGTCATTCAGTGTTATCTCCATCTTGCTTGCGTACAGTGTCTCGCGATTTTTATCATTATGATTCATTGCTTACAATCTTTGATGTTTTTAGCTCCTCTCTATTCGATGCTATGAACCATGAGGCACCAAACCATCCTTCATTTTCCATCTGCTAGAATCAGTTTTTAATTTTTTCAGCCTTGACAAACGACCCATATTCTATCGCGTGATTACGCTAGAAGCAACTTCTCAATTTTTCTGTTTAATAAAGATTTCAGATATATCTTCTATCACTTGCACAATGACTGAACACTAACACTTTGCTTCTTATCCTCTTTTTCCTGGATATAGGTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATT-G--G--TTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGC</genome_strand>
        <mrna_strand>AGTTTC-C---CTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGACTTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACGGTTGAGAGCTTCTCAGTTCATTTTTCCTCAAAGGCCATGGCTTG......................................................................................................................................................................ATTTGTATGGGATCAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGTAGCAAGCAGTTTGTTGATCCTGCATTGATACACAGAGTGCTACCTGATGAACTGCTTTTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTCAAAAACAACCCCATACACCTTGGGTAGGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG....................................................................................GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCAGTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAGTAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTACTATCGCTATATGAGATTTTATCCTTCAGGCAGATTCCTTTATAAG....................................................................................................AATTCATCACAAAAAGTCAAAGATGTCGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACACTATCAGAGGATAAA.....................................................................................................................................................................................GTTGAAGCTGCTCTTTTGTACCCTGGAACGCGTCCAACTGTGTTGAGGTTCCGCTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGGGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACCCCTTTTGTCTTTGTTTCATTTGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTATTGTAAATATGTAATATTGTTGTTTGTAACTCTTTTA-TTTT----TGGCATCTTAGAATCGGAAAGTTTTCAATTTGTTGTGAACAGGAAACGGTCTCTCTACCTCCACAAGGTAGTGGTAAGGTCTGCGTTCACCCTCCTTATACTTCACTTGTGGGACTTGTGGGATTTCACTGGGTA---TGTTGTCGT-AACAAGTTCCTATCGAACAATGAAAGACCAGTATAATACCGGTC-TCTGTGTGTGCATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGATAATAAAGGGAGAAAAATAATCATTGTATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6677" ref_strand="+" ref_description="SGN-M6677 C2_At1g21690 [cosii_markers]">
      <seq>agcactctgacaaaagaaagagaacagctatggcgccagttatgcagagctctcagccatgggtcgagaaatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttttatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatcagcttttcggacctgagctgtataaatcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgtacaaaaattaagaactttgctgctgttgctgtaggttctaatcggcaaagtggttatccttgcccaccttttaagatcataatccttgatgaagcagattcaatgactcaagatgctcaaaatgccttgcgacgaactatggagacatattcaaaagttacaagattcttcttcatttgtaattacatcagcaggatcatagagccacttgcttctagatgtgcgaagttcagattcaagccacttcctgaagaaataatgggcagccgaatattgcatatttgtaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97309" stop="88859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97009" g_stop="96937" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="152" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="232" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95475" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="352" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94767" g_stop="94698" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="422" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94632" g_stop="94559" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="496" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="89255" g_stop="89159" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="593" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M6677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97009" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95475"/>
          <exon e_start="94767" e_stop="94698"/>
          <exon e_start="94632" e_stop="94559"/>
          <exon e_start="89255" e_stop="89159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAGGTATACTTTTGTCTTGTCTAGCTCAGTTCTTAACTAAGTTGCTCGACTCAGGTGCGGGTATTCGAGAAGGATGCGAATCCGAGTATGAATACGGGTGCGGGGATACGGCTAAAAAATTTCAATATTATAAAAAAATAGTTATGAAGATATTAAAAAAAAATTCAGTTGGAAATATCGTGTATATATATATATATAGTACACTTATTTTAAGAAAAAAATAAACCCTTTTTCTGCTGGTTGATGTCCTTTTCAAGAAAAATTAAAAAGAACATGTACTTTTTCAAGAAAGATAAAAAAAGGGCTCTGTATTTCCTTTACTTGTTTCAAGAAAAAAACTCTCCGTTCTTCTCTTCTCTGTAAACTCTTCCTTCTCTTCTTTGTAGTTTTTCAACTTTCTCCTCTTTACGTCGCCGTCGCTGGAACTGTTTTTCTCTTCTTCTTTTCTCTGTACTTTTTCAAGCTTTGTCCTCTTTACGTCACCGCGTCACCGGAAATTGATTTTTTCTTCCCTAATCTTTTCTCAACTTCGGTCAAAGTGTTCGGATTGGATTGAATGAATTCGACACGCATCCCGCACCCGCACCAGAGTCGCGTCTAGACGGGTTCGCCTGCATATATGAAGAGTCCGCACAACATATGTTCTTAATGCATTTTAAGCCTCTCTTTTACTATAATGTTTAACAACATATCTTCCTTACTCATTTCAGTGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAAGTGAGTTGCCTTTCTCGTTTTTACTAATAAACTACATAAATTTGATCTAACACCTGGATTTGCAGAATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAGGTTTATTATCATTCTGCCTTTTTTTCTAATTTATCTTATTTCGATTTCCTTTGCTCTTCGTAGAGGTTTGTTTGTAAATAACAACACATTAACTGATTGTTTTCCTACGTAAATTGATTATTCTGCCCTTGGAAATCAGCTTTACTGTTTCTGTTGAACTCGTTTTTGTTGATGGAAGAAAATCAAATATAAAGAATGGTTGTATATTCTACGTTCTGCAACTGTAGAATTGGCGTCGGGATTGCCAAACTCTTAAATAATTCTGGAATCTGATTTAAGCCTTCTTGTCAGTTCCATATAACAAGTAGATCGGAGTTTTATCTTTAAATGATCCTTGAATAGTTGTGGTGAAACTCAATTAAGTTTTGCTCTTTTAAGTTTTTGCTATTTGCCCCCCTTTTCTCTTCTAGGTATAGGACAGCTGAAACAAGCTCAGTGATGGAAGTCGATTATGTGGCTAATTGGAAGTAGTGCTTCATTTCAGACTTATCTGTCCATGAAATCAACCTTGTATTTTCACTTGAAATGCATGTCGCCTATTTACAACATTTAATGAAATTATTTTGCAAACAAAACTTGGCTGATCCTTTTTTTGGTTTATTTGTTTGGGGCATCCTGGTGTGAGAATTACTGGAGACATTAAATAGTTTAACTATGATATGAATATTGGTGAATAAGTGCCAATTTACATGTGCAATTGGTTTCATCCACTCTCTTTGGTTTACTTATTTGTGCCTTTGGCTTGCTTTTTATTCAGTTTGATCTCTTTTAAGCTGTTTGAATGGTATGCGTGAAAATATTTTGGAGTAGGAACAAAATTGTTTCACTCTAAAGATATGATAATTTTACCATGATGAATCTGAGATATTAAGGGCTAGTTATGACATTGTTTTCTATTCTATGGTATTATAGAGCACCATTATGTGTAGGAGAGGTAAACTCATTAATCATAGGTAGTGCAACCAAAGACCACTTTTTGGGCTTGAGTCGGTGAGTATTTTGGAGATGATTTTGTACACTCGACCAATTAGGCTAATGGGTCTGAGGTCAGTGAGCTCCTTAGCTCCCATTTTTTTTGAAATTAAAGCCAGATAGGTAGAGTTGAAGCTTTTCTCAAAGACGCACCTCTCATGAAAGTTCTTGACTGTGGCGATCACATCTTTTCCAATAACCTCCCAACAATGGGTATAGAAGGCCATGGTAAAACCATCAGGAGCAGGAGCTTTGTCACTAGCACAAAGTTTGACACTATCCTTATCTCTTGATCCTCAAATTCCTTCTAAAGCATGAAATTATCTTCAGCATTAATTTTGTGATTCATCCTGCACCCACCTGAAGGTCTCCAAGTTTCTGATTCTGAATAAGTTCTAACAGAAAACTACAATTTCCTTCTTTATGTCTTTTGGATTCCTGAATACTTCACCCCCCACATTTAGCTCATCAATATTGTTGTATCTTCTGTGTAAGTTGGTGCGCGAGTTGGCAGTTTTGTGGGAGAACTTGGTGTTGTTGTTGCCCTGTTTTAGCCAACTAACCCTTGATCTCTGTCTCCATGCAATCTCCAAACTCTTAACAGAAGCTTAGCTTTTGAGTGGATCTCCTCTTCCCCAAGAGCTCTTTGATCCTGGACTTCCTCAAATTCAGCAAATTGATTGACTATGTTCTCTTTCTGTAATGCCAAATTTCCTTGTGCTGATTTGCTACACTCTCTCAACTCAATTTTAAGTGTTTTCAGCTGAAAGGCTAAGATGAAATCTGGCCTTCCTTCACAGTCAAAGGACCTCCACCATTCCTTGATTCTATCTAAAAAACCCTCAGTCTGCAGCCACCAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCGAAACCATCAGTCTGCAGCCACTAATTTTCGAATTTAAAATAGGACCTCACAGGCTACCAATTCCCACATTGTATTAGAATTGGTGAGTGATCAGAAGTGACCTTTTGCAGGATTGATTGCTTGTTATTTTTGAAGCCTCCATTCCACTCATCAGACACTAGAAACCTATCTAGCCTAGCTGCAATTTCATGTTCCCCCATGTGTAACTTCTTACTGCTAATTGAAGGTCCAACAAGCTCATATCTTCAATGAAATCAGGGAGGTCAGACATCAATTTTGTGATTCTTGAACAATTTTTCTTCTCAGAGAGGAATCTAACTGTGTTGAGATCCCCACAAACTACCCAAGGGCCGTTGAACAGGCCTCTAGCTGACCCAACTTCCCACAAATCTTCTTCTCTTTCTTCTCTACTATTTGGAGCATAGATGCCAATAAGTACTGGTGAAGTCAAGACTTTTACCTATGAACTTGCAGGATATAGAGCATGCTTCCACACTGCTAACCTGCCCTGTCCAAACCTTCCCGTCCCAAATAATTAGGATGTCCCCGCTAGTACCACGAGCTTCAAGTTGACAAAATTCCACTCCTCAGTTTGCCCATAAATCTTTAATAATGTTTCTCACATCCCCTATAATCTTGGTCTCTTGGAAGCAATAAACATCAGCCTTCCACCCTTGGATAGATTCTTGATTACACACCTCTTATTTGCCTGATTCAGGCTTCTCCATTCCATGAAATTATCTTGACTGTCATTTATCACTAGCTAATGTTTAACCCTCCCTGCTTCTGGTACCATTATTTCTGAAGTTGCTCCCACATCCTAGGCTCTTAAGTTCTTTTGAGCCTTTAACTACTGAAGTTGAATTCAAGTTCTTCCCACCCAGTCAGTGTTATTCTGTCTCATACTATTGATCTTCATAAACAACCTCGTAGCTTCCTCTTTGCATCCCTTAGTGTTTACTCCGAAATCCTTTGCTAATTTTATGTTCTGATAGATCCAAATCGGAACGTCAAGCTCTGAATCATCTTCTTCCTCTGGACTACGTGGTTTAAAGGAACTACATCTTCAATTATTGTCAAAGAGTAGTTCTCTTCACCTCTCTGTGAATCAAGTTTTTGAAAGCAATAGTTTTCCAAATGCAGAATGAGAATCAGGAAGGTCTGGGCACTTGTTTGACACTTCCACTGTTTCTCTATCAACATTATCTTCTGTATCAGCTTCCTTCTCCATCGCATTTTCTTCCAGTTCTGTTCCTTCTATTTTTTTTGCACCTTGAAGCTGATGGAGGAATAGAAGTGGCTTCAAGTTCCGCAGTGATTGGCTCATTTAGCTGAGAGAAGGAGTTTTCAATGAGAGGCCCACTTAAAATGAATTGTGCCAGCAGATCCGGGCCCATTTTTTCGCCCTATCTTACATATTTGGATTTCTTAGGAATCGAATTGTTGAACGGTACAAAGGTTCACGTGCTGGTACAGCAGGTTGTTTCAAAATTGCTGGATCCTACGAGGAATCCACGTGTGCAGAAACCTCTGTAAAGCTTAAAAGGCTCTCATCCCCTCTATGTCCAATCAATCTTTGGACCTGGTTGTTAGGGACAACTGGAATTCTCTCATCGGTAACCACCCTCGCAGATGTTTCCACCCAAATCTTAACTTTGAAAGTCAAACCCTCATGAACCAGCTGTGCTGAATAAGGGACAAAATAGCCATCACCTCTCACCTTTAACCTCGCCCATTCAAGTGATTACAAAGCTCCGTCTCTTCTTCAGTTTGAATCCAACCTCCACAGAAATTCCCGATCTCCCGGAAGACTTTCTTGGACCAAAGTTGGAGGGGTAAACCCACTATCCTGATCCAAATCTGATCCGGCTTTTCATGGATGGAGTTCGAAGTCGGCGACCACCTTGAAGATTGAACTTGTGTGTTTTCCAGAACCATTTTCCTCTTACTATGTGTTCTGCAACAGTTTTATTGGGGAGTTCAAATAAAAATCAATTATTCCCCAAGTCATAGATATTGATGCCATGATGATGTCTCCAGGTACTCCCAACCCATCTATGAATCTCCGACAAAATGATATCTGGGATCTCCTCCGGCAGAGTTACACTCTTAGCTAGTATGTCATACTGGGTTTTTGGTATGGCATCTGTAATAACCAGCAAATTTCCTTTTTGTTGTATCTTGGCATCAGTAAAGTCTCTTGTAGTCCATTTATTACTTCTGACAGTATCGAATATGATAGGCCCTCTGTTTCCCTGTGTGTTGTATTAACTGTTCTCTGAACCTTAACATTGATAAAAATTGATAATTTGCAATTCCATCCATCCGGAATTTTGAGACCACTCCGGGATGATGATCACTGCTCTTCTCCTACCCTGCATGTTAATGATGCTGATGTATCGACCATATTTGTTGAAATTTCTTGAGCAAAAGAATTCTGAAAAAAGATCCTTTAACTTCCAGCTGCGAACTGAGTTCCCTTGTCCTTGTGAAGCTTCTTTAAGAGCGTAAATCAACCATTCCATGTCTTCTGGTTAAAGCTCATCCTTGTTATCTCGTTACGGCCTCTTTCTATCCAGTCATACCATGTATCTGTTGTAGGCCTACCGCGAAAAAAATGGTGTCCACTCCCATGAGAGAGTGCCGGTGACCTGTGAAGCGATTGGCGTCCCACGCGATAGGCGTGTGAGGCGCGTGGCGTCGGTGTCTGATGGAGAAAGGAGGCGCGTGGGAGCGCATGAGGTGTTTTTTGAGGATGGGTATTTTTGGGGTAGGGTCGGAATAGGGTGAAGGAGGTTGTGATGGAGGCAATTGGAAGAAGGAGAAAGAGAGATGGAATTCCGGTGGTCAGAAGGACCACCGGATAGGTTTTCTGGGTAGTGAGAGGATTTTAAAAGTTACATCGGGATTAGTGCCTGGGAGAATTAAAAAAGTAGAACATCCTGCTATATTGTGCACATTTTGTGGTTAACTTAAAAGATCTTTCAAGCTTTCTGCTGAATGTGCTTAAGGTGGAGTAGGGAAGATAATGATAAATATATTGTGAGAAATTGTATTGAAGGCTCAATGCTCTTCACTGGCTTATACCTTCTGGCCTTGTCACATCTTCCCTTCCTCAGAATGTTTTTTATTTCCTTTTCCATCTTTATGCTCAAGTCATTGTGTACTAACACTATGGTATTTGATCTTTTTTTCAAAAGAACCTATGGACACACAAATAAGTTTGACTTGATCATTTATTCATCTACATGATATAAGGTGGTTACATGACTATATGATATTTTCCCCGAGACAAAAGAAAAAGACTTCCTCTGGCATGCTGTTTGTTTTTTGTTTTCTTGTAAGTAAGCCATTTTCTTTGATTACGTGATAGGTTATTGATCTAAGTACGTTTTTTTCAGAACATTAATAAATTGAATAATCTTCTTTGGTTTAGGATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</genome_strand>
        <mrna_strand>AGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA.................................................................AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6677-2" ref_strand="+" ref_description="SGN-M6677-2 C2_At1g21690-2 [cosii_markers]">
      <seq>attttcccgtttcttcttcttcctctccaagcgggaaacagcactctgagaaaacaaagagaacagctatggcgccagttatgcaaagctctcagccatgggtcgagaaatatcgaccgaagaaagtgaaggatgtagctcaccaggatgaggtcgttcgagtcctcaccaacactctcgagacctctaactgcccgcatatgctgttttatggtcctcctggaactggaaagacgaccactgctcttgccattgcccatcagctttttggacctgagctgtataagtcgagggtattggagctaaatgctagtgatgaccgtggtatcaatgtagttcgcacaaaaattaagaactttgctgctgttgctgtaggttctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97353" stop="95182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97053" g_stop="96937" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="191" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.923" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96541" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="271" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95594" g_stop="95482" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="384" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M6677-2" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6677-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97053" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96541"/>
          <exon e_start="95594" e_stop="95482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGGGTATGTTTTTAAGTTGTGTGTGGATTTTACTTGGGGTTCTCCCTAGTTGATGTTAACTTTTTTTGAACTGGTAACATTCCTAGTGGATGTCAATTTCATTTAGAAATTGGTAGTTTTGGGGGAGTTGATTATGTATAAGTTTCTATTGATGTGATTCCTGAAAATCAATATCTATTTTAGTAAAAATAGAAGTGTTTTTATATGTTAATTTCATGGGAATTTGTAGTTCGGTGGAATTGATTATGAATAAGTCTGTATAAATATGATTCCTGAAAATCCCTTTCTGCCTTTCAGTTGCCTAATGACCTATAATGCTAGTCGCTATCCAATTGGGGCTAGGAGTTTCTATCTTACACTGTTTCTAGTTTAGCAAAGAAAAGTAATTTCGTTCTTCTGCGAAAAGTTGATTCGAAATTCAAGTGTGAAGAGGAATAAGACTTGAACTTTTGAAAAAAGTTTACTACTTCTGGAGCAATTTAAATCCTCCTTTTGTTTTAAAAGAATGATATTGAGTAATAACGGAACTTTGGGACATCTGTTTTCTTTACATTCTTTTTATTCTTGAAATTGAGAGGACTTATAGTCTTAAACAGCAAGCTGCAGCTCTGCCTTGCTTCAAATTTTGGTGTCTTGACCTAGGACTTATGGCGATTCTTCTGGATGCTGCTAGTTTGGTGTCTTGACCTAGTCATGTTTCTACATACACGTTCTCTGTATGATTCATAGACAGACAACTAAGATCGTGTTGTTAAATGCATTTGGATAAGAAAATGTATTTACTTCCTTGATTCTATGTTCATATGTTGTTTAGGATTCTCTCTGACAAAAGAGAAATCATATCATCAAACTTGGGCCTTGTTAGTTTCTGCTGTTTGATTGTTACCTTTTGCCTACCTTACTTTCTGTATGTATATATTTCATCTTCCAATGATTTCTTCTTTAACAGACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATC</genome_strand>
        <mrna_strand>ATTTTCCCGTTTCTTCTTCTTCCTCTCCAAGCGGG--A-A--ACAGCACTCTGAGAAAACAAAGAGAACAGCTATGGCGCCAGTTATGCAAAGCTCTCAGCCATGGGTCGAGAAATA...........................................................................TCGACCGAAGAAAGTGAAGGATGTAGCTCACCAGGATGAGGTCGTTCGAGTCCTCACCAACACTCTCGAGACCTCTAAC..................................................................................................................................................................TGCCCGCATATGCTGTTTTATGGTCCTCCTGGAACTGGAAAGACGACCACTGCTCTTGCCATTGCCCATCAGCTTTTTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGAGCTGTATAAGTCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGCACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1806" ref_strand="+" ref_description="SGN-M1806 T1161 [cos_markers]">
      <seq>aatatcgaccgaagcaagtgaaggatgtagctcaccaggatgaagtcgttcgagtcctcaccaacactctcgagacttctaactgcccgcatatgttgttatatggtcctcctggaactggaaagacaaccactgctcttgccattgcccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="97161" stop="96251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96940" g_stop="96937" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75">
            <donor d_prob="0.914" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96861" g_stop="96783" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="83" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96551" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="153" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M1806" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96940" e_stop="96937"/>
          <exon e_start="96861" e_stop="96783"/>
          <exon e_start="96620" e_stop="96551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGTAACCTTCCAATTAACTTAGCTCCTCTTTTCTAGCTCTCAGCCATGGAAATGTAACTTTTGGAAATTTTTGCAGTCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAACGTAAACCATCACTTTCATTTGATTGATTTACTGCTAAGCACATTAAACACTTACTGCCTAGGGTTTTCTTTAATTTCCTGTTGAGAATACAGAATTCAGCATTCTTTACGTGAAGAAACAAACATCAGTACTAAGTTATTATCATTTTTTTATTTGTTATAGTGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</genome_strand>
        <mrna_strand>AATA...........................................................................TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC..................................................................................................................................................................TGCCCGCATATGTTGTTATATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8649" ref_strand="+" ref_description="SGN-M8649 C2_At5g11470 [cosii_markers]">
      <seq>cttttccctccatttgattgtcacgtctgcggcggttttcctgggactagggtaaagggaggaggatattaatataacaaaactcgacagtgaatgaatgagcttacctatgcccagagataagatatctttgtcgggattgctccaaattgaaggcgcttttagggtttcggttaaacattgttcaagctgcgcatcttcgtggaagcagtcattataggattctcaagggctgaatccgtgtggtaaaagtagaggccttgacagaaagaggaagcaggtctgtgagtggagacagttatggctttggtagaagcagttaaagtagagcctctagcggttctagataaggatgaggaagttgaatttgtctggggtagaaagagaggtattggtggtaagagaaaggaggtgcagttttatgaatcttttacctatgatggtgtggagtatgctttatatgactgtgtatacatgcacaaggaaggtgaacttccttacattggtaagatcataaagatatgggaaaatccagacaagtctaggaagataaagatccactggttttttcggtcaacagagatcttgtatcacctgaaagatataaaggtagctgagaatgaagtatttcttgcctctggtgaaggcacaggtttggccaatgttaatcctttggaagctattgctggcagatgcaatgttatctgcacttcagaggacaacagaaatccgcaaccatcagatgaagaagtaaaaatggctgactatgttttctaccgtgcttttgatgttggaacttgtgcaattttggataagatgattgacaaagttggtgggctggatgtcaagtatgtttttaacaggaaagagagtgaaaaggccagtcatgtcctcaaacttgcttctgacaagaaagataacaaaactgctgtggaatatcgagctaatggggagtcctttgggctaaaaccacagaatcatcttggtgctgccaaactgagtcatttacttggaaaaagtgatgtagatggacaaaattctctggttagacaggatgccgtaccgagagatacaaatgtttcacgtgttaatcaggaaactgccaaggaagtgaattctgtccctggtgagaaaaactcacatgatttgggagttgcaaaagctgctggtaaatcaagtcatttagtgggaagaaatgatgtagatgcgcaaagttcacctattagagaggatgccttacatggagatgcaaatgattctcacaatgagcagcaatcaacaatgaaaggaaatgccgcgccggtgctggttgttaacagcaaaatagccactacagctgttcacaaccaaaatacttcaagtgaagaaaatgcactctacacggttaagaatgataaaaaagttaatacgctttcaatagaactcgtagtagctggtgaaagaggaaaaccttcgaaggatcttggcattttggacgataggccttcaaaacgaataaaagtaaatggttctgtgacactatcagaggacaagggtggggacaatgtacagaagtccactgtttgcacaaatgacaaagaggttatgggaacaggtgctactccttctgaagaaaaaaagaaatctggagacagtaagctttctggtggactggacaagaacatgcagaacagaaaggatggtgctgccttggatatcacacctcccaagagggcaaacatacactctcttaaagctaaagacgatagagatagaagtaacatgtcaatacgtaagcctgttgacaatataggcaagttgcctaagttatctgctggaatatcccccaaggaacttgagaggatgggaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="135964" stop="127505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135664" g_stop="135491" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.816"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135490" i_stop="135091" i_length="400">
            <donor d_prob="0.831" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="135090" g_stop="134620" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="675" r_length="492" r_score="0.864"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134619" i_stop="129096" i_length="5524">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129095" g_stop="128927" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="844" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128926" i_stop="128800" i_length="127">
            <donor d_prob="0.818" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128799" g_stop="127805" g_length="995"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="1851" r_length="1007" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M8649" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>1809</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135664" e_stop="135491"/>
          <exon e_start="135090" e_stop="134620"/>
          <exon e_start="129095" e_stop="128927"/>
          <exon e_start="128799" e_stop="127805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCCCTCCAATTGATTGTCACGTCTGCGGCGGTTTTCCTAAGACTAGGGTAAAGGGAGGACGATATTAATATCACAAAACTCGACAGTGAAT----GAGTTTACATATGCCCAGAGAT-----ATCTTCGTCGGGATTGCTCGAAATTGAAGGTGTTCTTAGGGTTTCGGTTGAACATTTGTAAGTCCCTTTGCACCGAATTAGAAAATAGGCTTTGAAGTAGAGTTATTACTTCGTTTGCTTTCCAGTATTTCCTTTTCAATGTTGGTATGACCTTGGTGAATGGACATGTCTGCTGGTTTAATGATGCATTGATTTTATTTCTAGATGTTTGTAAGCATGCACATTCTAGAATTTCTTATTTGTTTGTTTTGCCTGTTTAATTTTTATAATCATCACTCATGGACGGAATTATGATTAGCTTAAATTAATTTTGGAGTATTTAATTCTTGGAATATTTGTATATCTTTGGTCTGTTATGCATTTATGTGTATTAGATTTTACTGCCACATTATTTTAGTTGTTGCTACTCCATTAATATAACTAAAAATTAAGCCTTTTAATGTATTTTGCATTTCAGCTCAAGCTGGGCATCTTGGTGGAAGCAGTCATCATAGGATCCTCGAGGGCTGAATCCGTGTGGTAAAAGTAGA-G---T-----------G--G----TCTGTGAGTGGAGACAGTTATGGCTTTGGTAGAAGTTGGTAAAGAAGAGTCTCTAGTGGGTCTAGATAAGGATGAGGAAGTTGAATTTGTCTGGGGTAGAAAGAGAGGTATTGGTGGTAAGAGAAAGGAGGTGCAGTTTTATGAATCTTTTATCTATGATGGTGTGGAGTATACTTTATATGACTGTGTATACATGCACAAAGAAGGTGAACATCCTTACATTGGTAAGATCATAAAGATATGGGAAAATCCAGACAAGTCTAGGAAGGTAAAGATCCAGTGGTTTTTTCGGTCGACAGAGATCTTGTATCACCTGAAAGATGTAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGATTGGCCAATGTTAATCCTTTGGTGAGCGTCATAAAATTGCTTTATCTCATTGTGTTTTCTTTCTGTCTGCTTTTACCTTACATTAAAATAGAAATTAACTATGTAGAGTTACTTAAACCATATTGTTTTATGTATAGCATAAAAACTATCTTTTTAACCAACTGCTTATGGTTAGAGGAGTTCAATTTGTGTGCACATCTAATCCAATATATATCTATTTATTGTCCACCTCGTCAATGTTAGTAAAATTCACTCAGTTCTTGTGGAGACACTTCTGCTTATTTCTATTTGGTTTTGGTGGATCTTCAAAGGAAGCCGGGCTTCTTTTTGAGGTGATACAACACAAATTAACTTGAAACATATGTTATTATTGCTATCTTTGTGGTGGAAGACGAACAACCAGAAGGAAGCCTGAGATGATTTATTACTTGCTGATGATGACAAAGCAGATGAACCTGTAACAACAAGTACTTCTCTATGAAGTTTGTCTAAAATGAGAGATGGGAGAAGCTAGCAGATCGATCTGTCCTATATTCCTATTGAATGCCAATTCTGTCCCTCCTTGTTGCCGGTCTGCCTTTTTAGAAATTTATCCTTTTTATTGAGAGGCTACCTCTTTCTTAATTTTTTTTGTGTAGATCTTCTCGACCCAACAGAAGGAAGAAAAAAGGGAATGATAAGGTGGGTGGGTGTTGGTTTGAATAGGCAAGGGGCATTTAAAAGTTAAATATAGGATGAAAGGAGTAATTTTTTTATAAGCAAGTTCCTTCTTTTGCATGATTAGTGCAAAAGCATCAATGGCAGCCAAGTTGCCTCATTGTAATAGGAAATCATTGTTGAAAGTAAGGGAGTCAAAAAAATGAATGAAAGGAAAATGGAAGGGGAAACTTAGAAATAAAAGCTGGCGAGGGTTTTGATTAGGTTTGGGAACAAAGACAAGAATACAATTGATTCCTCTTTGCTATAAGATCTGGTTGGAGCTTTTCTTTTTACCCTAAGGGCGAGGTCTGATTAGGTTTGGGAACAAACTTACAAACGATAATTCAATAAATTTCTCTTTTTTGAGATCTTGCCGATTTTTTTTTGCCACAAGGGCATTGAAGGTTTTGGTAAGCACCTGTGCTTGCTAAATATACACGTAATAAGCTCCTTCAAAACGAGTGTGTACATAAATTCTGCCGACATGGACAAAATTAGGTGTTGCACGACCTCATCTCCACTCTTCAAATTCTTGTTGACTTCCATTGATTGTAGGTTCCACTTCTTTTTCTTCTTCACCATCACAAACAAAATTGTCACTTAAAGTAGAAACCTATCAAATCCAAATTCTTTTTTTTTTTGGGAATTGATACTTTTCAATTCATCTTCCTCTTTCTCCACCATTGCAAGCCTATAATTTCACATAAACCTATTCAAACCCCGCTGCTCATTTTTCCCCACCATTACACCCAAAAGATTGAGCCAACTAGCAAATCCAGTCTCTTTGTGATTAAAGCCAACTTGTCTCAAATTTCAAATGACCCATTTTCTGCTTGTTTCTTTCTCTTGTTGTGCGCTCTCACATCTCTTGAGACAATGAATGCCTATCCCAATGCTAGAAGATAAGTAAAAGATTTTCAAGGGCAACAGTGGCAGGAGATAAATGAAATGGACTAGGATTAAAAGAATGGGTTCTCAATTTTAGGTTCAAAAATGGTTTTACCATGATTGGTGATCAGAGCCAACATTGATGAGCGATGAGGTCGATTTCTCTGTTGGGATTGTTTCAAAACATTAAAGGTCATTTGGATAATTATTCAAGTGCATCTCTACCTTTCTGCAAGTTCCAATTTACAAGACTTAGAAAACAAAACAATAGCCAACAAAACTAATTCTCCATTGAAGTTTGTTTTAATGAGCATTAACCAAACAAAGAGTCTAACTAATAACTTCCTTACCGATGTAACTTCTATGAGACCACAATGTGAATGCATGTTTATTGTGTAAGTGCTAGGGAGAAAAACTTCCAAGTTGAGTTAGTTCTTTTTTCTATTAAATCCTTTTAATATGTATTCTTTATTGTTATTCGTGTTAATTTTGTTAGCCCATGGTACAAAGACTACACCTCCCTCTTGCTATTATAAAAGTTAACAAGAGAGTCGAGATTATACTATCACCAGTAGATAATTCTTGTGAAGTCACATAAATGCTTTTCATTTTCTTTTGGACATCATAATTTGACCAAGGGTAGTGGTGATAGGGCTTTTATTTTCGATTATTGAATGAGAAATCTACAACTCATTAGTGGAGTTGGAATGTATTAGATGACATGAACACGACAATTTGTAAACTTTCATGCTTTTAATATGCCTGATGTGCATGTGATTTTGCCATATCAACAATCTGAAAAGGAAAATATGCATGGTAAATGGCTAGAGGTATTATATGTGTAGTTTTGCATCTTTTGAACATCTTTTTAGTATATTTCACTTCATTAAAAAGTACTTATTATGTGTGGTTTTAACAAGTACAGATGTTAAACTGAACTTGCTATTGAAAGGGTGTTAACCTGGAACCTATTATTAAAAGAAGCATTAAACTAGGACGTAGAGAAGTGAAATCAGGAGTACACTTGCATATAAGGTTACAGTACAACCCATACCCATGCATTGTTTTGTGATATAATACAAAGTTACTAAGTTAAAAAAACAAAAAAGTGTTAAAACCAGAATAGGTCTTAAGTTAGGGGTTTGCTATTTTACGTGCAAGTTGGACTGTTAATTTGTGTAGAGTCTTTTTTATTCATTGGCGTTGTTGTCACCCCCAAGACATTTTTTTGAACTTCCTTTGTGACTTATTAATTGACCAACAAGATTTGAAGAAATGTAACTTTTCATATCTGACATGACTTTATTTAGTTAGAATTATGTCTTTTCGAGGTAGATTAACAACACACTCAGTGAAATTCCTCAAGCGGGGTTGGTGTTGAGAGGTGGAGTAATTAAGAAAGTTGGGTTCAACTTTATGAATGTGTCACTTCATTTAAGCTCACCCTAATCTTATATTATATGAAATAAAATAAAAAACAGTTAAGTTCTTTGTATTTTCTACTAGTAATGGAATATAAACTTCTAACATAAGTAGAACACCTTGGGCATCGTGGACACAGACATAATCAGAAAATCAGGCAAGGGAAGGGAACGATAGTGGTCTTTTGAAATGCCCACATAGGCGAGCAAAATCAATCTTGTACCCAACCATCAAACATGTCACCATCACCGCCCATTCTAAAGTCAAGTGGTTATCTGCCATGGCGGTGATAGTCAAGCACGTACAATAGACCACCAAAACATGGTCGGAAAATTCAATAAGGCCTTCTTGATCAGGGCTATATCGGGTACCCAATCGACATCAACACCTTGCTCGGTGATGTATCTTGGCACCCATTTGCGCAAATTTTCCTTTGAGACACATCCTTCATTGCATTTTTATTTTGGAATATCTGCATTAAATAATAAAACTCAGCAGTAAAGGCAATCTGTAGTAGGTTGGTATGTGGATGAACCCGTCGGTTGATACGCCTAAATTACACCTCCTAAAAGAAGAATAAGCGATTGTTCAAATGAATACCCTAACATAGGTTAGGGTTGATCTCACGAGGAATGAAGTCTAGACTAACCTAATTGATTATTAGATTATACATTTAGTCGAGTTATTTCCGTAACGGGGGGGGGGGTTGTAAAACAAAAGCTTGAGTTAATGATTGTAGTAACAAGGAAGCAGGAGATTGATTGGTTGTAAAATCAATAGAAGATAGGACATTTATGTTCTCCACAAGTTCATAACTGTAAGCCTTACAGTAGTAACCTTGTTTAGTGTCTAGCATGCAAAGTTAGTAAGTTAGGTATCTCTTAAGTAGCTGGTCCCCCAAATAATTGAATTTCACCACGCAACTTTGGTCAGTCTACGGGTGTATTCTTTAATAACCGTTACCCTTGAGCCTAGATTAGCTATCCATGGCCCGTTCAAGCTACTAGATGAGGCTTGGTAACATCAAATTTTATTGTATAATCTCTTTTTCATTCGTTACCCCTTTGGTCAGGTAAGTATCAATAATGCGAGTTCTGACGTAGGTCTTTGTTAAAAGGCAATCAAACTGAAGAGAGAAACAGTACATGCATAAACATTATCTAAGAATTACTTACTAGTCATTAGGTTTGCATTGTTAATTCCTCATGGTTCCCGCAACTCTAGTTGTGGATTTAGCTACTCATGCTTGGGTGATCACAATTCATATTAATTTTTTAAAGATAAATCATGCACTTACAATTAGAGTAGTTAAATTTCGGAATCTTGATTCATGAACAAAAGATGTAATAATAACCACCTATTCTAGAATTAAAATGCAGACGTATTCCACAATTTAATTCTCAAAACAAAGTATGATTTGTCTATCTTCAAAAAATAAATAAAAAATGACTATTTATAGACGTCTTATATCCTAAATAAAGTAGACTAAGAAAACATAGGAAAAAGTAGGATTCGGCAGTCGCTTCTACGGCTCGTACGAACCTTTCGTGGAACACAACTTCTTCAATATTCCTCTTGACTTACCTACGGACATATTTTACGACTCGTCGAACTTTGCACAACCCGTTCTGGCTGCTCGCTGTCCAAGTACTGAACTCCAACATCTTTGGTCTTTTCTACGCCTTGGACCTACGGCTCGTAGAAATTCCTATGGCTCGTAGTCCAGTCTCGTGGTCCCATATTTAGCTCCAAAAATCACCGGTCTCTTCTACGGCTCATACCTACGGCTCGTAGGTCAATTGACTCAATTCATCAAACCTCAAAATCTGTTGTTTCATTGTACTCTTCACCCCGACTTGCCAAAATCTATTTTCCTGCAAAACAAAGATAAAATACCATCAAATCTACTATCAAGTGCTTAAAAGACAGAGAAAACCTCAATTTTAAAGCATTTTAAGTACTGTAAATATGCAGTACATCAGAGACACATGTCACTCCCTAGACTCATGTAACTTTGCATACAACTACTTTGTGTGGTAATACTTTTTTCCTCAGTTTTAAATAAAATATGTGCTTTCATCAAAAGATAAGCTCTCATTGATTAAAAAAAGGTTGCAATCAGAGTGACATCTATGATTTTCATGACGATGTTCAGCCTGTTTGCGCACACCTCGAATTTACACTAGGTGCTTGCTTTTTTCCATTAGCATAGGTACTAGATAATTTATCTACCAAGGTGGGATGAAATCACCGACTGTTTTTTGCTTCCATGAGATATAAACATGATGGTTATTCACCTACTTCATTAATTACTTAGCCATTCCATTGGATGCAGAATTGTGGCCTATTTTTCTTCCCTAGTGGTATGTGAATTACGAAAGATATTTGTTCTGTTTGGTTGTCTTGTTAAGTGTTCTCTGTTTCTACTATGAGTCTGTCCCGAGTTTGCATATAGCCATTGTCAATATCACACGCTTAACTTGTAATTTATCATATGCCTTTGGCTGCTTAACTTCTTGTCGATTTACTTGACCAGGAAGCTATTGCTGGCAGATGTAATGTTATCTGCACTTCAGAGGACATCAGAAATCCGCAGCCATCAGATGAAGAAGTTAAATTGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATCGACAAAGTTGGTGGGCTGGACGGTATGTGCCTCAGCTCCCTGGGTGTCCTCTCTTTGTGGTGTCACTACAGTATAAATTCATTTTAATGGAATAATATAAAGCAGCTTAGATTAATCTCTCATGCAAATTTGTTTATGTTTTGGTACAGTCAAGTATGTTTTTAACAGGAAAGATAGTGAAAAGGCCAGTCATGTCCTCAAATTTGCTTCTGACAAGAAAGATAACAAAACTGCCATGGAATATCGAGCTAATGGGGAGTCCTCTGGGCTAAAACCACAGAATCA---------TGCCAAAGTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAGTTCTCTTGTTAGACAGGA---CGTACAGAGAGATACAAATGTTTCATCTGTTAATCAGGAAACTGTTAAGGAAGTGAATTATGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGTTGCTGGTAAATCAAGTCATTTAGTGGGAAGAAATGATGTAGATGCACAAAGTTCACCGATTAGAGAGGATGCCTTACATGGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGAGGTAACATGTCAATTGGTAAGCTTGTTGACAATATAGGCAAGTTGCCTAAATTATCTGCTGGAGTATCCCCCAAGGAAGTTGAGAGGATGGGTGGC</genome_strand>
        <mrna_strand>CTTTTCCCTCCATTTGATTGTCACGTCTGCGGCGGTTTTCCTGGGACTAGGGTAAAGGGAGGAGGATATTAATATAACAAAACTCGACAGTGAATGAATGAGCTTACCTATGCCCAGAGATAAGATATCTTTGTCGGGATTGCTCCAAATTGAAGGCGCTTTTAGGGTTTCGGTTAAACATTG................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGCTGCGCATCTTCGTGGAAGCAGTCATTATAGGATTCTCAAGGGCTGAATCCGTGTGGTAAAAGTAGAGGCCTTGACAGAAAGAGGAAGCAGGTCTGTGAGTGGAGACAGTTATGGCTTTGGTAGAAGCAGTTAAAGTAGAGCCTCTAGCGGTTCTAGATAAGGATGAGGAAGTTGAATTTGTCTGGGGTAGAAAGAGAGGTATTGGTGGTAAGAGAAAGGAGGTGCAGTTTTATGAATCTTTTACCTATGATGGTGTGGAGTATGCTTTATATGACTGTGTATACATGCACAAGGAAGGTGAACTTCCTTACATTGGTAAGATCATAAAGATATGGGAAAATCCAGACAAGTCTAGGAAGATAAAGATCCACTGGTTTTTTCGGTCAACAGAGATCTTGTATCACCTGAAAGATATAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGTTTGGCCAATGTTAATCCTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATTGCTGGCAGATGCAATGTTATCTGCACTTCAGAGGACAACAGAAATCCGCAACCATCAGATGAAGAAGTAAAAATGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATTGACAAAGTTGGTGGGCTGGATG...............................................................................................................................TCAAGTATGTTTTTAACAGGAAAGAGAGTGAAAAGGCCAGTCATGTCCTCAAACTTGCTTCTGACAAGAAAGATAACAAAACTGCTGTGGAATATCGAGCTAATGGGGAGTCCTTTGGGCTAAAACCACAGAATCATCTTGGTGCTGCCAAACTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAATTCTCTGGTTAGACAGGATGCCGTACCGAGAGATACAAATGTTTCACGTGTTAATCAGGAAACTGCCAAGGAAGTGAATTCTGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGCTGCTGGTAAATCAAGTCATTTAGTGGGAAGAAATGATGTAGATGCGCAAAGTTCACCTATTAGAGAGGATGCCTTACATGGAGATGCAAATGATTCTCACAATGAGCAGCAATCAACAATGAAAGGAAATGCCGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAGCTGTTCACAACCAAAATACTTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACGCTTTCAATAGAACTCGTAGTAGCTGGTGAAAGAGGAAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAATGTACAGAAGTCCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCTACTCCTTCTGAAGAAAAAAAGAAATCTGGAGACAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAAGGATGGTGCTGCCTTGGATATCACACCTCCCAAGAGGGCAAACATACACTCTCTTAAAGCTAAAGACGATAGAGATAGAAGTAACATGTCAATACGTAAGCCTGTTGACAATATAGGCAAGTTGCCTAAGTTATCTGCTGGAATATCCCCCAAGGAACTTGAGAGGATGGGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8985" ref_strand="+" ref_description="SGN-M8985 C2_At5g47710 [cosii_markers]">
      <seq>atttagaactcaaatttttaattttggcttcgcctctttttggtcagcgagtattgttgttgttcttctcagttgagtcattttattgtaccctaaaaaaagggttttttctgctttaatggagtagtaattttatttgttttcatgtgctaatttgaatgtatatgtcaaattcagtcaatatgggaagcaaatttggacaggtaaaagttatagttgttcaaggcaggcgtttggtgattcgggactttaagagcagtgatccttatgtcattctcaaactgggtaatcagactgcaaaaacaaaggtcataaatagctgccttaatcctgtttggaatgaagaatttcatttttccatttcagaacatgctcaggttctcaaattgcaagtgtttgacaaagaccacttcaaggccgatgacaaaatgggaaatgctcatctcagccttcagcctttagttgcttctgctagattgagaaagattcttggggttaccgctaaaggaacaacactgaggaaggttattccagagagtgataactgtctagcagcggatagcagtattaattgggtgaatggtgaggttgttcaagatgtctggttgaggctttgtgatgtggattctggggatatagaactgaagatcatattgatcgatctcccttctgcagctccctctaagtaagacggagatagatctgttgaagttaggattggttggtccttagatttactttcttgtcgcaggtaaaggtttagcatgtgtgatatatccagtaggagagccagcacttagttgtatctcaaatgtattatatatattcataatggtgtgtacttgtgctccagctaaatccttgttagaacattgcttctcctagttcttttcaatagcagcattgagctgatggattaacataccattgctgttctgtatttttggtgaagctcatcgtcattttgactgctatctttaagaaatcgatgcattaaagctgagaaaagtattgttaccttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0062I24-51wpw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0062I24.2" temp_strand="-" temp_description="C11HBa0062I24.2  AC212432.2 htgs_phase:3 submitted_to_sgn_as:gi|166159189|gb|AC212432.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0062I24, complete sequence">
        <position start="151426" stop="16373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="151126" g_stop="150834" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="150750" g_stop="150655" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="389" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="148393" g_stop="147759" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="1024" r_length="635" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="147522" g_stop="147507" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1025" r_stop="1040" r_length="16" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0062I24.2" gen_strand="-" ref_id="SGN-M8985" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1040</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0062I24.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="151126" e_stop="150834"/>
          <exon e_start="150750" e_stop="150655"/>
          <exon e_start="148393" e_stop="147759"/>
          <exon e_start="147522" e_stop="147507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAGGTAACAAAAAGACTTAATTCTTCAAGAAAAGATTCAATTTTTAGGTTGAATCGATATAAAATTATCTATATTTGTTGTATCAGACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTGGTGAGTTTTGAACCCTCTCAAGCCTCAAATTCATTTACTTGACTAATCTTGTGTCTCATACTGTTTTGAACTACACTTGCATAATCTTGGATTATTTCTTAAAGAATGAAAATTGTTGGCATCATGTGTAAATGTTACAGCTTGTTAAGGTTGGATAAAGGTGTCCGTGAATTCGACATACTTAAGTGTGATGTTTGTATATCTGAGTGACAGAATTGTATAAACGGAAATATAGGAATCTAGCAGAGATAAAAATGGAGAAAGGAAAATGGTTATCTTGAGATATATCATGGAATGAATGGGTACATAGCATTCATTAAGAACCGAAAAATAGTTTTTATGATGAAGTAACCATTGGATCCTATATGTTTCACTTGGGGAAACAACCATAAATTATTAATAATGAACTAAAAGTCCAAGGATGATAATCCGATAATTGTTGATGCATGAGAGACCGCAAGCTTAATCTTTATACACCTGACCGGCAAAACCCCCAGAGAAATGGAGAAAGAAGCTAATGAAGAGAGCATAAAATGAAATAATCGAAAGAGGAAACCTAAATTGAAGTGAGTGGTTAGGAAGACTAAGAGAAAGCTCTTACATGGAAACAGCCCGTGGCAAATTTAGAGCCAAAAGATAGGGCACCAGCACCCGTGATATCTTCGTAAAATTAGATATTATACTGTGGCACCCGTACTACAACAAGTCTAAATCGTCCACATGGTTAAATGTTGAGCTTTTGACCTTGAGGATTAAGGATCAATTCCCACTTCAATACGTTTTACTTGGTGCACCCATGTTCGAAAAATCCTAGATTCGCCTCAGGAAACAACACTACTCGAAGGTCCATATTTTTCAATTTGGGCAAGATTTTAATACAATAAGTTGGTGGCTGTGTAGTTTTTCTCCAATGTACACGCTGCCTCTTGAGAATTTAATATCATGAGCTAGCAACTTCTACTTTCAAGTGAAGGAACGTTTTTGTCTAGTATCAAGGCATATGATAGCTTTCATGTTGAGAGAAGTGATATTTAAGCTTTCATTTTGCTGCTGAGGTATTATATGCGAGTAGCTCTGTGGACAAAAACTATATTTTGAAGAAATTCATAGCATGTAATTTGTGGATGTTGATCAAGGTGTATGTCTGGTTTAAGCAGCCATGTATATTATTCTTTATAGGAATTTGTCTTAGAACTGTCTATGCTCAAGAATTACACCACAATATGGAGTTATCAAGAAAATATAATGCTCTCAAGGGAGTTAATCATGCATTTGAATGCACAAATATAAAAAGCAATAAAAGATCTTTTTAGGACATAAATAAGTTTCATTCGCCTTCCTGCTTAAGGCACTAGTTCGGATGGGAACCCTGATCAGGCAGGTGCCTAGCTAACATAGCTATCCGTCGTTCTTTTTTGAGAGGTGGTCACAATCAGTTGGTTAGTTCTTCCATGTTAGTCCATGAGCATATTGAACTGTTTGAAAGATAATATAAAGGCAAATTCCTTAATGGGTGAAACATAAATGATAATAATGCAGTCACTTTGGAATAGGTAAAAATTATCTTACCCATTTTTTATGTAATTTTTTCACTTCCAAGTGGTGTGATAGTACAGATGATATGATGAAACTAAGCGGATGAAACAAAAAGGAAAACAATCAAACAGCGGGAGAGGGGTCTTTACAGGATATGGGGAGAAGAAAATATCAGACTGTACCTTGTAGCTTATTGTCCAAAGATTGGGAGTTAGAGTTCTCTAAGCTGATATTGTCACTCTTATGAAAGGGAAAAAAATCATAGATTTAGTTAAATAAAGAGACTACCCATCTCATTAACCACCGATGTGGTACTTTTTCATTCTTCAACATAATTTTGTTTTAATGTTATGATCAGATAAGTTGGTCAAACAGGTCTTTCAGTTATCCACTATATATTAGGAGGATTCTTGCTATGACTGAGCTTCAGTTGCTGCACTGTTCTTTGATCCTTCTTTGTAGTGAGCGGGCATGTGCGTGCACACAGTTTTTAATTTCTATGCTTCGGTGATGATATTTTACATGTATGTTGAAGATGAACTTCGATGTAAGAGAAGTACTGCTCCATGCCAAAAAGAAAAAGAAAACATTTTCACTAGGCTTTTTTGTCTTCAGGGTTGTATCTTTACTACCTGAAACGTGATCTTTTCAGTTCTTGAATAGCCATTTCAAAATTTTATACCTTTTAAGTTTTTTTTTAGCTAATGAAAATTCAATTGTGACAGCAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGATGTCAACTATACACATTTTCAACTATATTCTGATTGATATGTATCCATGAATTGCGTAATTTATGGGCATTTTTTTATTTCCGAGTTACAAAATTCATATCTAAAAAAGAGAATAATATCCATTGCACCTCACATTTGTCATTTTTGTGGCCATTTCTCCCTCAACAGCCATTATTTGTATGGTTTTGCGTTTATTCAGCAAAAACCCCTCTTGGAAATGAACAACTTCACAAAGAGAAAAAATAAAAAAAAA</genome_strand>
        <mrna_strand>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG...................................................................................ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTAAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTAAA............................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28921" PGL_stop="35364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28921" e_stop="29218"/>
            <exon e_start="34616" e_stop="35098"/>
            <exon e_start="35350" e_stop="35364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28921" e_stop="29218" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.941">
            <gDNA_intron_boundary i_start="29219" i_stop="34615" i_length="5397"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34616" e_stop="35098" e_length="483"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35099" i_stop="35349" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="35350" e_stop="35364" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28921" stop="29218"/>
              <exon start="34616" stop="35098"/>
              <exon start="35350" stop="35364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6822" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCAAGCAAAGTCGGAGACGCAGTAAGCAAAGCGCTGAACAGCAACAAAGTGTTGAATGTAGTGTTAATGAGTGCATTTGGATTGCTATGTATGAGATCAGTGCAGCAACAGAAGAATATGGAAGTTCTTGAAGCAGAAAAGGACTCTTTGCTCAAATCTAATAAAGCTATGAAGAAGGATATGTGGGATTGGAAGCAGCAGCTTTTTGCTGAAGCTGAGTTACCCAATCCACTTATTCCACTCTCTAAGATTAAAGCCATTTATGGAGACGTTCAAACCACCACATCGACTTCTG : GTGGAGATGCTCATAACGGAGATGGAAAATCACCTGCAGGAGTATTTGTTATCTGAAAGCCATTGTTGTAGCTTGTTCATGACGAAGCAAGTTGTTTTCTGGCAAAATAACAAGCGGCCACTCAGATCTGTGAAATATCATGCTTCAGTTAGTAGAATGGGAAGCTTGGGAAAGTGGTGTAATTCTGAGTTTTCTCTTGGAACTTAGTGATTTACAGTTGTTTTTTCCCTTCTCCTCTCTCATGTAGTCCGTTAGGAGGTCGAGATCCAAGTTTAATTTGTGGTGACACTGCACCACTTATCTACTTTTGTTGCTGGGACTATGCCATGAGCTGAGTTTCACTATCTATCAACCAAATATTTATGAGTTCATGCATTTGGATGTTTGATTGATTCCACTTCAGTTTAGGCATGGGTGTTCTCAGCAAGATAACAATGTAACCAGCTTTTCTTAGTCACTGTGAAGATATGATATTTTTTATAA : GAACTAGAACAAAAA</gDNA_template>
            <first_frame> L  A  S  K  V  G  D  A  V  S  K  A  L  N  S  N  K  V  L  N  V  V  L  M  S  A  F  G  L  L  C  M  R  S  V  Q  Q  Q  K  N  M  E  V  L  E  A  E  K  D  S  L  L  K  S  N  K  A  M  K  K  D  M  W  D  W  K  Q  Q  L  F  A  E  A  E  L  P  N  P  L  I  P  L  S  K  I  K  A  I  Y  G  D  V  Q  T  T  T  S  T  S   : G  G  D  A  H  N  G  D  G  K  S  P  A  G  V  F  V  I  *  K  P  L  L  *  L  V  H  D  E  A  S  C  F  L  A  K  *  Q  A  A  T  Q  I  C  E  I  S  C  F  S  *  *  N  G  K  L  G  K  V  V  *  F  *  V  F  S  W  N  L  V  I  Y  S  C  F  F  P  S  P  L  S  C  S  P  L  G  G  R  D  P  S  L  I  C  G  D  T  A  P  L  I  Y  F  C  C  W  D  Y  A  M  S  *  V  S  L  S  I  N  Q  I  F  M  S  S  C  I  W  M  F  D  *  F  H  F  S  L  G  M  G  V  L  S  K  I  T  M  *  P  A  F  L  S  H  C  E  D  M  I  F  F  I   : R  T  R  T  K  </first_frame>
            <second_frame>  W  Q  A  K  S  E  T  Q  *  A  K  R  *  T  A  T  K  C  *  M  *  C  *  *  V  H  L  D  C  Y  V  *  D  Q  C  S  N  R  R  I  W  K  F  L  K  Q  K  R  T  L  C  S  N  L  I  K  L  *  R  R  I  C  G  I  G  S  S  S  F  L  L  K  L  S  Y  P  I  H  L  F  H  S  L  R  L  K  P  F  M  E  T  F  K  P  P  H  R  L  L  :  V  E  M  L  I  T  E  M  E  N  H  L  Q  E  Y  L  L  S  E  S  H  C  C  S  L  F  M  T  K  Q  V  V  F  W  Q  N  N  K  R  P  L  R  S  V  K  Y  H  A  S  V  S  R  M  G  S  L  G  K  W  C  N  S  E  F  S  L  G  T  *  *  F  T  V  V  F  S  L  L  L  S  H  V  V  R  *  E  V  E  I  Q  V  *  F  V  V  T  L  H  H  L  S  T  F  V  A  G  T  M  P  *  A  E  F  H  Y  L  S  T  K  Y  L  *  V  H  A  F  G  C  L  I  D  S  T  S  V  *  A  W  V  F  S  A  R  *  Q  C  N  Q  L  F  L  V  T  V  K  I  *  Y  F  L  *  :  E  L  E  Q  K </second_frame>
            <third_frame>   G  K  Q  S  R  R  R  S  K  Q  S  A  E  Q  Q  Q  S  V  E  C  S  V  N  E  C  I  W  I  A  M  Y  E  I  S  A  A  T  E  E  Y  G  S  S  *  S  R  K  G  L  F  A  Q  I  *  *  S  Y  E  E  G  Y  V  G  L  E  A  A  A  F  C  *  S  *  V  T  Q  S  T  Y  S  T  L  *  D  *  S  H  L  W  R  R  S  N  H  H  I  D  F  W :   W  R  C  S  *  R  R  W  K  I  T  C  R  S  I  C  Y  L  K  A  I  V  V  A  C  S  *  R  S  K  L  F  S  G  K  I  T  S  G  H  S  D  L  *  N  I  M  L  Q  L  V  E  W  E  A  W  E  S  G  V  I  L  S  F  L  L  E  L  S  D  L  Q  L  F  F  P  F  S  S  L  M  *  S  V  R  R  S  R  S  K  F  N  L  W  *  H  C  T  T  Y  L  L  L  L  L  G  L  C  H  E  L  S  F  T  I  Y  Q  P  N  I  Y  E  F  M  H  L  D  V  *  L  I  P  L  Q  F  R  H  G  C  S  Q  Q  D  N  N  V  T  S  F  S  *  S  L  *  R  Y  D  I  F  Y  K :   N  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28921" stop="29218"/>
                    <exon start="34616" stop="34671"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASKVGDAVSKALNSNKVLNVVLMSAFGLLCMRSVQQQKNMEVLEAEKDSLLKSNKAMKKDMWDWKQQLFAEAELPNPLIPLSKIKAIYGDVQTTTSTSGGDAHNGDGKSPAGVFVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29096" stop="29218"/>
                    <exon start="34616" stop="34822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRICGIGSSSFLLKLSYPIHLFHSLRLKPFMETFKPPHRLLVEMLITEMENHLQEYLLSESHCCSLFMTKQVVFWQNNKRPLRSVKYHASVSRMGSLGKWCNSEFSLGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="54019" PGL_stop="57098"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54019" e_stop="54068"/>
            <exon e_start="54687" e_stop="54923"/>
            <exon e_start="55157" e_stop="55261"/>
            <exon e_start="55448" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56389"/>
            <exon e_start="56482" e_stop="56594"/>
            <exon e_start="56828" e_stop="57098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.927" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54019" e_stop="54068" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.947">
            <gDNA_intron_boundary i_start="54069" i_stop="54686" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54687" e_stop="54923" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.883">
            <gDNA_intron_boundary i_start="54924" i_stop="55156" i_length="233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55157" e_stop="55261" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55262" i_stop="55447" i_length="186"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55448" e_stop="55723" e_length="276"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56205" e_stop="56389" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.857">
            <gDNA_intron_boundary i_start="56390" i_stop="56481" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56482" e_stop="56594" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.559" acc_prob="0.927">
            <gDNA_intron_boundary i_start="56595" i_stop="56827" i_length="233"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56828" e_stop="57098" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54019" stop="54068"/>
              <exon start="54687" stop="54923"/>
              <exon start="55157" stop="55261"/>
              <exon start="55448" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56389"/>
              <exon start="56482" stop="56594"/>
              <exon start="56828" stop="57098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6806-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCACTTCCTTTCTCTTTGTGCCGCTCTAACAAGTCTTGTACTAGAAAG : TTTGTCAAAGGGAGCTTTGGAGTATTTGCTGTGTATGGGGAGGAGGGTGGGATTCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCCAGGACTAAAGTTCCACAAAGTAAAGGCAAGTTCTTGGATGCAAATCAAGCTTTAGAAGTTGCTAGATATGATCTACAATACTGTGATTGGAGAGCTAGGCAAGATGTACTTACTATAATGCTGCTACACGAAAAG : GTTGTGGAAGTATTAAACCCTCTGGCACGCGATTATAAATCTATTGGAACCATGAAGAAGGAACTTGCAGAATTGCAAGAAGAACTTTCTCAGGCTCACAACCAG : GTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAG : ATAGTCATGGAACTTCCAGTGGAACATGGACTACTTTTAGACAATCTTTTAGATCTTGCACACGCACCTTTCACACATACATCAACTTTTGCTAAAGGATGGAGTGTACCAAG : CTTGGTAAAGTTCTTGACTCCTGCATCTGGTCTGCAAGGATATTGGGATCCATATCCAATAGATATGGAATTTAGACCACCTTGTATGGTTTTATCCACCATTGGCATCTCAAAGCCAGGCAAATTGGAAGGACAGAGTACCAAGCAGTGTTCTACGCACCTTCATCAACTGCATGTTTGCTTACCTGCATCACGACAGAAAACACGGTTATTATATAGAATGTCACTGGATTTTGCTCCCCTGCTGAAACACATCCCCTTCATGCAATAC</gDNA_template>
            <first_frame> F  H  F  L  S  L  C  A  A  L  T  S  L  V  L  E  S :   L  S  K  G  A  L  E  Y  L  L  C  M  G  R  R  V  G  F  Q  I  R  K  V  P  G  *  H  S  L  M  W  K  I  P  G  L  K  F  H  K  V  K  A  S  S  W  M  Q  I  K  L  *  K  L  L  D  M  I  Y  N  T  V  I  G  E  L  G  K  M  Y  L  L  *  C  C  Y  T  K  R :   L  W  K  Y  *  T  L  W  H  A  I  I  N  L  L  E  P  *  R  R  N  L  Q  N  C  K  K  N  F  L  R  L  T  T  R :   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R :   *  S  W  N  F  Q  W  N  M  D  Y  F  *  T  I  F  *  I  L  H  T  H  L  S  H  I  H  Q  L  L  L  K  D  G  V  Y  Q   : A  W  *  S  S  *  L  L  H  L  V  C  K  D  I  G  I  H  I  Q  *  I  W  N  L  D  H  L  V  W  F  Y  P  P  L  A  S  Q  S  Q  A  N  W  K  D  R  V  P  S  S  V  L  R  T  F  I  N  C  M  F  A  Y  L  H  H  D  R  K  H  G  Y  Y  I  E  C  H  W  I  L  L  P  C  *  N  T  S  P  S  C  N   </first_frame>
            <second_frame>  F  T  S  F  L  F  V  P  L  *  Q  V  L  Y  *  K   : V  C  Q  R  E  L  W  S  I  C  C  V  W  G  G  G  W  D  S  R  *  E  K  F  L  V  D  T  L  *  C  G  R  S  Q  D  *  S  S  T  K  *  R  Q  V  L  G  C  K  S  S  F  R  S  C  *  I  *  S  T  I  L  *  L  E  S  *  A  R  C  T  Y  Y  N  A  A  T  R  K   : G  C  G  S  I  K  P  S  G  T  R  L  *  I  Y  W  N  H  E  E  G  T  C  R  I  A  R  R  T  F  S  G  S  Q  P   : G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *   : D  S  H  G  T  S  S  G  T  W  T  T  F  R  Q  S  F  R  S  C  T  R  T  F  H  T  Y  I  N  F  C  *  R  M  E  C  T  K  :  L  G  K  V  L  D  S  C  I  W  S  A  R  I  L  G  S  I  S  N  R  Y  G  I  *  T  T  L  Y  G  F  I  H  H  W  H  L  K  A  R  Q  I  G  R  T  E  Y  Q  A  V  F  Y  A  P  S  S  T  A  C  L  L  T  C  I  T  T  E  N  T  V  I  I  *  N  V  T  G  F  C  S  P  A  E  T  H  P  L  H  A  I  </second_frame>
            <third_frame>   S  L  P  F  S  L  C  R  S  N  K  S  C  T  R  K  :  F  V  K  G  S  F  G  V  F  A  V  Y  G  E  E  G  G  I  P  D  K  K  S  S  W  L  T  L  F  N  V  E  D  P  R  T  K  V  P  Q  S  K  G  K  F  L  D  A  N  Q  A  L  E  V  A  R  Y  D  L  Q  Y  C  D  W  R  A  R  Q  D  V  L  T  I  M  L  L  H  E  K  :  V  V  E  V  L  N  P  L  A  R  D  Y  K  S  I  G  T  M  K  K  E  L  A  E  L  Q  E  E  L  S  Q  A  H  N  Q  :  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  :  I  V  M  E  L  P  V  E  H  G  L  L  L  D  N  L  L  D  L  A  H  A  P  F  T  H  T  S  T  F  A  K  G  W  S  V  P  S :   L  V  K  F  L  T  P  A  S  G  L  Q  G  Y  W  D  P  Y  P  I  D  M  E  F  R  P  P  C  M  V  L  S  T  I  G  I  S  K  P  G  K  L  E  G  Q  S  T  K  Q  C  S  T  H  L  H  Q  L  H  V  C  L  P  A  S  R  Q  K  T  R  L  L  Y  R  M  S  L  D  F  A  P  L  L  K  H  I  P  F  M  Q  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54021" stop="54068"/>
                    <exon start="54687" stop="54923"/>
                    <exon start="55157" stop="55261"/>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56389"/>
                    <exon start="56482" stop="56594"/>
                    <exon start="56828" stop="57098"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1383</number_coding_nucleotides>
                  <number_encoded_amino_acids>461</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPFSLCRSNKSCTRKFVKGSFGVFAVYGEEGGIPDKKSSWLTLFNVEDPRTKVPQSKGKFLDANQALEVARYDLQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELSQAHNQVHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCSTHLHQLHVCLPASRQKTRLLYRMSLDFAPLLKHIPFMQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55447" e_stop="55723"/>
            <exon e_start="55927" e_stop="56074"/>
            <exon e_start="56205" e_stop="56518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="0.975"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="0.959"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="55447" e_stop="55723" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55724" i_stop="55926" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="55927" e_stop="56074" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="56075" i_stop="56204" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="56205" e_stop="56518" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55447" stop="55723"/>
              <exon start="55927" stop="56074"/>
              <exon start="56205" stop="56518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6806-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTACATATATCAGAGGCCCGGGTTTCTGCTGCTTTAGATAAGCTAGCTTACATGGAAGAATTGGTTAACGATAGGCTTCTGCAAGAGAGAAGCACAGTAGAATCAGAATGCACGTCTTCCTCTGCAAGCACGTCAACAGGATTATTAGACACTCCAAAAAGCAAGCAACCACGAAGAACGCTGAATGTCTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCATTCTCCGCAGATCTTAAGAATGACACCATG : TTACCGATTGATTGCTTTGAGCAATCGTGGGTGATCTTTCGTGGGGCTGATGGAAAACCTGGATGTGTCCGGAATACATGTGCACATAGAGCCTGCCCTCTTGATCTTGGCTCAGTAAATGAGGGTCGCATCCAATGCCCTTATCACG : GATGGGAGTATTCCACCGACGGGAAGTGTGAGAAAATGCCATCAACAAGATTACTGAATGTAAAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAATGATCCACCTGCAGCTACCCTTCCTTCTTTACTACCACCTTCTGGATTTCAGATCCATGCTGAGGTTCGAAATCACTAACGTTTGATTTTCAGCTGTTTATCTTACAACTTATGCATGAGTATTTTGCCTTACGACTGTTTTCACTGAAAGTGCAGATAGTCATGGAACTTCCAGTGGAACATGGACTACTTT</gDNA_template>
            <first_frame> G  T  Y  I  R  G  P  G  F  C  C  F  R  *  A  S  L  H  G  R  I  G  *  R  *  A  S  A  R  E  K  H  S  R  I  R  M  H  V  F  L  C  K  H  V  N  R  I  I  R  H  S  K  K  Q  A  T  T  K  N  A  E  C  L  R  S  C  P  R  L  Q  F  P  F  E  E  L  L  V  P  C  C  I  L  R  R  S  *  E  *  H  H   : V  T  D  *  L  L  *  A  I  V  G  D  L  S  W  G  *  W  K  T  W  M  C  P  E  Y  M  C  T  *  S  L  P  S  *  S  W  L  S  K  *  G  S  H  P  M  P  L  S  R :   M  G  V  F  H  R  R  E  V  *  E  N  A  I  N  K  I  T  E  C  K  D  Q  S  T  A  L  L  *  A  R  G  N  D  M  D  L  A  R  K  *  S  T  C  S  Y  P  S  F  F  T  T  T  F  W  I  S  D  P  C  *  G  S  K  S  L  T  F  D  F  Q  L  F  I  L  Q  L  M  H  E  Y  F  A  L  R  L  F  S  L  K  V  Q  I  V  M  E  L  P  V  E  H  G  L  L  </first_frame>
            <second_frame>  V  H  I  S  E  A  R  V  S  A  A  L  D  K  L  A  Y  M  E  E  L  V  N  D  R  L  L  Q  E  R  S  T  V  E  S  E  C  T  S  S  S  A  S  T  S  T  G  L  L  D  T  P  K  S  K  Q  P  R  R  T  L  N  V  S  G  P  V  Q  D  Y  S  S  R  L  K  N  F  W  Y  P  V  A  F  S  A  D  L  K  N  D  T  M  :  L  P  I  D  C  F  E  Q  S  W  V  I  F  R  G  A  D  G  K  P  G  C  V  R  N  T  C  A  H  R  A  C  P  L  D  L  G  S  V  N  E  G  R  I  Q  C  P  Y  H   : G  W  E  Y  S  T  D  G  K  C  E  K  M  P  S  T  R  L  L  N  V  K  I  K  A  L  P  C  F  E  Q  E  G  M  I  W  I  W  P  G  N  D  P  P  A  A  T  L  P  S  L  L  P  P  S  G  F  Q  I  H  A  E  V  R  N  H  *  R  L  I  F  S  C  L  S  Y  N  L  C  M  S  I  L  P  Y  D  C  F  H  *  K  C  R  *  S  W  N  F  Q  W  N  M  D  Y  F </second_frame>
            <third_frame>   Y  I  Y  Q  R  P  G  F  L  L  L  *  I  S  *  L  T  W  K  N  W  L  T  I  G  F  C  K  R  E  A  Q  *  N  Q  N  A  R  L  P  L  Q  A  R  Q  Q  D  Y  *  T  L  Q  K  A  S  N  H  E  E  R  *  M  S  Q  V  L  S  K  I  T  V  P  V  *  R  T  F  G  T  L  L  H  S  P  Q  I  L  R  M  T  P  C :   Y  R  L  I  A  L  S  N  R  G  *  S  F  V  G  L  M  E  N  L  D  V  S  G  I  H  V  H  I  E  P  A  L  L  I  L  A  Q  *  M  R  V  A  S  N  A  L  I  T  :  D  G  S  I  P  P  T  G  S  V  R  K  C  H  Q  Q  D  Y  *  M  *  R  S  K  H  C  P  A  L  S  K  R  E  *  Y  G  F  G  Q  E  M  I  H  L  Q  L  P  F  L  L  Y  Y  H  L  L  D  F  R  S  M  L  R  F  E  I  T  N  V  *  F  S  A  V  Y  L  T  T  Y  A  *  V  F  C  L  T  T  V  F  T  E  S  A  D  S  H  G  T  S  S  G  T  W  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55448" stop="55723"/>
                    <exon start="55927" stop="56074"/>
                    <exon start="56205" stop="56404"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHISEARVSAALDKLAYMEELVNDRLLQERSTVESECTSSSASTSTGLLDTPKSKQPRRTLNVSGPVQDYSSRLKNFWYPVAFSADLKNDTMLPIDCFEQSWVIFRGADGKPGCVRNTCAHRACPLDLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEVRNH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="61711" PGL_stop="57124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61711" e_stop="61546"/>
            <exon e_start="61465" e_stop="61314"/>
            <exon e_start="59908" e_stop="59793"/>
            <exon e_start="59470" e_stop="58684"/>
            <exon e_start="58257" e_stop="58236"/>
            <exon e_start="57130" e_stop="57124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.643" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.059" e_score="0.990"/>
          <exon-intron don_prob="0.900" acc_prob="0.764" e_score="0.455"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="61711" e_stop="61546" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.643">
            <gDNA_intron_boundary i_start="61545" i_stop="61466" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61465" e_stop="61314" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61313" i_stop="59909" i_length="1405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59908" e_stop="59793" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.994">
            <gDNA_intron_boundary i_start="59792" i_stop="59471" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="59470" e_stop="58684" e_length="787"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.059">
            <gDNA_intron_boundary i_start="58683" i_stop="58258" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="0.455">
            <gDNA_exon_boundary e_start="58257" e_stop="58236" e_length="22"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.764">
            <gDNA_intron_boundary i_start="58235" i_stop="57131" i_length="1105"/>
          </intron>
          <exon e_serial="6" e_score="0.857">
            <gDNA_exon_boundary e_start="57130" e_stop="57124" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61711" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="58684"/>
              <exon start="58257" stop="58236"/>
              <exon start="57130" stop="57124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61681" stop="61546"/>
              <exon start="61465" stop="61314"/>
              <exon start="59908" stop="59793"/>
              <exon start="59470" stop="59140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6681-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTATATAATGATTCATCACTAGCAGAGTCAAGGGGGAAGAAGAAGGAGGATGACAGACAGCAAGGTAGAGACTCTATCAAGGTTAGCTCAATGGAGGATCGACAATTTCACAGCATCTACTTACAAAAGATCTGACCCTTTTAAAATTGGTATATGGAACTG : GCATCTGTCAATTGAGAAGAATCGGTATTTGTATATTCGATTGTTTCCTGAACCTTCTCGGCTTTCGAAAGAGCAGCTTCCTCCTCCTTTTGCTCGCTTTATGCTTCGTGTTACTACAACTGGAACCAATCGGAGACCTCATATATCTCCTG : TATATGAGAGGCTGCTTCGAACAAGTGATGACTTTGTGTGGCCTATTGATTCTTGTTTACAAGGTCGATTTGTCATTGATGTTGAGTTCCTTGACCTGAAGATCTACACCCCAAAT : GGTGGAGAAGGAAAATCTATATGGCCCAATGACATGATTTTGCAATCTTTAGCTACCCAAAGTACTCTCCGATGCCTCTCTCGCATGCTTGATGAGTCCATCCATACTGATGTTACCATTAATACGGCTGATGGATCAGTGCAAGCTCACAGAGCGATACTGTCTGCTACTTCTCCTGTATTCCACAGCATGTTCCTTCACGATCTCAGGGAGAAAGAGTCCTCTATAATCGACATAGAAGACATGTCAACAGAATCATGCACAGCGCTTCTTAGTTACTTGTATGGAACCATAAAACAAGAGGATTTCTGGAAGCACCGATTGGCATTACTGGGTGCGGCAAACAAGTATGATATTGTAGATTTGAAGAATGCTTGTGAGGAAAGTCTCCTAGAAGACATCAACTCGGGTAATGTCCTCGAAAGACTGCAAGAGGCCTGGCTTTACCAGCTAAATAAATTGAAAAAAGGTTGCTTGATGTATTTGTTCGATTTTGGCAAGATTTATGATGTTAGGGAGGAAATTAACAACTTCTTCAGACAGGCAGATAGAGATCTGATGCTAGAGATGTTTCAAGAAGTGCTCACAGTTTGGAAGCCTGCCTAACATGATGAGGTTTTTGCCACAGTTGTATATGGGATAACTCTATCTATTAATTACTAAGCTGTAGCTTTCTAAGAAAGCCATGTTGTATCTATATGCTAATCCTATGTAAATTTTGTTGAACTTATTAAGTGTATTATCTGGTATAAATTTATATAAATGGTTAATGTTCTGTTTGCAAGCA : CATAGGAACATCGACCACAATA : AAACAAA</gDNA_template>
            <first_frame> N  F  I  *  *  F  I  T  S  R  V  K  G  E  E  E  G  G  *  Q  T  A  R  *  R  L  Y  Q  G  *  L  N  G  G  S  T  I  S  Q  H  L  L  T  K  D  L  T  L  L  K  L  V  Y  G  T   : G  I  C  Q  L  R  R  I  G  I  C  I  F  D  C  F  L  N  L  L  G  F  R  K  S  S  F  L  L  L  L  L  A  L  C  F  V  L  L  Q  L  E  P  I  G  D  L  I  Y  L  L  :  Y  M  R  G  C  F  E  Q  V  M  T  L  C  G  L  L  I  L  V  Y  K  V  D  L  S  L  M  L  S  S  L  T  *  R  S  T  P  Q  M :   V  E  K  E  N  L  Y  G  P  M  T  *  F  C  N  L  *  L  P  K  V  L  S  D  A  S  L  A  C  L  M  S  P  S  I  L  M  L  P  L  I  R  L  M  D  Q  C  K  L  T  E  R  Y  C  L  L  L  L  L  Y  S  T  A  C  S  F  T  I  S  G  R  K  S  P  L  *  S  T  *  K  T  C  Q  Q  N  H  A  Q  R  F  L  V  T  C  M  E  P  *  N  K  R  I  S  G  S  T  D  W  H  Y  W  V  R  Q  T  S  M  I  L  *  I  *  R  M  L  V  R  K  V  S  *  K  T  S  T  R  V  M  S  S  K  D  C  K  R  P  G  F  T  S  *  I  N  *  K  K  V  A  *  C  I  C  S  I  L  A  R  F  M  M  L  G  R  K  L  T  T  S  S  D  R  Q  I  E  I  *  C  *  R  C  F  K  K  C  S  Q  F  G  S  L  P  N  M  M  R  F  L  P  Q  L  Y  M  G  *  L  Y  L  L  I  T  K  L  *  L  S  K  K  A  M  L  Y  L  Y  A  N  P  M  *  I  L  L  N  L  L  S  V  L  S  G  I  N  L  Y  K  W  L  M  F  C  L  Q  A  :  H  R  N  I  D  H  N   : K  T   </first_frame>
            <second_frame>  T  L  Y  N  D  S  S  L  A  E  S  R  G  K  K  K  E  D  D  R  Q  Q  G  R  D  S  I  K  V  S  S  M  E  D  R  Q  F  H  S  I  Y  L  Q  K  I  *  P  F  *  N  W  Y  M  E  L  :  A  S  V  N  *  E  E  S  V  F  V  Y  S  I  V  S  *  T  F  S  A  F  E  R  A  A  S  S  S  F  C  S  L  Y  A  S  C  Y  Y  N  W  N  Q  S  E  T  S  Y  I  S  C :   I  *  E  A  A  S  N  K  *  *  L  C  V  A  Y  *  F  L  F  T  R  S  I  C  H  *  C  *  V  P  *  P  E  D  L  H  P  K   : W  W  R  R  K  I  Y  M  A  Q  *  H  D  F  A  I  F  S  Y  P  K  Y  S  P  M  P  L  S  H  A  *  *  V  H  P  Y  *  C  Y  H  *  Y  G  *  W  I  S  A  S  S  Q  S  D  T  V  C  Y  F  S  C  I  P  Q  H  V  P  S  R  S  Q  G  E  R  V  L  Y  N  R  H  R  R  H  V  N  R  I  M  H  S  A  S  *  L  L  V  W  N  H  K  T  R  G  F  L  E  A  P  I  G  I  T  G  C  G  K  Q  V  *  Y  C  R  F  E  E  C  L  *  G  K  S  P  R  R  H  Q  L  G  *  C  P  R  K  T  A  R  G  L  A  L  P  A  K  *  I  E  K  R  L  L  D  V  F  V  R  F  W  Q  D  L  *  C  *  G  G  N  *  Q  L  L  Q  T  G  R  *  R  S  D  A  R  D  V  S  R  S  A  H  S  L  E  A  C  L  T  *  *  G  F  C  H  S  C  I  W  D  N  S  I  Y  *  L  L  S  C  S  F  L  R  K  P  C  C  I  Y  M  L  I  L  C  K  F  C  *  T  Y  *  V  Y  Y  L  V  *  I  Y  I  N  G  *  C  S  V  C  K  H :   I  G  T  S  T  T  I  :  K  Q  </second_frame>
            <third_frame>   L  Y  I  M  I  H  H  *  Q  S  Q  G  G  R  R  R  R  M  T  D  S  K  V  E  T  L  S  R  L  A  Q  W  R  I  D  N  F  T  A  S  T  Y  K  R  S  D  P  F  K  I  G  I  W  N  W :   H  L  S  I  E  K  N  R  Y  L  Y  I  R  L  F  P  E  P  S  R  L  S  K  E  Q  L  P  P  P  F  A  R  F  M  L  R  V  T  T  T  G  T  N  R  R  P  H  I  S  P   : V  Y  E  R  L  L  R  T  S  D  D  F  V  W  P  I  D  S  C  L  Q  G  R  F  V  I  D  V  E  F  L  D  L  K  I  Y  T  P  N  :  G  G  E  G  K  S  I  W  P  N  D  M  I  L  Q  S  L  A  T  Q  S  T  L  R  C  L  S  R  M  L  D  E  S  I  H  T  D  V  T  I  N  T  A  D  G  S  V  Q  A  H  R  A  I  L  S  A  T  S  P  V  F  H  S  M  F  L  H  D  L  R  E  K  E  S  S  I  I  D  I  E  D  M  S  T  E  S  C  T  A  L  L  S  Y  L  Y  G  T  I  K  Q  E  D  F  W  K  H  R  L  A  L  L  G  A  A  N  K  Y  D  I  V  D  L  K  N  A  C  E  E  S  L  L  E  D  I  N  S  G  N  V  L  E  R  L  Q  E  A  W  L  Y  Q  L  N  K  L  K  K  G  C  L  M  Y  L  F  D  F  G  K  I  Y  D  V  R  E  E  I  N  N  F  F  R  Q  A  D  R  D  L  M  L  E  M  F  Q  E  V  L  T  V  W  K  P  A  *  H  D  E  V  F  A  T  V  V  Y  G  I  T  L  S  I  N  Y  *  A  V  A  F  *  E  S  H  V  V  S  I  C  *  S  Y  V  N  F  V  E  L  I  K  C  I  I  W  Y  K  F  I  *  M  V  N  V  L  F  A  S   : T  *  E  H  R  P  Q  * :   N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61685" stop="61546"/>
                    <exon start="61465" stop="61314"/>
                    <exon start="59908" stop="59793"/>
                    <exon start="59470" stop="58865"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSQGGRRRRMTDSKVETLSRLAQWRIDNFTASTYKRSDPFKIGIWNWHLSIEKNRYLYIRLFPEPSRLSKEQLPPPFARFMLRVTTTGTNRRPHISPVYERLLRTSDDFVWPIDSCLQGRFVIDVEFLDLKIYTPNGGEGKSIWPNDMILQSLATQSTLRCLSRMLDESIHTDVTINTADGSVQAHRAILSATSPVFHSMFLHDLREKESSIIDIEDMSTESCTALLSYLYGTIKQEDFWKHRLALLGAANKYDIVDLKNACEESLLEDINSGNVLERLQEAWLYQLNKLKKGCLMYLFDFGKIYDVREEINNFFRQADRDLMLEMFQEVLTVWKPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="73734" PGL_stop="65088"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73734" e_stop="73670"/>
            <exon e_start="72711" e_stop="72625"/>
            <exon e_start="72458" e_stop="72346"/>
            <exon e_start="70819" e_stop="70703"/>
            <exon e_start="70618" e_stop="70522"/>
            <exon e_start="69582" e_stop="69509"/>
            <exon e_start="67822" e_stop="67769"/>
            <exon e_start="67668" e_stop="67567"/>
            <exon e_start="67385" e_stop="67327"/>
            <exon e_start="66416" e_stop="66206"/>
            <exon e_start="65507" e_stop="65088"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.877"/>
          <exon-intron don_prob="0.899" acc_prob="0.966" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.916" e_score="0.956"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="0.983"/>
          <exon-intron don_prob="0.818" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.987" acc_prob="0.965" e_score="0.986"/>
          <exon-intron don_prob="0.438" acc_prob="0.775" e_score="0.963"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="0.980"/>
          <exon-intron don_prob="0.977" acc_prob="0.975" e_score="0.949"/>
          <exon-intron don_prob="0.958" acc_prob="0.858" e_score="0.991"/>
          <exon-only e_score="0.879"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.877">
            <gDNA_exon_boundary e_start="73734" e_stop="73670" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73669" i_stop="72712" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="72711" e_stop="72625" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.966">
            <gDNA_intron_boundary i_start="72624" i_stop="72459" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="72458" e_stop="72346" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.916">
            <gDNA_intron_boundary i_start="72345" i_stop="70820" i_length="1526"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="70819" e_stop="70703" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="70702" i_stop="70619" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="70618" e_stop="70522" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.818" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70521" i_stop="69583" i_length="939"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="69582" e_stop="69509" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.965">
            <gDNA_intron_boundary i_start="69508" i_stop="67823" i_length="1686"/>
          </intron>
          <exon e_serial="7" e_score="0.963">
            <gDNA_exon_boundary e_start="67822" e_stop="67769" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.438" acc_prob="0.775">
            <gDNA_intron_boundary i_start="67768" i_stop="67669" i_length="100"/>
          </intron>
          <exon e_serial="8" e_score="0.980">
            <gDNA_exon_boundary e_start="67668" e_stop="67567" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="67566" i_stop="67386" i_length="181"/>
          </intron>
          <exon e_serial="9" e_score="0.949">
            <gDNA_exon_boundary e_start="67385" e_stop="67327" e_length="59"/>
          </exon>
          <intron i_serial="9" don_prob="0.977" acc_prob="0.975">
            <gDNA_intron_boundary i_start="67326" i_stop="66417" i_length="910"/>
          </intron>
          <exon e_serial="10" e_score="0.991">
            <gDNA_exon_boundary e_start="66416" e_stop="66206" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.958" acc_prob="0.858">
            <gDNA_intron_boundary i_start="66205" i_stop="65508" i_length="698"/>
          </intron>
          <exon e_serial="11" e_score="0.879">
            <gDNA_exon_boundary e_start="65507" e_stop="65088" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73734" stop="73670"/>
              <exon start="72711" stop="72625"/>
              <exon start="72458" stop="72346"/>
              <exon start="70819" stop="70703"/>
              <exon start="70618" stop="70522"/>
              <exon start="69582" stop="69509"/>
              <exon start="67822" stop="67769"/>
              <exon start="67668" stop="67567"/>
              <exon start="67385" stop="67327"/>
              <exon start="66416" stop="66206"/>
              <exon start="65507" stop="65088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTCGGGCTGGATATCCAAATTGTCAAGCACAACATTCAAAACCAAGAAAAATGGCCTCAG : ATTACACAGTGGAACTTGCTGTGGAACTCGAAACTGCTGCACAGTTGAGAGCTTCTCAGTTCATTTTTCCTCATAGGCCATGGCTTG : ATTTGTATGGGATTAATGTTAGACCTGTCGCTCCTTTTGGAAGTGCTAGCAGCAAGCAGTTTGTTGACCCTGCATTGATACACCGAGTACTACCTGATGAACTGCTTTTTGAG : ATCTTGTCAAAAACGACCCCATACACCTTGGGTAAGGCAGCTTGTGTTTGTCGAAAGTGGAGGTATACAATTCGGAACCCTGTATTTTGGCGCAATGCATGCCTAAAGGCTTGGCAG : GTTTCTGGATTGGTAGAAAACTATAAGGTCCTTCACTTGAAGTATGATGGTTCATGGAGAAAAATGTGGCTTTTAAGACCAAGGATTCGTACGGATG : GTATTTATGTCAGTCGAAACACATATATTCGTGCAGGAATAGCTGAGTGGAAGATCACTAATCCAGTTCATCTT : GTGTGTTACTATCGCTATATGAGATTTTATCCTTCTGGCAGGTTCCTTTATAAG : AATTCATCACAAAAAGTCAAAGATGTAGCGAAGTACCTGAACTTCCGTGCCTCAAAAGCTGATTGTGTTTTTAAGGGGAATTACACTCTATCAGAGGATAAA : GTTGAAGCTGCTCTTTTGTACCCGGGAATGCGTCCAACTGTGTTGAGATTCCGCTTAAG : GTTGAGGGGTACAACCCAAGGTGCTAATAACAGAATGGATCTACTTGCTCTTCTTACAAGTGGCGTGAATGATAATGAGGTTAATGGCCCGGATGAAGACATTCTTGGAGTTGTCGAGAGGTGGGAAGAGGATGAAACACATAACCCAGATGTTCCAGCAATTTCACACAAGAGGGGTCTAACACCTTTTGTCTTTGTTTCATTTGAGGAG : GTGGAAACTTCAGTTCTAAATCTCCCAGTGGAAAAAATGGATTATTATGTTCCTGGTTAAGAACTGGATCAAACAGACAATCCATTGGTTGTAAATGTGTAACATTGTTGTTTGTAACTCTTTTATTTTTGGCATGGCATCTTAGAATCGGGAAGTTTTCAATGTGTTGTGAACAGGAAATGGTCTCTCTACCTCCACGAGGTAGTGGTAAGGTCTGCGTTCATCCTCCATATACTTTGCTTGTGGGACTTATGAGATTTCAATGGGTATGTTGTTGTCGTAAACAAGATCCTATCGAGCAATAGAAGACCAGTATAATACCGGTCTTCTGCGTGTGTATTGTATGGCAGTTTGAATATGTTCCAAGTTGGAATCTGTTTGCTGATAAATGGAGTTCAATAATCATTGTATTATTTATGC</gDNA_template>
            <first_frame> F  F  S  G  W  I  S  K  L  S  S  T  T  F  K  T  K  K  N  G  L  R :   L  H  S  G  T  C  C  G  T  R  N  C  C  T  V  E  S  F  S  V  H  F  S  S  *  A  M  A  * :   F  V  W  D  *  C  *  T  C  R  S  F  W  K  C  *  Q  Q  A  V  C  *  P  C  I  D  T  P  S  T  T  *  *  T  A  F  *   : D  L  V  K  N  D  P  I  H  L  G  *  G  S  L  C  L  S  K  V  E  V  Y  N  S  E  P  C  I  L  A  Q  C  M  P  K  G  L  A   : G  F  W  I  G  R  K  L  *  G  P  S  L  E  V  *  W  F  M  E  K  N  V  A  F  K  T  K  D  S  Y  G  W :   Y  L  C  Q  S  K  H  I  Y  S  C  R  N  S  *  V  E  D  H  *  S  S  S  S   : C  V  L  L  S  L  Y  E  I  L  S  F  W  Q  V  P  L  *   : E  F  I  T  K  S  Q  R  C  S  E  V  P  E  L  P  C  L  K  S  *  L  C  F  *  G  E  L  H  S  I  R  G  *   : S  *  S  C  S  F  V  P  G  N  A  S  N  C  V  E  I  P  L  K  :  V  E  G  Y  N  P  R  C  *  *  Q  N  G  S  T  C  S  S  Y  K  W  R  E  *  *  *  G  *  W  P  G  *  R  H  S  W  S  C  R  E  V  G  R  G  *  N  T  *  P  R  C  S  S  N  F  T  Q  E  G  S  N  T  F  C  L  C  F  I  *  G   : G  G  N  F  S  S  K  S  P  S  G  K  N  G  L  L  C  S  W  L  R  T  G  S  N  R  Q  S  I  G  C  K  C  V  T  L  L  F  V  T  L  L  F  L  A  W  H  L  R  I  G  K  F  S  M  C  C  E  Q  E  M  V  S  L  P  P  R  G  S  G  K  V  C  V  H  P  P  Y  T  L  L  V  G  L  M  R  F  Q  W  V  C  C  C  R  K  Q  D  P  I  E  Q  *  K  T  S  I  I  P  V  F  C  V  C  I  V  W  Q  F  E  Y  V  P  S  W  N  L  F  A  D  K  W  S  S  I  I  I  V  L  F  M  </first_frame>
            <second_frame>  F  S  R  A  G  Y  P  N  C  Q  A  Q  H  S  K  P  R  K  M  A  S   : D  Y  T  V  E  L  A  V  E  L  E  T  A  A  Q  L  R  A  S  Q  F  I  F  P  H  R  P  W  L   : D  L  Y  G  I  N  V  R  P  V  A  P  F  G  S  A  S  S  K  Q  F  V  D  P  A  L  I  H  R  V  L  P  D  E  L  L  F  E  :  I  L  S  K  T  T  P  Y  T  L  G  K  A  A  C  V  C  R  K  W  R  Y  T  I  R  N  P  V  F  W  R  N  A  C  L  K  A  W  Q  :  V  S  G  L  V  E  N  Y  K  V  L  H  L  K  Y  D  G  S  W  R  K  M  W  L  L  R  P  R  I  R  T  D   : G  I  Y  V  S  R  N  T  Y  I  R  A  G  I  A  E  W  K  I  T  N  P  V  H  L  :  V  C  Y  Y  R  Y  M  R  F  Y  P  S  G  R  F  L  Y  K  :  N  S  S  Q  K  V  K  D  V  A  K  Y  L  N  F  R  A  S  K  A  D  C  V  F  K  G  N  Y  T  L  S  E  D  K  :  V  E  A  A  L  L  Y  P  G  M  R  P  T  V  L  R  F  R  L  R :   L  R  G  T  T  Q  G  A  N  N  R  M  D  L  L  A  L  L  T  S  G  V  N  D  N  E  V  N  G  P  D  E  D  I  L  G  V  V  E  R  W  E  E  D  E  T  H  N  P  D  V  P  A  I  S  H  K  R  G  L  T  P  F  V  F  V  S  F  E  E  :  V  E  T  S  V  L  N  L  P  V  E  K  M  D  Y  Y  V  P  G  *  E  L  D  Q  T  D  N  P  L  V  V  N  V  *  H  C  C  L  *  L  F  Y  F  W  H  G  I  L  E  S  G  S  F  Q  C  V  V  N  R  K  W  S  L  Y  L  H  E  V  V  V  R  S  A  F  I  L  H  I  L  C  L  W  D  L  *  D  F  N  G  Y  V  V  V  V  N  K  I  L  S  S  N  R  R  P  V  *  Y  R  S  S  A  C  V  L  Y  G  S  L  N  M  F  Q  V  G  I  C  L  L  I  N  G  V  Q  *  S  L  Y  Y  L  C </second_frame>
            <third_frame>   F  L  G  L  D  I  Q  I  V  K  H  N  I  Q  N  Q  E  K  W  P  Q  :  I  T  Q  W  N  L  L  W  N  S  K  L  L  H  S  *  E  L  L  S  S  F  F  L  I  G  H  G  L  :  I  C  M  G  L  M  L  D  L  S  L  L  L  E  V  L  A  A  S  S  L  L  T  L  H  *  Y  T  E  Y  Y  L  M  N  C  F  L  R :   S  C  Q  K  R  P  H  T  P  W  V  R  Q  L  V  F  V  E  S  G  G  I  Q  F  G  T  L  Y  F  G  A  M  H  A  *  R  L  G  R :   F  L  D  W  *  K  T  I  R  S  F  T  *  S  M  M  V  H  G  E  K  C  G  F  *  D  Q  G  F  V  R  M  :  V  F  M  S  V  E  T  H  I  F  V  Q  E  *  L  S  G  R  S  L  I  Q  F  I  L :   C  V  T  I  A  I  *  D  F  I  L  L  A  G  S  F  I  R :   I  H  H  K  K  S  K  M  *  R  S  T  *  T  S  V  P  Q  K  L  I  V  F  L  R  G  I  T  L  Y  Q  R  I  K :   L  K  L  L  F  C  T  R  E  C  V  Q  L  C  *  D  S  A  *   : G  *  G  V  Q  P  K  V  L  I  T  E  W  I  Y  L  L  F  L  Q  V  A  *  M  I  M  R  L  M  A  R  M  K  T  F  L  E  L  S  R  G  G  K  R  M  K  H  I  T  Q  M  F  Q  Q  F  H  T  R  G  V  *  H  L  L  S  L  F  H  L  R  R :   W  K  L  Q  F  *  I  S  Q  W  K  K  W  I  I  M  F  L  V  K  N  W  I  K  Q  T  I  H  W  L  *  M  C  N  I  V  V  C  N  S  F  I  F  G  M  A  S  *  N  R  E  V  F  N  V  L  *  T  G  N  G  L  S  T  S  T  R  *  W  *  G  L  R  S  S  S  I  Y  F  A  C  G  T  Y  E  I  S  M  G  M  L  L  S  *  T  R  S  Y  R  A  I  E  D  Q  Y  N  T  G  L  L  R  V  Y  C  M  A  V  *  I  C  S  K  L  E  S  V  C  *  *  M  E  F  N  N  H  C  I  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73733" stop="73670"/>
                    <exon start="72711" stop="72625"/>
                    <exon start="72458" stop="72346"/>
                    <exon start="70819" stop="70703"/>
                    <exon start="70618" stop="70522"/>
                    <exon start="69582" stop="69509"/>
                    <exon start="67822" stop="67769"/>
                    <exon start="67668" stop="67567"/>
                    <exon start="67385" stop="67327"/>
                    <exon start="66416" stop="66206"/>
                    <exon start="65507" stop="65448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSRAGYPNCQAQHSKPRKMASDYTVELAVELETAAQLRASQFIFPHRPWLDLYGINVRPVAPFGSASSKQFVDPALIHRVLPDELLFEILSKTTPYTLGKAACVCRKWRYTIRNPVFWRNACLKAWQVSGLVENYKVLHLKYDGSWRKMWLLRPRIRTDGIYVSRNTYIRAGIAEWKITNPVHLVCYYRYMRFYPSGRFLYKNSSQKVKDVAKYLNFRASKADCVFKGNYTLSEDKVEAALLYPGMRPTVLRFRLRLRGTTQGANNRMDLLALLTSGVNDNEVNGPDEDILGVVERWEEDETHNPDVPAISHKRGLTPFVFVSFEEVETSVLNLPVEKMDYYVPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="97053" PGL_stop="89159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97053" e_stop="96937"/>
            <exon e_start="96861" e_stop="96783"/>
            <exon e_start="96620" e_stop="96541"/>
            <exon e_start="95594" e_stop="95475"/>
            <exon e_start="94767" e_stop="94698"/>
            <exon e_start="94632" e_stop="94559"/>
            <exon e_start="89255" e_stop="89159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.914" acc_prob="0.981" e_score="0.906"/>
          <exon-intron don_prob="0.991" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="97053" e_stop="96937" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.914" acc_prob="0.981">
            <gDNA_intron_boundary i_start="96936" i_stop="96862" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96861" e_stop="96783" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.923">
            <gDNA_intron_boundary i_start="96782" i_stop="96621" i_length="162"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96620" e_stop="96541" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96540" i_stop="95595" i_length="946"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="95594" e_stop="95475" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.935">
            <gDNA_intron_boundary i_start="95474" i_stop="94768" i_length="707"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94767" e_stop="94698" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="94697" i_stop="94633" i_length="65"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94632" e_stop="94559" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.989">
            <gDNA_intron_boundary i_start="94558" i_stop="89256" i_length="5303"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89255" e_stop="89159" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97053" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6677-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97009" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96541"/>
              <exon start="95594" stop="95475"/>
              <exon start="94767" stop="94698"/>
              <exon start="94632" stop="94559"/>
              <exon start="89255" stop="89159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96940" stop="96937"/>
              <exon start="96861" stop="96783"/>
              <exon start="96620" stop="96551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1806" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCCCGTTTCTTCTTCTTCTTCTTCAAGCGGGAAACAGTACAGCACTCTGACAAAAGAAAGAGAACAGCTATGGCGCCAGTTATGCAGAGCTCTCAGCCATGGGTCGAGAAATA : TCGACCGAAGCAAGTGAAGGATGTAGCTCACCAGGATGAAGTCGTTCGAGTCCTCACCAACACTCTCGAGACTTCTAAC : TGCCCGCATATGTTGTTTTATGGTCCTCCTGGAACTGGAAAGACAACCACTGCTCTTGCCATTGCCCATCAGCTTTTCGG : ACCTGAGCTGTATAAATCGAGGGTATTGGAGCTAAATGCTAGTGATGACCGTGGTATCAATGTAGTTCGTACAAAAATTAAGAACTTTGCTGCTGTTGCTGTAGGTTCTAATCGGCAAAG : TGGTTATCCTTGCCCACCTTTTAAGATCATAATCCTTGATGAAGCAGATTCAATGACTCAAGATGCTCAA : AATGCCTTGCGACGAACTATGGAGACATATTCAAAAGTTACAAGATTCTTCTTCATTTGTAATTACATCAGCAG : GATCATAGAGCCACTTGCTTCTAGATGTGCGAAGTTCAGATTCAAGCCACTTCCTGAAGAAATAATGGGCAGCCGAATATTGCATATTTGTAAAGAA</gDNA_template>
            <first_frame> N  F  P  F  L  L  L  L  L  Q  A  G  N  S  T  A  L  *  Q  K  K  E  N  S  Y  G  A  S  Y  A  E  L  S  A  M  G  R  E  I  :  S  T  E  A  S  E  G  C  S  S  P  G  *  S  R  S  S  P  H  Q  H  S  R  D  F  *   : L  P  A  Y  V  V  L  W  S  S  W  N  W  K  D  N  H  C  S  C  H  C  P  S  A  F  R  :  T  *  A  V  *  I  E  G  I  G  A  K  C  *  *  *  P  W  Y  Q  C  S  S  Y  K  N  *  E  L  C  C  C  C  C  R  F  *  S  A  K  :  W  L  S  L  P  T  F  *  D  H  N  P  *  *  S  R  F  N  D  S  R  C  S   : K  C  L  A  T  N  Y  G  D  I  F  K  S  Y  K  I  L  L  H  L  *  L  H  Q  Q  :  D  H  R  A  T  C  F  *  M  C  E  V  Q  I  Q  A  T  S  *  R  N  N  G  Q  P  N  I  A  Y  L  *  R  </first_frame>
            <second_frame>  I  S  R  F  F  F  F  F  F  K  R  E  T  V  Q  H  S  D  K  R  K  R  T  A  M  A  P  V  M  Q  S  S  Q  P  W  V  E  K  Y :   R  P  K  Q  V  K  D  V  A  H  Q  D  E  V  V  R  V  L  T  N  T  L  E  T  S  N  :  C  P  H  M  L  F  Y  G  P  P  G  T  G  K  T  T  T  A  L  A  I  A  H  Q  L  F  G :   P  E  L  Y  K  S  R  V  L  E  L  N  A  S  D  D  R  G  I  N  V  V  R  T  K  I  K  N  F  A  A  V  A  V  G  S  N  R  Q  S :   G  Y  P  C  P  P  F  K  I  I  I  L  D  E  A  D  S  M  T  Q  D  A  Q  :  N  A  L  R  R  T  M  E  T  Y  S  K  V  T  R  F  F  F  I  C  N  Y  I  S  R :   I  I  E  P  L  A  S  R  C  A  K  F  R  F  K  P  L  P  E  E  I  M  G  S  R  I  L  H  I  C  K  E </second_frame>
            <third_frame>   F  P  V  S  S  S  S  S  S  S  G  K  Q  Y  S  T  L  T  K  E  R  E  Q  L  W  R  Q  L  C  R  A  L  S  H  G  S  R  N   : I  D  R  S  K  *  R  M  *  L  T  R  M  K  S  F  E  S  S  P  T  L  S  R  L  L  T :   A  R  I  C  C  F  M  V  L  L  E  L  E  R  Q  P  L  L  L  P  L  P  I  S  F  S   : D  L  S  C  I  N  R  G  Y  W  S  *  M  L  V  M  T  V  V  S  M  *  F  V  Q  K  L  R  T  L  L  L  L  L  *  V  L  I  G  K   : V  V  I  L  A  H  L  L  R  S  *  S  L  M  K  Q  I  Q  *  L  K  M  L  K :   M  P  C  D  E  L  W  R  H  I  Q  K  L  Q  D  S  S  S  F  V  I  T  S  A   : G  S  *  S  H  L  L  L  D  V  R  S  S  D  S  S  H  F  L  K  K  *  W  A  A  E  Y  C  I  F  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97052" stop="96937"/>
                    <exon start="96861" stop="96783"/>
                    <exon start="96620" stop="96541"/>
                    <exon start="95594" stop="95475"/>
                    <exon start="94767" stop="94698"/>
                    <exon start="94632" stop="94559"/>
                    <exon start="89255" stop="89159"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRFFFFFFKRETVQHSDKRKRTAMAPVMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSNRQSGYPCPPFKIIILDEADSMTQDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMGSRILHICKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="135664" PGL_stop="127805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135664" e_stop="135491"/>
            <exon e_start="135090" e_stop="134620"/>
            <exon e_start="129095" e_stop="128927"/>
            <exon e_start="128799" e_stop="127805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.831" acc_prob="0.998" e_score="0.816"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="0.864"/>
          <exon-intron don_prob="0.818" acc_prob="0.946" e_score="0.959"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.816">
            <gDNA_exon_boundary e_start="135664" e_stop="135491" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.831" acc_prob="0.998">
            <gDNA_intron_boundary i_start="135490" i_stop="135091" i_length="400"/>
          </intron>
          <exon e_serial="2" e_score="0.864">
            <gDNA_exon_boundary e_start="135090" e_stop="134620" e_length="471"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="134619" i_stop="129096" i_length="5524"/>
          </intron>
          <exon e_serial="3" e_score="0.959">
            <gDNA_exon_boundary e_start="129095" e_stop="128927" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.946">
            <gDNA_intron_boundary i_start="128926" i_stop="128800" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="0.924">
            <gDNA_exon_boundary e_start="128799" e_stop="127805" e_length="995"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135664" stop="135491"/>
              <exon start="135090" stop="134620"/>
              <exon start="129095" stop="128927"/>
              <exon start="128799" stop="127805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8649" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCCCTCCAATTGATTGTCACGTCTGCGGCGGTTTTCCTAAGACTAGGGTAAAGGGAGGACGATATTAATATCACAAAACTCGACAGTGAATGAGTTTACATATGCCCAGAGATATCTTCGTCGGGATTGCTCGAAATTGAAGGTGTTCTTAGGGTTTCGGTTGAACATTT : CTCAAGCTGGGCATCTTGGTGGAAGCAGTCATCATAGGATCCTCGAGGGCTGAATCCGTGTGGTAAAAGTAGAGTGGTCTGTGAGTGGAGACAGTTATGGCTTTGGTAGAAGTTGGTAAAGAAGAGTCTCTAGTGGGTCTAGATAAGGATGAGGAAGTTGAATTTGTCTGGGGTAGAAAGAGAGGTATTGGTGGTAAGAGAAAGGAGGTGCAGTTTTATGAATCTTTTATCTATGATGGTGTGGAGTATACTTTATATGACTGTGTATACATGCACAAAGAAGGTGAACATCCTTACATTGGTAAGATCATAAAGATATGGGAAAATCCAGACAAGTCTAGGAAGGTAAAGATCCAGTGGTTTTTTCGGTCGACAGAGATCTTGTATCACCTGAAAGATGTAAAGGTAGCTGAGAATGAAGTATTTCTTGCCTCTGGTGAAGGCACAGGATTGGCCAATGTTAATCCTTTG : GAAGCTATTGCTGGCAGATGTAATGTTATCTGCACTTCAGAGGACATCAGAAATCCGCAGCCATCAGATGAAGAAGTTAAATTGGCTGACTATGTTTTCTACCGTGCTTTTGATGTTGGAACTTGTGCAATTTTGGATAAGATGATCGACAAAGTTGGTGGGCTGGACG : TCAAGTATGTTTTTAACAGGAAAGATAGTGAAAAGGCCAGTCATGTCCTCAAATTTGCTTCTGACAAGAAAGATAACAAAACTGCCATGGAATATCGAGCTAATGGGGAGTCCTCTGGGCTAAAACCACAGAATCATGCCAAAGTGAGTCATTTACTTGGAAAAAGTGATGTAGATGGACAAAGTTCTCTTGTTAGACAGGACGTACAGAGAGATACAAATGTTTCATCTGTTAATCAGGAAACTGTTAAGGAAGTGAATTATGTCCCTGGTGAGAAAAACTCACATGATTTGGGAGTTGCAAAAGTTGCTGGTAAATCAAGTCATTTAGTGGGAAGAAATGATGTAGATGCACAAAGTTCACCGATTAGAGAGGATGCCTTACATGGAGATGCAAATGATTCTCAAAATGAGCAGCAATCAACAATGAAAGGAAATGATGCGCCGGTGCTGGTTGTTAACAGCAAAATAGCCACTACAATTGTTCACAACCAAAATACGTCAAGTGAAGAAAATGCACTCTACACGGTTAAGAATGATAAAAAAGTTAATACACTCTCAATAGAACTCTTAGTAGCTGGCGAAAGAGGTAAACCTTCGAAGGATCTTGGCATTTTGGACGATAGGCCTTCAAAACGAATAAAAGTAAATGGTTCTGTGACACTATCAGAGGACAAGGGTGGGGACAGTGTACAGAAGTTCACTGTTTGCACAAATGACAAAGAGGTTATGGGAACAGGTGCCACTCCTTCTGAAGAAAGAAAGAAATCTGGAGATAGTAAGCTTTCTGGTGGACTGGACAAGAACATGCAGAACAGAAACGATGGTGCTGCCTTGGATATCAGGCCTCCAAAGAAGGCAATCATAGACTCTGTTAAAGTGAAAGAGGATAGAGATAGAGGTAACATGTCAATTGGTAAGCTTGTTGACAATATAGGCAAGTTGCCTAAATTATCTGCTGGAGTATCCCCCAAGGAAGTTGAGAGGATGGGTGGC</gDNA_template>
            <first_frame> L  F  P  P  I  D  C  H  V  C  G  G  F  P  K  T  R  V  K  G  G  R  Y  *  Y  H  K  T  R  Q  *  M  S  L  H  M  P  R  D  I  F  V  G  I  A  R  N  *  R  C  S  *  G  F  G  *  T  F  :  L  K  L  G  I  L  V  E  A  V  I  I  G  S  S  R  A  E  S  V  W  *  K  *  S  G  L  *  V  E  T  V  M  A  L  V  E  V  G  K  E  E  S  L  V  G  L  D  K  D  E  E  V  E  F  V  W  G  R  K  R  G  I  G  G  K  R  K  E  V  Q  F  Y  E  S  F  I  Y  D  G  V  E  Y  T  L  Y  D  C  V  Y  M  H  K  E  G  E  H  P  Y  I  G  K  I  I  K  I  W  E  N  P  D  K  S  R  K  V  K  I  Q  W  F  F  R  S  T  E  I  L  Y  H  L  K  D  V  K  V  A  E  N  E  V  F  L  A  S  G  E  G  T  G  L  A  N  V  N  P  L  :  E  A  I  A  G  R  C  N  V  I  C  T  S  E  D  I  R  N  P  Q  P  S  D  E  E  V  K  L  A  D  Y  V  F  Y  R  A  F  D  V  G  T  C  A  I  L  D  K  M  I  D  K  V  G  G  L  D   : V  K  Y  V  F  N  R  K  D  S  E  K  A  S  H  V  L  K  F  A  S  D  K  K  D  N  K  T  A  M  E  Y  R  A  N  G  E  S  S  G  L  K  P  Q  N  H  A  K  V  S  H  L  L  G  K  S  D  V  D  G  Q  S  S  L  V  R  Q  D  V  Q  R  D  T  N  V  S  S  V  N  Q  E  T  V  K  E  V  N  Y  V  P  G  E  K  N  S  H  D  L  G  V  A  K  V  A  G  K  S  S  H  L  V  G  R  N  D  V  D  A  Q  S  S  P  I  R  E  D  A  L  H  G  D  A  N  D  S  Q  N  E  Q  Q  S  T  M  K  G  N  D  A  P  V  L  V  V  N  S  K  I  A  T  T  I  V  H  N  Q  N  T  S  S  E  E  N  A  L  Y  T  V  K  N  D  K  K  V  N  T  L  S  I  E  L  L  V  A  G  E  R  G  K  P  S  K  D  L  G  I  L  D  D  R  P  S  K  R  I  K  V  N  G  S  V  T  L  S  E  D  K  G  G  D  S  V  Q  K  F  T  V  C  T  N  D  K  E  V  M  G  T  G  A  T  P  S  E  E  R  K  K  S  G  D  S  K  L  S  G  G  L  D  K  N  M  Q  N  R  N  D  G  A  A  L  D  I  R  P  P  K  K  A  I  I  D  S  V  K  V  K  E  D  R  D  R  G  N  M  S  I  G  K  L  V  D  N  I  G  K  L  P  K  L  S  A  G  V  S  P  K  E  V  E  R  M  G  G </first_frame>
            <second_frame>  F  S  L  Q  L  I  V  T  S  A  A  V  F  L  R  L  G  *  R  E  D  D  I  N  I  T  K  L  D  S  E  *  V  Y  I  C  P  E  I  S  S  S  G  L  L  E  I  E  G  V  L  R  V  S  V  E  H  F :   S  S  W  A  S  W  W  K  Q  S  S  *  D  P  R  G  L  N  P  C  G  K  S  R  V  V  C  E  W  R  Q  L  W  L  W  *  K  L  V  K  K  S  L  *  W  V  *  I  R  M  R  K  L  N  L  S  G  V  E  R  E  V  L  V  V  R  E  R  R  C  S  F  M  N  L  L  S  M  M  V  W  S  I  L  Y  M  T  V  Y  T  C  T  K  K  V  N  I  L  T  L  V  R  S  *  R  Y  G  K  I  Q  T  S  L  G  R  *  R  S  S  G  F  F  G  R  Q  R  S  C  I  T  *  K  M  *  R  *  L  R  M  K  Y  F  L  P  L  V  K  A  Q  D  W  P  M  L  I  L  W :   K  L  L  L  A  D  V  M  L  S  A  L  Q  R  T  S  E  I  R  S  H  Q  M  K  K  L  N  W  L  T  M  F  S  T  V  L  L  M  L  E  L  V  Q  F  W  I  R  *  S  T  K  L  V  G  W  T  :  S  S  M  F  L  T  G  K  I  V  K  R  P  V  M  S  S  N  L  L  L  T  R  K  I  T  K  L  P  W  N  I  E  L  M  G  S  P  L  G  *  N  H  R  I  M  P  K  *  V  I  Y  L  E  K  V  M  *  M  D  K  V  L  L  L  D  R  T  Y  R  E  I  Q  M  F  H  L  L  I  R  K  L  L  R  K  *  I  M  S  L  V  R  K  T  H  M  I  W  E  L  Q  K  L  L  V  N  Q  V  I  *  W  E  E  M  M  *  M  H  K  V  H  R  L  E  R  M  P  Y  M  E  M  Q  M  I  L  K  M  S  S  N  Q  Q  *  K  E  M  M  R  R  C  W  L  L  T  A  K  *  P  L  Q  L  F  T  T  K  I  R  Q  V  K  K  M  H  S  T  R  L  R  M  I  K  K  L  I  H  S  Q  *  N  S  *  *  L  A  K  E  V  N  L  R  R  I  L  A  F  W  T  I  G  L  Q  N  E  *  K  *  M  V  L  *  H  Y  Q  R  T  R  V  G  T  V  Y  R  S  S  L  F  A  Q  M  T  K  R  L  W  E  Q  V  P  L  L  L  K  K  E  R  N  L  E  I  V  S  F  L  V  D  W  T  R  T  C  R  T  E  T  M  V  L  P  W  I  S  G  L  Q  R  R  Q  S  *  T  L  L  K  *  K  R  I  E  I  E  V  T  C  Q  L  V  S  L  L  T  I  *  A  S  C  L  N  Y  L  L  E  Y  P  P  R  K  L  R  G  W  V   </second_frame>
            <third_frame>   F  P  S  N  *  L  S  R  L  R  R  F  S  *  D  *  G  K  G  R  T  I  L  I  S  Q  N  S  T  V  N  E  F  T  Y  A  Q  R  Y  L  R  R  D  C  S  K  L  K  V  F  L  G  F  R  L  N  I   : S  Q  A  G  H  L  G  G  S  S  H  H  R  I  L  E  G  *  I  R  V  V  K  V  E  W  S  V  S  G  D  S  Y  G  F  G  R  S  W  *  R  R  V  S  S  G  S  R  *  G  *  G  S  *  I  C  L  G  *  K  E  R  Y  W  W  *  E  K  G  G  A  V  L  *  I  F  Y  L  *  W  C  G  V  Y  F  I  *  L  C  I  H  A  Q  R  R  *  T  S  L  H  W  *  D  H  K  D  M  G  K  S  R  Q  V  *  E  G  K  D  P  V  V  F  S  V  D  R  D  L  V  S  P  E  R  C  K  G  S  *  E  *  S  I  S  C  L  W  *  R  H  R  I  G  Q  C  *  S  F   : G  S  Y  C  W  Q  M  *  C  Y  L  H  F  R  G  H  Q  K  S  A  A  I  R  *  R  S  *  I  G  *  L  C  F  L  P  C  F  *  C  W  N  L  C  N  F  G  *  D  D  R  Q  S  W  W  A  G  R :   Q  V  C  F  *  Q  E  R  *  *  K  G  Q  S  C  P  Q  I  C  F  *  Q  E  R  *  Q  N  C  H  G  I  S  S  *  W  G  V  L  W  A  K  T  T  E  S  C  Q  S  E  S  F  T  W  K  K  *  C  R  W  T  K  F  S  C  *  T  G  R  T  E  R  Y  K  C  F  I  C  *  S  G  N  C  *  G  S  E  L  C  P  W  *  E  K  L  T  *  F  G  S  C  K  S  C  W  *  I  K  S  F  S  G  K  K  *  C  R  C  T  K  F  T  D  *  R  G  C  L  T  W  R  C  K  *  F  S  K  *  A  A  I  N  N  E  R  K  *  C  A  G  A  G  C  *  Q  Q  N  S  H  Y  N  C  S  Q  P  K  Y  V  K  *  R  K  C  T  L  H  G  *  E  *  *  K  S  *  Y  T  L  N  R  T  L  S  S  W  R  K  R  *  T  F  E  G  S  W  H  F  G  R  *  A  F  K  T  N  K  S  K  W  F  C  D  T  I  R  G  Q  G  W  G  Q  C  T  E  V  H  C  L  H  K  *  Q  R  G  Y  G  N  R  C  H  S  F  *  R  K  K  E  I  W  R  *  *  A  F  W  W  T  G  Q  E  H  A  E  Q  K  R  W  C  C  L  G  Y  Q  A  S  K  E  G  N  H  R  L  C  *  S  E  R  G  *  R  *  R  *  H  V  N  W  *  A  C  *  Q  Y  R  Q  V  A  *  I  I  C  W  S  I  P  Q  G  S  *  E  D  G  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135006" stop="134620"/>
                    <exon start="129095" stop="128927"/>
                    <exon start="128799" stop="127805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETVMALVEVGKEESLVGLDKDEEVEFVWGRKRGIGGKRKEVQFYESFIYDGVEYTLYDCVYMHKEGEHPYIGKIIKIWENPDKSRKVKIQWFFRSTEILYHLKDVKVAENEVFLASGEGTGLANVNPLEAIAGRCNVICTSEDIRNPQPSDEEVKLADYVFYRAFDVGTCAILDKMIDKVGGLDVKYVFNRKDSEKASHVLKFASDKKDNKTAMEYRANGESSGLKPQNHAKVSHLLGKSDVDGQSSLVRQDVQRDTNVSSVNQETVKEVNYVPGEKNSHDLGVAKVAGKSSHLVGRNDVDAQSSPIREDALHGDANDSQNEQQSTMKGNDAPVLVVNSKIATTIVHNQNTSSEENALYTVKNDKKVNTLSIELLVAGERGKPSKDLGILDDRPSKRIKVNGSVTLSEDKGGDSVQKFTVCTNDKEVMGTGATPSEERKKSGDSKLSGGLDKNMQNRNDGAALDIRPPKKAIIDSVKVKEDRDRGNMSIGKLVDNIGKLPKLSAGVSPKEVERMGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="151126" PGL_stop="147507"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="151126" e_stop="150834"/>
            <exon e_start="150750" e_stop="150655"/>
            <exon e_start="148393" e_stop="147759"/>
            <exon e_start="147522" e_stop="147507"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="151126" e_stop="150834" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="150833" i_stop="150751" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="150750" e_stop="150655" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="150654" i_stop="148394" i_length="2261"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="148393" e_stop="147759" e_length="635"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="147758" i_stop="147523" i_length="236"/>
          </intron>
          <exon e_serial="4" e_score="0.938">
            <gDNA_exon_boundary e_start="147522" e_stop="147507" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="151126" stop="150834"/>
              <exon start="150750" stop="150655"/>
              <exon start="148393" stop="147759"/>
              <exon start="147522" stop="147507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAGAACTCAAATTTTTAATTTTGGCTTCGCCTCTTTTTGGTCAGCGAGTATTGTTGTTGTTCTTCTCAGTTGAGTCATTTTATTGTACCCTAAAAAAAGGGTTTTTTCTGCTTTAATGGAGTAGTAATTTTATTTGTTTTCATGTGCTAATTTGAATGTATATGTCAAATTCAGTCAATATGGGAAGCAAATTTGGACAGGTAAAAGTTATAGTTGTTCAAGGCAGGCGTTTGGTGATTCGGGACTTTAAGAGCAGTGATCCTTATGTCATTCTCAAACTGGGTAATCAG : ACTGCAAAAACAAAGGTCATAAATAGCTGCCTTAATCCTGTTTGGAATGAAGAATTTCATTTTTCCATTTCAGAACATGCTCAGGTTCTCAAATTG : CAAGTGTTTGACAAAGACCACTTCAAGGCCGATGACAAAATGGGAAATGCTCATCTCAGCCTTCAGCCTTTAGTTGCTTCTGCTAGATTGAGAAAGATTCTTGGGGTTACCGCTGAAGGAACAACACTGAGGAAGGTTATTCCAGAGAGTGATAACTGTCTAGCAGCGGATAGCAGTATTAATTGGGTGAATGGTGAGGTTGTTCAAGATGTCTGGTTGAGGCTTTGTGATGTGGATTCTGGGGATATAGAACTGAAGATCATATTGATCGATCTCCCTTCTGCAGCTCCCTCTAAGTAAGACGGAGATAGATCTGTTGAAGTTAGGATTGGTTGGTCCTTAGATTTACTTTCTTGTCGCAGGTAAAGGTTTAGCATGTGTGATATATCCAGTAGGAGAGCCAGCACTTAGTTGTATCTCAAATGTATTATATATATTCATAATGGTGTGTACTTGTGCTCCAGCTAAATCCTTGTTAGAACATTGCTTCTCCTAGTTCTTTTCAATAGCAGCATTGAGCTGATGGATTAACATACCATTGCTGTTCTGTATTTTTGGTGAAGCTCATCGTCATTTTGACTGCTATCTTTAAGAAATCGATGCATTAAAGCTGAGAAAAGTATTGTTACCTTGAT : AAAAAATAAAAAAAAA</gDNA_template>
            <first_frame> I  *  N  S  N  F  *  F  W  L  R  L  F  L  V  S  E  Y  C  C  C  S  S  Q  L  S  H  F  I  V  P  *  K  K  G  F  F  C  F  N  G  V  V  I  L  F  V  F  M  C  *  F  E  C  I  C  Q  I  Q  S  I  W  E  A  N  L  D  R  *  K  L  *  L  F  K  A  G  V  W  *  F  G  T  L  R  A  V  I  L  M  S  F  S  N  W  V  I  R :   L  Q  K  Q  R  S  *  I  A  A  L  I  L  F  G  M  K  N  F  I  F  P  F  Q  N  M  L  R  F  S  N  C :   K  C  L  T  K  T  T  S  R  P  M  T  K  W  E  M  L  I  S  A  F  S  L  *  L  L  L  L  D  *  E  R  F  L  G  L  P  L  K  E  Q  H  *  G  R  L  F  Q  R  V  I  T  V  *  Q  R  I  A  V  L  I  G  *  M  V  R  L  F  K  M  S  G  *  G  F  V  M  W  I  L  G  I  *  N  *  R  S  Y  *  S  I  S  L  L  Q  L  P  L  S  K  T  E  I  D  L  L  K  L  G  L  V  G  P  *  I  Y  F  L  V  A  G  K  G  L  A  C  V  I  Y  P  V  G  E  P  A  L  S  C  I  S  N  V  L  Y  I  F  I  M  V  C  T  C  A  P  A  K  S  L  L  E  H  C  F  S  *  F  F  S  I  A  A  L  S  *  W  I  N  I  P  L  L  F  C  I  F  G  E  A  H  R  H  F  D  C  Y  L  *  E  I  D  A  L  K  L  R  K  V  L  L  P  *   : *  K  I  K  K   </first_frame>
            <second_frame>  F  R  T  Q  I  F  N  F  G  F  A  S  F  W  S  A  S  I  V  V  V  L  L  S  *  V  I  L  L  Y  P  K  K  R  V  F  S  A  L  M  E  *  *  F  Y  L  F  S  C  A  N  L  N  V  Y  V  K  F  S  Q  Y  G  K  Q  I  W  T  G  K  S  Y  S  C  S  R  Q  A  F  G  D  S  G  L  *  E  Q  *  S  L  C  H  S  Q  T  G  *  S   : D  C  K  N  K  G  H  K  *  L  P  *  S  C  L  E  *  R  I  S  F  F  H  F  R  T  C  S  G  S  Q  I   : A  S  V  *  Q  R  P  L  Q  G  R  *  Q  N  G  K  C  S  S  Q  P  S  A  F  S  C  F  C  *  I  E  K  D  S  W  G  Y  R  *  R  N  N  T  E  E  G  Y  S  R  E  *  *  L  S  S  S  G  *  Q  Y  *  L  G  E  W  *  G  C  S  R  C  L  V  E  A  L  *  C  G  F  W  G  Y  R  T  E  D  H  I  D  R  S  P  F  C  S  S  L  *  V  R  R  R  *  I  C  *  S  *  D  W  L  V  L  R  F  T  F  L  S  Q  V  K  V  *  H  V  *  Y  I  Q  *  E  S  Q  H  L  V  V  S  Q  M  Y  Y  I  Y  S  *  W  C  V  L  V  L  Q  L  N  P  C  *  N  I  A  S  P  S  S  F  Q  *  Q  H  *  A  D  G  L  T  Y  H  C  C  S  V  F  L  V  K  L  I  V  I  L  T  A  I  F  K  K  S  M  H  *  S  *  E  K  Y  C  Y  L  D  :  K  K  *  K  K  </second_frame>
            <third_frame>   L  E  L  K  F  L  I  L  A  S  P  L  F  G  Q  R  V  L  L  L  F  F  S  V  E  S  F  Y  C  T  L  K  K  G  F  F  L  L  *  W  S  S  N  F  I  C  F  H  V  L  I  *  M  Y  M  S  N  S  V  N  M  G  S  K  F  G  Q  V  K  V  I  V  V  Q  G  R  R  L  V  I  R  D  F  K  S  S  D  P  Y  V  I  L  K  L  G  N  Q  :  T  A  K  T  K  V  I  N  S  C  L  N  P  V  W  N  E  E  F  H  F  S  I  S  E  H  A  Q  V  L  K  L  :  Q  V  F  D  K  D  H  F  K  A  D  D  K  M  G  N  A  H  L  S  L  Q  P  L  V  A  S  A  R  L  R  K  I  L  G  V  T  A  E  G  T  T  L  R  K  V  I  P  E  S  D  N  C  L  A  A  D  S  S  I  N  W  V  N  G  E  V  V  Q  D  V  W  L  R  L  C  D  V  D  S  G  D  I  E  L  K  I  I  L  I  D  L  P  S  A  A  P  S  K  *  D  G  D  R  S  V  E  V  R  I  G  W  S  L  D  L  L  S  C  R  R  *  R  F  S  M  C  D  I  S  S  R  R  A  S  T  *  L  Y  L  K  C  I  I  Y  I  H  N  G  V  Y  L  C  S  S  *  I  L  V  R  T  L  L  L  L  V  L  F  N  S  S  I  E  L  M  D  *  H  T  I  A  V  L  Y  F  W  *  S  S  S  S  F  *  L  L  S  L  R  N  R  C  I  K  A  E  K  S  I  V  T  L  I :   K  N  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0062I24.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="150968" stop="150834"/>
                    <exon start="150750" stop="150655"/>
                    <exon start="148393" stop="148094"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MYMSNSVNMGSKFGQVKVIVVQGRRLVIRDFKSSDPYVILKLGNQTAKTKVINSCLNPVWNEEFHFSISEHAQVLKLQVFDKDHFKADDKMGNAHLSLQPLVASARLRKILGVTAEGTTLRKVIPESDNCLAADSSINWVNGEVVQDVWLRLCDVDSGDIELKIILIDLPSAAPSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 128 chains have been computed
$ 
$ memory statistics:
$ 368776 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 33525 bytes was the average size of a spliced alignment
$ 13888 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1984 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 128 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:52:38
-->
