<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:04:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330492" ref_strand="+" ref_description="SGN-E330492 [cTOD-4-H20]">
      <seq>ttaatagtagagccaaaaaaagtttcaatttacttgagataaagaaagcatatattcgattattaaagtcagaagcaacaatgggtcatcatcatcatcagttaaccgacccacttgtcactctttgtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaattaggcttcttattcttgcttgggtgcatttcagatctcattcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtttacaactcttccaaaatagttgcttacagagcaaagtttcaaaatggccatgctgcgtttgtgaaagaagtccgaggtttcgaagatgaggatgatacggccttctacagggaggtacagttactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcggccctaagaggttcctagtctttgaaaatatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="6515" stop="11002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6815" g_stop="7062" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8833" g_stop="9091" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="507" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9092" i_stop="10673" i_length="1582">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10674" g_stop="10702" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E330492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6815" e_stop="7062"/>
          <exon e_start="8833" e_stop="9091"/>
          <exon e_start="10674" e_stop="10702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCGTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTTGAAAATATGGAAAAAG</genome_strand>
        <mrna_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGTCTTTGAAAATATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622167" ref_strand="+" ref_description="SGN-E622167 [72531]">
      <seq>gataaagaaagcatatattcgattattaaagtcagaagcacaatgggtcatcatcatcatcagttaaccgacccacttgtcactcttagtagtagtagtagtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaatcaggcttcttattcttgcttgggtgcatttcagatctcgttcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtgtacaactcttccaaaagagttgcttacagagcaaagtttcaaaatggccatgctgcgattgtgaaagaagtccgagctttcgaatatcaggatgatactgccttctacagggaggtacaattgctcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcgggcctaagaggtttctagtcttttgaaaatatggcaaaaaggaagtctgaaaggaaacacctttctgaccctctgatgaccccattaactgcgaggataagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="6552" stop="11026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6852" g_stop="7062" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8833" g_stop="9091" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="481" r_length="259" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9092" i_stop="10673" i_length="1582">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10674" g_stop="10726" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="538" r_length="57" r_score="0.830"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98">
            <donor d_prob="0.995" d_score="0.83"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10825" g_stop="10860" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="574" r_length="36" r_score="0.806"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E622167" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6852" e_stop="7062"/>
          <exon e_start="8833" e_stop="9091"/>
          <exon e_start="10674" e_stop="10726"/>
          <exon e_start="10825" e_stop="10860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTT--T-GTA---------CTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCGTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTT-GAAAATATGG-AAAAAGGAAGTCTG-AAGG-AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGAC</genome_strand>
        <mrna_strand>GATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGC-ACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTAGTAGTAGTAGTAGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATCAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTGTACAACTCTTCCAAAAGAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGATTGTGAAAGAAGTCCGAGCTTTCGAATATCAGGATGATACTGCCTTCTACAGGGAGGTACAATTGCTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGGCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTAGTCTTTTGAAAATATGGCAAAAAGGAAGTCTGAAAGGAAACACCTTTCTG..................................................................................................ACCCTCTGATGACCCCATTAACTGCGAGGATAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470622" ref_strand="+" ref_description="SGN-E470622 [cSTB-19-L4]">
      <seq>agtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaatcaggcttcttattcttgcttgggtgcatttcagatctcgttcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtgtataactcttccaaaagagttgcttacagagcaaagtttcaaaatggccatgctgcgattgtgaaagaagtccgagctttcgaatatcaggatgatactgccttctacagggaggtacaattactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgtggccctaagaggtttctagtctttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="6641" stop="9394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6940" g_stop="7062" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8833" g_stop="9091" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="382" r_length="259" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E470622" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6940" e_stop="7062"/>
          <exon e_start="8833" e_stop="9091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG</genome_strand>
        <mrna_strand>AGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATCAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTGTATAACTCTTCCAAAAGAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGATTGTGAAAGAAGTCCGAGCTTTCGAATATCAGGATGATACTGCCTTCTACAGGGAGGTACAATTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGTGGCCCTAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687663" ref_strand="+" ref_description="SGN-E687663 [T3_tus_79_F05]">
      <seq>cgtacacctttctgaccctctgatgactccactaaactggattataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtccacacaacttagtctgtaagtagtctgctgcgttttgacattgattatgaaattagacctcttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="10518" stop="12298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10713" g_stop="10726" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10825" g_stop="10892" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10893" i_stop="11140" i_length="248">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11141" g_stop="11230" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="172" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11231" i_stop="11352" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11353" g_stop="11422" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="242" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11423" i_stop="11506" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11507" g_stop="11998" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="734" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E687663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10713" e_stop="10726"/>
          <exon e_start="10825" e_stop="10892"/>
          <exon e_start="11141" e_stop="11230"/>
          <exon e_start="11353" e_stop="11422"/>
          <exon e_start="11507" e_stop="11998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</genome_strand>
        <mrna_strand>CGTACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGATTATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323132" ref_strand="+" ref_description="SGN-E323132 [cTOB-28-L23]">
      <seq>aacacctttctgaccctctgatgactccactaaactggagaataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtcacacaacttagtctgtaagtagtctgctgcgttttgacattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="10518" stop="12267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10715" g_stop="10726" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10825" g_stop="10892" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="80" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10893" i_stop="11140" i_length="248">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11141" g_stop="11230" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="170" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11231" i_stop="11352" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11353" g_stop="11422" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="240" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11423" i_stop="11506" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11507" g_stop="11968" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="701" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E323132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10715" e_stop="10726"/>
          <exon e_start="10825" e_stop="10892"/>
          <exon e_start="11141" e_stop="11230"/>
          <exon e_start="11353" e_stop="11422"/>
          <exon e_start="11507" e_stop="11968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATT</genome_strand>
        <mrna_strand>AACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGT-CACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704179" ref_strand="+" ref_description="SGN-E704179 [FA23CC07]">
      <seq>ctggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgaagacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcataaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaaagtcaaaaactgatgctttagtgaaatagaaatattattttcttggggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13743" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13443" g_stop="13217" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13048" g_stop="12850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="426" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="881" r_length="455" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="882" polyA_stop="897"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E704179" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13443" e_stop="13217"/>
          <exon e_start="13048" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>CTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGAAGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGA--T-----G--TTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAAGTCAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395587" ref_strand="+" ref_description="SGN-E395587 [TUS-16-F12](-)">
      <seq>tcaagaggaagggtgaggacctgtttgttgatcacacattgcccttaaatgaggcactgtgtggtttccagttcatattggcacacttggatggcagacgggtccttgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcattgtggaatttccggatttgttgagcctgccacaggtgcaggttttggaggcaatgttaccatcaaggcctacatcacagtactttgacatggaactggatgaatgtgaggggaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtttggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttttgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattatttttttggggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13290" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12990" g_stop="12850" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="605" r_length="464" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E395587" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12990" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCAAGAGGAAGGGTGAGGACCTGTTTGTTGATCACACATTGCCCTTAAATGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGGTCCTTGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATTGTGGAATTTCCGGATTTGTTGAGCCTGCCACAGGTGCAGGTTTTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTTTGACATGGAACTGGATGAATGTGAGGGGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTTTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTTTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTTTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244147" ref_strand="+" ref_description="SGN-E244147 [cLEE-1-G14]">
      <seq>tccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13224" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12924" g_stop="12850" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="539" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E244147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12924" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351789" ref_strand="+" ref_description="SGN-E351789 [cTOS-8-P2]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13193" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12893" g_stop="12850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E351789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12893" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353363" ref_strand="+" ref_description="SGN-E353363 [cTOS-15-I18]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13193" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12893" g_stop="12850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E353363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12893" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356921" ref_strand="+" ref_description="SGN-E356921 [cTOS-22-J15]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13193" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12893" g_stop="12850" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E356921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12893" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208145" ref_strand="-" ref_description="SGN-E208145 [cLEC-34-P8]">
      <seq>taaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13182" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12882" g_stop="12850" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="497" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="515"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E208145" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208145" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12882" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251569" ref_strand="-" ref_description="SGN-E251569 [cLEG-9-D17]">
      <seq>agttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaacaaactgatgctttagtgaaacagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13038" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12863" g_stop="12850" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12272" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="478" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="502"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E251569" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12863" e_stop="12850"/>
          <exon e_start="12735" e_stop="12272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>AGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAACAAACTGATGCTTTAGTGAAACAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711697" ref_strand="+" ref_description="SGN-E711697 [FB02CH05]">
      <seq>cgattaggatggcagacggctcctcataaagtcaaaccctgccgaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13204" stop="11971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12908" g_stop="12850" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12274" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="512" r_length="453" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="546"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E711697" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12908" e_stop="12850"/>
          <exon e_start="12735" e_stop="12274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAA</genome_strand>
        <mrna_strand>CGATTAGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGCCGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGA--T-----G--TTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606451" ref_strand="-" ref_description="SGN-E606451 [22394]">
      <seq>agagcacccgaagttcaaagaggaagggtgaagatctgtttgttgatcacaccttgaccttaactgaggcactgtgtggcttccagttcatattgacacacttggatggcagacagctcctcataaaatcaaatcctggagaagttgtcaaacctgatcaattcaaggcgatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcaccgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatcttaccaccaagacctacatcacagtactcagacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaggaaatgagaaggaaacaagccgcacaacaagaggcatatgatgaggatgaagagatgtctggtagtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgtattctgttgttttggggagtccaaaaactgatgctttaatgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13304" stop="11996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13004" g_stop="12850" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12735" g_stop="12343" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="549" r_length="393" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E606451" ref_strand="-">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606451" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13004" e_stop="12850"/>
          <exon e_start="12735" e_stop="12343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCACCCGAAGTTC-AAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGG</genome_strand>
        <mrna_strand>AGAGCACCCGAAGTTCAAAGAGGAAGGGTGAAGATCTGTTTGTTGATCACACCTTGACCTTAACTGAGGCACTGTGTGGCTTCCAGTTCATATTGACACACTTGGATGGCAGACAGCTCCTCATAAAATCAAATCCTGGAGAAGTTGTCAAACCTG..................................................................................................................ATCAATTCAAGGCGATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCACCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATCTTACCACCAAGACCTACATCACAGTACTCAGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAGGAAATGAGAAGGAAACAAGCCGCACAACAAGAGGCATATGATGAGGATGAAGAGATGTCTGGTAGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTATTCTGTTGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250797" ref_strand="+" ref_description="SGN-E250797 [cLEG-13-C3]">
      <seq>ttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13730" stop="12222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13430" g_stop="13217" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13048" g_stop="12850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="413" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12735" g_stop="12522" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="627" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E250797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13430" e_stop="13217"/>
          <exon e_start="13048" e_stop="12850"/>
          <exon e_start="12735" e_stop="12522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</genome_strand>
        <mrna_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700698" ref_strand="+" ref_description="SGN-E700698 [FA13DF05]">
      <seq>ccattgaaggtgtcgcttgaggacctataccctgggatgaccaacaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgaagacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcataaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="14077" stop="12337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13777" g_stop="13689" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="366" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13048" g_stop="12850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="565" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12735" g_stop="12637" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="664" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E700698" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13777" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="12850"/>
          <exon e_start="12735" e_stop="12637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATT</genome_strand>
        <mrna_strand>CCATTGAAGGTGTCGCTTGAGGACCTATACCCTGGGATGACCAACAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGAAGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250880" ref_strand="+" ref_description="SGN-E250880 [cLEG-13-C15]">
      <seq>aatcagacagcttgggcctgtaatgatccagcaaatgcagcagccttgtaatgaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaaatccatgttgaaaaaggaatgcataatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgatgcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaatgaatgccagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13727" stop="12397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13427" g_stop="13217" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13048" g_stop="12850" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="410" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12735" g_stop="12697" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="449" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E250880" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13427" e_stop="13217"/>
          <exon e_start="13048" e_stop="12850"/>
          <exon e_start="12735" e_stop="12697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTT</genome_strand>
        <mrna_strand>AATCAGACAGCTTGGGCCTGTAATGATCCAGCAAATGCAGCAGCCTTGTAATGAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAATCCATGTTGAAAAAGGAATGCATAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGATGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAATGAATGCCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273415" ref_strand="+" ref_description="SGN-E273415 [cLEN-3-E8]">
      <seq>agaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaagcactgtgtggtttccagttcatattggcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="14034" stop="12605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13734" g_stop="13689" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="323" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13048" g_stop="12905" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="467" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E273415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13734" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="12905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</genome_strand>
        <mrna_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAAGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395588" ref_strand="+" ref_description="SGN-E395588 [TUS-16-F12]">
      <seq>cttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="14481" stop="12622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14181" g_stop="14156" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="165" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="442" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13048" g_stop="12922" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="569" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E395588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14181" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="12922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</genome_strand>
        <mrna_strand>CTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701045" ref_strand="+" ref_description="SGN-E701045 [FA14DE08]">
      <seq>ctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15766" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15466" g_stop="15268" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="365" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="504" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="781" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13048" g_stop="13012" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="818" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E701045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15466" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="13012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCC</genome_strand>
        <mrna_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707643" ref_strand="+" ref_description="SGN-E707643 [FA33CD02]">
      <seq>ccatttcacctgagccttcaaagatgtgtatatatacaccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15843" stop="12720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15544" g_stop="15268" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="443" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="582" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="859" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13048" g_stop="13016" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="892" r_length="33" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E707643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15544" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="13016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTT</genome_strand>
        <mrna_strand>CCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706431" ref_strand="+" ref_description="SGN-E706431 [FA29DG07]">
      <seq>ttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacatttccctggcgaggctgatgaagcgcctgatacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15763" stop="12917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15463" g_stop="15268" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="362" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="501" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13493" g_stop="13217" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="779" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13048" g_stop="13038" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="790" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E706431" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15463" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13217"/>
          <exon e_start="13048" e_stop="13038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACA-TTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGT</genome_strand>
        <mrna_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235856" ref_strand="+" ref_description="SGN-E235856 [cLED-15-J10]">
      <seq>ggagatgaaaggatctcctgatatagagaagtgagatttcaatgcaagtgctcaaatgttctcttacgttgtattgtattggtttgtttctgtaactgcagcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcanaatggacagaaaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="13894" stop="12941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13594" g_stop="13241" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E235856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13594" e_stop="13241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACA</genome_strand>
        <mrna_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCANAATGGACAGAAAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207573" ref_strand="+" ref_description="SGN-E207573 [cLEC-32-G9]">
      <seq>tccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgtttgaggacctattcaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="14502" stop="12945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14202" g_stop="14156" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="186" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13493" g_stop="13245" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="435" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E207573" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14202" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</genome_strand>
        <mrna_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGTTTGAGGACCTATTCAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699545" ref_strand="+" ref_description="SGN-E699545 [FA10BH03]">
      <seq>ccgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccaccaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccaaagaagaaagtcattgaagtccatgttgaaaaaggaatgctaaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15766" stop="12952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15466" g_stop="15268" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="366" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13827" g_stop="13689" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="505" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13493" g_stop="13252" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="747" r_length="242" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E699545" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15466" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
          <exon e_start="13827" e_stop="13689"/>
          <exon e_start="13493" e_stop="13252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAA-GAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGAC</genome_strand>
        <mrna_strand>CCGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCACCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAAAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCTAAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333652" ref_strand="+" ref_description="SGN-E333652 [cTOD-22-D16]">
      <seq>ttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagaccttttggaggtggtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15763" stop="13854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15463" g_stop="15268" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="363" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E333652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15463" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAA-GAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGACCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200287" ref_strand="+" ref_description="SGN-E200287 [cLEC-12-H2]">
      <seq>tcttttcatactggtcttgaaaagaagttgaaattgacaaggatgtttggaagaggagggaaaaaaaagagtgataccacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaggatgaaatcaagaaagcttatagaaaaactgctatgaagaatcaccctgataagggcggtgatcctgaaaaggttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaacgaaggaatgggtggtggtggtggcacacatgatccattggacctctttaattcctactttagtggaagtccttttggaggtggcggtcgtacaggacaaagagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15762" stop="13854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15462" g_stop="15268" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14156" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="361" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E200287" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15462" e_stop="15268"/>
          <exon e_start="14321" e_stop="14156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TCTTTTCATACTGGTCTTGAAAAGAAGTTGAAATTGACAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATACCACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAGGATGAAATCAAGAAAGCTTATAGAAAAACTGCTATGAAGAATCACCCTGATAAGGGCGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAACGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTGGACCTCTTTAATTCCTACTTTAGTGGAAGTCCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281205" ref_strand="-" ref_description="SGN-E281205 [cLEL-1-C9](-)">
      <seq>gcacgagtcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaggggaaagagtgataacacaaagttttacgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15757" stop="13917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15464" g_stop="15268" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14321" g_stop="14217" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="302" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E281205" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15464" e_stop="15268"/>
          <exon e_start="14321" e_stop="14217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</genome_strand>
        <mrna_strand>GCACGAGTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAGGGGAAAGAGTGATAACACAAAGTTTTACGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718487" ref_strand="+" ref_description="SGN-E718487 [FC04DC08]">
      <seq>aatcggccgaattctagagcattctccactcttttcaatttctcatttcacctgagccttcaaagatgtgtatatataccccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctttgaagaatcaccctgataagggtggtgatcctgaaaaggtaatctttttgtttatttttgaagaaaggtgaagtctttgttctaatttgggagttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="15878" stop="14904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15586" g_stop="15204" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E718487" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15586" e_stop="15204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTCTAGAGCATTCTCCACTCTTTTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACCCCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTTTGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478949" ref_strand="+" ref_description="SGN-E478949 [cSTD-7-F24]">
      <seq>ctctaaaagaacatcttttcatccttccctcgtagtactaattcattataacgacttattataattttcgaaaaacttcacatatcatgtttttcatcatattaattacccaagttccaaaaattccaatttgcataccagttttctgttggatgaggaaatcccgtgattgactcttggttgcttgctctgaaaacgacgttacgctaccgaccctggccaccctataacgacaccgtttaaccccaccccacccccacctaagcattagctggcatcacccctcacactttgctgcttactcaaaacgcattactcctccttacagtactactgctactacttaccacttttttttttttgttttttttggatagattatagaaattcacacttggggttctaagattgttcaagatgagaattgggttgacttcaattttgaattttagttgacttattgatagatcgatctgtttcaaccaaacaggaaaaaacgaaggtgcaagtgggtaaagccaaagctagtatagcatgggtgtctcaggcaaatggattagagcactggtcggcttaaagaagtcagaaaagtctcattctttagaaaaagaggaaaataaatctggaggggactgggaagttttggcaccggagaaaacactctgttgagatcgattccaacctacttcaaaaggagctaacttataatgatgctggtggctggatcaattgaagatataagcagcacatcagttccagttgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19021" stop="22376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19321" g_stop="19768" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="502" r_length="442" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19769" i_stop="21353" i_length="1585">
            <donor d_prob="0.987" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21354" g_stop="21469" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="618" r_length="116" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21470" i_stop="21930" i_length="461">
            <donor d_prob="0.860" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21931" g_stop="22076" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="766" r_length="148" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E478949" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19321" e_stop="19768"/>
          <exon e_start="21354" e_stop="21469"/>
          <exon e_start="21931" e_stop="22076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTTCGAAAAATTACAAAATATCGTGTTTTTTCTTCAATATTATTTACCCAAGTTCCAAAAATTCCAATTTGCTTACCAGTTTTCTGTTGGATGAGGAAATCCCGTGATAGACTCTTGGTTGCTTGCTCTGAAAACGACGTTACGCTACCGTCCCTGACCACCCTAAAACGGCACCGTTTAACCCCACCCCCACCCCCACCTCAGCATTAGCTGGCACCACCCCTCACACTTTGCTGCTTAGCTCAAAACTCATTACTCCTCCTTATAGTAGTAGTGCTACTACTTGCCACTTTTTTTTTTTTTTTTTTTGGGGGATAGATTATAGAAATTCACACTTGGGGTTGCAAGATTGTTCAAGATGAGAAATGGGTTGACTTCAATTTTGAATTTTAGTTGACTTGTTGGTAGATCGATCTGTTTCAACCAAACGGGAAGAAACGAAGGTTGGTTTGCTTTCTTGTTGTTTTGTTGTTTTGGCATTTGATTTTAGTGTTGATGTGCAATTTAGGCAAGTGGGTTGTCTTTTTTGGTTTAATTTGAGTTTAGTACAGTCAACAATGGGGAACCCCAATTGTGGAATTTACACTGGTTATGTTGTTGTTGTTGTTTAAATTCAACAATGTTGGTTAATTGGTGATCTGAAGATCTGCATTGTTGTTGGGATTTGTTGTTTCTTTTGCTGGTTTTAGTTTTAGTTTGCAATTAGTTGGTGTTTTGGTAAAAAAGTTTTGTTAATTGAAGTGGGTTATTCTGATTTTTGTCTTATGGAATTGGAGTTTTTATGTGAATTGTAGTTAAGTTTGGAACTTTGGGTTAGATAGTTGATTTATGGATAGCCCTTGTTGAAAAATGTATGGCATTGTGGAGATCTCTTGAAAACGTTTCTTAAGGGATTGCTGAAGTTAGACTGAAGAATTAGAAATTCCATGCCGTAGGAGAGTGGTTTGCCGTGCTAGGAAACTAACCTTCTATCCATGTGAACATTGTGCCATGGAAAACTGGTTTTCGGATATATCTTTGGGTTTAATTGAGTTCAGTAAATTCAACAATGTTTGCTAATTGGCGATCTAAAGATCTGCATTGTTGTTGGGCTTAGTTGTGTTTTTGCATTTAGTGTGCAATTCAGCAATGTTTTGGTAAATAGTTTGGTAAATTGAAGTGGGTTCTTCTTATTTTTGGTTTGTTATCGCCCTAAATTGGTGAAATGAAAGTTACATGTTATGTATTGTGGAGTTCAGCTTTGATAGCAATAAAGTTTGGAACTTCGGGTTAGCTAGTTAATTTTATAGATAGCCCTTCTTGAGAAATGTATGGCATGGTGGAAATCTGTTGAAACATTGCCCTAAATTTGGGAAATGAAAGTTACATGTCATTGTTGTGGAGTTCAGCTAGGATAGTAATAAAGTTTGGAACTTTGGGCTAGATAGGAATTTATAGATAGTTCTTGTTGAGAAATGTATGGCTTGTGGAAATCTGTTGAAACATTGCCCAAGGGACTGCCGAAGTTATGAGATTTAATGTACATGACTATCTGACATGTGCTTGAAATTGGTACAATATACCAGGGAAATGTTATAGTTGTATTGACAGAACATGCTGTGTTCCTTTACTAACTGAAAAGATGATATTCTAAAACCTTTGGTCACAATTGGTGAGTGGTCACTTAAAAGGATGTTTATGATTTTTCTGATCATAATTTGGTTTATGTTGATCTGTTCTCTACTAATAACCATCTTTGAAAGTTACTCTACTGACACTGTCGTTGTGGCTGTTGATTTTGTGCTTTGTATTCATAATGTTACCTGGTTTCACCTCTTGGATAAGCTAAACAATTGCAGGTTTGCCTCTGAGTTGAGAACTAAATAGTTTCATCCCTCTATTTCAGTTACTTAAGCAGTCCATTTTACACAGCTCCTATCATAAAAGGAATTGAAACTTGTAGTTATAATGTGCTATTTCTTCTGGACTGGTGGTTGAGGTTTTCTCAGTTCACGAAATATTTAAATTCATGAAATTTTACTGTTTCAGGTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCTGGCAAATGGATTAGAGCACTGGTTGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCGGAAAAAGAGGAAAATGTGGGTAACATTTTCTTTTTGTTGTTATTTCTTTCCTGGGTATGTCTTTGATGGCTGAATCTGTTGGATTTCGTTGAGTATCTCAATCAATGCTTCTACATCTTCAGTAAACTACTTGTATATTCTTTGGTGTCATCTCTACATCATAAAGAGGCAGGCTTATTCTCGAGTAATGTCACTTTGTCAAAGAAGTTAGCTTTTGTCTTTGCACTTCAGTCCTCTGGAATTTGAAGTGACTGATGTTGAATATGTTCTCAATTGGTTACCTCATCTTTTCGCCAATTGACATGTATCAAACACGAGTTTTTTCCTTTGTACATGCGTAGATTATGATTGGATTTTGAAAGGTTTTTCAGTCTGTTGGTTTATGAAACAATATGTAACTTATTTCCGGATCATCCGTGCCTGTTTATGTCAAGGCGATGCAATCTCTAATCGGAACTTGTTTTATGCTGTAACAGAAATCTGGA-GGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGT-GCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTC</genome_strand>
        <mrna_strand>ATAATTTTCGAAAAACTTCACA-TATCATG-TTTTTCATC-ATATTAATTACCCAAGTTCCAAAAATTCCAATTTGCATACCAGTTTTCTGTTGGATGAGGAAATCCCGTGATTGACTCTTGGTTGCTTGCTCTGAAAACGACGTTACGCTACCGACCCTGGCCACCCTATAACGACACCGTTTAACCCCA-CCCCACCCCCACCTAAGCATTAGCTGGCATCACCCCTCACACTTTGCTGCTTA-CTCAAAACGCATTACTCCTCCTTACAGTACTACTGCTACTACTTACCACTTTTTTTTTTTTGTTTTTT-TTGGATAGATTATAGAAATTCACACTTGGGGTTCTAAGATTGTTCAAGATGAGAATTGGGTTGACTTCAATTTTGAATTTTAGTTGACTTATTGATAGATCGATCTGTTTCAACCAAACAGGAAAAAACGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCAGGCAAATGGATTAGAGCACTGGTCGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTTAGAAAAAGAGGAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGGAGGGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGGCTGGATCAATTGAAGATATAAGCAGCACATCAGTTCCAGTTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437785" ref_strand="+" ref_description="SGN-E437785 [cSTA-5-C21]">
      <seq>gagagaactagtcacgagtttttttttttttttttttggatagattatagaaattcacacttggggttctaagattgttcaagatgagaattgggttgacttcaattttgaattttagttgacttattgatagatcgatctgttacaaccaaacaggaaaaaccgaaggtgcaagtgggtaaagccaaagctagtatagcatgggtgtctcaggcaaatggattagagcactggtcggcttaaagaagtcagaaaagtctcattcttcagaaaaagaggaaaataaatctggagggactgggaagttttggcacaggagaaaacactctgttgagatcgattccaacctacttcaaaaggagctaacttataatgatgctggtgctggatcagttgaagatataagcagcacatcagttccagttgcttccagctccccttcaagttcacatcaattgcatcatgcccctctagttaagcaaaatatgagagaggagttggcagctatacgcatccaaacagctttcagaggatttctggcaaggcgagcttttcgggctttaaaaggattggtgagactacaagcccttgtcaggggtcatgcagtgagaaagcaagctgcaattaccctccgttgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19304" stop="24458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19601" g_stop="19768" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19769" i_stop="21353" i_length="1585">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21354" g_stop="21469" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="284" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21470" i_stop="21930" i_length="461">
            <donor d_prob="0.860" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21931" g_stop="22185" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="539" r_length="255" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22186" i_stop="24055" i_length="1870">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24056" g_stop="24158" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="642" r_length="103" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E437785" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19601" e_stop="19768"/>
          <exon e_start="21354" e_stop="21469"/>
          <exon e_start="21931" e_stop="22185"/>
          <exon e_start="24056" e_stop="24158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACTACTTGCCACTTTTTTTTTTTTTTTTTTTGGGGGATAGATTATAGAAATTCACACTTGGGGTTGCAAGATTGTTCAAGATGAGAAATGGGTTGACTTCAATTTTGAATTTTAGTTGACTTGTTGGTAGATCGATCTGTTTCAACCAAACGGGAAGAAACGAAGGTTGGTTTGCTTTCTTGTTGTTTTGTTGTTTTGGCATTTGATTTTAGTGTTGATGTGCAATTTAGGCAAGTGGGTTGTCTTTTTTGGTTTAATTTGAGTTTAGTACAGTCAACAATGGGGAACCCCAATTGTGGAATTTACACTGGTTATGTTGTTGTTGTTGTTTAAATTCAACAATGTTGGTTAATTGGTGATCTGAAGATCTGCATTGTTGTTGGGATTTGTTGTTTCTTTTGCTGGTTTTAGTTTTAGTTTGCAATTAGTTGGTGTTTTGGTAAAAAAGTTTTGTTAATTGAAGTGGGTTATTCTGATTTTTGTCTTATGGAATTGGAGTTTTTATGTGAATTGTAGTTAAGTTTGGAACTTTGGGTTAGATAGTTGATTTATGGATAGCCCTTGTTGAAAAATGTATGGCATTGTGGAGATCTCTTGAAAACGTTTCTTAAGGGATTGCTGAAGTTAGACTGAAGAATTAGAAATTCCATGCCGTAGGAGAGTGGTTTGCCGTGCTAGGAAACTAACCTTCTATCCATGTGAACATTGTGCCATGGAAAACTGGTTTTCGGATATATCTTTGGGTTTAATTGAGTTCAGTAAATTCAACAATGTTTGCTAATTGGCGATCTAAAGATCTGCATTGTTGTTGGGCTTAGTTGTGTTTTTGCATTTAGTGTGCAATTCAGCAATGTTTTGGTAAATAGTTTGGTAAATTGAAGTGGGTTCTTCTTATTTTTGGTTTGTTATCGCCCTAAATTGGTGAAATGAAAGTTACATGTTATGTATTGTGGAGTTCAGCTTTGATAGCAATAAAGTTTGGAACTTCGGGTTAGCTAGTTAATTTTATAGATAGCCCTTCTTGAGAAATGTATGGCATGGTGGAAATCTGTTGAAACATTGCCCTAAATTTGGGAAATGAAAGTTACATGTCATTGTTGTGGAGTTCAGCTAGGATAGTAATAAAGTTTGGAACTTTGGGCTAGATAGGAATTTATAGATAGTTCTTGTTGAGAAATGTATGGCTTGTGGAAATCTGTTGAAACATTGCCCAAGGGACTGCCGAAGTTATGAGATTTAATGTACATGACTATCTGACATGTGCTTGAAATTGGTACAATATACCAGGGAAATGTTATAGTTGTATTGACAGAACATGCTGTGTTCCTTTACTAACTGAAAAGATGATATTCTAAAACCTTTGGTCACAATTGGTGAGTGGTCACTTAAAAGGATGTTTATGATTTTTCTGATCATAATTTGGTTTATGTTGATCTGTTCTCTACTAATAACCATCTTTGAAAGTTACTCTACTGACACTGTCGTTGTGGCTGTTGATTTTGTGCTTTGTATTCATAATGTTACCTGGTTTCACCTCTTGGATAAGCTAAACAATTGCAGGTTTGCCTCTGAGTTGAGAACTAAATAGTTTCATCCCTCTATTTCAGTTACTTAAGCAGTCCATTTTACACAGCTCCTATCATAAAAGGAATTGAAACTTGTAGTTATAATGTGCTATTTCTTCTGGACTGGTGGTTGAGGTTTTCTCAGTTCACGAAATATTTAAATTCATGAAATTTTACTGTTTCAGGTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCTGGCAAATGGATTAGAGCACTGGTTGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCGGAAAAAGAGGAAAATGTGGGTAACATTTTCTTTTTGTTGTTATTTCTTTCCTGGGTATGTCTTTGATGGCTGAATCTGTTGGATTTCGTTGAGTATCTCAATCAATGCTTCTACATCTTCAGTAAACTACTTGTATATTCTTTGGTGTCATCTCTACATCATAAAGAGGCAGGCTTATTCTCGAGTAATGTCACTTTGTCAAAGAAGTTAGCTTTTGTCTTTGCACTTCAGTCCTCTGGAATTTGAAGTGACTGATGTTGAATATGTTCTCAATTGGTTACCTCATCTTTTCGCCAATTGACATGTATCAAACACGAGTTTTTTCCTTTGTACATGCGTAGATTATGATTGGATTTTGAAAGGTTTTTCAGTCTGTTGGTTTATGAAACAATATGTAACTTATTTCCGGATCATCCGTGCCTGTTTATGTCAAGGCGATGCAATCTCTAATCGGAACTTGTTTTATGCTGTAACAGAAATCTGGAGGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAATTGGCAGCTATACGCATCCAAACAGCTTTTAGAGGATTTCTGGTACTGAATTTGCTATTAGCTTGTAAATTTAACTAACTGAAATATATGCCCGCTTAGTTGTGCTTTTGGTCCTGGTACACTTCTTTTCGTAGAATGTATATGGGTCAAGCACTTACCACAGCATAATTGAACTACTTGAGTTCTATCTGGAACTCCCTTTAACGATTCAAGATGATATTTAGGGTTTATAATAGATGCCTTTTGCCATAGTTATGTTAGAAAGCAAAACAAAATTTATTATTGATGAAGTAGAGAAAATACAAGAGACGGTCTTCTGTTAAAGTTATCCTTATGAGTTTCGTGGCATAATTTCTAGCGCATATCCTGAGTATATAAGAAAGAGATTCTCAGTACTACAGAAAATATATTTTGCTAAAGTCACTCAAATTACAGTAAACTCCTAGAGCCAAGGGTCTATCGGAAACAATCTCTCTACCTCACACGAAGTATGGGTAAGGTCTGCGTAAACCTCACCTTTCCTGACCCACTTGTGGACTGTGGAATCACATTGGGCATGTTGTTGTTGTTGTAAACTCAAGTCCAAATTTAACCATCATGTCTTGGTACTCCCTAGTTTTAATAGTTTGCATATATATAATGATAGGATCGGACTAAAACATACTTCTTTCAGCTAATTATGTTAGGTGTTATATGCCCATTTTTAAAACATAGATATAGGTGATGTCAATGTCTATATGCAATAAAAACTAATTCTTTCAGCTATTATTGACTGTCTTAGAAACAAATTCTTCTACCATTAACCACTACATAGGATAGGGTAGCCTAAATAGACCTGAGATAGGAACTTTCAAGAATTTGAGCAATTGACATCCTTAATGACTGTAACACAATCTTTTGGGTAAGAGCTTACTTACTTGTGATCTCTTTCTGCCAATGGTTAATGTCGTCATGTATGGAAAGCTGTATGACTATTCCTCTATTGCAGAAATTTTGTGGGACCAAAACTTGTCAAAAAAGAAGTTATTTCTGGGATCAGATTGCTAAATACAAGTCCACCCCTTGCCCAATCAAGCAAATGGAAATCAATAATCTACATGATCTAGTGGATTGCAAATGAGAACCTAACTAGAATTTCCTCATCTAGATGCTTGGTAGAATGGGCTTTGGAAGCAAGTAGAATAGTTGGAATAAATACTACATTAGTCTGTGAAGTTCTCTATCCTAATCAATAGAGCTCCCAATGGCTTTTTTTCCTCTCAGAGAAGCCCTCGGGCAACGAGATCTCATATCCCCATTTCTATTTATCATTACTATGGAAGGTATGAGCAGTTTAATTAAGTAGGTGACTTGAGCAACATGAAGATTACACATCTTTAGTATACAGGGAGATCAACATGGATCACACATCTTAGGGTTGTGTATTGGTTTGGTTTGATTTTGAAGTTTATCGGTTCTATTTATTGATTATCAGTTTGTAAACATACTAAACCATTATAGAATCGTTAAGATAGCGGTTTATTGGTTTGGTTATCGATTTAAAATCACTTAGAAAACAAAGTGATAAACCAAAGAAACCATGCACATGAGTTAGAAGATTCCAATATGGGGAAAAATATTACAATATCAGCAGATGAGTTGTAGAGAATGGGTGTATGTTTGCAACATTTTGGCAGGGAAACCTGCATAACTCCAGTTTCCAATTTGGTAGCTGACTCATAGATTAAGCTTTTGGATATGAACGAACCTTCTGACCCCAATATTGAAATAATATGTTAACCGCTGTGTTTTTAGTTTCTTATGAATCTTATCAGTTGATGAGTAGAAACATACTAAGAAAATTTAAGAGTTTGTTAACTAGGAAAAGCAACAGCAATTAAATCTTATTTGTTGATATCTTGGCACTGGTCAGGCAAGGCGAGCTCTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCGGTGAGAAAGCAAGCTGCGATTACCCTCCGTTGCATGC</genome_strand>
        <mrna_strand>GAGAGAACTAGTCACGAGTTTTTTTTTTTTTTTTTTTGGATAGATTATAGAAATTCACACTTGGGGTTCTAAGATTGTTCAAGATGAGAATTGGGTTGACTTCAATTTTGAATTTTAGTTGACTTATTGATAGATCGATCTGTTACAACCAAACAGGAAAAACCGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCAGGCAAATGGATTAGAGCACTGGTCGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCAGAAAAAGAGGAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGGAGGGACTGGGAAGTTTTGGCACAGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGTTCCAGTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAGTTGGCAGCTATACGCATCCAAACAGCTTTCAGAGGATTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCGAGCTTTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCAGTGAGAAAGCAAGCTGCAATTACCCTCCGTTGCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620796" ref_strand="+" ref_description="SGN-E620796 [71501]">
      <seq>tttttttttgtttttttggatagattatagaaattcacacttggggttctaagattgttcaagatgagaattgggttgacttcaattttgaattttagttgacttattgatagatcgatctgttacaaccaaacaggaaaaaccgaaggtgcaagtgggtaaagccaaagctagtatagcatgggtgtctcaggcaaatggattagagcactggtcggcttaaagaagtcagaaaagtctcattcttcagaaaaagaggaaaataaatctggagggactgggaagttttggcacaggagaaaacactctgttgagatcgattccaacctacttcaaaaggagctaacttataatgatgctggtgctggatcagttgaagatataagcagcacatcagttccagttgcttccagctccccttcaagttcacatcaattgcatcatgcccctctagttaagcaaaatatgagagaggagttggcagctatacgcatccaaacagctttcagaggatttctggcaaggcgagcttttcgggctttaaaaggattggtgagactacaagcccttgtcaggggtcatgcagtgagaaagcaagctgcaattaccctccgttgcatgcaagctttggtgagagttcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19338" stop="24480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19621" g_stop="19768" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19769" i_stop="21353" i_length="1585">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21354" g_stop="21469" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="264" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21470" i_stop="21930" i_length="461">
            <donor d_prob="0.860" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21931" g_stop="22185" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="519" r_length="255" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22186" i_stop="24055" i_length="1870">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24056" g_stop="24180" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="644" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E620796" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19621" e_stop="19768"/>
          <exon e_start="21354" e_stop="21469"/>
          <exon e_start="21931" e_stop="22185"/>
          <exon e_start="24056" e_stop="24180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTGGGGGATAGATTATAGAAATTCACACTTGGGGTTGCAAGATTGTTCAAGATGAGAAATGGGTTGACTTCAATTTTGAATTTTAGTTGACTTGTTGGTAGATCGATCTGTTTCAACCAAACGGGAAGAAACGAAGGTTGGTTTGCTTTCTTGTTGTTTTGTTGTTTTGGCATTTGATTTTAGTGTTGATGTGCAATTTAGGCAAGTGGGTTGTCTTTTTTGGTTTAATTTGAGTTTAGTACAGTCAACAATGGGGAACCCCAATTGTGGAATTTACACTGGTTATGTTGTTGTTGTTGTTTAAATTCAACAATGTTGGTTAATTGGTGATCTGAAGATCTGCATTGTTGTTGGGATTTGTTGTTTCTTTTGCTGGTTTTAGTTTTAGTTTGCAATTAGTTGGTGTTTTGGTAAAAAAGTTTTGTTAATTGAAGTGGGTTATTCTGATTTTTGTCTTATGGAATTGGAGTTTTTATGTGAATTGTAGTTAAGTTTGGAACTTTGGGTTAGATAGTTGATTTATGGATAGCCCTTGTTGAAAAATGTATGGCATTGTGGAGATCTCTTGAAAACGTTTCTTAAGGGATTGCTGAAGTTAGACTGAAGAATTAGAAATTCCATGCCGTAGGAGAGTGGTTTGCCGTGCTAGGAAACTAACCTTCTATCCATGTGAACATTGTGCCATGGAAAACTGGTTTTCGGATATATCTTTGGGTTTAATTGAGTTCAGTAAATTCAACAATGTTTGCTAATTGGCGATCTAAAGATCTGCATTGTTGTTGGGCTTAGTTGTGTTTTTGCATTTAGTGTGCAATTCAGCAATGTTTTGGTAAATAGTTTGGTAAATTGAAGTGGGTTCTTCTTATTTTTGGTTTGTTATCGCCCTAAATTGGTGAAATGAAAGTTACATGTTATGTATTGTGGAGTTCAGCTTTGATAGCAATAAAGTTTGGAACTTCGGGTTAGCTAGTTAATTTTATAGATAGCCCTTCTTGAGAAATGTATGGCATGGTGGAAATCTGTTGAAACATTGCCCTAAATTTGGGAAATGAAAGTTACATGTCATTGTTGTGGAGTTCAGCTAGGATAGTAATAAAGTTTGGAACTTTGGGCTAGATAGGAATTTATAGATAGTTCTTGTTGAGAAATGTATGGCTTGTGGAAATCTGTTGAAACATTGCCCAAGGGACTGCCGAAGTTATGAGATTTAATGTACATGACTATCTGACATGTGCTTGAAATTGGTACAATATACCAGGGAAATGTTATAGTTGTATTGACAGAACATGCTGTGTTCCTTTACTAACTGAAAAGATGATATTCTAAAACCTTTGGTCACAATTGGTGAGTGGTCACTTAAAAGGATGTTTATGATTTTTCTGATCATAATTTGGTTTATGTTGATCTGTTCTCTACTAATAACCATCTTTGAAAGTTACTCTACTGACACTGTCGTTGTGGCTGTTGATTTTGTGCTTTGTATTCATAATGTTACCTGGTTTCACCTCTTGGATAAGCTAAACAATTGCAGGTTTGCCTCTGAGTTGAGAACTAAATAGTTTCATCCCTCTATTTCAGTTACTTAAGCAGTCCATTTTACACAGCTCCTATCATAAAAGGAATTGAAACTTGTAGTTATAATGTGCTATTTCTTCTGGACTGGTGGTTGAGGTTTTCTCAGTTCACGAAATATTTAAATTCATGAAATTTTACTGTTTCAGGTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCTGGCAAATGGATTAGAGCACTGGTTGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCGGAAAAAGAGGAAAATGTGGGTAACATTTTCTTTTTGTTGTTATTTCTTTCCTGGGTATGTCTTTGATGGCTGAATCTGTTGGATTTCGTTGAGTATCTCAATCAATGCTTCTACATCTTCAGTAAACTACTTGTATATTCTTTGGTGTCATCTCTACATCATAAAGAGGCAGGCTTATTCTCGAGTAATGTCACTTTGTCAAAGAAGTTAGCTTTTGTCTTTGCACTTCAGTCCTCTGGAATTTGAAGTGACTGATGTTGAATATGTTCTCAATTGGTTACCTCATCTTTTCGCCAATTGACATGTATCAAACACGAGTTTTTTCCTTTGTACATGCGTAGATTATGATTGGATTTTGAAAGGTTTTTCAGTCTGTTGGTTTATGAAACAATATGTAACTTATTTCCGGATCATCCGTGCCTGTTTATGTCAAGGCGATGCAATCTCTAATCGGAACTTGTTTTATGCTGTAACAGAAATCTGGAGGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAATTGGCAGCTATACGCATCCAAACAGCTTTTAGAGGATTTCTGGTACTGAATTTGCTATTAGCTTGTAAATTTAACTAACTGAAATATATGCCCGCTTAGTTGTGCTTTTGGTCCTGGTACACTTCTTTTCGTAGAATGTATATGGGTCAAGCACTTACCACAGCATAATTGAACTACTTGAGTTCTATCTGGAACTCCCTTTAACGATTCAAGATGATATTTAGGGTTTATAATAGATGCCTTTTGCCATAGTTATGTTAGAAAGCAAAACAAAATTTATTATTGATGAAGTAGAGAAAATACAAGAGACGGTCTTCTGTTAAAGTTATCCTTATGAGTTTCGTGGCATAATTTCTAGCGCATATCCTGAGTATATAAGAAAGAGATTCTCAGTACTACAGAAAATATATTTTGCTAAAGTCACTCAAATTACAGTAAACTCCTAGAGCCAAGGGTCTATCGGAAACAATCTCTCTACCTCACACGAAGTATGGGTAAGGTCTGCGTAAACCTCACCTTTCCTGACCCACTTGTGGACTGTGGAATCACATTGGGCATGTTGTTGTTGTTGTAAACTCAAGTCCAAATTTAACCATCATGTCTTGGTACTCCCTAGTTTTAATAGTTTGCATATATATAATGATAGGATCGGACTAAAACATACTTCTTTCAGCTAATTATGTTAGGTGTTATATGCCCATTTTTAAAACATAGATATAGGTGATGTCAATGTCTATATGCAATAAAAACTAATTCTTTCAGCTATTATTGACTGTCTTAGAAACAAATTCTTCTACCATTAACCACTACATAGGATAGGGTAGCCTAAATAGACCTGAGATAGGAACTTTCAAGAATTTGAGCAATTGACATCCTTAATGACTGTAACACAATCTTTTGGGTAAGAGCTTACTTACTTGTGATCTCTTTCTGCCAATGGTTAATGTCGTCATGTATGGAAAGCTGTATGACTATTCCTCTATTGCAGAAATTTTGTGGGACCAAAACTTGTCAAAAAAGAAGTTATTTCTGGGATCAGATTGCTAAATACAAGTCCACCCCTTGCCCAATCAAGCAAATGGAAATCAATAATCTACATGATCTAGTGGATTGCAAATGAGAACCTAACTAGAATTTCCTCATCTAGATGCTTGGTAGAATGGGCTTTGGAAGCAAGTAGAATAGTTGGAATAAATACTACATTAGTCTGTGAAGTTCTCTATCCTAATCAATAGAGCTCCCAATGGCTTTTTTTCCTCTCAGAGAAGCCCTCGGGCAACGAGATCTCATATCCCCATTTCTATTTATCATTACTATGGAAGGTATGAGCAGTTTAATTAAGTAGGTGACTTGAGCAACATGAAGATTACACATCTTTAGTATACAGGGAGATCAACATGGATCACACATCTTAGGGTTGTGTATTGGTTTGGTTTGATTTTGAAGTTTATCGGTTCTATTTATTGATTATCAGTTTGTAAACATACTAAACCATTATAGAATCGTTAAGATAGCGGTTTATTGGTTTGGTTATCGATTTAAAATCACTTAGAAAACAAAGTGATAAACCAAAGAAACCATGCACATGAGTTAGAAGATTCCAATATGGGGAAAAATATTACAATATCAGCAGATGAGTTGTAGAGAATGGGTGTATGTTTGCAACATTTTGGCAGGGAAACCTGCATAACTCCAGTTTCCAATTTGGTAGCTGACTCATAGATTAAGCTTTTGGATATGAACGAACCTTCTGACCCCAATATTGAAATAATATGTTAACCGCTGTGTTTTTAGTTTCTTATGAATCTTATCAGTTGATGAGTAGAAACATACTAAGAAAATTTAAGAGTTTGTTAACTAGGAAAAGCAACAGCAATTAAATCTTATTTGTTGATATCTTGGCACTGGTCAGGCAAGGCGAGCTCTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCGGTGAGAAAGCAAGCTGCGATTACCCTCCGTTGCATGCAAGCTTTGGTGAGAGTTCAGGC</genome_strand>
        <mrna_strand>TTTTTTTTTGTTTTTTTGGATAGATTATAGAAATTCACACTTGGGGTTCTAAGATTGTTCAAGATGAGAATTGGGTTGACTTCAATTTTGAATTTTAGTTGACTTATTGATAGATCGATCTGTTACAACCAAACAGGAAAAACCGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCAGGCAAATGGATTAGAGCACTGGTCGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCAGAAAAAGAGGAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGGAGGGACTGGGAAGTTTTGGCACAGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGTTCCAGTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAGTTGGCAGCTATACGCATCCAAACAGCTTTCAGAGGATTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCGAGCTTTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCAGTGAGAAAGCAAGCTGCAATTACCCTCCGTTGCATGCAAGCTTTGGTGAGAGTTCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476688" ref_strand="+" ref_description="SGN-E476688 [cSTB-45-N1]">
      <seq>ggaaactagtctgagtttttttttgtttttttggatagattatagaaattcacacttggggttctaagattgttcaagatgagaattgggttgacttcaattttgaattttagttgacttattgatagatcgatctgttacaaccaaacaggaaaaaccgaaggtgcaagtgggtaaagccaaagctagtatagcatgggtgtctcaggcaaatggattagagcactggtcggcttaaagaagtcagaaaagtctcattcttcagaaaaagaggaaaataaatctggagggactgggaagttttggcacaggagaaaacactctgttgagatcgattccaacctacttcaaaaggagctaacttataatgatgctggtgctggatcagttgaagatataagcagcacatcagttccagttgcttccagctccccttcaagttcacatcaattgcatcatgcccctctagttaagcaaaatatgagagaggagttggcagctatacgcatccaaacagctttcagaggatttctggcaaggcgagcttttcgggctttaaaaggattggtgagactacaagcccttgtcaggggtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19338" stop="24419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19644" g_stop="19768" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="163" r_length="125" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19769" i_stop="21353" i_length="1585">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21354" g_stop="21469" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="279" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21470" i_stop="21930" i_length="461">
            <donor d_prob="0.860" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21931" g_stop="22185" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="534" r_length="255" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22186" i_stop="24055" i_length="1870">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24056" g_stop="24119" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="598" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="32" polyA_stop="16"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E476688" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19644" e_stop="19768"/>
          <exon e_start="21354" e_stop="21469"/>
          <exon e_start="21931" e_stop="22185"/>
          <exon e_start="24056" e_stop="24119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATAGAAATTCACACTTGGGGTTGCAAGATTGTTCAAGATGAGAAATGGGTTGACTTCAATTTTGAATTTTAGTTGACTTGTTGGTAGATCGATCTGTTTCAACCAAACGGGAAGAAACGAAGGTTGGTTTGCTTTCTTGTTGTTTTGTTGTTTTGGCATTTGATTTTAGTGTTGATGTGCAATTTAGGCAAGTGGGTTGTCTTTTTTGGTTTAATTTGAGTTTAGTACAGTCAACAATGGGGAACCCCAATTGTGGAATTTACACTGGTTATGTTGTTGTTGTTGTTTAAATTCAACAATGTTGGTTAATTGGTGATCTGAAGATCTGCATTGTTGTTGGGATTTGTTGTTTCTTTTGCTGGTTTTAGTTTTAGTTTGCAATTAGTTGGTGTTTTGGTAAAAAAGTTTTGTTAATTGAAGTGGGTTATTCTGATTTTTGTCTTATGGAATTGGAGTTTTTATGTGAATTGTAGTTAAGTTTGGAACTTTGGGTTAGATAGTTGATTTATGGATAGCCCTTGTTGAAAAATGTATGGCATTGTGGAGATCTCTTGAAAACGTTTCTTAAGGGATTGCTGAAGTTAGACTGAAGAATTAGAAATTCCATGCCGTAGGAGAGTGGTTTGCCGTGCTAGGAAACTAACCTTCTATCCATGTGAACATTGTGCCATGGAAAACTGGTTTTCGGATATATCTTTGGGTTTAATTGAGTTCAGTAAATTCAACAATGTTTGCTAATTGGCGATCTAAAGATCTGCATTGTTGTTGGGCTTAGTTGTGTTTTTGCATTTAGTGTGCAATTCAGCAATGTTTTGGTAAATAGTTTGGTAAATTGAAGTGGGTTCTTCTTATTTTTGGTTTGTTATCGCCCTAAATTGGTGAAATGAAAGTTACATGTTATGTATTGTGGAGTTCAGCTTTGATAGCAATAAAGTTTGGAACTTCGGGTTAGCTAGTTAATTTTATAGATAGCCCTTCTTGAGAAATGTATGGCATGGTGGAAATCTGTTGAAACATTGCCCTAAATTTGGGAAATGAAAGTTACATGTCATTGTTGTGGAGTTCAGCTAGGATAGTAATAAAGTTTGGAACTTTGGGCTAGATAGGAATTTATAGATAGTTCTTGTTGAGAAATGTATGGCTTGTGGAAATCTGTTGAAACATTGCCCAAGGGACTGCCGAAGTTATGAGATTTAATGTACATGACTATCTGACATGTGCTTGAAATTGGTACAATATACCAGGGAAATGTTATAGTTGTATTGACAGAACATGCTGTGTTCCTTTACTAACTGAAAAGATGATATTCTAAAACCTTTGGTCACAATTGGTGAGTGGTCACTTAAAAGGATGTTTATGATTTTTCTGATCATAATTTGGTTTATGTTGATCTGTTCTCTACTAATAACCATCTTTGAAAGTTACTCTACTGACACTGTCGTTGTGGCTGTTGATTTTGTGCTTTGTATTCATAATGTTACCTGGTTTCACCTCTTGGATAAGCTAAACAATTGCAGGTTTGCCTCTGAGTTGAGAACTAAATAGTTTCATCCCTCTATTTCAGTTACTTAAGCAGTCCATTTTACACAGCTCCTATCATAAAAGGAATTGAAACTTGTAGTTATAATGTGCTATTTCTTCTGGACTGGTGGTTGAGGTTTTCTCAGTTCACGAAATATTTAAATTCATGAAATTTTACTGTTTCAGGTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCTGGCAAATGGATTAGAGCACTGGTTGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCGGAAAAAGAGGAAAATGTGGGTAACATTTTCTTTTTGTTGTTATTTCTTTCCTGGGTATGTCTTTGATGGCTGAATCTGTTGGATTTCGTTGAGTATCTCAATCAATGCTTCTACATCTTCAGTAAACTACTTGTATATTCTTTGGTGTCATCTCTACATCATAAAGAGGCAGGCTTATTCTCGAGTAATGTCACTTTGTCAAAGAAGTTAGCTTTTGTCTTTGCACTTCAGTCCTCTGGAATTTGAAGTGACTGATGTTGAATATGTTCTCAATTGGTTACCTCATCTTTTCGCCAATTGACATGTATCAAACACGAGTTTTTTCCTTTGTACATGCGTAGATTATGATTGGATTTTGAAAGGTTTTTCAGTCTGTTGGTTTATGAAACAATATGTAACTTATTTCCGGATCATCCGTGCCTGTTTATGTCAAGGCGATGCAATCTCTAATCGGAACTTGTTTTATGCTGTAACAGAAATCTGGAGGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAATTGGCAGCTATACGCATCCAAACAGCTTTTAGAGGATTTCTGGTACTGAATTTGCTATTAGCTTGTAAATTTAACTAACTGAAATATATGCCCGCTTAGTTGTGCTTTTGGTCCTGGTACACTTCTTTTCGTAGAATGTATATGGGTCAAGCACTTACCACAGCATAATTGAACTACTTGAGTTCTATCTGGAACTCCCTTTAACGATTCAAGATGATATTTAGGGTTTATAATAGATGCCTTTTGCCATAGTTATGTTAGAAAGCAAAACAAAATTTATTATTGATGAAGTAGAGAAAATACAAGAGACGGTCTTCTGTTAAAGTTATCCTTATGAGTTTCGTGGCATAATTTCTAGCGCATATCCTGAGTATATAAGAAAGAGATTCTCAGTACTACAGAAAATATATTTTGCTAAAGTCACTCAAATTACAGTAAACTCCTAGAGCCAAGGGTCTATCGGAAACAATCTCTCTACCTCACACGAAGTATGGGTAAGGTCTGCGTAAACCTCACCTTTCCTGACCCACTTGTGGACTGTGGAATCACATTGGGCATGTTGTTGTTGTTGTAAACTCAAGTCCAAATTTAACCATCATGTCTTGGTACTCCCTAGTTTTAATAGTTTGCATATATATAATGATAGGATCGGACTAAAACATACTTCTTTCAGCTAATTATGTTAGGTGTTATATGCCCATTTTTAAAACATAGATATAGGTGATGTCAATGTCTATATGCAATAAAAACTAATTCTTTCAGCTATTATTGACTGTCTTAGAAACAAATTCTTCTACCATTAACCACTACATAGGATAGGGTAGCCTAAATAGACCTGAGATAGGAACTTTCAAGAATTTGAGCAATTGACATCCTTAATGACTGTAACACAATCTTTTGGGTAAGAGCTTACTTACTTGTGATCTCTTTCTGCCAATGGTTAATGTCGTCATGTATGGAAAGCTGTATGACTATTCCTCTATTGCAGAAATTTTGTGGGACCAAAACTTGTCAAAAAAGAAGTTATTTCTGGGATCAGATTGCTAAATACAAGTCCACCCCTTGCCCAATCAAGCAAATGGAAATCAATAATCTACATGATCTAGTGGATTGCAAATGAGAACCTAACTAGAATTTCCTCATCTAGATGCTTGGTAGAATGGGCTTTGGAAGCAAGTAGAATAGTTGGAATAAATACTACATTAGTCTGTGAAGTTCTCTATCCTAATCAATAGAGCTCCCAATGGCTTTTTTTCCTCTCAGAGAAGCCCTCGGGCAACGAGATCTCATATCCCCATTTCTATTTATCATTACTATGGAAGGTATGAGCAGTTTAATTAAGTAGGTGACTTGAGCAACATGAAGATTACACATCTTTAGTATACAGGGAGATCAACATGGATCACACATCTTAGGGTTGTGTATTGGTTTGGTTTGATTTTGAAGTTTATCGGTTCTATTTATTGATTATCAGTTTGTAAACATACTAAACCATTATAGAATCGTTAAGATAGCGGTTTATTGGTTTGGTTATCGATTTAAAATCACTTAGAAAACAAAGTGATAAACCAAAGAAACCATGCACATGAGTTAGAAGATTCCAATATGGGGAAAAATATTACAATATCAGCAGATGAGTTGTAGAGAATGGGTGTATGTTTGCAACATTTTGGCAGGGAAACCTGCATAACTCCAGTTTCCAATTTGGTAGCTGACTCATAGATTAAGCTTTTGGATATGAACGAACCTTCTGACCCCAATATTGAAATAATATGTTAACCGCTGTGTTTTTAGTTTCTTATGAATCTTATCAGTTGATGAGTAGAAACATACTAAGAAAATTTAAGAGTTTGTTAACTAGGAAAAGCAACAGCAATTAAATCTTATTTGTTGATATCTTGGCACTGGTCAGGCAAGGCGAGCTCTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATG</genome_strand>
        <mrna_strand>ATTATAGAAATTCACACTTGGGGTTCTAAGATTGTTCAAGATGAGAATTGGGTTGACTTCAATTTTGAATTTTAGTTGACTTATTGATAGATCGATCTGTTACAACCAAACAGGAAAAACCGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCAGGCAAATGGATTAGAGCACTGGTCGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCAGAAAAAGAGGAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCTGGAGGGACTGGGAAGTTTTGGCACAGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGTTCCAGTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAGTTGGCAGCTATACGCATCCAAACAGCTTTCAGAGGATTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCGAGCTTTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444652" ref_strand="+" ref_description="SGN-E444652 [cSTA-43-P21]">
      <seq>ttgagatcgattccaacctacttcaaaaggagctaacttataatgatgctggtgctggatcagttgaagatataagcagcacatcagttccagttgcttccagctccccttcaagttcacatcaattgcatcatgcccctctagttaagcaaaatatgagagaggagttggcagctatacgcatccaaacagctttcagaggatttctggcaaggcgagcttttcgggctttaaaaggattggtgagactacaagcccttgtcaggggtcatgcagtgagaaagcaagctgcaattaccctccgttgcatgcaagctttggtgagagttcaagcacgtgtccgagcaagacgtgttcgcatgtcactggaaagtcaaacagaacagcagaaacttgaacagcaattagaacatgatgctcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="21677" stop="24569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21977" g_stop="22185" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22186" i_stop="24055" i_length="1870">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24056" g_stop="24269" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="423" r_length="214" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E444652" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21977" e_stop="22185"/>
          <exon e_start="24056" e_stop="24269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAATTGGCAGCTATACGCATCCAAACAGCTTTTAGAGGATTTCTGGTACTGAATTTGCTATTAGCTTGTAAATTTAACTAACTGAAATATATGCCCGCTTAGTTGTGCTTTTGGTCCTGGTACACTTCTTTTCGTAGAATGTATATGGGTCAAGCACTTACCACAGCATAATTGAACTACTTGAGTTCTATCTGGAACTCCCTTTAACGATTCAAGATGATATTTAGGGTTTATAATAGATGCCTTTTGCCATAGTTATGTTAGAAAGCAAAACAAAATTTATTATTGATGAAGTAGAGAAAATACAAGAGACGGTCTTCTGTTAAAGTTATCCTTATGAGTTTCGTGGCATAATTTCTAGCGCATATCCTGAGTATATAAGAAAGAGATTCTCAGTACTACAGAAAATATATTTTGCTAAAGTCACTCAAATTACAGTAAACTCCTAGAGCCAAGGGTCTATCGGAAACAATCTCTCTACCTCACACGAAGTATGGGTAAGGTCTGCGTAAACCTCACCTTTCCTGACCCACTTGTGGACTGTGGAATCACATTGGGCATGTTGTTGTTGTTGTAAACTCAAGTCCAAATTTAACCATCATGTCTTGGTACTCCCTAGTTTTAATAGTTTGCATATATATAATGATAGGATCGGACTAAAACATACTTCTTTCAGCTAATTATGTTAGGTGTTATATGCCCATTTTTAAAACATAGATATAGGTGATGTCAATGTCTATATGCAATAAAAACTAATTCTTTCAGCTATTATTGACTGTCTTAGAAACAAATTCTTCTACCATTAACCACTACATAGGATAGGGTAGCCTAAATAGACCTGAGATAGGAACTTTCAAGAATTTGAGCAATTGACATCCTTAATGACTGTAACACAATCTTTTGGGTAAGAGCTTACTTACTTGTGATCTCTTTCTGCCAATGGTTAATGTCGTCATGTATGGAAAGCTGTATGACTATTCCTCTATTGCAGAAATTTTGTGGGACCAAAACTTGTCAAAAAAGAAGTTATTTCTGGGATCAGATTGCTAAATACAAGTCCACCCCTTGCCCAATCAAGCAAATGGAAATCAATAATCTACATGATCTAGTGGATTGCAAATGAGAACCTAACTAGAATTTCCTCATCTAGATGCTTGGTAGAATGGGCTTTGGAAGCAAGTAGAATAGTTGGAATAAATACTACATTAGTCTGTGAAGTTCTCTATCCTAATCAATAGAGCTCCCAATGGCTTTTTTTCCTCTCAGAGAAGCCCTCGGGCAACGAGATCTCATATCCCCATTTCTATTTATCATTACTATGGAAGGTATGAGCAGTTTAATTAAGTAGGTGACTTGAGCAACATGAAGATTACACATCTTTAGTATACAGGGAGATCAACATGGATCACACATCTTAGGGTTGTGTATTGGTTTGGTTTGATTTTGAAGTTTATCGGTTCTATTTATTGATTATCAGTTTGTAAACATACTAAACCATTATAGAATCGTTAAGATAGCGGTTTATTGGTTTGGTTATCGATTTAAAATCACTTAGAAAACAAAGTGATAAACCAAAGAAACCATGCACATGAGTTAGAAGATTCCAATATGGGGAAAAATATTACAATATCAGCAGATGAGTTGTAGAGAATGGGTGTATGTTTGCAACATTTTGGCAGGGAAACCTGCATAACTCCAGTTTCCAATTTGGTAGCTGACTCATAGATTAAGCTTTTGGATATGAACGAACCTTCTGACCCCAATATTGAAATAATATGTTAACCGCTGTGTTTTTAGTTTCTTATGAATCTTATCAGTTGATGAGTAGAAACATACTAAGAAAATTTAAGAGTTTGTTAACTAGGAAAAGCAACAGCAATTAAATCTTATTTGTTGATATCTTGGCACTGGTCAGGCAAGGCGAGCTCTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCGGTGAGAAAGCAAGCTGCGATTACCCTCCGTTGCATGCAAGCTTTGGTGAGAGTTCAGGCACGTGTCCGAGCAAGACGTGTTCGCATGTCACTGGAAAGTCAAACTGAACAGCAGAAGGTTGAACAACAATTAGAACATGACGCTCGTG</genome_strand>
        <mrna_strand>TTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGTTCCAGTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAGTTGGCAGCTATACGCATCCAAACAGCTTTCAGAGGATTTCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGCGAGCTTTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCAGTGAGAAAGCAAGCTGCAATTACCCTCCGTTGCATGCAAGCTTTGGTGAGAGTTCAAGCACGTGTCCGAGCAAGACGTGTTCGCATGTCACTGGAAAGTCAAACAGAACAGCAGAAACTTGAACAGCAATTAGAACATGATGCTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727575" ref_strand="+" ref_description="SGN-E727575 [LA15AD09]">
      <seq>cttgaacaacaattagaacatgacgctcgtgtacgagagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaacaaggaaaacagagattgtctctgcctggtagcggtcttgcacctcaaacagcgagacaaccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaagagaagtccaaattaaacgaaactgatactaagtctacagcaactgtttcacaacaagctgctgattagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="23940" stop="27690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24239" g_stop="24283" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24284" i_stop="24866" i_length="583">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24867" g_stop="24980" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26166" g_stop="26688" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="697" r_length="538" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26689" i_stop="27244" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27245" g_stop="27390" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="843" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E727575" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24239" e_stop="24283"/>
          <exon e_start="24867" e_stop="24980"/>
          <exon e_start="26166" e_stop="26688"/>
          <exon e_start="27245" e_stop="27390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAAGTAAGCAACTTCTAAATTGTTATTACTTAAAATACCCTTGTGATTATTTCCATAGTGGCCATTACTTGTGTCAATGGCATTTATTACTAGGTTATTATATTACTAAGTTTTAATCTTACCTTTTTCGAATGAGAGGTCTCTTGATAGTGGCATCAGCTGTAAATTTGCATTTGGTTTCTGAATTATTTGCCACAGGTTTTGCTTATGGTGGATATCGTTCAACAATATATGATATGCACTGCATCATGTGAAACTTTCCTGATAGGTTCTTCATGGATGTCCCAGAAGGACTGATCGGCATCTCATCATTTGAATGTTGTGGCCAAGAAATTAGGTTATATTGTGGTTCTTGGTTGTTCTTGTCATCAGTCTCATAATATGCTTGATTTTTCCACTTTAAAGGGTGATTCAAGTTGTAGTCTTAGTAATTTTCTATTTCTCTTTTGACATGAACTTTCGTGCCAAAATGTGAAAAAAAGTTTCAAGCGTAGAAGTATGCATTGCCTGGTGGAACTTATGTGGGTACACCCACACTGTTAACATTAACATGTGTCTCACCTTTTGTTGCTGAATATTCTAACAGGAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCT-GG--G--A--AG-------A-AACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCGGTAAGTCATCTCTCTCTCTCTTTCTTGTTTAATGATATTGCCTTGTGTAAGACGCTGGAAATGTTACACAATATAGACCCTCTTTGTTTTGCCCACTTCTTCTTGTTTGGCATAAAGATCGAAATATTGTTAATTGAAATTACCGTCTCCTCTATAAATAACCCTATCAATAAGCAAAAGTAGCACTGTAACTTGTTTAATGTTTCTCTGCGAAGCCCTCACAGAGGTAATGAATTTCGGAATGCTATGCTGAAGGAAAATTATTTATAAAAATTTTGTACTTATTTTTCACTTTTATTTTATTCAAGTACGATGATGATGTGAAATTTAGATAAATGAAGAACTGTCGACCCCAACGTGTTTGGACTGAGGCATAGTTGTTGTTGTCGCTATGCCGAAGGAATGGGCATGAACAGATCTTTATAATATTCGTACGTCTTTTCAGACAAATATGGTAGTGAGAGTGACAACACATATTCTGTAACCACACTAGTGTGTTGAAATATTCCTGCAACTAGTGCCGTATGCACTAATTTTTACGACATCTTTTTTCCAGGTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTT</genome_strand>
        <mrna_strand>CTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAAGAGAAGTCCAAATTAAACGAAACTGATACTAAGTCTACAGCAACTGTTTCACAACAAGCTGCTGATTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375375" ref_strand="+" ref_description="SGN-E375375 [TUS-15-D14]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="24562" stop="26956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24867" g_stop="24980" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26166" g_stop="26656" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="614" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E375375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24867" e_stop="24980"/>
          <exon e_start="26166" e_stop="26656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204215" ref_strand="+" ref_description="SGN-E204215 [cLEC-13-B17]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctcaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcacgctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccatgtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcagaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccacaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="24562" stop="26860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24867" g_stop="24980" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26166" g_stop="26560" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="518" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E204215" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24867" e_stop="24980"/>
          <exon e_start="26166" e_stop="26560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTCAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCACGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCATGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAGAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCACAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366582" ref_strand="+" ref_description="SGN-E366582 [cLPT-13-M8]">
      <seq>ctacttgggtcttttctcttcatttttttgtatatgctatgtgtgtactcaaggacacatggtgcctctagtcagaattcaggaacaactatggaagaataaaaatagctgtcaatactgtggtatcattttatgatactggttaggcaggacatggtgaacctttagcttacttaggatatgaccttatattggagggtgtggaggtaaaaaattcgggtagaaggctagtagtaaatagtttctcatcttgtcctctcctgatagtagtattagtatgatttttcagtatttaatattgctttaatatttccatatttctcattcttagttttctataactagtctcgtatgcctctattttcttactagcttgcagttgttactgcttgtcttcataaatgttgtgttttagggtctattggaagcagcctctctacctgccaaggtaggggtaaggtctgtgacactaccctcctcagatctcacacttgggtaagttggcgttggtgttgtttgttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="25248" stop="26391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25548" g_stop="26091" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E366582" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25548" e_stop="26091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTT-TATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</genome_strand>
        <mrna_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTTGTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAATTCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAACCTTTAGCTTACTTAGGATATGACCTTATATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGCTAGTAGTAAATAGTTTCTCATCTTGTCCTCTCCTGATAGTAGTATTAGTATGATTTTTCAGTATTTAATATTGCTTTAATATTTCCATATTTCTCATTCTTAGTTTTCTATAACTA---GTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATG-T-TG----TG--TT--TT------AGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCTCACACTTGGGTAAGTTGGCGTTGGTGTTGTTTGTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375374" ref_strand="+" ref_description="SGN-E375374 [TUS-15-D14](-)">
      <seq>aaggaaaaacaaagattgtctttgcctggtagcggtcttgcacctcaaacagcgagacagccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaggagaagtccaaattaaacgaaactgataccaagtctacagcaactgtttcacaacaggctgctgattagtttttaggtactcgttgaagatcccgatctcagaaccaagtgtcacccttgcttgtaaatacagggaaccttcttaaaggggagtgatggtatgttgtccacggcagagttaaaaggagataggcttgctgccatctcctgaataacatcttcgcatttgtttcaattcttgtcataattcgtgtaatttatataatagcgcgttgttttctttacccctcctccctcccagtgtaaaaaagaggatgaatttgctttttgtgccacttttcttgagctgaaaactggggaatttggtgagtttgattgccaatttctttgttgtgtgttgtacaagatctgaatgtaggattcattcattaatctagagattgtagaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="26934" stop="28070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27245" g_stop="27776" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="566" r_length="532" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E375374" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27245" e_stop="27776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</genome_strand>
        <mrna_strand>GTCTTGCACCTCAAACAGCGAGACAGCCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212243" ref_strand="+" ref_description="SGN-E212243 [cLEC-75-D23]">
      <seq>ttctgttgcttcacttctttcacttcaatctttctccattaatggtgattttgctgtaacaagaaaatatgttcagattatctgtagttatcccttttcttactcttctcatttctgttcttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtcttggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagatttgaagttttccccaatttgggagaagttcttcaatggtactaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttaaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatttcgctcttatctcacaacattgtatacctttacactcttttaattacttttacaattttttacttgatacccagaaattgtcgaggaaaatggagttccctagttatattgagattnctgatgaatctgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="30190" stop="31492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30490" g_stop="31192" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E212243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30490" e_stop="31192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</genome_strand>
        <mrna_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTNCTGATGAATCTGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298204" ref_strand="+" ref_description="SGN-E298204 [cLEW-9-M23]">
      <seq>atcccttgacttactcttctcatttctgcacttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtctaggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagattggaagttttccccaatttgggagaagttcttcaatggtgctaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttcaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatatcggtcttatctcacaacattgtatacctttacactcttttaattactttcacaattttttacttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="30279" stop="31423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30579" g_stop="31123" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E298204" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30579" e_stop="31123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATAC</genome_strand>
        <mrna_strand>ATCCCTTGACTTACTCTTCTCATTTCTGCACTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTAGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTGGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTGCTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTCAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATATCGGTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTCACAATTTTTTACTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700151" ref_strand="+" ref_description="SGN-E700151 [FA12BB08]">
      <seq>attgagattcttgatgaatctgattccttattagataggtatgatgcgaaagggaataatataatggaacctgaggtgaaatttgaggaatttaaagttggttcacagttttttgtgttaacaagaaagcattctttaatggtgattaaagataggaagttatggaggaaatttagaaaaccatgtttaaatgttgagtcttgttatccagaagagcattattttcctactttgttatcaatggaggatcctaatggttgtaccaagtatacattgacaaatgtgaattggactgatacagttgatggtcatccacatacttatcatccttctgaggtttcttcaaagctgatttatgatcttagagagtcaaattctacatattcatacatgtttgcaaggaaattttcacctgattgcttgaaccctttgatggaaatggcagagtcagtcatcttcaaggactagttcttgcttgaggcaatggtgagatgatgaaggagtgaagacaaatcaaaggcaaaaactttgatgatgttgtgaggacaaaaaaagattggtttgttgtgtacgagtaacacatgtggaaataaggtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="30861" stop="33259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31161" g_stop="31646" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31647" i_stop="32840" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32841" g_stop="32959" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="605" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E700151" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31161" e_stop="31646"/>
          <exon e_start="32841" e_stop="32959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATGGTAAGTGATGATTGCATACTTTCTTTTTTTCTCATTGAATTGACTTAGGTTTTACTGAGTTTTCCTTGTAGAATTAGGGAGTTTAGTTAGTACTTGTGTAGGTGTGAGGTAGCGAGTACCTTGTGAGATTAATTGCGACTAAGCTGATCCAAACACCATGATTCGATCGTTTGTTTGTGAGATTAATTGCGACTAAGTTGATCCAAACACCATGATTCAATCGTTTGTTTACTGTCCTTTTAAAGTATGTGTCTTTCCTTTTTTTTTGATATTTTTTAGTTCTAACAATTCACATTCACATGACATGTTTAAGAATACGTAGCATTTTAGTACTTCCTATGTATCTTTAGTACATGACCACAAAGTCTTTCTTACTTTCTTTTACTTTTGTAAACTTCATGCGAAGTTTAAATGAAAATCGGACAAACAAGTTGAAACGGAGGGAGTAAAGGAAATTAGGTTTTTTTTTGAAATGGATGGTTGTGATATAATATTCTAGAAGTGATGTTGGAATTGATAGGTTAACAATGCTTTTAATAGAACTTGACTATTTTGTTGGTGAATAGGTCTCTTCAATATGGCATATTTTTCTTATGAGGCATTATTTCAATCTTAACTAGGTGGGATTTTCATTTGATAAAGTCTTAAACTTTAGCATATTCATGTGAAAATTGGAATTTTTTTCTTAAAAGATACTTGTTGTGGTAGTAGTTTTGCCACTTACAAGTAGTAGTTGTGAAGGTTTTACAGATTCTTTGTATGATATTTTTTGGATGGTATGTAGCTATCCCTTATGACACATCTAACAAGAAATTTACAACTTTCACATGTGACACATTTTCTTTTTTCATTTGCACACTTTTGATTAGTCAAACTCTTGAATATACTATAGTATGAAATCTTGAAAATGTTGCACCTTGTCTTTGTATGTCACACCTCATCTCTTATGCCACTTTGTCTTGAACTAAAGGCAAATGAAAGGACAAGATAAAGAACAATAATTGATCAATTGTGTACTCTATTATATTTTAATCTTGATTTGAAGTTTGGACAAGTGTCTTAATCATCATTTAGAAAATTAGGAGGTTGGTTTGGTATATTTGAAGTCTAATACACCCCTATATGTCAAATGAAGCAATGAGATAGTGATTTAAAACTGACCATTGTTTTGTTTTATCTTATATTTTATAATAGGTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTT</genome_strand>
        <mrna_strand>ATTGAGATTCTTGATGAATCTGATTCCTTATTAGATAGGTATGATGCGAAAGGGAATAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATTAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTACGAGTAACACATGTGGAAATAAGGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395940" ref_strand="+" ref_description="SGN-E395940 [TUS-18-L1]">
      <seq>ttttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcatcatgaataccgtccagagtgtgtctgatcctctaaaagctatgcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="32652" stop="33539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32952" g_stop="33238" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E395940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32952" e_stop="33238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAA</genome_strand>
        <mrna_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCATCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231470" ref_strand="+" ref_description="SGN-E231470 [cLED-4-E20]">
      <seq>tttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattgtttnttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="32653" stop="33763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32953" g_stop="33468" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E231470" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32953" e_stop="33468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</genome_strand>
        <mrna_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTNTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289906" ref_strand="+" ref_description="SGN-E289906 [cLET-9-I24]">
      <seq>tcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattggtttttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="32840" stop="33763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33140" g_stop="33462" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E289906" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33140" e_stop="33462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</genome_strand>
        <mrna_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGGTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260983" ref_strand="+" ref_description="SGN-E260983 [cLEG-55-P12]">
      <seq>tggaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactggtttcattttttggctaaattgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37050" stop="40039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37350" g_stop="37544" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39739" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="800" r_length="605" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E260983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37350" e_stop="37544"/>
          <exon e_start="39135" e_stop="39739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTG</genome_strand>
        <mrna_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGGTTTCATTTTTTGGCTAAATTGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261534" ref_strand="+" ref_description="SGN-E261534 [cLEG-57-I8]">
      <seq>gaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37052" stop="39886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37352" g_stop="37544" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39586" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="645" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E261534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37352" e_stop="37544"/>
          <exon e_start="39135" e_stop="39586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</genome_strand>
        <mrna_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322323" ref_strand="+" ref_description="SGN-E322323 [cTOB-24-G10]">
      <seq>cggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37070" stop="39959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37370" g_stop="37544" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39659" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="700" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E322323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37370" e_stop="37544"/>
          <exon e_start="39135" e_stop="39659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</genome_strand>
        <mrna_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357275" ref_strand="+" ref_description="SGN-E357275 [cTOS-23-E11]">
      <seq>ggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37071" stop="40468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37371" g_stop="37544" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39793" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39794" g_stop="40175" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="556" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E357275" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37371" e_stop="37544"/>
          <exon e_start="39794" e_stop="40175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGG</genome_strand>
        <mrna_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339659" ref_strand="+" ref_description="SGN-E339659 [cTOE-16-E9]">
      <seq>ttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37088" stop="39889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37388" g_stop="37544" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39589" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="612" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E339659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37388" e_stop="37544"/>
          <exon e_start="39135" e_stop="39589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</genome_strand>
        <mrna_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720632" ref_strand="+" ref_description="SGN-E720632 [FC11BE03]">
      <seq>acctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacacagtgaaacataatgctaatgtttatgtatttttcaaaatctatgggtccttgctttgtctctcatttgtgtcgttttaatctttacgttagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37093" stop="40527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37393" g_stop="37544" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39793" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39794" g_stop="40227" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="586" r_length="434" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E720632" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37393" e_stop="37544"/>
          <exon e_start="39794" e_stop="40227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAA</genome_strand>
        <mrna_strand>ACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACACAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATCTATGGGTCCTTGCTTTGTCTCTCATTTGTGTCGTTTTAATCTTTACGTTAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357911" ref_strand="+" ref_description="SGN-E357911 [cTOS-24-P1]">
      <seq>aatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagagggaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggtcttgctttgtatctcatttgtgtcgttttaatcttttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37100" stop="40518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37400" g_stop="37544" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39793" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39794" g_stop="40219" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="571" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E357911" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37400" e_stop="37544"/>
          <exon e_start="39794" e_stop="40219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATC-TTTATGTT</genome_strand>
        <mrna_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGGAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG-TCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357429" ref_strand="+" ref_description="SGN-E357429 [cTOS-23-P16]">
      <seq>atttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggttcttgctttgtatctcatttgtgtcgntttaatctttatgttagttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37101" stop="40527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37401" g_stop="37544" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39793" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39794" g_stop="40233" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="584" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E357429" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37401" e_stop="37544"/>
          <exon e_start="39794" e_stop="40233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</genome_strand>
        <mrna_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGNTTTAATCTTTATGTTAGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270331" ref_strand="+" ref_description="SGN-E270331 [cLEM-1-C13]">
      <seq>gaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37110" stop="39623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37410" g_stop="37544" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39323" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="324" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E270331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37410" e_stop="37544"/>
          <exon e_start="39135" e_stop="39323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</genome_strand>
        <mrna_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370631" ref_strand="+" ref_description="SGN-E370631 [TUS-27-E18]">
      <seq>gtatacacaaagagaagagaagaggaacgacaacaaatacatcgaagaaaatatatgggatcgactgattcagaattggattcagtttttcaggataacaagcgtaatcgtaatcgtcttagttccgatcggaggctcagccggtacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtaataccatggctctaccacaaggcattaagcttacaattgaacgcaacaactctttttcaagtttcctcgttcatttgctccccaccttactaagtttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagagaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37119" stop="39980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37419" g_stop="37544" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39680" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="678" r_length="547" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E370631" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37419" e_stop="37544"/>
          <exon e_start="39135" e_stop="39680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GT-TACACAAAGAGAAGAGAAGAAGAACGAAAACAAATA-A-CGAAGAAAAT-TATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTT-GTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAAC-CAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</genome_strand>
        <mrna_strand>GTATACACAAAGAGAAGAGAAGAGGAACGACAACAAATACATCGAAGAAAATATATGGGATCGACTGATTCAGAATTGGATTCAGTTTTTCAGGATAACAAGCGTAATCGTAATCGTCTTAGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTCAGCCGGTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAATACCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACGCAACAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTACTAAGTTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAGAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300076" ref_strand="+" ref_description="SGN-E300076 [cLEW-11-C4]">
      <seq>aattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="37165" stop="39885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37465" g_stop="37544" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39135" g_stop="39585" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="531" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E300076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37465" e_stop="37544"/>
          <exon e_start="39135" e_stop="39585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</genome_strand>
        <mrna_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329869" ref_strand="+" ref_description="SGN-E329869 [cTOD-3-F14]">
      <seq>ccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="38844" stop="39945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39144" g_stop="39645" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E329869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39144" e_stop="39645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</genome_strand>
        <mrna_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352294" ref_strand="+" ref_description="SGN-E352294 [cTOS-9-G11]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="39096" stop="40381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39396" g_stop="40081" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E352294" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39396" e_stop="40081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGG-AAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354175" ref_strand="+" ref_description="SGN-E354175 [cTOS-16-E9]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="39096" stop="40273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39396" g_stop="39973" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E354175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39396" e_stop="39973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370630" ref_strand="+" ref_description="SGN-E370630 [TUS-27-E18](-)">
      <seq>aatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttgtgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggataaattgtctttgaacactttcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctctctgccggactcattagtttcaagcggggaaattgtcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcattgatggttggttcagcatattactatggagataatttcaagcgcgttggatgaatgaatgaatgactaccaaacgactccctcattagtctgtcataagttgattttttgctgggaaaaaatgattccatatcctgttaggatgcagtttctttacatggctgtctttgccaccccaatcacataagaaagaaaatgtagaggaaaaagtaataacagagtgataacataatgataatgtttatgtatttttcaaaatttatggggtcttgttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="39187" stop="40489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39487" g_stop="40181" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E370630" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39487" e_stop="40181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAAT-TAGAGGAAAAAGTAATAACAGAGTGA-AACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTT</genome_strand>
        <mrna_strand>AATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTGTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGATAAATTGTCTTTGAACACTTTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCTCTGCCGGACTCATTAGTTTCAAGCGGGGAAATTGTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCATTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGTTGGATGAATGAATGAATGACTACCAAACGACTCCCTCATTAGTCTGTCATAAGTTGATTTTTTGCTGGGAAAAAATGATTCCATATCCTGTTAGGATGCAGTTTCTTTACATGGCTGTCTTTGCCACCCCAATCACATAAGAAAGAAAATGTAGAGGAAAAAGTAATAACAGAGTGATAACATAATGATAATGTTTATGTATTTTTCAAAATTTATGGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746581" ref_strand="+" ref_description="SGN-E746581 [GI|47104169]">
      <seq>gtgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaaaagccgaaagattctgaggatcaatagttagttcaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtctggaaaataagggtcgagttgccagatgcctacccttataagtctccttccattgggtttctcaacaaaatattccaccctaatgtggatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgttttcgaggtttttctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcagtatgagcaaaaagtgaaagagtattgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttattgtcaatgtaacttaccaatatatgtgttaaaattcaggttcttgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="40731" stop="45309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41031" g_stop="41156" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263">
            <donor d_prob="0.985" d_score="0.83"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42420" g_stop="42490" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="199" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="279" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="394" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="447" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="576" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.642" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44643" g_stop="45009" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="941" r_length="365" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="955"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E746581" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41031" e_stop="41156"/>
          <exon e_start="42420" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="45009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAG--AAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</genome_strand>
        <mrna_strand>GTGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTCAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTCTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTATAAGTCTCCTTCCATTGGGTTTCTCAACAAAATATTCCACCCTAATGTGGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTCGAGGTTTTTCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAGTATGAGCAAAAAGTGAAAG................................................................................AGTATTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCT-AAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATTGTCAATGTAACTTACCAATATATGTGTT-AAAATTCAGGTTCTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366277" ref_strand="+" ref_description="SGN-E366277 [cLPT-1-F12]">
      <seq>tgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaaaagccgaaagattctgaggatcaatagttagttcaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtctggaaaataagggtcgagttgccagatgcctacccttataagtctccttccattgggtttctcaacaaaatattccaccctaatgtggatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgttttcgaggtttttctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcagtatgagcaaaaagtgaaagagtattgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="40732" stop="44867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41032" g_stop="41156" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263">
            <donor d_prob="0.985" d_score="0.83"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42420" g_stop="42490" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="198" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="278" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="393" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="446" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="575" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.642" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44643" g_stop="44654" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="587" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E366277" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41032" e_stop="41156"/>
          <exon e_start="42420" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="44654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAG--AAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAAC</genome_strand>
        <mrna_strand>TGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTCAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTCTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTATAAGTCTCCTTCCATTGGGTTTCTCAACAAAATATTCCACCCTAATGTGGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTCGAGGTTTTTCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAGTATGAGCAAAAAGTGAAAG................................................................................AGTATTGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346129" ref_strand="+" ref_description="SGN-E346129 [cTOF-34-M1]">
      <seq>gaaggacaatttctcaattttttcagaagaaaaaaaaaaagccgaaagattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaaagagagttcagtgggacaagcgaaagcgatgatgaagttgttggacatgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="40809" stop="45073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41109" g_stop="41156" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42420" g_stop="42490" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="119" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="199" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="314" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="367" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="496" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44643" g_stop="44773" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="627" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E346129" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41109" e_stop="41156"/>
          <exon e_start="42420" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="44773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</genome_strand>
        <mrna_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAAGAGAGTTCAGTGGGACAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604101" ref_strand="-" ref_description="SGN-E604101 [67292]">
      <seq>atcagatacgatgaagaaacaagtaaactgtttagaatctacggaaatatatccatgacagcaagaaaatcttatctcggacgttcttacaatttcataacatccatatctcttcttttgcttggagaagacattgtcaactaactattgatcctcagaatctgcggaatgaatgcaaggattcaacatatagtaagttcagtaaagaagatgtaaaaacagaaaccaaacaatgagatcagcaattacacagctgtttttgaaagagcataagaagaaaatggttacaacaacgacgattaatacagtaactgcagcaaataagggaagtagacaatgctcaactacctactaaccttctaccctaatcctcgacctccatatcttcctatctatgatcatgtcatcgatcaactgaaggtgtggtatgtcatgtctactcacctttccccaagatttctgcagttctacctctacctctccttatacccaaatagtcaaccagaacaactcatcattggggcaaatgtgcatcttctcttcagatgcccaaactatctcaatctcacgtccctcatcttacaccatgtaggccactcccacctagtcctgaatagcttctttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="42837" stop="41600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42580" g_stop="42388" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42387" i_stop="42336" i_length="52">
            <donor d_prob="0.322" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42335" g_stop="41900" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="630" r_length="438" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E604101" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604101" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42580" e_stop="42388"/>
          <exon e_start="42335" e_stop="41900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGATAAGATGAAGAAACAGCTAAATTGTTTAGAATCTACAAAATTATATCCATGACAGCAAGAAAATCTTATCTCAGACGTTCTTACAATTTCATAACATCCATATCTCTTCTTTTGCTTGGAGAAGACATTTTCAACTAACTATTGATCCTCAGAATCTGCGGAATGAAGCCAAGGATTCAACATATGAGTTCGTAAGTTCAGTAAAAAAGATGTAAAAACAGGATTCAACATATAAGTTCGTAAGTTCAGTAAAAAAGATGTAAAAACAGAAACCAAACAACGAGATCAGCAATTACGCGTCTGTTTATGAAAGAGCATAAGAAATAAATGGTTACAACAACGACGGATAATACAGTAACTGCAGCAAATAAGGGAACTAGATAATGCTCGACTACCTACTAACCTTCTACCCCAATCCTCGACCTCCATATCTTCCTATCTATGATCATGTCATCGATAAACTAAAGGTGTGGTATGTCATGTCTACTCACCTTT-CCCAAGATTTCTGCGGTTCTACCTCTACCTCCCCTTATACCAAAATAGTCAACCAG-ACACCTCATCATTGGGGCATATGTGCATCTTCTCTTCAGACGCCCAAACTATCTCAATCTCACCTCCCTCATCTTACACCATGTAGGCCACTCCCACCTAGTCCTGAATAGCTTCTTTCTTAAT</genome_strand>
        <mrna_strand>ATCAGATACGATGAAGAAACAAGTAAACTGTTTAGAATCTACGGAAATATATCCATGACAGCAAGAAAATCTTATCTCGGACGTTCTTACAATTTCATAACATCCATATCTCTTCTTTTGCTTGGAGAAGACATTGTCAACTAACTATTGATCCTCAGAATCTGCGGAATGAATGCAAGGATTCAACATAT-A....................................................GTAAGTTCAGTAAAGAAGATGTAAAAACAGAAACCAAACAATGAGATCAGCAATTACACAGCTGTTTTTGAAAGAGCATAAGAAGAAAATGGTTACAACAACGACGATTAATACAGTAACTGCAGCAAATAAGGGAAGTAGACAATGCTCAACTACCTACTAACCTTCTACCCTAATCCTCGACCTCCATATCTTCCTATCTATGATCATGTCATCGATCAACTGAAGGTGTGGTATGTCATGTCTACTCACCTTTCCCCAAGATTTCTGCAGTTCTACCTCTACCTCTCCTTATACCCAAATAGTCAACCAGAACAACTCATCATTGGGGCAAATGTGCATCTTCTCTTCAGATGCCCAAACTATCTCAATCTCACGTCCCTCATCTTACACCATGTAGGCCACTCCCACCTAGTCCTGAATAGCTTCTTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336257" ref_strand="+" ref_description="SGN-E336257 [cTOE-10-F18]">
      <seq>taattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="42120" stop="45009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42420" g_stop="42490" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="73" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="153" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="268" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="450" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44643" g_stop="44709" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="517" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E336257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42420" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="44709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</genome_strand>
        <mrna_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561803" ref_strand="+" ref_description="SGN-E561803 [19322]">
      <seq>tagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattacaccgtggagacaattaatgatggaatcacggagttcaacgtggaatttcatggcccaaaagaaagcctttatgaaggtggagtctggaaaataagagtcgagttgccagatgcctacccttacaagtctccttccattgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtatttgaggttttcctgccacagcttttgctatatccaaatccttcggatccattaaatggtgatgcagcgtcactgatgatgaaagacaagaatcaatatgaacaaaaagtgaaagagtattgtgaacggtatgcaaagaaggagaatgtcgttggcacaccaaaagatgagagtgatgatgagattagtgaagaggagttcagtggacagagcgacagtgacgacgaagttgttggccatgctgatccttggagtgaatagactaggatcctaaatggagatcatgtttttagttcatttttctccttacatgtaatattcgattcgtcgtcgcatgtaaatctaggtgccaaaggtagtttagggacaatatacataacccgcagatgtgtgatgaatttcagtctgtgtagaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="42134" stop="45248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42434" g_stop="42490" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="137" r_length="80" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="252" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="305" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="434" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.642" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44643" g_stop="44948" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="740" r_length="306" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E561803" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42434" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="44948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTT-GAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTC</genome_strand>
        <mrna_strand>TAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTACACCGTGGAGACAATTAATGATGGAATCACGGAGTTCAACGTGGAATTTCATGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTCTGGAAAATAAGAGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATTGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTATTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCAAATCCTTCGGATCCATTAAATGGTGATGCAGCGTCACTGATGATGAAAGACAAGAATCAATATGAACAAAAAGTGAAAG................................................................................AGTATTGTGAACGGTATGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGAGAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGACAGTGACGACGAAGTTGTTGGCCATGCTGATCCTTGGAGTGAATAGACTAGGATCCT-AAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATTCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGGTAGTTTAGGGACAATATACATAACCCGCAGATGTGTGATGAATTTCAGTCTGTGTAGAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715198" ref_strand="+" ref_description="SGN-E715198 [FB13CE04]">
      <seq>gttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttatggtcaatgtaacttaccaatatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="42136" stop="45283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42436" g_stop="42490" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42668" g_stop="42747" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="135" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43625" g_stop="43739" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="250" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43952" g_stop="44004" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="303" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44434" g_stop="44562" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="432" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44643" g_stop="44983" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="773" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E715198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42436" e_stop="42490"/>
          <exon e_start="42668" e_stop="42747"/>
          <exon e_start="43625" e_stop="43739"/>
          <exon e_start="43952" e_stop="44004"/>
          <exon e_start="44434" e_stop="44562"/>
          <exon e_start="44643" e_stop="44983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTG</genome_strand>
        <mrna_strand>GTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619840" ref_strand="+" ref_description="SGN-E619840 [70534]">
      <seq>tttaaaagataatgaacacatcaggttcgaagacaagtttaaaacaagaacctgaattctaacacatatattagtaagttacattgaccataaggtggagagtttctacacagactgaaattcatcacacatctgcgggttatgtatattgtccctaaactacctttggcacctagatttacatgcgacgacgaatcgaatattacatgtaaggagaaaaatgaactaaaaacatgatctccatttaggatcctagtctattcactcaaggatcagcatggccaacaacttcgtcgtcactgtcgctctgtccactggaactcctcttcactaatctcatcatcactctcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="45344" stop="44390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45046" g_stop="44690" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E619840" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45046" e_stop="44690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAAAGATAAGGAACACATGAGGTCTGAAGACAAGTTTAAAACAAGAACCTGAATTTTTAACACATATATTGGTAAGTTACATTGACCATAAGGTAGAGAGTTTCTACACAGACTGAGATTCATCACACATCTGTAGGTTATGTATATTGTCCCTAAACTATCTTTGGCACCTAGATTTACATGCGACGACGAATCGGATATTACATGTAAGGAGAAAAATGAACTAAAAACATGATCTCCATTTTAGGATCCTAGTTTATTCACTCAAGGATCAGCATGTCCAACAACTTCATCATCGCTTTCGCTTTGTCCACT-GAACTCCTCTTCACTAATCTCATCATCACTATCATCTTT</genome_strand>
        <mrna_strand>TTTAAAAGATAATGAACACATCAGGTTCGAAGACAAGTTTAAAACAAGAACCTGAA-TTCTAACACATATATTAGTAAGTTACATTGACCATAAGGTGGAGAGTTTCTACACAGACTGAAATTCATCACACATCTGCGGGTTATGTATATTGTCCCTAAACTACCTTTGGCACCTAGATTTACATGCGACGACGAATCGAATATTACATGTAAGGAGAAAAATGAACTAAAAACATGATCTCCA-TTTAGGATCCTAGTCTATTCACTCAAGGATCAGCATGGCCAACAACTTCGTCGTCACTGTCGCTCTGTCCACTGGAACTCCTCTTCACTAATCTCATCATCACTCTCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740642" ref_strand="+" ref_description="SGN-E740642 [LC22BC08]">
      <seq>cgatcgagcctgcaagttccaactggagcagcaagacaagtataaaatttgaacatattcgtccggaaacccatgagtatctctatttattgaccgaccctcatgggtttccggtgacttgcagtggtggctataatgacagtatggtagtagttaaacaggagtctcgatacgcaaaagcaaacgatcgtagtttttctcaatttagcctgcaaattgaacagggggttcccattctttccaagtggctgatctttaaccgattcaagtttgttgcatcaaggggactaaaacttgggccggcttttctcttgtcaagccttacgggtggttctatcgtgggggatatagctccctatcaagcttttgcaattggcggtcttggtagcgtccgagggtatggtgaaggagctgttggttgtggtagatcttgtctggttgctaacaatgaactgacgtttcctttgagccaggtgcttgatggtgctgtcttcttggattgtggatctgacttgggctcaggtcgtcatgtgcccggaaaccctgctcttaggcttggcaaaccaggaaatggaattggcttcggatatggccttagattcaagtctcagctgggccatttccaggtggactatgcagtcaatgcatttcaacaacgaactgtctacttcggcttcagtaacctcccttcgtgagtcttaaccacaacacttgcaaccatgacataacttatgaacagcgctgcatccatagagaaaatttatgaggatatctgcaagagatcagatgttagggtccgagcagtggtccgtcccttataggaacagcagtgaagatttctttttgaaaacatattgagcaaattagtgcacagaggtggttccattttccctgtacctcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="54586" stop="48517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54287" g_stop="54235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.869" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54118" g_stop="54048" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="0.732"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82">
            <donor d_prob="0.988" d_score="0.72"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53965" g_stop="53887" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="203" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53770" g_stop="53655" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="319" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52496" g_stop="52349" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="467" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52348" i_stop="51178" i_length="1171">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51177" g_stop="51108" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="537" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51107" i_stop="49183" i_length="1925">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="49182" g_stop="48817" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="904" r_length="367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E740642" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54287" e_stop="54235"/>
          <exon e_start="54118" e_stop="54048"/>
          <exon e_start="53965" e_stop="53887"/>
          <exon e_start="53770" e_stop="53655"/>
          <exon e_start="52496" e_stop="52349"/>
          <exon e_start="51177" e_stop="51108"/>
          <exon e_start="49182" e_stop="48817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAAGTAAGTGCAAATGATAGAACTTAATGGCAACTCTATACACATGTTATTTAAACTTCAAGTGTGATGCTCTAAGCCTTGATTTTTTAAAGGAAGCGTAAATGTTATTTCTCATGCAGCATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAGGTAGCTTAAACTATGACTTGTTTTTAACTTCTTTTAATTGGATTCTGACTCAGCCTATACTCACAAAATACTTGTTTTGCAGTGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAAGTAATTCACTTTCTAAACACAAATGGTGCAAAATTCTCAATTTCTCTTCTATTTTGATATCATAGTGCATACAATGTTCTATATGCTTTCTAAAACATGTTCACACACTTGTCCAGTTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAGGTGAGAGACATTTTTATTTGGACAGTTGAAGATTTGTCAATTTGGCATAGTTGGTTTTTACAACCATGTTCAACCAGTACTGTATTTACTAATCAAACAAAAATGTAAAAATAAATAAAGATAATAAAGCATCCAATTACCACTAGAACAACATATATCAAATAGTGAAAGTTAGCATTCAGTGCTTTCAAGTGTCTGATGATTTATTGGTAAGTTACTCAGGAATTTCTAAATATTAATGTGAGAAACACAAGAGGAAGCATGTAGGAAGTAATGAACTAAAATTACAATAGCACCAGGGAAGCAGTGTAAGGAAGTCAAGGGTGAAAGATGTTTGAAATACGACATGCATCGAGAGAGGTCAAGATCTATGTGCTTTGATATTAATAGAAACAAGTAAACACATGGAAACTGGACTTGGAAATAATAGGAACTCTTGAGATTTTAACTCTACTGTGTTTTCAAGTTTACTTCTCTGTACAAACTCAATATAAAGCAGTAGCTTAAGAATCTGGATTCTGCTTATTTATTTGTTTGTTCTTGATAAATATATCTTCAATTGCTAGTCAGATTTATTAGATTCTACTGTTCTTGAAAAATATCTTTAATTGTTTATTTACATTTACTAGTTTTTCCCGTCTTCTTAAAATGTTAATATTTAGATCTGAGAGAGAAAAACTCTCCATTCTTTCTAGAATAGAACTGTAGAAACTAAGCAAAACATTGATTCTCCAGCAACCAGCCTTCTCCGAAGAGTTTCACTCTGGGCAGCATGGAAGTGGGGAGTATCCACTAATCTAAAAGTTGATAGAGGGGTGATGCTAAATACATTTTCCTCTTGAGTGTTGAGAGAGAAATTATTGAATGGGATACTATATCAATGGTCCCTCAGCACTGGGTTCACATGATTGAAAAGGGAGCAAGGTGTGCTATAGTTATGATTCTAGTCCTATTGCCCACACACTTACGGTCATTGGTGCATGGGTCTTATCAACAAGTTGGGAATATTCTTGAGGACGCATTCATATTGATATTAGTCTTGCAAAAAATCTTAAGCCTTGCTGTTAAACAATGTTTCTTTCCTGTATAGTTTTATTTTCTTGTTTCCTTTCTAATGCATCTTTCCATATGCTAAAGTCCTACTTTTTTCTCTGACAGCCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTGGTATGTTTTGATTCGTAAATTGTTAGATCTTTGCCTTTTATGACAGTTGTTTGGTTCCACATCTTGCAAAAGTGTTTCTTATTATCATTCTAGTCTCTTAAGTTCCTTCATGATGCAAAAATATGAATGAAATCTTGCTAATTTCTAATGGTGTGCAATGATTCAGAACCAAACGAATAAAAAGTAACTGTGTAGCACAGACTTGAGAAACGGATCTTCTTATTTTGGTTTTTGAAAAATCTATTGTGTTTAGTATGAAAGAGAATATAGTATTTGAATCTGATTGTGATAAGGTATTATGTAATTAATCTTGCAGCTGGAAATACCAGTGACATTAACTCTTTAATACAAGCAAACTCATAGGATCTTCTGTGTTTGAAATTAATAATGTCATACTTTGTCAATCACTTGAATTTTGTTGGCTTTTGAGCTATGTTGCTTGGACTCATCAAAAATAATTTGCACCCGTGTTGGATCCTCCAAAAATGCATTTTTGAAGGATCCGACACGCATCTGTAGGCACTTTTGAAGAACCCGAGCAACATAACTTTTGAGTGGGACTTGCAATGGCTTAAATATTTTTTTTACGTTGATTCTTTTAGTACCACATGTCTTCTTAGACTTTTGATTAGAACTTTCTTTCATCTTTCTGGAGCATTATAATACAATATTTTATGTTTTAGTAGCAGATAGGGCGGACAGACTCTTAAGTGGTGTTAAGGGGGATGCATGACTTTTTATTGGCAATGTTGTCCTGTCTTAGTTGAAGAATTTGACCTTGAAGAAATGTCCTGTTGTTGTGTAAGAATAGTATTGTAAGATAAATCATCATGTGAGAGTGCTTTAAAGTCAAAAGAACCTTTCTTCTAATTTGAAGAAAAGAATTTTATCAACAAAAGTTAGTTATCAGAATTGATTGTTAAAAAGAAGAGAGGGAACAATTTGTTGTAAGAAATGATGTAACAGTATATCAAAAGTAAAATGCGAGTTGTGTCCTCTTATCTGCGCCTGCAAGAGAAGGAACGGAGTTCCCTTGTTTTATTGGTCGCTTACTTGCTTCCACATTGTCTGTGGAATTAGTATTTACTAGTTTATATACTGCTATGTCTGATCCCTTTGGACCTATTAAATATTATATTGTGGAGTCTCACACCCAATGCTTCTTCTCCAGAGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCGGTTAGTACCTTAGTAATTTTTACATCATGCAGAAGGTTTGCTTAATGTCACTGACTGCTGTTGAAATTTAAGAAAACATTGATTTCGATTATTCCTTTTGGAAATATTTGAGAATGTCTGTTTGTTATCAGTTGGGGTTGGGAAAGGAGGGGCTGCCATTATACATGACAACTGCAAATGATTGTTTTGAGAAATTATTTTTTATAACTATTTTTTTTCTGTGTATTTTGCATTTCTTCTTTCAATTTGTTTGTTTCATGCTTTTTATCTGCCTTACTGCTGTTGGGCCTGTATAGAGTAGGTTACTTGCTGTAAGGTTTTCAACCTTTTGTTTCCCATGAAACTGTTAATGATTTAGCCTATGACTTAAGCAGTAAGCTTAATATGTGCTGGTTATGGTTAACTGCTACTTTCGAGATCTAACTCCATATTTAGGTTCCACTGTAAAAACGTAGATCCTCATATATTCTCACAAGTATCTAGGATAAGTGCGTGAACATAATCCTCATCAGCATGATGATGAGAATATTGACAAAAAATGTGATGGAGTAACAATAGTTGGTTTTGCCAAATCATTTATAAGGGGGCGTAGAGTTTGCTAATTCAGTTGTGTATAGCTACAGAGATAGCATACTCGAAACGTCTCTTAGCAAGATATTAAAATATTTGGATATCATAGTAAAAGCAAACACTTTCCAAATGGAGATTGGAGAAGTTCAATAATATGGGCTGCATAATCTTGATATCCACCCTGACTGTTCTAGCTAAGCTTTGTAGGTCAAATAAAAACATTCATGTTTGGCATTATATGGGTTGTACGTGAATATTAGATCTCTCTTTAATGCTGCAAGTTTGCAAACTGATCGAGACTTGTTCCTTTACCTTCTCAATGTGATGATGAGGTCTGTTGCCTTGATAGCACAAAATAAAGTTTGCTATATCATATGGCGTGTTGGATAATGCAAATAACTTTACTCTCTCAGAACGACTGTGAACTGTCTATAGCTTGGGTTTGTATGAGATAAATTAGGTAGAATTTTCTATTTCTTTTGACCATAAGGCTATTTGTTTCCTTCTTTATGATATCAACCCTCTACAAAACGACCTTCCGCTTATTGTAGTATGATCATGTAGAAGTGTACAACTACTTTATTGATGAGAAAATTGAGACTGGGATAATAAATATGCCTTGCATATCAACCTTAATCAATTAGTAGATATTCTTTTGAGGAGTTCACTAGAAACAATTGGACAATTTAGTGCATAAGCTAGCAATGGAAGATAAACTGATTCTATTTTAAGGGGGTGTATCGAAAAGGAAGGATCTGTGTTTTCCAGATACCAGATTCCTAGAATTATAACTTCATGCCAACGAGAGGGGAAAGTGTTGAAAGGAAAAGAAACTTGGTTCCTTCAGCCAACAGATTCTATAGTATGATATATAAAGTTTCATCATCTTCCCTGTTTATAGATAGAAATATCGACAAGCAAGATAAAGCTTGTATTCTAAATTAAATATACAAGTGAAAAGTTTTTTTAAAATAGGAAGAAAGAAAGAAAGAAAACGAAAAGCTCTGGCCTCTGGAGTTGGTGTAAAATGGCAAGACTTTTCGCAGTAGAGGTTGATATTTGAGTCCGTTACAACAATGGTTACATTTTCTTGGTTTCTTGATCATATGAACTGACTGAACTTCAGCATTCGCACATTACAAGCTCTCCGACTCTCAGAATTCTGGACTTCTATATTATGCTGATTGACTGCTTTCATAACAAATAATGAGACAAGTTCTTCATCATTTCACACGTGTATCCTTCAGAAATGCATACGTAAACGTATTGGGCTTCGCGATATCACTACCCTAGTTTCAGAAGAAGTGTTTCCTAACATATTTTCTTCTAACATTTGAGCCATTGATGCATTTCAGGAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCACAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAA-TTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</genome_strand>
        <mrna_strand>CGATCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA....................................................................................................................CATATTCGTCCGGAAACCCATGAGTATCTCTATTTATTGACCGACCCTCATGGGTTTCCGGTGACTTGCAG..................................................................................TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA....................................................................................................................TTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCGGCTTTTCTCTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCTCAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAATTTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731920" ref_strand="+" ref_description="SGN-E731920 [LA28CC08]">
      <seq>ggaaaactcattaataggctaatgggtgctcagaaaagcattcatgctggcaaagctaaaatagatgtcaacgtggatttcacccataaactatgtgctgctttgatgctccagcctttcaggaattctggcagtccccttgaattggtaattggcagtctttgcataaaacacccaaatttatttggcaagagcgagaagctagatgttttgtgggataaaggactctatgattccaatatcttgattacttatcggaagccaagaccagaatggcttgctcaacagtcttttgttgttcagcattccatttctcccgagattggggtacatggcttaccagatgacaacttctctcgatcaggaagtggtggagttaacttatctcgcttatctgctggcttagatttgagcgagcctgcaagttccaactggagcagcaagacaagtataaaatttgaacatattcgtcctgtaagtgatgagggtcggtcaataaatagagatactcatgggtttccggtgacttgcagtggtggctataatgacagtatggtagtagttaaacaggagtctcgatacgcaaaagcaaacgatcgtagtttttctcaatttagcctgcaaattgaacagggggctcccattctttccaagtggctgatctttaaccgattcaagtttgttgcatcaaggggactaaaacttgggccggcttttctcttgtcaagccttacgggtggttctatcgtgggggatatagctccctatcaagctttttgcattgccggtcttggtagcgtccgagggtatggtgaaggagctgttggttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="57541" stop="52093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56701" g_stop="56647" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56646" i_stop="55335" i_length="1312">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55334" g_stop="55268" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="122" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55167" g_stop="55132" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="158" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54974" g_stop="54830" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="303" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.571" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54393" g_stop="54235" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="462" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54118" g_stop="54048" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="533" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53965" g_stop="53887" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="612" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53770" g_stop="53655" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="728" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52496" g_stop="52393" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="832" r_length="104" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E731920" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56701" e_stop="56647"/>
          <exon e_start="55334" e_stop="55268"/>
          <exon e_start="55167" e_stop="55132"/>
          <exon e_start="54974" e_stop="54830"/>
          <exon e_start="54393" e_stop="54235"/>
          <exon e_start="54118" e_stop="54048"/>
          <exon e_start="53965" e_stop="53887"/>
          <exon e_start="53770" e_stop="53655"/>
          <exon e_start="52496" e_stop="52393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAGGTTTCTTCTTTTTCTCTTTCATTTTTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTTGGGAGTGTCAAAGAAGGGTATCTACAGTTTTGGTGTTCTTTTTGTGGTGCCTAATGCAAATGTTGTTTTGGTTGGATATAGTGGATGCTGGTAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTTAATGGTGAGGAACTCATTAATGGGCTAATGGGTGCTCAGAAGAGCATTTATGCTGGCAAAAATTTCTTCTTTTTCTCCTTCATTTCTTGAATAAAATCCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTGGGGAGTGTGAATGAAGGGTATCTATAGTTTTGGTTTTCTTTTTGTTGTGCCTAATGCAAATGTGGTTTTGGTTGATTATAGTGGATGCTGATAGTTCTTTTTTGTGCTTTATATTTTAAGGATTGAATTTTTAGTCAATTTTAATGGTGGGAACTCATTTATAGGCTAATAGGTGCTCAGAAAAGCATTCATGTCGGCGCCTTTATTTCTTGAATAAAACCCAGAATTTATCATCTCACAACTCTCTGAAATTTGTGTTTTATGGAGTGTTTTCGGGTGTCAATACAGGGTATATATAGTTTTGGTTTTCTTTTTCTTGTGCTTATGCGAATGTGGTTTTGGTTGGCTACAGTGGGGGCTGATAGTTCTATTTTGTGCTTTATATTGTAAAGATTGAATCTTGAATCAGTTTGAATGGTGGGTAACTCATTAATAGCCAAGGTCTCTTCTTGTTCTCCTCCATTTCTCAAATAAAACCCACAATTTATTATCTCATACTTAAGGTGTGGCCTAGTGGTTCATGAAGTGGTTTGAGAATCATAAGGTCTAGTGTTTAAATTCCAACAGACACAAAAAAACAGTAGGTGATTTCTTCTATCTGTTCTAACCTGTACCTATCGCTGGTGGGACTGGTGGGAGGTGACAAGTATCCCTTGGAACTCGTTATGCGCAAGCTTGCCTGGACACCACGGATATCAGAATAAATAAATAAAATTTCTTGTCTCATAACTCTCTAAAGCTTGTGTTTTATGGGGTGCCAATAAAGGATGCCAGTCGGTTCTGGTTTGCTATATGTTTGCAAAGCTTGAAAATTTCTTTTGAATTGTGCCTATGCAAATGTGTTTTTGGTTGGCCATAGTGGATGCTGACTGATAGTTCTTTTTTGTGTTTTATTTTGTAAAGTTGAGTTCTTATTTGCTGTCTTGAATTTGAATTGGTCTTCTTGCAGCTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAGGTTCTTACATATTAAAGCACTTATGCCAATTGATTTTGTATTTATCAGTTCTTAACTCTTCGTTTCTTTCTACATATTGCTGTACTGTCTCCTCAATCAGGAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAGGTAATACAATTTTCTCATGTCCTACTCATGAAACTTTTAGCTTCTTTTTGTTTCGGTTATAATTTTTTGTTGTGGCTTGTAAGAATGGAGGGTTTCGGTTTAAACTGTTTTTCTTACTCATACTTGGATTGATAATATTTTGCTTTTATCATTGCAGTCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAGGTGTGCTATACTGAAAAATTTATATTATCTTGTTTTACTTATTTATTATTATCTTTTTGTCAAAGAGGAAAAAACTCTCTAGGACTGAATATTTTGCATTTTGAAATAGTCTGGTTCATGAAGGGGTTGTGGAACTCATTTGATTGGAGTTCAAACTAAATATGTAGGTCTGAGTATGTTTAAGATGAGCTATTCCACTTCCCATTGTTCTTAGAATTTTATTACTAAAGTTGAATCAGTTATAAAGAGGACCATATTGCGGTGAAGAGCACTAATCTTGGTAAAATATCTGCCTCGGAGTCGCATTTATTTGAAATGAGAACTAAATCAACTTAATTTTAGTGTTAGCTTGGGAGTAGACTTAACGACAACTTATTGTTATGTATGGAAATTCTGACACATCATGGACTTCAATCCGAATTATCTTGTTGTCCAGCATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAAGTAAGTGCAAATGATAGAACTTAATGGCAACTCTATACACATGTTATTTAAACTTCAAGTGTGATGCTCTAAGCCTTGATTTTTTAAAGGAAGCGTAAATGTTATTTCTCATGCAGCATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAGGTAGCTTAAACTATGACTTGTTTTTAACTTCTTTTAATTGGATTCTGACTCAGCCTATACTCACAAAATACTTGTTTTGCAGTGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAAGTAATTCACTTTCTAAACACAAATGGTGCAAAATTCTCAATTTCTCTTCTATTTTGATATCATAGTGCATACAATGTTCTATATGCTTTCTAAAACATGTTCACACACTTGTCCAGTTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAGGTGAGAGACATTTTTATTTGGACAGTTGAAGATTTGTCAATTTGGCATAGTTGGTTTTTACAACCATGTTCAACCAGTACTGTATTTACTAATCAAACAAAAATGTAAAAATAAATAAAGATAATAAAGCATCCAATTACCACTAGAACAACATATATCAAATAGTGAAAGTTAGCATTCAGTGCTTTCAAGTGTCTGATGATTTATTGGTAAGTTACTCAGGAATTTCTAAATATTAATGTGAGAAACACAAGAGGAAGCATGTAGGAAGTAATGAACTAAAATTACAATAGCACCAGGGAAGCAGTGTAAGGAAGTCAAGGGTGAAAGATGTTTGAAATACGACATGCATCGAGAGAGGTCAAGATCTATGTGCTTTGATATTAATAGAAACAAGTAAACACATGGAAACTGGACTTGGAAATAATAGGAACTCTTGAGATTTTAACTCTACTGTGTTTTCAAGTTTACTTCTCTGTACAAACTCAATATAAAGCAGTAGCTTAAGAATCTGGATTCTGCTTATTTATTTGTTTGTTCTTGATAAATATATCTTCAATTGCTAGTCAGATTTATTAGATTCTACTGTTCTTGAAAAATATCTTTAATTGTTTATTTACATTTACTAGTTTTTCCCGTCTTCTTAAAATGTTAATATTTAGATCTGAGAGAGAAAAACTCTCCATTCTTTCTAGAATAGAACTGTAGAAACTAAGCAAAACATTGATTCTCCAGCAACCAGCCTTCTCCGAAGAGTTTCACTCTGGGCAGCATGGAAGTGGGGAGTATCCACTAATCTAAAAGTTGATAGAGGGGTGATGCTAAATACATTTTCCTCTTGAGTGTTGAGAGAGAAATTATTGAATGGGATACTATATCAATGGTCCCTCAGCACTGGGTTCACATGATTGAAAAGGGAGCAAGGTGTGCTATAGTTATGATTCTAGTCCTATTGCCCACACACTTACGGTCATTGGTGCATGGGTCTTATCAACAAGTTGGGAATATTCTTGAGGACGCATTCATATTGATATTAGTCTTGCAAAAAATCTTAAGCCTTGCTGTTAAACAATGTTTCTTTCCTGTATAGTTTTATTTTCTTGTTTCCTTTCTAATGCATCTTTCCATATGCTAAAGTCCTACTTTTTTCTCTGACAGCCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTG</genome_strand>
        <mrna_strand>GGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATAGATGTCAACGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG....................................................................................................GAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAG.............................................................................................................................................................TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA....................................................................................................................CATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAG..................................................................................TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA....................................................................................................................TTTAGCCTGCAAATTGAACAGGGGGCTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCGGCTTTTCTCTTGTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTTGCATTGCCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439467" ref_strand="+" ref_description="SGN-E439467 [cSTA-12-A22]">
      <seq>caaagactgaagagtagtaagccaatctacaaagcaagagataacttgagaattagcgattcccaaattttccctcttcttatgttttctttatattcgttttacacaaaactcacactgaataagaacaaaaaaacccaacactaattactcaatacaacagaccttgtagaagtttcaatcattttgaatggtggaaaactcattaataggctaatgggtgctcagaaaagcattcatgctggcaaagctaaaatagatgtcaatgtggatttcacccataaactatgtgctgctttgatgctccagcctttcaggaattctggcagcccccttgaattggtaattggcagtctttgcataaaacacccaaatttatttggcaagagcgagaagctagatgttttgtgggataaaggactctatgattccaatatcttgattacttaccggaagccaagaccagaatggcttgctcaacagtcttttgttgttcagcattccgtttctcccgagattggggtccatggcttaccagatgacaacttctctcgctcaggaagtggcggagttaacttatctcgcttatctgctggcttagatttgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="57740" stop="53980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57441" g_stop="57187" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57186" i_stop="55335" i_length="1852">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55334" g_stop="55268" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="317" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55167" g_stop="55132" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="353" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54974" g_stop="54830" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="498" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.571" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54393" g_stop="54280" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="612" r_length="114" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E439467" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57441" e_stop="57187"/>
          <exon e_start="55334" e_stop="55268"/>
          <exon e_start="55167" e_stop="55132"/>
          <exon e_start="54974" e_stop="54830"/>
          <exon e_start="54393" e_stop="54280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACTGAAGAGTACTAAAGCCAATCTACAAAGCAAGAGATAACTTGAGAATTAGCGATTCTCAAATTTTCCCTCTTCTAATGTTTTCTTTATATTCGTTTTACATAAACCTCAGAAGCCTCTATATACTGCGACACACTGAATAAGTACAAAAACAA-ACAACACGACCTTGTAGAAGTTTCAATCATTTTGAATGGTGGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAGGTCTTATCTTTTTTCTCTTTCATTCATATCTTGAATAAAACCCATGATTTATTATCTCACAACTCTCTGAAATTTGTGTTTTATGAAGTGTGTTTTTGGGGTGTCAATTTTTTTTGTTGCGCCTATGCAAATGTGGTTTTGGTTGGGTACAGTGGGTGCTGATGGTTCTTTTTTGTGCTTTATGTTGTAAAGATTGAATTTTTAATCAATTTGAATGGTGAAGAACTCATTAATGGGTGCTCAGAAAAGCATTTATGCTGGCAAAGGACTCTTCTTTTTCTCTTTCAATTTGTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTATGTTTTTTTGGAATGTTGATGAAGGGTATCTATAGTTTTTGTTGTGGCTAATGCAAATGTGGTTTTGGTTGGTTATAGTGGGCGCTGATAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTGAATGGTGAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAGGTTTCTTCTTTTTCTCTTTCATTTTTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTTGGGAGTGTCAAAGAAGGGTATCTACAGTTTTGGTGTTCTTTTTGTGGTGCCTAATGCAAATGTTGTTTTGGTTGGATATAGTGGATGCTGGTAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTTAATGGTGAGGAACTCATTAATGGGCTAATGGGTGCTCAGAAGAGCATTTATGCTGGCAAAAATTTCTTCTTTTTCTCCTTCATTTCTTGAATAAAATCCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTGGGGAGTGTGAATGAAGGGTATCTATAGTTTTGGTTTTCTTTTTGTTGTGCCTAATGCAAATGTGGTTTTGGTTGATTATAGTGGATGCTGATAGTTCTTTTTTGTGCTTTATATTTTAAGGATTGAATTTTTAGTCAATTTTAATGGTGGGAACTCATTTATAGGCTAATAGGTGCTCAGAAAAGCATTCATGTCGGCGCCTTTATTTCTTGAATAAAACCCAGAATTTATCATCTCACAACTCTCTGAAATTTGTGTTTTATGGAGTGTTTTCGGGTGTCAATACAGGGTATATATAGTTTTGGTTTTCTTTTTCTTGTGCTTATGCGAATGTGGTTTTGGTTGGCTACAGTGGGGGCTGATAGTTCTATTTTGTGCTTTATATTGTAAAGATTGAATCTTGAATCAGTTTGAATGGTGGGTAACTCATTAATAGCCAAGGTCTCTTCTTGTTCTCCTCCATTTCTCAAATAAAACCCACAATTTATTATCTCATACTTAAGGTGTGGCCTAGTGGTTCATGAAGTGGTTTGAGAATCATAAGGTCTAGTGTTTAAATTCCAACAGACACAAAAAAACAGTAGGTGATTTCTTCTATCTGTTCTAACCTGTACCTATCGCTGGTGGGACTGGTGGGAGGTGACAAGTATCCCTTGGAACTCGTTATGCGCAAGCTTGCCTGGACACCACGGATATCAGAATAAATAAATAAAATTTCTTGTCTCATAACTCTCTAAAGCTTGTGTTTTATGGGGTGCCAATAAAGGATGCCAGTCGGTTCTGGTTTGCTATATGTTTGCAAAGCTTGAAAATTTCTTTTGAATTGTGCCTATGCAAATGTGTTTTTGGTTGGCCATAGTGGATGCTGACTGATAGTTCTTTTTTGTGTTTTATTTTGTAAAGTTGAGTTCTTATTTGCTGTCTTGAATTTGAATTGGTCTTCTTGCAGCTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAGGTTCTTACATATTAAAGCACTTATGCCAATTGATTTTGTATTTATCAGTTCTTAACTCTTCGTTTCTTTCTACATATTGCTGTACTGTCTCCTCAATCAGGAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAGGTAATACAATTTTCTCATGTCCTACTCATGAAACTTTTAGCTTCTTTTTGTTTCGGTTATAATTTTTTGTTGTGGCTTGTAAGAATGGAGGGTTTCGGTTTAAACTGTTTTTCTTACTCATACTTGGATTGATAATATTTTGCTTTTATCATTGCAGTCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAGGTGTGCTATACTGAAAAATTTATATTATCTTGTTTTACTTATTTATTATTATCTTTTTGTCAAAGAGGAAAAAACTCTCTAGGACTGAATATTTTGCATTTTGAAATAGTCTGGTTCATGAAGGGGTTGTGGAACTCATTTGATTGGAGTTCAAACTAAATATGTAGGTCTGAGTATGTTTAAGATGAGCTATTCCACTTCCCATTGTTCTTAGAATTTTATTACTAAAGTTGAATCAGTTATAAAGAGGACCATATTGCGGTGAAGAGCACTAATCTTGGTAAAATATCTGCCTCGGAGTCGCATTTATTTGAAATGAGAACTAAATCAACTTAATTTTAGTGTTAGCTTGGGAGTAGACTTAACGACAACTTATTGTTATGTATGGAAATTCTGACACATCATGGACTTCAATCCGAATTATCTTGTTGTCCAGCATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAG</genome_strand>
        <mrna_strand>CAAAGACTGAAGAGTAGT-AAGCCAATCTACAAAGCAAGAGATAACTTGAGAATTAGCGATTCCCAAATTTTCCCTCTTCTTATGTTTTCTTTATATTCGTTTTACACAAAACTCA-CA--CTGAATA-AGAACAAAAAAACCCAACACTAATTACTCAATACAACA-GACCTTGTAGAAGTTTCAATCATTTTGAATGGTGGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG....................................................................................................GAATTCTGGCAGCCCCCTTGAATTGGTAATTGGCAG.............................................................................................................................................................TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTACCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCGTTTCTCCCGAGATTGGGGTCCATGGCTTACCAGATGACAACTTCTCTCGCTCAGGAAGTGGCGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437921" ref_strand="+" ref_description="SGN-E437921 [cSTA-5-D3]">
      <seq>caaagactgaagagtagtaagccaatctacagagcaagagataacttgagaattagcgattcccaaattttccctcttcttatgttaactttatattcgctttacacaaaactcacactgaataataacaaaaaaacccaacactaattactcaatacaacagaccttgtggaagtttcaatcattttgaatggtggaaaactcattaataggctaatgggtgctcagaaaagcattcatgctggcaaagctaaaatagatgtcaatgtggatttcacccataaactatgtgctgctttgatgctccagcctttcaggaattctggcagcccccttgaattggtaattggcagtctttgcataaaacacccaaatttatttggcaagagcgagaagctagatgttttgtgggataaaggactctatgattccaatatcttgattacttaccggaagccaagaccagaatggcttgctcaacagtcttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="57740" stop="54536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57441" g_stop="57187" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57186" i_stop="55335" i_length="1852">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55334" g_stop="55268" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="317" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55167" g_stop="55132" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="353" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54974" g_stop="54836" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="492" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E437921" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57441" e_stop="57187"/>
          <exon e_start="55334" e_stop="55268"/>
          <exon e_start="55167" e_stop="55132"/>
          <exon e_start="54974" e_stop="54836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACTGAAGAGTACTAAAGCCAATCTACAAAGCAAGAGATAACTTGAGAATTAGCGATTCTCAAATTTTCCCTCTTCTAATGTTTTCTTTATATTCGTTTTACATAAACCTCAGAAGCCTCTATATACTGCGACACAC-TGAATAAGTACAAAAACAAACAACACGACCTTGTAGAAGTTTCAATCATTTTGAATGGTGGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAGGTCTTATCTTTTTTCTCTTTCATTCATATCTTGAATAAAACCCATGATTTATTATCTCACAACTCTCTGAAATTTGTGTTTTATGAAGTGTGTTTTTGGGGTGTCAATTTTTTTTGTTGCGCCTATGCAAATGTGGTTTTGGTTGGGTACAGTGGGTGCTGATGGTTCTTTTTTGTGCTTTATGTTGTAAAGATTGAATTTTTAATCAATTTGAATGGTGAAGAACTCATTAATGGGTGCTCAGAAAAGCATTTATGCTGGCAAAGGACTCTTCTTTTTCTCTTTCAATTTGTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTATGTTTTTTTGGAATGTTGATGAAGGGTATCTATAGTTTTTGTTGTGGCTAATGCAAATGTGGTTTTGGTTGGTTATAGTGGGCGCTGATAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTGAATGGTGAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAGGTTTCTTCTTTTTCTCTTTCATTTTTCTTGAATAAAACTCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTTGGGAGTGTCAAAGAAGGGTATCTACAGTTTTGGTGTTCTTTTTGTGGTGCCTAATGCAAATGTTGTTTTGGTTGGATATAGTGGATGCTGGTAGTTCTTTTATGTGCTTTATATTGTAAAGATTGAATTTTCAGTCAATTTTAATGGTGAGGAACTCATTAATGGGCTAATGGGTGCTCAGAAGAGCATTTATGCTGGCAAAAATTTCTTCTTTTTCTCCTTCATTTCTTGAATAAAATCCATAATTTATTATCTCATAACTCTCTGGAATTTGTGTTTTTGGGGAGTGTGAATGAAGGGTATCTATAGTTTTGGTTTTCTTTTTGTTGTGCCTAATGCAAATGTGGTTTTGGTTGATTATAGTGGATGCTGATAGTTCTTTTTTGTGCTTTATATTTTAAGGATTGAATTTTTAGTCAATTTTAATGGTGGGAACTCATTTATAGGCTAATAGGTGCTCAGAAAAGCATTCATGTCGGCGCCTTTATTTCTTGAATAAAACCCAGAATTTATCATCTCACAACTCTCTGAAATTTGTGTTTTATGGAGTGTTTTCGGGTGTCAATACAGGGTATATATAGTTTTGGTTTTCTTTTTCTTGTGCTTATGCGAATGTGGTTTTGGTTGGCTACAGTGGGGGCTGATAGTTCTATTTTGTGCTTTATATTGTAAAGATTGAATCTTGAATCAGTTTGAATGGTGGGTAACTCATTAATAGCCAAGGTCTCTTCTTGTTCTCCTCCATTTCTCAAATAAAACCCACAATTTATTATCTCATACTTAAGGTGTGGCCTAGTGGTTCATGAAGTGGTTTGAGAATCATAAGGTCTAGTGTTTAAATTCCAACAGACACAAAAAAACAGTAGGTGATTTCTTCTATCTGTTCTAACCTGTACCTATCGCTGGTGGGACTGGTGGGAGGTGACAAGTATCCCTTGGAACTCGTTATGCGCAAGCTTGCCTGGACACCACGGATATCAGAATAAATAAATAAAATTTCTTGTCTCATAACTCTCTAAAGCTTGTGTTTTATGGGGTGCCAATAAAGGATGCCAGTCGGTTCTGGTTTGCTATATGTTTGCAAAGCTTGAAAATTTCTTTTGAATTGTGCCTATGCAAATGTGTTTTTGGTTGGCCATAGTGGATGCTGACTGATAGTTCTTTTTTGTGTTTTATTTTGTAAAGTTGAGTTCTTATTTGCTGTCTTGAATTTGAATTGGTCTTCTTGCAGCTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAGGTTCTTACATATTAAAGCACTTATGCCAATTGATTTTGTATTTATCAGTTCTTAACTCTTCGTTTCTTTCTACATATTGCTGTACTGTCTCCTCAATCAGGAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAGGTAATACAATTTTCTCATGTCCTACTCATGAAACTTTTAGCTTCTTTTTGTTTCGGTTATAATTTTTTGTTGTGGCTTGTAAGAATGGAGGGTTTCGGTTTAAACTGTTTTTCTTACTCATACTTGGATTGATAATATTTTGCTTTTATCATTGCAGTCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTT</genome_strand>
        <mrna_strand>CAAAGACTGAAGAGTAGT-AAGCCAATCTACAGAGCAAGAGATAACTTGAGAATTAGCGATTCCCAAATTTTCCCTCTTCTTATGTTAACTTTATATTCGCTTTACACAAAACTCACACTGAATAATA-ACAAAAAAACCCAACACTAATTAC--TCA-ATACAACA-GACCTTGTGGAAGTTTCAATCATTTTGAATGGTGGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG....................................................................................................GAATTCTGGCAGCCCCCTTGAATTGGTAATTGGCAG.............................................................................................................................................................TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTACCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376046" ref_strand="+" ref_description="SGN-E376046 [TUS-40-G22](-)">
      <seq>gaaaacttttaattgcaatttttacatttttcttcttcttattcttcctcttatttttgaatcatgttgtttagcaagagttcaagttcatattatcaacaagcttcctgatggactggcaatgactctccattgtcaatctcatgacaatgatttaggacagttgagattgacgggaggtgacgaagctagttggacttttagtgttaatttttggggcaccaatatgttttattgcgacgctcaatgggatgatagttccacaacatatcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctttgaagaagaaacgttatatggttataatcaaaagagtgaatactgggagttgtttcccttcaccagtgcataaaatcttttaatgatgcctattatcttcgtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttacttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="58365" stop="59554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58665" g_stop="59253" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="608"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E376046" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58665" e_stop="59253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</genome_strand>
        <mrna_strand>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCAATATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTTTGAAGAAGAAACGTTATATGGTTATAATCAAAAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTTTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376047" ref_strand="+" ref_description="SGN-E376047 [TUS-40-G22]">
      <seq>aaaacttttaattgcaatttttacatttttcttcttcttattcttcctcttatttttgaatcatgttgtttagcaagagttcaagttcatattatcaacaagcttcctgatggactggcaatgactctccattgtcaatctcatgacaatgatttaggacagttgagattgacgggaggtgacgaagctagttggacttttagtgttaatttttggggcaccaatatgttttattgcgacgctcaatgggatgatagttccacaacatatcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctctgaagaagaaacgttatatggttataatcaagagagtgaatactgggagttgtttcccttcaccagtgcataaaatctcttaatgatgcctattatcttcgtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttacttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="58366" stop="59554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58666" g_stop="59253" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="608"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E376047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58666" e_stop="59253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</genome_strand>
        <mrna_strand>AAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCAATATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619868" ref_strand="+" ref_description="SGN-E619868 [70563]">
      <seq>gcaacaatgatgaaattttaattaaaagtaactatatatcattacatattgccttgtacatgttacatgtgccaatcaccaaacaaccttacatgacacgaagtaatgataattggatcttgttaatcttgaacacgaaaaattgataattttttaaaaacaagcggagacaataggcatcattaggagaattcatgcacttgtgaagggaaacaattcccagtattcactctcttgattataaccatacaatgtttcttcttcagagatcatccaccagcattccgtttgacatcgtcgggcatcccgactagcatcataggtaataaaacgatatgtcatggaactattatcccattgagcgtcgcaataaaacatagtagtaccccaaaaattaacactaaaagtccaattagcttcgtcacctcctgttaatcttaattgtcctaaatcattgtcatgagattgacaatggagagtcattggcattccatctggaagcctatttataatatgaacttgaactcttgctaaacaacgtgatccaaaaataagaggaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59569" stop="58405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59269" g_stop="58705" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E619868" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59269" e_stop="58705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAATGATGAAATTGTAAGTAATAGTAACTATATATAAATATCATATTGCCTTGTACATGTTACATGTGTTGATCACCGAACAACCTTACATTGTACGAAGTAACGATAATTGGATTTGGTTAATCTTAAATACGAAAAATTGATAATTTTTTAAACACACACGAAGATAATAGGCATCATTAAGAGATTTTATGCACTGGTGAAGGGAAACAACTCCCAGTATTCACTCTCTTGATTATAACCATATAACGTTTCTTCTTCAGAGATCATCCACCAGCATTCCGTTTGACATCGTCGGGCATCCCGAGCGGCATCATAAGTAACAAAACGATATGTTGTGGAACTATCATCCCATTGAGCGTCGCAATAAAACATAGTGGTGCCCCAAAAATTAACACTAAAAGTCCAACTAGCTTCGTCACCTCCCGTCAATCTCAACTGTCCTAAATCATTGTCATGAGATTGACAATGGAGAGTCATTGCCAGTCCATCAGGAAGCTTGTTGATAATATGAACTTGAACTCTTGCTAAACAACATGATTCAAAAATAAGAGGAAGAAT</genome_strand>
        <mrna_strand>GCAACAATGATGAAATTTTAATTAAAAGTAACTATATATCATTA-CATATTGCCTTGTACATGTTACATGTGCCAATCACCAAACAACCTTACATGACACGAAGTAATGATAATTGGATCTTGTTAATCTTGAACACGAAAAATTGATAATTTTTTAAAAACAAGCGGAGACAATAGGCATCATTAGGAGAATTCATGCACTTGTGAAGGGAAACAATTCCCAGTATTCACTCTCTTGATTATAACCATACAATGTTTCTTCTTCAGAGATCATCCACCAGCATTCCGTTTGACATCGTCGGGCATCCCGACTAGCATCATAGGTAATAAAACGATATGTCATGGAACTATTATCCCATTGAGCGTCGCAATAAAACATAGTAGTACCCCAAAAATTAACACTAAAAGTCCAATTAGCTTCGTCACCTCCTGTTAATCTTAATTGTCCTAAATCATTGTCATGAGATTGACAATGGAGAGTCATTGGCATTCCATCTGGAAGCCTATTTATAATATGAACTTGAACTCTTGCTAAACAACGTGATCCAAAAATAAGAGGAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223633" ref_strand="+" ref_description="SGN-E223633 [cLEL-14-O13](-)">
      <seq>tcgttttgttacttatgatgccgctcgggatgcccgacgatgtcaaacggaatgctggtggatgatctctgaaggggaaacgttatatggttataatcaagagagtgaatactgggagttgtttcccttcaccagtgcataaaatctcttaatgatgcctattatgggggtgtgtgtttaaaaaattatcaatttttcgtatttaagattaaccaaatccaattatcgttncttcgtacaatgtaaggttgttcggtgatcaacacatgtaacatgtacaaggcaatatgatatttatatatagttactattacttacaatttcatcattgctgcaaaattatcttaatataattataaagtttgattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="58635" stop="59604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58935" g_stop="59304" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="385"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E223633" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58935" e_stop="59304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</genome_strand>
        <mrna_strand>TCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGGGGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATGGGGGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTNCTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480709" ref_strand="+" ref_description="SGN-E480709 [cSTD-14-P20]">
      <seq>aattaaaaaacaccctgctcctccgccgcctacccttcaccgccgacatctaccaccgactccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatctgggttttcacttttttcgttgttgagctaattggatttgatgagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcgagtttataggaatcataataagaaggttctagaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59571" stop="66191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59851" g_stop="60247" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="492" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="579" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="673" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E480709" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59851" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAACAACCCTGCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG</genome_strand>
        <mrna_strand>AATTAAAAAACAC-CCTGCTCCT-C-C-GCCGCCTAC--CCTTCACCGCCGACATCTACCACCGACTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTGGGTTTTCAC-TTTTTTCGTTGTTGAGCTAATTGGATTTGATGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTAGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481739" ref_strand="+" ref_description="SGN-E481739 [cSTD-19-G20]">
      <seq>aagaaagatagcaaccctgctccgccgccgcctacccttcaccgccgacatctaccaccgactccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatctgagttttcacttttttctttgttgagctaattggatttgaagagaaaaggagtattgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcacaagaaagaggaggctttgcatgctaatagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59565" stop="65413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59855" g_stop="60247" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="494" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65113" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="551" r_length="57" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E481739" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59855" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCTGCTGCTCCTCCGCCGCCGCCGCCTAC-CTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGC</genome_strand>
        <mrna_strand>AAGAAAGATAGCAAC-CCTGCTCCGCCGCCGCCTACCCTTCACCGCCGACATCTACCACCGACTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTGAGTTTTCAC-TTTTTTCTTTGTTGAGCTAATTGGATTTGAAGAGAAAAGGAGTATTGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCACAAGAAAGAGGAGGCTTTGCATGCTAATAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481719" ref_strand="+" ref_description="SGN-E481719 [cSTD-19-C8]">
      <seq>aagaaagatagcaaccctgctccgccgccgcctacccttcaccgccgacatctaccaccgactccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatctgagttttcacttttttctttgttgagctaattggatttgaagagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59565" stop="65257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59855" g_stop="60247" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64955" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="468" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E481719" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59855" e_stop="60247"/>
          <exon e_start="64880" e_stop="64955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCCTGCTGCTCCTCCGCCGCCGCCGCCTAC-CTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCAT</genome_strand>
        <mrna_strand>AAGAAAGATAGCAAC-CCTGCTCCGCCGCCGCCTACCCTTCACCGCCGACATCTACCACCGACTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTGAGTTTTCAC-TTTTTTCTTTGTTGAGCTAATTGGATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340263" ref_strand="+" ref_description="SGN-E340263 [cTOF-2-J12]">
      <seq>gctgctcctccgccgccgccgcctaccttcaccgccgtcatctaccaccgactacggtgaccaaaaagtcacaatctttgaatactcatatagtttctgtaactgggttttcactttttttttttgttaagctaattgaatttgaagagaaaaggagtaatgggtaaaggagagaaaagttcgttaggtagggcactggtgaagcaccataatcagatgattcagcaatcgaaagataagggtcgagtttataggaatcataataagaaggttctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgtctctattctgaccttaatcctcctgttaatcttctcgtcaatctggactctggctctagttctggtgatatgcgacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgcgttccacgcaggcccccatggaatactaaaatgtccgtggaagagcttgatattaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttngtgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59565" stop="67622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59865" g_stop="60247" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="485" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="572" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="666" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67287" g_stop="67322" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="702" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E340263" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59865" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTT</genome_strand>
        <mrna_strand>GCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTNGTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579433" ref_strand="+" ref_description="SGN-E579433 [86561]">
      <seq>cgaggaagcaacctgctccgccgccgcctacccttcaccgccgacatctaccaccgactccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatcttggttttcacttttttctttgttgagctaattggatttgaagagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59571" stop="66130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59877" g_stop="60247" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="388" r_length="371" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="490" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="577" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65830" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="623" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E579433" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59877" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCCGCCTACC-TTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAAC</genome_strand>
        <mrna_strand>CCGCCGCCGCCTACCCTTCACCGCCGACATCTACCACCGACTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTTGGTTTTCACT-TTTTTCTTTGTTGAGCTAATTGGATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478216" ref_strand="+" ref_description="SGN-E478216 [cSTD-3-N9]">
      <seq>caccgccgacatctaccaccgactccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatctgagttttcacttttttctttgttgagctaattggatttgaagagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgagacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagttgaccaacacaaaaaaacaatgctttcttgttacaaagcagatcttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59594" stop="68027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59894" g_stop="60247" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="455" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="542" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="636" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="693" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67660" g_stop="67727" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="761" r_length="68" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E478216" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59894" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGC-TTCTTGTTAACAAAGCTGATCTTTTACC</genome_strand>
        <mrna_strand>CACCGCCGACATCTACCACCGACTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTGAGTTTTCAC-TTTTTTCTTTGTTGAGCTAATTGGATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGAGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTTGACCAACACAAAAAAACAATGCTTTCTTGTT-ACAAAGCAGATCTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574439" ref_strand="+" ref_description="SGN-E574439 [33907]">
      <seq>ctccggcggccaaaaagttgcaatctttgtatacccaattagcttctctatcttggtttcacttttttctttgttgagctaattgaatttgaagagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggattcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggcttagcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagctttactagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaatagaacctggatatctggagacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59616" stop="66149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59916" g_stop="60247" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="432" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="519" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65849" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="584" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E574439" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59916" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGC</genome_strand>
        <mrna_strand>CTCCGGCGGCCAAAAAGTTGCAATCTTTGTATACCCAATTAGCTTCTCTATCTTGGTTT-CAC-TTTTTTCTTTGTTGAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGATTCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTAGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTACTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAATAGAACCTGGATATCTGGAGACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567086" ref_strand="+" ref_description="SGN-E567086 [11156]">
      <seq>gaagagaaaaggagtaatgggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgagaaccacttttttatcaggtgtctgatcttgaggctttatgcactagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59708" stop="67644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60008" g_stop="60247" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="342" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="429" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="523" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="580" r_length="57" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E567086" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60008" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATC-GGTGTCCTGATCTTGAG</genome_strand>
        <mrna_strand>GAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGAGAACCACTTTTTTATCAGGTGT-CTGATCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487821" ref_strand="+" ref_description="SGN-E487821 [cSTE-26-N13]">
      <seq>ggtaaaggagagaaaacttcgttaggtagggcactggtgaaacaccataatcagatgattcagcaatcgaaagagaagggtcaagtttataggaatcataataagaagattctggaatctgtaactgaagttactgatttagaagctgtaatagaacagacagatgaagctcaccgcctctattctgaccttaatcctcctgtcaatcttctcgtcaatctggactctggctctagtactggtgaatatgggacctgaagaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgagacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagttgaccaacacaaaaaaacaatgcttcttgttaacaaagcagatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttctgttctggtcagctaaagctgcctctgctgctctcactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="59727" stop="68214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60027" g_stop="60247" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64880" g_stop="64981" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="324" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="411" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="505" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="562" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="642" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67831" g_stop="67914" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="726" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E487821" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60027" e_stop="60247"/>
          <exon e_start="64880" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="67914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCTGTAAGTCCCCTATAATTAATGTTTATTTTTTGGTATTTTTATGAATTTACTGTTTACTTTTTCGAGCTCGTATACATAGATTATACATTGTTGTTGTATATGTGTTACATATATTAGTCATTGGTGGTGTCCGTACAAGTTTGTCCGCAGCTCGACTAATTCTTGTTCAGCAAGGCTAGGTTAGAATAGATAGGAAGAAAGCACCTGTTTTGTCTCAATTGGGATTTGAACCTAAGAAAGAATGGTTATGGCTACTCTTTGTTGCATGCTGAAATATAGAAAATTATTTTTAATTAATAGACTAAATAAAATCAATATAAAAGATGGGTAGCTAATTAATCACAGTCTTTAGATGAATGATTTAAGATTTTAGTTGATCACAGTCTTTATTAGGACAATCTAAAAATCACCACCCCTGAAACCTCAATTTTGGTTTTTTCTTTTTGTATCTGTCTATCTATATAACATACAAGTTCAAAAACAATAGAACTAACTTTGAGATCAAGATGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCATGTTTTAGAGAGAATTACCATACGAATAATTATAATATTTATAACTGCTGCTCCTGTTAGTTGTCCTTCCAATTTAATTCATTGCCTTTTTTTGGTTTTATATTTTGTCCTTTTAGTTTATATTTAGCTTAGAATAGTGTCTTTGACATTGTCAAGAAAGAACCATCACTACTCCACATCATATAAGGCTATTTAGAAATTGGCACATGTAACACAAGGTGATATGAAATTTACATGCATCCATTCTTAATTGAAATTATTTTACTATAAAAAGGAAATTTACATAGACAGTTTCCAACATATTATGTTGGAGTTTAAAAACTTCTTGCATGTGAAATTTAAACACGGTATGATGGAGTTTCAAAATTTTACATCTGAGACTCCACAATATGCTGTTCATCTGTATGTGAAACTCAGTATATTTTTTTTTATAAATGATGCATTATATAAGTAAATGGGTAAGACATTGTGTCTATTGTATACCTAGTTTGTTCGCCCAGTAACTAGGTATTGACATACACTGGCCTCAAAATCAGGAGTTGAAATTTTGGAGAGGAAATATCATATCTAAGCGAGTAGAAATAGCTATAATATTTCCGATAAATATGGAATTTTGCAGTTACTTTTCAAACTAAATGAAAAGATCGGTAATTTTTTGTTGATATTCTTCTCTTCTAATTTATTTTGTTAATAAATCATGTCGTTCTGAATGTGTGTGTTCTCCCCCTTCCTTTTTTTTTTTGGGTTTAGGGGTTGGTTCAGTGCTAGAGAGTTGATGCTTGCTGGTTGCTTGGTTCGATTTTTTGATCGAGTTTCTAGAAAAAAAAACAGAGAAATTTGGGTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAACACACACATCATCTTTCAAGAAAGAAATGGGAAATAATGTTCGTTGTTTCCCAAATTGATTCTGAAGACTTAATTTCATAAAGCTTGTATGTTTAGTTAAAATGGAAAGGAAGCATCGCAAGATGCTTTGAAGGGCTGTACAGAAAGTGAAGTATACTTGCTTATGGATTTGGGGTTTTGGATGTAATCTACAATACATGAAAGATTAAAATAGCATGTTTTGACTGTATGGACTCACTACAGGAGTAGGGTCTTAGTTAGGTGGAATTTTTTTGTTTTGTTTTGTTTTGTACTGAAAGGCTTTTATCTCCGTAATCCCTGGCACTAGCTAGGTGCCAAATTTCTGTTTTTTATAGAATTACTACTTACCGGTTAAAAAAAAAAAGAAGGAAGAAGATACATTTCCGGAGTTAACCATTGACTCTCTTATGTAACTACTCTGCTTGATGCCCTGCTATGATAACACCTTACTTCATCAAAAAAAAATAATAATTAAGGATGATGAAGATAGATATTCATAAACCTACTGTCTCATACCTTCCCCTGTTATTGCTGACAGTAGGTCTCTTAATCTTGTAAATTTTCAATGACTTACTAGAGTGGGATTTCCTGTCGCTCTTGCATAGTCATTGGCTCAATGCATCAGAGATGTATGCTCCTAGTTTTGAAGGCATAGAACTTATGGATTGTTCTAGTTCAGAAGTGTCTTTTCTGAACGCTTCTATATCTAATGAACTGTAATAAACTAGTAGTTAAGAAATCTCGAGGGCTTTGTCTGATGGGCATCACGTAAGTATATAGCACCAGAATCCTAAAAGTAGATTTGATCCAGAAGGAAGTGTCCATTAACATATGTAACTGTGCTCTAACTCTATTTGAGAGATCCAAATATTGTTAACGTTGGGAATGACTTGATTGGTGTGGATGAAGTAGTGAATTTGAAAGGAAGTGGAACGGTAACACTGTTGATATGAACAGAGAAGGAAATTGTTTCAAGTCTTACATATTCAGTGAATGGGAAGTATATCATATCTCCATCAGAAATTATTGTGATTCAGGGTTTCCACATCTTGTTTTATTGCAGCCTTTGCTGTTGGAAAATATATACATAGAAGAGGACAAAGATGAAGTTTTGATAAAATGAACAGCGGACATAGACTTTCCTAAAAATGATATTTGCTCCCTCTCCTCTTTGAGATTGCTATTGGATTGCACGCAAAATAGTTTTGGTGGGTATGACAAGCCCATGAATTTCTGCTCTAAGCAAATAGTGAAGAAATACCATTAGAAAGCAAGTATTTGAACTTGGTCTTTTGGAGAAGAAAAAAATTCTCTGGATAATGTTGTGAAGAAAGATACTTTGTTAAAATATGTTGGAACCTGCAGAAGTTGAATTTAAATAGAACCGGTCGTAACCAAAGAAGGAAAGGGCAGAATCTTTTATTTAAAAGACACAGCCTTTCATTTAAAATACTCATTAGTAATTTAATTTATACAAAATTCTAACCTTTGCTATGTTGTATTTGTTTTGCTTGAACTCCTGTAATCAGTCGACACTACTGAGCAGAACTATTATGGTCTCTGTAATAGAGGTTTGGATTAAATAGGTAAATCATAAAATTGCTGATTATGTTTCATAGTCAGCCCTGTAAAAGTTAGGTCATTTGGATGAACTTCTCTCTTCAGATTGAGTTATCTTGATTTACCATGTGAAATTCACAGTTGCATTATTGTGCCAAATTTACTTCTCTAATTTTTATAGTATATGTTAGTGTAGTGTAGTGTTGACCGAGATCCTATAACAAGTGGCTTCATCTCTAAGAATCTATTTTTTAGACTATTTCCCTTCTCATCTTTGACCTGGCTATTTTTTGCTGATTTTTTCCCTTGACTTTTTGTTATCGTGGCTCTGCGTGTTAGTGTCCTCTCTGACAGAATTGAAAGATTACATACCTTTTAAACTAATGGTTGTTGTTGCCTGACTTTGTCATAAAAGGGACTCTGGCTCTAGTTCTGGTG-ATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGC</genome_strand>
        <mrna_strand>GGTAAAGGAGAGAAAACTTCGTTAGGTAGGGCACTGGTGAAACACCATAATCAGATGATTCAGCAATCGAAAGAGAAGGGTCAAGTTTATAGGAATCATAATAAGAAGATTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGCCTCTATTCTGACCTTAATCCTCCTGTCAATCTTCTCGTCAATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCTGGCTCTAGTACTGGTGAATATGGGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGAGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTTGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCAGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTGTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622360" ref_strand="+" ref_description="SGN-E622360 [72726]">
      <seq>ttaaaactttcaagtgcaaatattacattctttttctcctttttattctttatgtacttatttttggatcatgttccttagcaagagggattagtatacatttgccagggcacaaaaaagtccaagtacatgttattaataggctatcagatggaattcccatgactctccattgtcattctcatgacaatgacctaggacaatcaatattggaagaagatgatgaagttaattggagttttagagttaatttctggggtactactttattttattgtgacgttcgatgggagagtgatggttccatttggcaccattttaatgcctatgataccgatagggactatcgacggtgtcagtcggaatgttggtggatgatctcacaagaacaattgttgtatggttataatcaagagaatgaatactgggaattgtttcccttcaccaatgcatgactactcttaatggcgcctatttcccttgcgtgttgttcaatgattataggcttttcatgttcgaaacaagaaccaattgtcatgttcaacttagcttacatgttttgtatatatgctttagtcatgtgtgatctcataggtcaatcagaacttgaagacaaccattatcgtccaagttctggctttcaatgagattaatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="60455" stop="61714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60755" g_stop="61414" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E622360" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60755" e_stop="61414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTA-CCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTT</genome_strand>
        <mrna_strand>TTAAAACTTTCAAGTGCAAATATTACATTCTTTTTCTCCTTTTTATTCTTTATGTACTTATTTTTGGATCATGTTCCTTAGCAAGAGGGATTAGTATACATTTGCCAGGGCACAAAAAAGTCCAAGTACATGTTATTAATAGGCTATCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGACAATCAATATTGGAAGAAGATGATGAAGTTAATTGGAGTTTTAGAGTTAATTTCTGGGGTACTACTTTATTTTATTGTGACGTTCGATGGGAGAGTGATGGTTCCATTTGGCACCATTTTAATGCCTATGATACCGATAGGGACTATCGACGGTGTCAGTCGGAATGTTGGTGGATGATCTCACAAGAACAATTGTTGTATGGTTATAATCAAGAGAATGAATACTGGGAATTGTTTCCCTTCACCAATGCATGACTACTCTTAATGGCGCCTATTTCCCTTGCGTGTTGTTCAATGATTATAGGCTTTTCATGTTCGAAACAAGAACCAATTGTCATGTTCAACTTAGCTTACATGTTTTG--TATATATGCTTTAGTCATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATCGTCCAAGTTCTGGCTTTCAATGAGATTAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621839" ref_strand="-" ref_description="SGN-E621839 [72199]">
      <seq>cttttcaagtgcaaatattacattctttgttctccgtttgttattcgtttatgtacttatttttggatcatgttccttagcaagagggattagtatacatttgccagggcacaaaaaagtccaagtacatgttattaataggctatcagatggaattcccatgactctccattgtcattctcatgacaatgacctaggacaatcaatattggaagaagatgatgaagttaattggagttttagagttaatttctggggtactactttattttattgtgacgttcgatgggagagtgatggttccatttggcaccattttaatgcctatgataccgatagggactatcgacggtgtcagtcggaatgttggtggatgatctcacaagaacaattgttgtatggttataatcaagagaatgaatactgggaattgtttcccttcaccaatgcatgactactcttaatggcgcctatttcccttgcgtgttgttcaatgattataggcttttcatgttcgaaacaagaaccaattgtcatgttcaacttagcttacatgttttgtatatatgctttagtcatgtgtgatctcataggtcaatcagaacttgaagacaaccattatcgtccaagttctggctttcaatgagattaatttcttaggttttactgtctacttgacttcttttttactaaaaaatgtgatattgcaccttgtagtagtaaaaaaattaaatttagtggacaaagaaaagtaaacaagacccatgcattgtttttaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="60462" stop="61855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60760" g_stop="61530" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="798"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E621839" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E621839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60760" e_stop="61530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCAAGTGCAATTTTTACATTATTT-TTCTCC-TGTTTT-TTC-TTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTA-CCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCAT</genome_strand>
        <mrna_strand>CTTTTCAAGTGCAAATATTACATTCTTTGTTCTCCGTTTGTTATTCGTTTATGTACTTATTTTTGGATCATGTTCCTTAGCAAGAGGGATTAGTATACATTTGCCAGGGCACAAAAAAGTCCAAGTACATGTTATTAATAGGCTATCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGACAATCAATATTGGAAGAAGATGATGAAGTTAATTGGAGTTTTAGAGTTAATTTCTGGGGTACTACTTTATTTTATTGTGACGTTCGATGGGAGAGTGATGGTTCCATTTGGCACCATTTTAATGCCTATGATACCGATAGGGACTATCGACGGTGTCAGTCGGAATGTTGGTGGATGATCTCACAAGAACAATTGTTGTATGGTTATAATCAAGAGAATGAATACTGGGAATTGTTTCCCTTCACCAATGCATGACTACTCTTAATGGCGCCTATTTCCCTTGCGTGTTGTTCAATGATTATAGGCTTTTCATGTTCGAAACAAGAACCAATTGTCATGTTCAACTTAGCTTACATGTTTTG--TATATATGCTTTAGTCATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATCGTCCAAGTTCTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACTGTCTACTTGACTTCTTT--TT--TACTAAAAAATGTGATATTGCACCTTGTAGTAGTAAAAAAATTAAATTTAGTGGACAAAGAAAAGTAAACAAGACCCATGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620613" ref_strand="+" ref_description="SGN-E620613 [71316]">
      <seq>ggtgtcagtcggaatgttggtggatgatctcacaagaacaattgttgtatggttataatcaagagagtgaatactgggaattggttcccttcaccaatgcatgaatactcttaatggcgcctatttcccttgtgtgttgttcaatgattataggtttttcatgttcgaaacaagaaccagttgtcatgttcaacttagcttacatgttttgtatatatgctttagtcatgtgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="60806" stop="61622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61106" g_stop="61342" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E620613" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61106" e_stop="61342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTA-CCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGAT</genome_strand>
        <mrna_strand>GGTGTCAGTCGGAATGTTGGTGGATGATCTCACAAGAACAATTGTTGTATGGTTATAATCAAGAGAGTGAATACTGGGAATTGGTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCCTATTTCCCTTGTGTGTTGTTCAATGATTATAGGTTTTTCATGTTCGAAACAAGAACCAGTTGTCATGTTCAACTTAGCTTACATGTTTTG--TATATATGCTTTAGTCATGTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325855" ref_strand="+" ref_description="SGN-E325855 [cTOC-12-H10]">
      <seq>ctagtctcgagtttttttttttttttttttcaacatttcgtagtgtcatggttatatcgaagccaagatcaattcgtggtaattttctcaggtgcaacatagaagaatcttagagtagaagaacaaaatgaaaaaatgcagaataagtgccctttttttccccattcggaacaattaccttactgttctgttttttcagctgtgagccgttcattttagctgaactatagagtgaaaggggtttgaatcgttgttacaatcatatgcatcattttcaatgaggccaagaggccaagtctagcactgctgacaacttgttttgccatgttaaatagttatgggatggtaaaggaaggatttgctatcgcaaaaatccatactaaaggaaggagtccctttttccatggcacagcctcagttgctttgatggaatgcttacatgaaaggcttaattgagtgttgcgggtagaattgctgtatgaggagtccacttaaaataaaaggaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="19305" stop="63183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62371" g_stop="62883" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E325855" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62371" e_stop="62883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</genome_strand>
        <mrna_strand>CTAGT-CTCGAGTTTTTTTTTTTTTTTTTTTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597228" ref_strand="+" ref_description="SGN-E597228 [40727]">
      <seq>gaaagattgaagcagcagaagaaagaggaggctttgcatgctagtagtcttcgtgttccacgcaggcccccatggaatactagaatgtcagtagaagagcttgatatcaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagaatgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgagacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagttgaccaacacaaaaaaacaatgcttcttgttaacaaagcagaccttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttctgttctggtcagctaaagctgcctctgctgctctcactgcttcagaagtaccaacgagctctcaggaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggaccgtttacagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="64617" stop="68302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64917" g_stop="64981" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.842" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65057" g_stop="65143" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="152" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="246" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="383" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67831" g_stop="68002" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="555" r_length="172" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E597228" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64917" e_stop="64981"/>
          <exon e_start="65057" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="68002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAGGTAATTGTTCCCTTTCTTAATCTAGTGCACTATCTGGTGTTCTGCTCCAAGGTTCTGAAGTACCTTTTTTTCCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCT</genome_strand>
        <mrna_strand>GAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGTGTTCCACGCAG...........................................................................GCCCCCATGGAATACTAGAATGTCAGTAGAAGAGCTTGATATCAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAATGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGAGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTTGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCAGACCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTGTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCACTGCTTCAGAAGTACCAACGAGCTCTCAGGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGACCGTTTACAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297163" ref_strand="+" ref_description="SGN-E297163 [cLET-29-C12]">
      <seq>gcaggcccccatggaatactaaaatgtccgtggaagagcttgatattaatgaaagacaagcttttctagcttggcgacgcaatcttgcaaggcttgaagagtacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagtcgaccaacacaaaaaaacaatgcttcttgttaacaaagctgatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="64754" stop="68178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65053" g_stop="65143" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="185" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="242" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="322" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67831" g_stop="67878" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="370" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E297163" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65053" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="67878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTT</genome_strand>
        <mrna_strand>GCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGTACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331367" ref_strand="+" ref_description="SGN-E331367 [cTOD-9-C16]">
      <seq>aagcttttctagcttggcgacgcaatcttgcgaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgtgacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagtcgaccaacacaaaaaaacaatgcttcttgttaacaaagctgatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttcttttctggtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaatgagctctcaagaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggcccgcttacagtctgcagcagaggagatagttttgactaagaataggttagcttctgatgctgatgagaacttggcagaagatgttcagtctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaacgaataatgctttggtaggggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="64810" stop="68458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65110" g_stop="65143" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="128" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="185" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="265" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67831" g_stop="68158" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="593" r_length="328" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E331367" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65110" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="68158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAA</genome_strand>
        <mrna_strand>AAGCTTTTCTAGCTTGGCGACGCAATCTTGCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGAATAATGCTTTGGTAGGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585231" ref_strand="+" ref_description="SGN-E585231 [66951]">
      <seq>gcttttctagcttggcgacgcaatcttgcaaggcttgaagagaacgagaaactggttctcaccccttttgaaaagaacctggatatctggagacagctttggagagttgttgagcgtagtgatctgcttgtaatggttgttgatgcacgagacccacttttttatcggtgtcctgatcttgaggcttatgcactagaagttgaccaacacaaaaaaacaatgcttcttgttaacaaagcagatcttttacccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttcttttctggtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaacgagctctcaggaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccggaaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacaaagttcgaggatatgaggatgattgcatgtggtgtttgccaatttgaccggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="64812" stop="68620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65112" g_stop="65143" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65785" g_stop="65878" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="126" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67287" g_stop="67343" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="183" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="263" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67831" g_stop="68320" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="756" r_length="493" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E585231" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65112" e_stop="65143"/>
          <exon e_start="65785" e_stop="65878"/>
          <exon e_start="67287" e_stop="67343"/>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="68320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCTAGCTTGGCGACGCAATCTTGCAAGGTCAGTGCTATTAAAAGACATTTTACTACTGTGCTACATATTGAATGCATGTTTGTAAATATTATTGCTTTCCTCTCTTTTTGGCGGAGGGGGCAGGGACTATGAATGTTGCATTCATTTTCCTCTTGAAACTGCTTCAATGTTGGTTACTATGATTTTTTTTCTTTGTAGTGTTGAAGGTAAATGTTAGTTACTATGGGTTATGTAGGTAAGCACAGATTAAGCCAGTAAGTTGCCTGGTTTATATTCCAAGCATTTGTATCTCCCCTCAAAGTTTTATTAGTTAACCATTATTTTCATATGCACTTAAAAAACCTTACAAATTCCATCGCTTCATAGTGAGTTCATGTGTGATGGAGTTATGACCAGAAAATGCTTCAGTAATACATTGAAATCCTTTCAAATAGGCTCCCATCTTAGAAGAAGAAATCCAATTAGTGGATTTTATATGATCCTTATAACTATCCATGACTCTTTTGTAATTCTTTGGAGGTGCCCAGCATAGCCCTGAATGCTAATGAATACTACTTTTACCAATCTCAAAAAAAAGAAAAAGGGTCTCATCTTATGTTGGACTACGGCATTACATGTGAATTTTGTTTATGTACATATTTGTCTCTAACCATTCTAAATTTATATAGGCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTGGTGAGATTTTGGTCATTTCTACCTCCTATGATCTTAATGGATAAAATGTTCAGTTGGCAGTTAAACAGTTAGCACCTTCTACTGGTTACTTCTTATGCTTAGTTCTTGTGTAGTTTATTTGATCTAATTATGTAGACTGGAACACTGAGAGTAACTGTTTCTCCAAATTTAAGGTTGCTTTCTATTGAACATATCAAACTAGAGTTAAATTTTTTGTAAAGAAGCCTGAAAGTGCTTGGTAAGAGAGTATGAAGATTGGTTGGTCTGGTATGTAATAGCATTTCTAGCCTTGTTAAAGATATTTTCCCCATGACAAATTGCCTGTGTCAACATTGTTAAAATTTGGCCTAGTGATTGGGCTGTAAATGTTTGAGCCATGAAAACTGTAAGAACCTTTTGTGCTTTAATCTGAATAGTCAATTATTCTTGGCCTACACGTTGCTTCCATGCTTCTTATATCACAGTTTCCTTATATATTATTTGCCTCTTACTAATTTCTGGATTCCCACAGTTTTAGTTCATTGGTCTTTTTAAATGAAAAGGTGAAATTTCATCAAAAAAGTACCACAGTTTTATAGATCGATTGTATCTTTTAAATTAATTAGGCAATAATGTGTCTGAACTTCGAAAATGTCCACTGTGTTTTCCAAGTTCCAAATATTGGATAATATCAGCAATAATAACTATTGAAAATTCCAGCATCAAGTATGCTTTTTTGCTTTGTTGAACAATTTTGACTTCGCAAAAGAAGTATATGTAAGCAAAGAGCTTAAAAACATGACTGCGGACCCCTTCATTAAGACCTGTCCTTTCAAGCTCTTCGGACAATAGTTTGTCGATAGGATTTATCTTTTTTATCTTTCCTACTAATGATATTCCCCCCATTTATTATCTGGAAAGAGAGAAATCTTACATTTTTGAGAACAGGGAGAGTAATATGCAGCAAGTAAAACTGAATTGTATTCTAACTTTGTGTTTTTGGTGTTATCAGATTTACTCTAATGACACTGTCTCTATCATTGATGTTTTAGACTCATCTTAGGGATAGGACAGTGCCTTTAGAGTTCATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATTTACAGAAATTCAGAAATAGAAATAGTTCCCACATTTATTGCGTAGCATAATTTTATCAGTGATCTAGTGCAATTGATAAAAAAAAAGGTACTGGATTTCTATTTGCTACTTGATTGATATGGATCGGATGGTTTCCGCTTTTTAATTATTCTCTCTGAATTGGATGATTTCACTCTTTCTATGAACGTGTTTTCTTAATCTTTCTTTGGAGTACTCCTGAATTTTTCTCCCTTCAATAACGAAAATTATTACTTCATCAAAATAGTATTGCTGATTATTTTAGTGTTTCTTTGTACTCAGCTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAGGTAAGTATTTCAATGCTTCGCATAGGTTGAAGTACATTTCAGTATTAGCACAATTATGATATATTTTCTATTTATATGTTTTGATATCCTTGTCATAATGTTACATGTAGCTGTGCATTCTTCTAGTGCACTATTGTTGAATTCTGATTTTCTTTTTTTAAAAAAAACTTTCTTGATGATTTTTTTTTAAGAAAGTAGGGAACGGTTTCGCACATATACTGATATACAAGATATTAGTGATGCCTCTCTTGTTTTACCTGTATCTATATCATACAAGTTGTGATAAAGATTATGCATTTATGGCGCCAAATTGCAGGCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTAC-AAGTTCGA-GATATGA-GATGATTGCATGTGGTGTTTTGCCAATTGACCGGATC</genome_strand>
        <mrna_strand>GCTTTTCTAGCTTGGCGACGCAATCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTAATGGTTGTTGATGCACGAGACCCACTTTTTTATCGGTGTCCTGATCTTGAG............................................................................................................................................................................................................................................................................................................................GCTTATGCACTAGAAGTTGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCAGATCTTTTACCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAACGAGCTCTCAGGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGAAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACAAAGTTCGAGGATATGAGGATGATTGCATGTGGTGTTTGCCAATTTGACCGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604814" ref_strand="+" ref_description="SGN-E604814 [74953]">
      <seq>nncgaggcacttttttantcggtgtcctagatcttgnnaggcttatgcactagaagttgaccaacacaaaaaaacaatgcttcttgttaacaaagcagatcttttatccatttctatcagaaagaaatgggctgaatacttccaccagcaagggattctttttctgttctggtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaacgagctctcaggaggcaggtgatactgatacgaaaatattaggcagggaggagctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacgagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaacaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccagctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgcctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67358" stop="68812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67660" g_stop="67739" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="120" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67831" g_stop="68512" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="803" r_length="683" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E604814" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67660" e_stop="67739"/>
          <exon e_start="67831" e_stop="68512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAA-AACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAA</genome_strand>
        <mrna_strand>GCTTATGCACTAGAAGTTGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCAGATCTTTTATCCATTTCTATCAG...........................................................................................AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTGTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAACGAGCTCTCAGGAGGCAGGTGATACTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACGAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAACAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCAGCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265949" ref_strand="+" ref_description="SGN-E265949 [cLEI-6-M7]">
      <seq>tctatcagaaagaaatgggctgtatacttccaccaacaagggattctttatcttttctgggcagctaaagctgactctgctgctctcaacgcttcataagtaccaatgagctctcaggaggcaggtgatgctgatactaaaatattaggcagggaggagctattggcccgattacagtctgcaccagaggagatatttttgactaagaataggttagcttctgatgctgatgagaacttggcataagatgttcaatctacaactgtgatggtggggtttgcggggtatcctaatgttgggaaaagttcaacgattaatgctttgttcggggaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67524" stop="68459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67732" g_stop="67739" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67831" g_stop="68159" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="337" r_length="329" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E265949" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67732" e_stop="67739"/>
          <exon e_start="67831" e_stop="68159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCAGGTCAGTATGCCTGATAATATAGTTGCTGCTTCCTATCAGATTTCTTATTTTTGGATGTGCAATTTTATGGTTATTGCTTTATCTTCTGCAGAAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAAC</genome_strand>
        <mrna_strand>TCTATCAG...........................................................................................AAAGAAATGGGCTGTATACTTCCACCAACAAGGGATTCTTTATCTTTTCTGGGCAGCTAAAGCTGACTCTGCTGCTCTCAACGCTTCATAAGTACCAATGAGCTCTCAGGAGGCAGGTGATGCTGATACTAAAATATTAGGCAGGGAGGAGCTATTGGCCCGATTACAGTCTGCACCAGAGGAGATATTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCATAAGATGTTCAATCTACAACTGTGATGGTGGGGTTTGCGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGTTCGGGGAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559941" ref_strand="+" ref_description="SGN-E559941 [19518]">
      <seq>gtcagctaaagctgcctctgctgctctcagtgcttcagaagtaccaacgagctctcaggaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccggaaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacaagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaaaattatcgaggacgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgctgcagaacttttaagagcatacttgtgcctctcgtggttatgttgcttcaagcggattggctgatgaaacaagaggcaacacgtcagatgttgaaggattaatgttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67582" stop="68853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67882" g_stop="68554" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E559941" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67882" e_stop="68554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATAC-TGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGA-GCAACACGTCAGATGTTGAAGGATT-ATGTTGATGGA</genome_strand>
        <mrna_strand>GTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAACGAGCTCTCAGGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGAAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAATTATCGAGGACGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGAGCATACTTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGGCTGATGAAACAAGAGGCAACACGTCAGATGTTGAAGGATTAATGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585297" ref_strand="+" ref_description="SGN-E585297 [67755]">
      <seq>gctaaagctgcctctgctgctctcagtgcttcagaagtaccaacgagctctcaggaggcaggtgatactgatacgaaaatattaggcagggaggagctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacgagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaaaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgtttgcttcaagtggattgcctgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatgggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67586" stop="68859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67886" g_stop="68559" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E585297" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67886" e_stop="68559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATG-TTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCT</genome_strand>
        <mrna_strand>GCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAACGAGCTCTCAGGAGGCAGGTGATACTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACGAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589762" ref_strand="+" ref_description="SGN-E589762 [43344]">
      <seq>gagctctcaggaggcaggtgatgctgatacgaaaatattaggcagggaggagctattggaccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacgaagcatttccaaacacttgtgatttctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacaagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaaaattatcgaggacgtctacaacatatctctaccaaaaccaaagccatatgagccacagtctcgcccacctactgctgcagaacttttaagagcatactgtgcgtctcgtggttatgttgcttcaagtggattgcctgatgaaacaagagcaacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67630" stop="68826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67930" g_stop="68526" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E589762" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67930" e_stop="68526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACG</genome_strand>
        <mrna_strand>GAGCTCTCAGGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGACCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACGAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAATTATCGAGGACGTCTACAACATATCTCTACCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGAGCATACTGTGCGTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480093" ref_strand="+" ref_description="SGN-E480093 [cSTD-12-J15]">
      <seq>aggtgatactgataccgaaatattaggcagggaggaagcctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgaagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacgagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaaaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgcctgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaattagacgatgaagctagtgaagaggaggatgaaagttgttacagaggatgctgatggacctataatgntctggttctgatgagaatgaggatgatgatgatgatgatgaagggatgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67645" stop="68941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67945" g_stop="68709" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="769" r_length="769" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E480093" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67945" e_stop="68709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATGCTGATACGAAAATATTAGGCAGGGAGG-AG-CTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATG-AGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAA-TTGTTACAGAGGATGCTGATAATCCTATAATG-TCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGA</genome_strand>
        <mrna_strand>AGGTGATACTGATACCGAAATATTAGGCAGGGAGGAAGCCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACGAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCTAGTGAAGAGGAGGATGAAAGTTGTTACAGAGGATGCTGATGGACCTATAATGNTCTGGTTCTGATGAGAATGAGGATGATGATGATGATGATGAAG-GGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428487" ref_strand="+" ref_description="SGN-E428487 [STM-50-M10]">
      <seq>aggtgatactgatacgaaaatattaggcagggaggagctattggcccgtttacagtctgcagcagaggagatagttttgactaggaataggtcagcttctcatgctgatgagaacttggcagcagatgttcaatctagaagtgtgatggtggggtttgtggggtatcctaatgttgggaaaagttcaaccattaatgctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacaaagcatttccaaacacttgtgatctctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacgagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatcgagtccctagaaaaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgcctgatnngaacagagcaacacgtcagatgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaatagacgatgaagctagtgaagaggaggatgaagttgttacagaggatgctgatggacctnatatgtctgggtctgatganaatgaggatgatgatgatgatgattgagatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67645" stop="68941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67945" g_stop="68704" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E428487" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67945" e_stop="68704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAG</genome_strand>
        <mrna_strand>AGGTGATACTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGTTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAGGAATAGGTCAGCTTCTCATGCTGATGAGAACTTGGCAGCAGATGTTCAATCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACCATTAATGCTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACAAAGCATTTCCAAACACTTGTGATCTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACGAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATNNGAACAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAAT-AGACGATGAAGCTAGTGAAGAGGAGGATGAAGTTGTTACAGAGGATGCTGATGGACCTNATATGTCTGGGTCTGATGANAATGAGGATGATGATGATGATGATTGAGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582120" ref_strand="+" ref_description="SGN-E582120 [7753]">
      <seq>ctttggtgggggaaaaacgagctggtgtgacatctactcccgggaagacgaagcatttccaaacacttgtgatttctcctaaacttactctatgtgattgcccgggtttagtgtttccatcattcacaagttcgagatatgagatgattgcatgtggtgttttgccaattgaccggatcactgagcatcgagaggctgtacaggtggtggcaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="67842" stop="68657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68142" g_stop="68357" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E582120" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68142" e_stop="68357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATC</genome_strand>
        <mrna_strand>CTTTGGTGGGGGAAAAACGAGCTGGTGTGACATCTACTCCCGGGAAGACGAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTCACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579853" ref_strand="+" ref_description="SGN-E579853 [86986]">
      <seq>ggcaaatcgagtccctagaaaaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgccgcaaactttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgcctgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaattagacgatgaagcgtagtgacagaggaggactgaagttgttacacgaggatgctgatggacctataactgtctggttctgatgagaatgaggatgatgatgatgatgatgaggatgatgatgaggacattaatgcacatctagatcatgttctgagtgatttaagtacatttgatatggccaatggacttgcttctaaccaggcagctcgtaaaaagaagccctcaactgctccccataaacaagacaagataacacaaagaaagaaagaccggtcatggagagtccagaacggtgaaggtgatgggatgccagtagtagagagtcttcaggaaagcagcaaagcactggacctgtaaacgttcggtaggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68050" stop="69260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68350" g_stop="68960" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E579853" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68350" e_stop="68960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGC-TAGTGA-AGAGGAGGA-TGAAATTGTTACA-GAGGATGCTGATAATCCTATAA-TGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTA-AGAGTCTTCAGGAAAGCAGCAAA-CACTGGACCTGTGAACATCCGGTAGGTAT</genome_strand>
        <mrna_strand>GGCAAATCGAGTCCCTAGAAAAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCCGCA-AAC-TTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCGTAGTGACAGAGGAGGACTGAAGTTGTTACACGAGGATGCTGATGGACCTATAACTGTCTGGTTCTGATGA-GA--ATGAGGATGATGATGATGATGATGAGGAT---GATGATGAGGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACATTTGATATGGCCAATGGACTTGCTTCTAACCAGGCAGCTCGTAAAAAGAAGCCCTCAACTGCTCCCCATAAACAAGACAAGATAACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAGAGAGTCTTCAGGAAAGCAGCAAAGCACTGGACCTGTAAACGTTCGGTAGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483825" ref_strand="+" ref_description="SGN-E483825 [cSTE-11-G5]">
      <seq>aatcgagtccctagaaaaattatcgaggatgtctacaacatatctctgccgaaaccaaagccatatgaaccacagtctcgcccacctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgcctgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaattagacgatgaagctagtgaagaggaggatgaagttgttacagaggatgctgatggacctataatgtctggttctgatgagaatgaggatgatgatgatgatgatgaggatgatgatgaggacattaatgcacatctagatcatgttctgagtgatgtaagtacatttgatatggccaatggacttgcttctaaccaggcagctcgtaaaaagaagccctcaactgctcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68054" stop="69126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68354" g_stop="68826" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E483825" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68354" e_stop="68826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCA</genome_strand>
        <mrna_strand>AATCGAGTCCCTAGAAAAATTATCGAGGATGTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAACCACAGTCTCGCCCACCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCTAGTGAAGAGGAGGATGAAGTTGTTACAGAGGATGCTGATGGACCTATAATGTCTGGTTCTGATGA-GA--ATGAGGATGATGATGATGATGATGAGGAT---GATGATGAGGACATTAATGCACATCTAGATCATGTTCTGAGTGATGTAAGTACATTTGATATGGCCAATGGACTTGCTTCTAACCAGGCAGCTCGTAAAAAGAAGCCCTCAACTGCTCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705497" ref_strand="+" ref_description="SGN-E705497 [FA27BC08]">
      <seq>atcgagtccctagaaaaactatcgaggatgtctacaacatatctctgccaaaaccaaagccatatgagccacagtctcgcccacctactgctgcagaacttttaagggcatactgtgcctctcgtggttatgttgcttcaagcggattgcccgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatggaaagctgccacactttgaaatgcctccaggagaatcagacgatgaagctagtgaagaggaggatgaaattgttacagaggatgctgataatcctataatgtctggttctgatgaggatgatgacgacgatgaggatgaggatgaggatgatgaagacattaatgcacatctagatcatgttctgagtgatttaagtacgtttgatatggccaatggacttgcttctaaccagacagctcgtaaaaagaagcccataactgctccccataaacaacataaaaagacacaaagaaagaaagaccggtcatggagagtccagaacggtgaaggtgatgggatgccagtagtaagagtcttcaggaaagcagcaaacactggacctgtgaacatccggtaggtatcaatgggaagttacactggcttcttggctcccaactctgcttaccttgtcaactgtcgttatttcgcctatatattactgcaagcgttatatattacacgcatatctttacaacgatggtgcggtatatatgcttatttttcaagtagcactctcactaagggagttgaagagtgaatcttagtttgtttaaaaccatctggattaatgttgttctgatcttctgttgccaatgattcttctttgaaacagaagatgtagtagaaaatttgtgtatgaaattgcctttaagggaaagtgttatattttcaggtgagatttttcagcataaatatgaattaattgtttttgatattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68055" stop="69620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68355" g_stop="69320" g_length="966"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="960" r_length="960" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E705497" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>966</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68355" e_stop="69320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAACAAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAATGGGAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</genome_strand>
        <mrna_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGAC------GATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAAACAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAAGGGAAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706375" ref_strand="+" ref_description="SGN-E706375 [FA29DB08]">
      <seq>atcgagtccctagaaaaactatcgaggatgtctacaacatatctctgccaaaaccaaagccatatgagccacagtctcgcccacctactgctgcagaacttttaagggcatactgtgcctctcgtggttatgttgcttcaagcggattgcccgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatggaaagctgccacactttgaaatgcctccaggagaatcagacgatgaagctagtgaagaggaggatgaaattgttacagaggatgctgataatcctataatgtctggttctgatgaggatgatgacgacgatgaggatgaggatgaggatgatgaagacattaatgcacatctagatcatgttctgagtgatttaagtacgtttgatatggccaatggacttgcttctaaccagacagctcgtaaaaagaagcccataactgctccccataaacaacataataagacactaagaaagaaagaccggtcatggagagtccagaacggtgaaggtgatgggatgccagtagtaagagtcttcacgaaagcagcaaacactggacctgtgaacatccggtaggtatcaatgggaagttacactggcttcttggctcccaactctgcttaccttgtacactgtcgttatttcgcctatatattactgcaagcgttatatattacacgcatatctttacaacgatggtgcggtatatatgcttatttttcaagtagcactctcactaagggagttgaagagtgaatcttagtttgtttaaaaccatctggattaatgttgttctgatcttctgttgcccatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68055" stop="69498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68355" g_stop="69198" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="838" r_length="838" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E706375" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68355" e_stop="69198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTC</genome_strand>
        <mrna_strand>ATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGAC------GATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAATAAGACACTAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCACGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTACACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCCATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596151" ref_strand="+" ref_description="SGN-E596151 [39438]">
      <seq>gtctacaacatatctctgccgaaaccaaagccatatgaagcactgtctcgcccacctactgccgcagaacttttaagagcatactgtgcctctcgtggttatgttgcttcaagtggattgccgtgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaattagacgatgaagctagtgaagaggaggatgaagttgttacagaggatgctgatggacctataatgtctggttctgatgagaatgaggatgatgatgatgatgatgaggatgatgatgaggacattaatgcacatctagatcatgttctgagtgatttaagtacatttgatatggccaatggacttgcttctaaccaggcagctcgtaaaaagaagccctcaactgctccccataaacaacacaagaaaacacaaagaaagaaagaccggtcatggagagtccaggaacggtgaaggtgatgggatgccagtagtgagagtcttcangcaaagcagcaaacactggacctgtaaacgttcggtaggtgtccatggacgttgttggcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68084" stop="69272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68384" g_stop="68984" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E596151" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68384" e_stop="68984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCC-CGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCA-GAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGG-AAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCT</genome_strand>
        <mrna_strand>GTCTACAACATATCTCTGCCGAAACCAAAGCCATATGAAGCACTGTCTCGCCCACCTACTGCCGCAGAACTTTTAAGAGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGTGGATTGCCGTGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCTAGTGAAGAGGAGGATGAAGTTGTTACAGAGGATGCTGATGGACCTATAATGTCTGGTTCTGATGA-GA--ATGAGGATGATGATGATGATGATGAGGAT---GATGATGAGGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACATTTGATATGGCCAATGGACTTGCTTCTAACCAGGCAGCTCGTAAAAAGAAGCCCTCAACTGCTCCCCATAAACAACACAAGAAAACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGGAACGGTGAAGGTGATGGGATGCCAGTAGTGAGAGTCTTCANGCAAAGCAGCAAACACTGGACCTGTAAACGTTCGGTAGGTGTCCAT-GGACGTT--GTTGGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483844" ref_strand="+" ref_description="SGN-E483844 [cSTE-11-K5]">
      <seq>agtctcgcccacctaccgccgcagaacttttaagagcactactgtgcctctcgtggttacgttgcttcaagtggattgcctgatgaaacaagagcaacacgtcagactgttgaaggattatgttgatgggaagctgcctcactttgaaatgcctccgggagaattagacgatgaagctagtgaagaaggaggaatgaaagttgttacagaggatgctgatggacctataatgtctggttctgatgaaaatgaggatgatgatgatgatgatgaggatgatgatgaggacattaatgcacatctagatcatgttctgagtgatttaagtacatttgatatggccaatggacttgcttctaaccaggcagctcgtaaaaagaagccctcaactgctccccataaacaacacaagaaaacacaaagaaagaaagaaccggtcatggagagtccagaacggtgaaggtgatgggatgccagtagtaagagtcttcaggaaagcagcaaacactggacctgtaaacgttcggtaggtgtaatgggaagttgttggcttcttggctcccaactctgctgccttgtcagctgtttttcctcacctatatattactgcaagcgttatatattacacgcatatcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68127" stop="69370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68427" g_stop="69070" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E483844" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68427" e_stop="69070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCA-TACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGA-TGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAG-AGGAGG-ATGAAA-TTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAG-ACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTA</genome_strand>
        <mrna_strand>AGTCTCGCCCACCTACCGCCGCAGAACTTTTAAGAGCACTACTGTGCCTCTCGTGGTTACGTTGCTTCAAGTGGATTGCCTGATGAAACAAGAGCAACACGTCAGACTGTTGAAGGATTATGTTGATGGGAAGCTGCCTCACTTTGAAATGCCTCCGGGAGAATTAGACGATGAAGCTAGTGAAGAAGGAGGAATGAAAGTTGTTACAGAGGATGCTGATGGACCTATAATGTCTGGTTCTGATGA--A-AATGAGGATGATGATGATGATGATGAGGAT---GATGATGAGGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACATTTGATATGGCCAATGGACTTGCTTCTAACCAGGCAGCTCGTAAAAAGAAGCCCTCAACTGCTCCCCATAAACAACACAAGAAAACACAAAGAAAGAAAGAACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTAAACGTTCGGTAGGTGT-AATGGGAAGTT--GTTGGCTTCTTGGCTCCCAACTCTGC-TGCCTTGTCAGCTGT-TTTTCCTCACCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338184" ref_strand="+" ref_description="SGN-E338184 [cTOE-13-F4]">
      <seq>ttttaagggcatactgtgcctctcgtggttatgttgcttcaagcggattgcccgatgaaacaagagcaacacgtcagatgttgaaggattatgttgatggaaagctgccacactttgaaatgcctccaggagaatcagacgatgaagctagtgaagaggaggatgaaattgttacagaggatgctgataatcctataatgtctggttctgatgaggatgatgacgacgatgaggatgaggatgaggatgaggatgatgaagacattaatgcacatctagatcatgttctgagtgatttaagtacgtttgatatggccaatggacttgcttctaaccagacagctcgtaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="68154" stop="69106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68454" g_stop="68806" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E338184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68454" e_stop="68806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAG</genome_strand>
        <mrna_strand>TTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689228" ref_strand="+" ref_description="SGN-E689228 [t3_tus_80_K12]">
      <seq>ttttattatagtattgatatggatgtggattcagctatggtatcggagtccgatcacgatccgactgttcagaatgatagttcgacgtcggaacaacagcttaatgatgagtcttcaacttcgttgcagcggcaaagttcacaaactcagcaacagcagcagcgaagtagtagtagtagtagtgttcctgctgttgcgggaccaaggtgtgctccgacgtattcggtggtgcacgaagtgatagagaagaaggaagatggtccagggccaaggtgtgggcatacgttaacggctgtaccagctgttggtgaagaaggttctcctaattatattggtccaaggcttattctttttggtaggtgctactgctcttgagggaaattctgctgcttctggaaccccgtcttctgctggaagtgctggaattcgcttagcaggggctactgctgatgtgcactgttatgatgttttcacgaatgcgtgatggatggctttgaaagatttgctcaggggcgtttgattactctttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagcactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatataggagacacttggatgcaggacttaaatgctaacagaccccctacaccaaccagaggccgtccccaagtttgcgaacgatcgagtgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="71084" stop="81031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71382" g_stop="71808" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71809" i_stop="72424" i_length="616">
            <donor d_prob="0.345" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72425" g_stop="72470" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="474" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72471" i_stop="80281" i_length="7811">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80282" g_stop="80357" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="551" r_length="77" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="0.92"/>
            <acceptor a_prob="0.904" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80447" g_stop="80583" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="688" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80665" g_stop="80728" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="753" r_length="65" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80729" i_stop="80799" i_length="71">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80800" g_stop="80804" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="758" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E689228" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71382" e_stop="71808"/>
          <exon e_start="72425" e_stop="72470"/>
          <exon e_start="80282" e_stop="80357"/>
          <exon e_start="80447" e_stop="80583"/>
          <exon e_start="80665" e_stop="80728"/>
          <exon e_start="80800" e_stop="80804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATTAGAGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGT-GGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCATCTGCTGGAAGTGCTGGAATTCGTAGGTTACCCGACTTAATTGATTAGCTGAACTGGACCTTTTCTTTTGTAATTTCCTTCTACTCTATTATGGGGAGGGGGAGCTTGGTTTAACCGGTAAAGTTGTTGTCATGTGATCAGAGTTCACGGGTTCGAGTTGTGAAAACAACCTCTTGCATAAATGCGAGATAGACTGTGTACAATAGACCCTTGTGGTTCAGCCCTTTCCTGGTGAAGTTGCTGCCAAGCACGAGCTGTAAAAACAACCTCTTGCAGAAATGCAGGGTAAGGTTGCGTACAATGGACTCTTGTAGCTCGGCCCTTTCCTGGACCCCACACATAGATGGAACTTAGTGCGTCGGGGTGGTTTGGGGTAACTTTTGAGCGCCTCCAGTATTTTACCTGTACCTGCATCTTTTTACCTTTGCAGGTATTAGGTAGCTTTGCCTTCAGCGCCTAGTTTGTTGGGAGAAATGACATAGATTTTATGACAGACTTGCTTGGATTTGAACCGTGGTTTCCTATGGTCTTCATTCTAGCTTCATCCCTACTAGACACACCCTCGGGTTGTGGTAGTAAAACTGAATCTGGGTTTCAAATGTAAAATGATTTATTTGAGGTTTTGTATCTAATTGCAGGCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCACGAATAAATGGTCTAGGTAAGTCTGAATTGTATCAGTGACAAGCTACATTTTGGTGCTTAGTTAGAAGGTTTGAATATGTGAATGAACTTCACAGGATCACTCCCATTGGGGAGCCACCCACACCAAGGGCTGCACATGTTGCTACAGCTGTGGGAACTATGGTTGTTATTCAGGTTTGTATTGGCTGATAGCTTTGTTGTTTGCCTCGCGTATGATAATCTCATTCAGCCACTTAAGATGTTCTATTTACCATCCATCTCAGGGTGGAATCGGTCCAGCTGGTTTGTCAGCTGAGGATCTTCACGTTCTGGACCTTACTCAACAACGGCCAAGATGGCACAGGTTAGCACCTTTCGAGTAATGTCTATAGTTATCATAATGAATGTTGCCTGTGCGTGAATCCATGACGAACTTGTGTTAAATGATTTTGATCTTATCAGGGTTGTGGTGCAAGGACCTGGTCCAGGTCCGCGTTATGGACACGTCATGGCTTTGGTAGGGCAAAGATATCTCATGGCAATTGGCGGAAATGATGGTTAGTCTGATATCTGAGTCAGATATATTTATTTCAGCAATGACATGGTTTAGAAAAATATTAATCATTCTATTGTATTCAGGAAAAAGGCCTCTAGCGGATGTTTGGGCTTTGGACACGGCTGCCAAGCCATATGAATGGCGGAAGTTGGAACCGGAGGGTGAAGGTCCACCTCCTTGCATGTAAAGTTCATATTCTCTCACTTGAAGACGTGTACTTTATTTTCTTTGTTACCCAATAAATTATCGTTTCTCTTGATTTGTATTTATTTGCTTATTCAGAATTCTATACTTTAAAGGTAGCAAATCTCAAGAATTACTTGTACATATCTGTAAGTATTACATGCTGTTACTAGTGTCAATGATGCATTGTCTGTTTAGTTAGCTTGCAAATTATGTGTATGTGATCTGATTAGGGAGTGTGTCTGATCTTTTATATGAAAAGTTGTTTATCCTGGAGCTGTATGTGTAGAACAATGTTTGTTCATGCTTGTTGGAGATCAATGCCATCAGATTATTTTGAATGTGATACTAATTTGGCCCAACCAATTACGAAATTTAGGAAGTCCTAATACGCCCTGCTTCTGTTTTAGGTATGCAACCGCAAGTGCACGTTCAGATGGTCTTCTTCTGCTCTGTGGAGGGAGGGATGCCAATAGTGTGGTGAGTCAAGCATATACTTTTTATACTGATTTATTTGTTCTATCATATTGCTATGCCTTGCAGTTAGATCACAATGTCATCATGGTGCTCTTCTCTTTCGTAACTGGTCAATTTTTCTTACCTTTTTTGTTGCCTTGGTTATTCATAGCCTCTGGCAAGTGCTTATGGACTTGCCAAACATAGAGATGGACGTTGGGAATGGGCCATTGCCCCTGGTGTGTCACCCTCTCCCAGATATCAACATGCTGCAGTAAGTGTGTTTTTTCATTTACATTATATTTCTCCTTTCTGGCAGGGATCATAAGGGAGTTATCAGTTGTTTATGGTAACAGGTTTTTGTTAATGCTCGGCTGCATGTATCTGGAGGGGCACTTGGTGGTGGACGCATGGTGGAGGACTCATCCAGTGTTGCGGGTATTTCCTTTATGCTCTCTGTATTGATTGCTTGTTTAGATTAACACTTTCTGATATAGCTTTAAAAAAAGAACACTTCCTCATTTGGTTATATCTTTTACTTTTCCCTTTGGTCGGGTGTGATGTCATTCTCACAGCCATGTTTCTTCTTTCTTCCTTCTCTTCTTTTGGCAGTTCTTGATACAGCTGCAGGAGTGTGGTGTGACACAAAATCTGTTGTGACTAGTCCTAGGACTGGCAGATTCAGTGCAGATGCAGCTGGTGGAGATGCTGCTGTTGAATTGACCAGACGCTGTAGGCATGCAGCTGCTGCTGTTGGGGACTTGATATTTATCTATGGTGGTCTACGTGGCGGTGAGGCTATATATATGCATGCTCAATAACTGCTTCTCTTTGTTGCAAAGATTGGAAAAAGTTGATGCATACCTTTCACTTTCTTTTCTAATAATCATTTCTCCTCCTATGCCCTCCTCGCAATAGCCCACTTTAAAATTCAACCAAATGTAGGATAAAGCTTCAAATAGAATCTATCCTTACTTTGCTTATAAATCCCAACAAACTAACTTCTCCGACGATACAGCCTGACTAAAATTAAAAAATAGACCCCAACATCTGATTTGTACAAATCAGATCCTAAGACAGAAGACTATAAATTTAGGTCAAAACCCAAACAAGCTTGCGAAGTGCTAAACTATGTTAAACATCTACATATCTGCACCACTTAGTGGTTTGATATAAACTTGAAACTTAACACTAATGTGTGAATTCTAAAGATTATTTTTATTTATTAATGAATATTTTCCCTCCCCGGGGGCATAGTGTGGCATCTGGATCTTTTCATCGGGCGCCATTTCTTTTAGATCAAAAGGTGGTCTGACTCTATTGGATCAAATCATAAGCTAAGCCGTGCTAGGAGCTAGGTGGCTCAAGAAAGAACAAAAAAGTGAAATTTAACCTTTTGAATTCACAAGCACCTCATAATTCTCTGAGAAATGATTACTCGGTATGCAAGCGGATAATGTCTCTCTGGTGGAAAATAGTGAAATATCTGTCTTGTCCATGATGAGATACATGAAAACAATTAGTTGTGCCTTTCTGTCAAATACCTGACTTTGAAACTTAAGGCATTGATATTCAAGAGGAGGTATTTGTGGGTATGAAGGCAATATATTACTTAGCCGATCTCATATTAAATTTATATGTAGGTGTTGCAGTTATGTTCACAAATGAAGTGTTTGTTGACTATCCGAACTGCTGCAATGAGTGCTTCTCTAATCTCTCCTCACATGAGAACCTCTGGAGCAGTTATTTGGATCACTTGCTGGTTTCTGCTGCGAGTGTACTAAGCTATTAAAAGTTGCTGATGTTTGGAACCCTTCTATGCAAGGCAATTATTTACTTGTCACCAATTTCGCAGGTGTACTGCTGGATGACTTGCTTGTTGCTGAAGACTTGGCTGCCGCAGAAACAACAAGTGCAGCTTCACATGCCGCAGCTGCTGCCGCCAATCTACAAGATGGCAGGCTTGCTGGGAGGTATGGTTTTGGTGATGAAAGAACGAAGCAAACAGTTTCCGAGGCAGTTAATGATGGTTCTGTTGTACTGGGAAATGCTGTTGCTCCCCCTGTAAATGGCGATATGTATACTGATATAAGTACTAAGAATGTCATGCTTCAAGGATCTCGGTGAGTCTACAATTGCTTAATAATGGCAGTGCCTATTGTGCCAGCTAATGGCAGTGCCTATTGTGCCTGCTGTCATCCTTCTTTAAATTCTGTTGTTGCCTTGGTTCTCAGTTTCACCATCTTGGGTTTGTTTTGTAGGAGACTCAGCAAAGGTGTCGAATATTTAGTGGAGGCCTCTGCAGCAGAAGCTGAGGCTATTACTGCTGCACTAGCAGCTGCCAAAGCTCGACAGCAAGGTAATGGAGAAGTCGAACTTCCTGATAGGGATGGTGGAGCAGAGGCTACACCAAGTGGAAAAGCAGCATCTTCTTCAATCAGTTTAGATTCTTCCGGATCGAATAATTCTGCCCCAACTGGTGTCCGTCTTCATCATCGTGCCGTTAGTATTCAGATCCTTTATGCTATGTCGTGCTATCTGGTTAAGTTTGGAAAATAATAGACTGATGATGTGCCTTTAAACATTTATAGATAGTTGTAGCTGCAGAGACTGGTGGTGCTCTTGGTGGTATGGTACGACAGCTTTCTATCGATCAATTTGAAAATGAAGGCCGGCGAGTCAGTTATGGAACCCCAGAAAATGTCACGGCAGCACGAAAACTTTTGGATCGACAAATGTCCATCAACAGTGTTCCGAAAAAGGTACAATAAGTTATTGTGTGCTTCAACTAGTTAGGAAACCCTTTGATGCTGTGGTCCCACCTAAAATTCCTCCGTTTAGGAAACTTATAGGTCCCTAAGACAATGAATGTCCACATGAAGAACAAATGGAAGACAAGTGAAGAAAAGAAATTGAGTTTTAAATTTTTCCTGATGTATATATTGTGACCTTGGGTGGGGGGAAGAGAGAGAGTGGTGGGTTGGGAGAGTACAGGAGAAAGAGAAGAAGATTCCCGAATGGGAGAAAATACTCCGGGCAGTTGGCCCATTGCTATTCACAGTACTCAACAGATAAACATATATCCGGTTCGCAGAATAATTGCTATAAGCTTAGGCGGTCTTGTTCCTATTAGAACACATAGCTTTTTGTGTTTGTTATAATCTTTTGCTCTTTCTTTCTGTCTCAGTTGATCACCCATCTTTTGAAGCCTCGGGGTTGGAAGCCGCCTGCGCGACGAGAGTTTTTTTTGGACTGCAATGAGATCGCCGATCTTTGTGATAGTGCCGAAAGAATATTTGCTAGTGAACCTACTGTATTACAGCTAAGGGCTCCTATTAAGATATTTGGTGACTTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGC-TTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAG-TTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATA</genome_strand>
        <mrna_strand>TTTTATTATAGTATTGATATGGATGTGGATTCAGCTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCGGCAAAGTTCACAAACTCAGCAACAGCAGCAGCGAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTAGGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCTTCTGCTGGAAGTGCTGGAATTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325795" ref_strand="+" ref_description="SGN-E325795 [cTOC-12-C6]">
      <seq>attatttttagtattgatatggatgtggattcaactagggtggggtgagtccgatcacgatccgactgttcagaatgatagttcgacgtcggaacaacagcttaatgatgagtcttcaacttcgttgcagcagcaaagttcacaaactcagcaacagcagcagcaaagtagtagtagtagtagtgttcctgctgttgcgggaccaaggtgtgctccgacgtattcggtggtgcacgaagtgatagagaagaaggaagatggtccagggccaaggtgtgggcatacgttaacggctgtaccagctgttggtgaagaaggttctcctaattatattggtccaaggcttattctttttggtggtgctactgctcttgagggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="71083" stop="72064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71391" g_stop="71764" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="384" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E325795" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71391" e_stop="71764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTGATATGGATGTGGATTCAACTATGGTATCG-GAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTC</genome_strand>
        <mrna_strand>AGTATTGATATGGATGTGGATTCAACTAGGGTGGGGTGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568467" ref_strand="+" ref_description="SGN-E568467 [12755]">
      <seq>gttgtcagctgaggatcttcacgttctggaccttactcaacaacggccaaggatggcacagggttgtggtgcaaggacctgggtccagtccgcgttatggacacgtcatggctttggtagggcaaagatatctcatggcaattggcggaaatgatggaaaacggctctacggatgtttgggctttggacacggctgccaagccatatgaatggcggaagttggaaccggagggtgaaggtccacctccttgcatgtatgcaaccgcaagtgcacgttcagatggtcttcttctcctctgtggagggagggatgccaatagcgtgcctctggcaagtgcttatggacttgccaaacataagatggacgttgggaatgggcattgcccctggctgtgtctacctcccccagatatcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="72454" stop="74211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72753" g_stop="72812" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72813" i_stop="72910" i_length="98">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72911" g_stop="73005" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="156" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73006" i_stop="73087" i_length="82">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73088" g_stop="73187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="254" r_length="98" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73188" i_stop="73597" i_length="410">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73598" g_stop="73667" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="324" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73668" i_stop="73815" i_length="148">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73816" g_stop="73911" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="419" r_length="95" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E568467" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72753" e_stop="72812"/>
          <exon e_start="72911" e_stop="73005"/>
          <exon e_start="73088" e_stop="73187"/>
          <exon e_start="73598" e_stop="73667"/>
          <exon e_start="73816" e_stop="73911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCAGCTGAGGATCTTCACGTTCTGGACCTTACTCAACAACGGCCAA-GATGGCACAGGTTAGCACCTTTCGAGTAATGTCTATAGTTATCATAATGAATGTTGCCTGTGCGTGAATCCATGACGAACTTGTGTTAAATGATTTTGATCTTATCAGGGTTGTGGTGCAAGGACCTG-GTCCAGGTCCGCGTTATGGACACGTCATGGCTTTGGTAGGGCAAAGATATCTCATGGCAATTGGCGGAAATGATGGTTAGTCTGATATCTGAGTCAGATATATTTATTTCAGCAATGACATGGTTTAGAAAAATATTAATCATTCTATTGTATTCAGGAAAAAGGCCTCTAGCGGATGTTTGGGCTTTGGACACGGCTGCCAAGCCATATGAATGGCGGAAGTTGGAACCGGAGGGTGAAGGTCCACCTCCTTGCATGTAAAGTTCATATTCTCTCACTTGAAGACGTGTACTTTATTTTCTTTGTTACCCAATAAATTATCGTTTCTCTTGATTTGTATTTATTTGCTTATTCAGAATTCTATACTTTAAAGGTAGCAAATCTCAAGAATTACTTGTACATATCTGTAAGTATTACATGCTGTTACTAGTGTCAATGATGCATTGTCTGTTTAGTTAGCTTGCAAATTATGTGTATGTGATCTGATTAGGGAGTGTGTCTGATCTTTTATATGAAAAGTTGTTTATCCTGGAGCTGTATGTGTAGAACAATGTTTGTTCATGCTTGTTGGAGATCAATGCCATCAGATTATTTTGAATGTGATACTAATTTGGCCCAACCAATTACGAAATTTAGGAAGTCCTAATACGCCCTGCTTCTGTTTTAGGTATGCAACCGCAAGTGCACGTTCAGATGGTCTTCTTCTGCTCTGTGGAGGGAGGGATGCCAATAGTGTGGTGAGTCAAGCATATACTTTTTATACTGATTTATTTGTTCTATCATATTGCTATGCCTTGCAGTTAGATCACAATGTCATCATGGTGCTCTTCTCTTTCGTAACTGGTCAATTTTTCTTACCTTTTTTGTTGCCTTGGTTATTCATAGCCTCTGGCAAGTGCTTATGGACTTGCCAAACATAGAGATGGACGTTGGGAATGGGCCATTGCCCCTGG-TGTGTCACCCTCTCCCAGATATCAACAT</genome_strand>
        <mrna_strand>GTTGTCAGCTGAGGATCTTCACGTTCTGGACCTTACTCAACAACGGCCAAGGATGGCACAG..................................................................................................GGTTGTGGTGCAAGGACCTGGGTCCA-GTCCGCGTTATGGACACGTCATGGCTTTGGTAGGGCAAAGATATCTCATGGCAATTGGCGGAAATGATG..................................................................................GAAAACGG-CTCTA-CGGATGTTTGGGCTTTGGACACGGCTGCCAAGCCATATGAATGGCGGAAGTTGGAACCGGAGGGTGAAGGTCCACCTCCTTGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCAACCGCAAGTGCACGTTCAGATGGTCTTCTTCTCCTCTGTGGAGGGAGGGATGCCAATAGCGTG....................................................................................................................................................CCTCTGGCAAGTGCTTATGGACTTGCCAAACATA-AGATGGACGTTGGGAATGGG-CATTGCCCCTGGCTGTGTCTACCTCCCCCAGATATCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453605" ref_strand="+" ref_description="SGN-E453605 [cSTS-20-F19]">
      <seq>gttttacagctaagggctcctattaagatatttggtgacttacatgggcaatttggggatctcatgcgtctttttgacgagtatggttccccgtcaactgctggggatattgcgtatattgattacctcttcttgggaagattatgttgataggggccagcacagcttggagaccattactcttctccttgctttaaaggtcgagtatcctcacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgttcaactggcttcctctggctgccctgattgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatgggagttttgcaacaacaatgatcttcaactaataagtccgtgcccacgaatgtgtgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="76657" stop="80596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76957" g_stop="77069" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77070" i_stop="78887" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78888" g_stop="78972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="199" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79058" g_stop="79156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="298" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79233" g_stop="79432" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="498" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="574" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80222" g_stop="80296" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="651" r_length="77" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E453605" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76957" e_stop="77069"/>
          <exon e_start="78888" e_stop="78972"/>
          <exon e_start="79058" e_stop="79156"/>
          <exon e_start="79233" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTACAGCTAAGGGCTCCTATTAAGATATTTGGTGACTTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGG-AGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGAT-GGAGTTTTGCAACAACAATGATCTTCAACTAAT-AGTCCGAGCCCACGAATGCGTGATGGAT</genome_strand>
        <mrna_strand>GTTTTACAGCTAAGGGCTCCTATTAAGATATTTGGTGACTTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGATTACCTCTTCTTGGGAAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACTCTTCTCCTTGCTTTAAAG.....................................................................................GTCGAGTATCCTCACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTCAACTGGCTTCCTCTGGCTGCCCTGATTGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGGAGTTTTGCAACAACAATGATCTTCAACTAATAAGTCCGTGCCCACGAATGTGTGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260159" ref_strand="+" ref_description="SGN-E260159 [cLEG-52-B13]">
      <seq>ttacatgggcaatttggggatctcatgcgtctttttgacgagtatggttccccgtcaactgctggggatattgcgtatattgattacctcttcttgggagattatgttgataggggccagcacagcttggagaccattacccttctccttgcattaaaggtcgagtatccttacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgncacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="76696" stop="80597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76996" g_stop="77069" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77070" i_stop="78887" i_length="1818">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78888" g_stop="78972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="159" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79058" g_stop="79156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="258" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79233" g_stop="79432" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="458" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="534" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80222" g_stop="80297" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="610" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E260159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76996" e_stop="77069"/>
          <exon e_start="78888" e_stop="78972"/>
          <exon e_start="79058" e_stop="79156"/>
          <exon e_start="79233" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGCGTAAGTGCCTTGACAATCTTGCATTTCAGTATATTTTTTAGTTGAAGTGTTCGTTCGAATCTATGTTGCCTAGTCCGTGTCGTGATTGAAATTACTGAAATTATAGCAGTTTCAACTAGGGATAGGCATTCATTTGTTCAAAACTTCGGTTCGGTTCTTTGATTTTAGTTCTTCACTGGTGCATACCGAACCAAACGATTTTGTTTTTTTTCTATTTCGGTATGTGATCTAAGTTTTCTAACTTTGATGCTATTATCGGGATGCTCCATTTTTGAGTTTTTCACGTGAAGCGAGGCCAGTCTTGCCAAGCATTGTAAATAAAACATTGACATTAGAGAGCAAGGAAATAGCTAAGGATTTCCTTACATGTACCACTTCCAAGCTGTCCAACTGGCTATAATGAAGAGTTGCTTTTAAAAAATTCCTTTGGTCCCAACTCCTACAATTATTAGACATTGTCCTCTTTGAATGTACCTGCATGTATCTTATAAATCTTTGACAATTTTATTCGTATTATACCATTTTGAAGTGCAGTTTTGATTTCATGGATTCTTTAGTACAAAAAACCTTGCATATTCTGAATTTGCAAATAAGATTAACACTTCTATTTTAATTCACATCTGTCTGTTAGGTGAGGGATCAAACCTTTTATTGCCCTCCTCCATTTACGCAGGTCTTCCATTTCCCCGATTTTGTTTGAATTCCACTTCTTTTTTCTGGGAAAAAGTGAAGGAGAAGGAACTTCTTGAGTGAATCCATCTTTTTCCTGTTTAGACCCCTTCATCTCAAACAATTCAATTTCTATTTCTGACCCTTTTTCACTGTTCAGTATGTTATTCTTTGGGTTTTTTTTTTAGAAGGTAACAACTTGTATTCTATTCCAAAACAAAAACCAGAACCTGCCACAAACAAATTACTACATCTCTCTTCCTCACTTTTCAAGGTGGTGTATCTTATGCTTCTTTTAGTGTTACTTTAACTGTAGGTTCTCTTTCATAATTTTTCACTCGAGGCATCTACTAAGAGAAATATTCTTAGGGCCTGTTTGGACATGCATTATGAAATCATGATTTGTAATCAGATTGATTTGAAGTTTTATTTCGTCATGCATTTTGAATTTTTTAAGTTGTATTTTTCTCATAAATGTGAATACCCTACTAGTTGTGAAAAGTGAAAACTATCAAAATTTCTCTAATTCTTACACAATCTTACCAAAATAGCAAATCATAATTCATAAACAAGTATTGAGATATCCTACGGCACTGCATTGATAAATCGCATATGTCTATGTTCCTTTTATGAATAAATGTTTGTGATTACAAACTTTCAAAATACGCTTAATTTTATTAAGATCCACTAGTAAACAATAGTTGTAACAAGTAATTCTTTTATATAATGTTTTCACAAGGTTCCTACAATCTCCACACCGAATGTTTTCTTTACATAATATGAACTTATGGGTCAAACATTTTTGAAAAATTGAAATCACTATTTGAACTCTCCAGGAATTGAAAAGCTCTTTTGGAGGATCCTGATTAAAATAGTCTTTGAAGAAAAGATTAAGACAGGACTTTGCAGTTAATTTGTTTTGTTGGAATAATATAATATATAGTGATTGGATTGTGTGTAGCCTAATAGTTTTGTTCTGTCTAAATTATCAACTTCTCCTCCCCCCCCCCCCCCCCCCCCAATTTTTGTAGTTGATAGCTAAAATGATCTTTTTCCAATGTCAATATGCACTTCTAATGCTGTTCCTTTGGTACTAATTCTTTTTTCAGTAAATGCTAATTTGCTAATCTTGTGTAATCGATTCTTCAGGTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATG</genome_strand>
        <mrna_strand>TTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG.....................................................................................GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGNCACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573178" ref_strand="+" ref_description="SGN-E573178 [32448]">
      <seq>cctcgtgccgtgatttaccctcttcttgggagattatgtgataggggccagcacagcttggagaccattactcttctccttgctttaaaggtcgagtatcctcacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgttcaactggcttcctctggctgccctgattgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggttcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgtgcccacgaatgtgtgatggatggctttgaaagatttgctcagggggcatttaattacgcttttttcagccaccaattactgtggtactgctaacaaatgctggtgccatttgggtattgggtagagatcttgttgtggttccaaaactttatccacccaattccgccagtttcatcggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="78594" stop="80842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78888" g_stop="78972" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="90" r_length="81" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79058" g_stop="79156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="189" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79233" g_stop="79432" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="389" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="465" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="602" r_length="137" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="0.92"/>
            <acceptor a_prob="0.904" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80447" g_stop="80542" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="701" r_length="99" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E573178" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78888" e_stop="78972"/>
          <exon e_start="79058" e_stop="79156"/>
          <exon e_start="79233" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCA-GGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAAC-AATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAAC-TTATCCACCCAATTCCGCCAGTTTCATC-GCCTG</genome_strand>
        <mrna_strand>GT-GATT--TACCCTCTTCTTGGGAGATTATGT-GATAGGGGCCAGCACAGCTTGGAGACCATTACTCTTCTCCTTGCTTTAAAG.....................................................................................GTCGAGTATCCTCACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTCAACTGGCTTCCTCTGGCTGCCCTGATTGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGTTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGTGCCCACGAATGTGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGGCATTTAATTACGCTTTTTTCAGCCACCAATTACTGTG.........................................................................................GTACTGCTAACAAATGCTGGTGCCATTTGGGTATTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTTATCCACCCAATTCCGCCAGTTTCATCGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245589" ref_strand="+" ref_description="SGN-E245589 [cLEF-43-B1]">
      <seq>gagattatgttgataggggccagcacagcttggagaccattacccttctccttgcattaaaggtcgagtatccttacaatatacatttaatacgtgggaaccatgaagcttcagatataaatgcgctctttggctttcgaattgagtgcattgaacgcctgggtgagagagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcangggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="78611" stop="80764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78911" g_stop="78972" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79058" g_stop="79156" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="161" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79233" g_stop="79432" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="361" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="437" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="573" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80447" g_stop="80464" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="591" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E245589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78911" e_stop="78972"/>
          <exon e_start="79058" e_stop="79156"/>
          <exon e_start="79233" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAGGTATCTATTTGCTATATACTTGTGATACATTTCCACTTTCGGAATTGCTCTTTACTGATTTTAATGGCACATAACTGTTTGTTAGGTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTGGTATGCTACTATCATTTACCAATTGGAAGTCCTCCTTCCCTCTTCTAGTTGGTTACTGATCTTCTTTATGGAGCAGGGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTG</genome_strand>
        <mrna_strand>GAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG.....................................................................................GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG............................................................................GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCANGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287352" ref_strand="+" ref_description="SGN-E287352 [cLES-15-I17]">
      <seq>agagatggaatctgggcatggcatcggattaatagattgtttaactggcttcctctggctgccctgatcgagaaaaaaatcatctgtatgcatggtgggattggaaggtccattaatcacgttgagcaaatagagagtatccagcgtcctatcactatggaagctggctcaatcgttctgatggatttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaggggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="78939" stop="80818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79239" g_stop="79432" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="270" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="406" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80447" g_stop="80518" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="478" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E287352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79239" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACC</genome_strand>
        <mrna_strand>AGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369787" ref_strand="+" ref_description="SGN-E369787 [TUS-25-C17]">
      <seq>tttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaggccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaggggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccagaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttagattcttttcctatactttgagcttcatgctcttaacatctgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttgaagatctataaggctttttgaggcactcagtacaatacacaacaacagcccttcagacagattgcaggcacagaagcagtcaaaagtttcccattgtacatttgacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="79204" stop="81262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79424" g_stop="79432" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="85" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80447" g_stop="80583" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="358" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80665" g_stop="80962" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="657" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E369787" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79424" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80583"/>
          <exon e_start="80665" e_stop="80962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACA-TTGACAAACA</genome_strand>
        <mrna_strand>TTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTTGACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247402" ref_strand="+" ref_description="SGN-E247402 [cLEF-46-L19]">
      <seq>tttgttgtggtctgacccaacagaaaatgatagtgttgaaggactaagaccaaatgcaagaagccctggcttggtaacttttgggcccgatcgtgtgatggagttttgcaacaacaatgatcttcaactaatagtccgagcccacgaatgcgtgatggatggctttgaaagatttgctcaagggcatttgattacgcttttttcagccaccaattactgcggtactgctaacaatgctggtgccattttagtactgggtagagatcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcacctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccagaagccgtccccaagttgcgaacgatcgaagttcttttgcttggacttagattcttttcctatactttgagcttcatgctcttaacatctgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="79204" stop="81152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79424" g_stop="79432" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79509" g_stop="79584" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="85" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80222" g_stop="80357" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="221" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89">
            <donor d_prob="0.844" d_score="0.98"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80447" g_stop="80583" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="358" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80665" g_stop="80852" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="546" r_length="188" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E247402" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79424" e_stop="79432"/>
          <exon e_start="79509" e_stop="79584"/>
          <exon e_start="80222" e_stop="80357"/>
          <exon e_start="80447" e_stop="80583"/>
          <exon e_start="80665" e_stop="80852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTGTGGTTAGCCCATGTCTTCTCTTTTTCCTTCTTCCATTTTGACATTGTCCTATTTTCTAAAATTGATTTATGCATCTAGGTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGGGTAACTTATTTTACAACTTCTTTGAGACTACTGATTCTCTTAATTCTTCATTTCACAACTCTTAGATTTTTTTTTTTAATGTTAAAAGCTGCAATATTCTTCTCCATTTGGGAGAACTGAAGTTAGTTACAGTGACTCATAAAGGAATGGAATTTGCCCCAAAAAAATCAGTTGCCTCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCCGTCCACCCCTTGCTATCTTTTGTATTTCATCACTGCGCAGTATGTCATTTCTTACGTATTTTTTCTTAGTTCCGTTGGGCTATTGTAGCTCCTCATCTGCAATTGTTCTTGTCTTCATTTATTTCTGTGGTTGGACAATCTTAATTTGTCTGTCCAGGCTCTTTTCTTTAAGAAGTACTAAATTCATAATCCTTGAAACAATATTATCTTAAAAGTTCTGATGATTGGGATATCATTTTTCTAGCTTTTGGTGTTGGATCTTTGGTCCATGACAATCACTGGTCATTCCTCTTTTTTGTTGCCAGATTTGTTGATTGCATGTAATTTCTATAGCATCATTCCTCTATTGCACTTATGTAAAAACTTTCCTTTACATGCAGCCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCGGTATGTCTGTTCTTACTGATTTTGGATGCTCAGAGGATTATTTTCGACGTTTTCATCTATATAAGAGGACTCCTCTTCTACTGCTGCAGGTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTG</genome_strand>
        <mrna_strand>TTTGTTGTG............................................................................GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAAGCCCTGGCTTGGTAACTTTTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAAGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG.........................................................................................GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAAGCCGTCCCCAAGTTGCGAACGATCGAAGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369786" ref_strand="+" ref_description="SGN-E369786 [TUS-25-C17](-)">
      <seq>tcttgttgtggttccaaaacttatccacccaattccgccagtttcatcgcctgaaaattcccctgaacggcatatagaagacacttggatgcaggagttaaatgctaacagaccccctacaccaaccaaaggccgtccccaagttgcgaacgatcgaggttcttttgcttggacttaaattcttttcctatactttgagcttcatgcttttaacatttgggatttccagtgatatgtacataggcatgaagccatttgtggagacaaatatatccctctttaaaaatctataaggctttttgaggcactcagtacaatacacaacaacagcccttcagacagattgcaggcacaaaagcagtcaaaagtttcccattgtacattgacaaacaaaatcatatcatcatgtattactaaaagtgggaacaaaaaaaaaaagttaacggttttacccctattaaattattttttataaaaaattagttaattaaataattacatgttttttaaaaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="80190" stop="81386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80490" g_stop="80583" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80665" g_stop="81087" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="517" r_length="423" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="548"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E369786" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80490" e_stop="80583"/>
          <exon e_start="80665" e_stop="81087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAGGTTGTCTTTTTTCCCCCATATATCTTTTTGTGCTTTGATCTAAGTTGTGTGGGTCTTGTTAACACACACTATCTGTTATAGGAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</genome_strand>
        <mrna_strand>TCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCCCCTGAACGGCATATAGAAGACACTTGGATGCAG.................................................................................GAGTTAAATGCTAACAGACCCCCTACACCAACCAAAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAAATTCTTTTCCTATACTTTGAGCTTCATGCTTTTAACATTTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTAAAAATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAAAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAAAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTTTTAAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302708" ref_strand="+" ref_description="SGN-E302708 [cLEY-1-O11](-)">
      <seq>gcttgaagaaagatgaggaagaaccaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagctgaaaaccagaagatcccaataaatcttacgttcaacgacctgtgaaacgagggtaaaacacatgtacgtcaactagttttggttcagtgatatttaaagcttggatccatttggatccggagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatttctgtttatgaactgaatcttgataggattatttgtgatatgttatatgctaatatgcatatacgacgggtgactattgtggagttttatatatgaaacttgatccctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="83801" stop="81440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83501" g_stop="83413" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="128" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82111" g_stop="81740" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="501" r_length="373" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E302708" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83501" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAA-CAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</genome_strand>
        <mrna_strand>GCTTGAAGAAAGATGAGGAAGAACCAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGCTGAAAACCAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGGTAAAACACATGTACGTCAACTAGTTTTGGTTCAGTGATATTTAAAGCTTGGATCCATTTGGATCCGGAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356361" ref_strand="+" ref_description="SGN-E356361 [cTOS-20-D1]">
      <seq>ggatttgtgccaactgctgcgcaagattcattaaatggagatgtgttctctaccagaactttttccattttcaggtctcaatgctgagacttctggttaaagatggaggaattctaaccatccgaccacaatcccgggtgacaaacatgataatattattgaacctaaggtcttcagaacatgataattgttatgaacctaatcttcatgatgatatgaaattgtaaagttgaagacaaccgacatgttccaaaatctagacttactgaattgagtttctaaaacttttcttctatttctcatcaggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagaatttctgttatgaactgaaatctgatanggatatttgtgatatngtatatgctaatatgcatatacgacgggtgactattgtggagntttatatatgaaacttgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="82878" stop="81454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82578" g_stop="82234" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82111" g_stop="81754" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="703" r_length="358" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E356361" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82578" e_stop="82234"/>
          <exon e_start="82111" e_stop="81754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAG-ATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCC</genome_strand>
        <mrna_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGAATTTCTG-TTATGAACTGAAATCTGATANGGATATTTGTGATATNGTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGNTTTATATATGAAACTTGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551957" ref_strand="+" ref_description="SGN-E551957 [cTSB-2-G13]">
      <seq>catccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatntctgtttatgaactgaatcttgataggattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="87463" stop="81530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87163" g_stop="87129" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="96" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="174" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="248" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="362" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="470" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="509" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82111" g_stop="81831" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="790" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="804"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E551957" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87163" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATT</genome_strand>
        <mrna_strand>CATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATNTCTGTTTATGAACTGAATCTTGATAGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746783" ref_strand="+" ref_description="SGN-E746783 [GI|47104499]">
      <seq>agacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattttagatgtatatttagctagacaagtacattcatatatttcatttgacacagatttctgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88626" stop="81549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88326" g_stop="88207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="272" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="350" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="424" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="538" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="646" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="685" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="82111" g_stop="81854" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="943" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="944" polyA_stop="958"/>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E746783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88326" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTT</genome_strand>
        <mrna_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214409" ref_strand="+" ref_description="SGN-E214409 [cLEC-77-M4]">
      <seq>ttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgnttcacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatattttaagcttgtatcaatttgtatccgtagctaacttaattattctgcagcaaaatatatttagcgccctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="84514" stop="81615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84206" g_stop="84131" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="89" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="203" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="311" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82111" g_stop="81915" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="547" r_length="197" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E214409" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84206" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTT</genome_strand>
        <mrna_strand>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGNTTCACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTTAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352648" ref_strand="+" ref_description="SGN-E352648 [cTOS-11-I9]">
      <seq>ggatttgtgccaactgctgcgcaagattcattaaatggagatgtgttctctaccagaactttttccattttcaggtctcaatgctgagacttctggttaaagatggaggaattctaaccatccgaccacaatcccgggtgacaaacatgataatattattgaacctaaggtcttcagaacatgataattgttatgaacctaatcttcatgatgatatgaaattgtaaagttgaagacaaccgacatgttccaaaatctagacttactgaattgagtttctaaaacttttcttctatttctcatcaggtgtccagttggagagatttcatgaagggaggaaagaaggttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaagctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatcaatttgtatccgtagctaacttaattattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="82878" stop="81642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82578" g_stop="82234" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82111" g_stop="81942" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="515" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E352648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82578" e_stop="82234"/>
          <exon e_start="82111" e_stop="81942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTG</genome_strand>
        <mrna_strand>GGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAAGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706617" ref_strand="+" ref_description="SGN-E706617 [FA30BH02]">
      <seq>ggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgaggtaattctgtttagtaggctcttctgcaatgtcttctcatcagattatccaactcgaatgtctatgattaactggaattgttgtccctggatttaaaatggggaattttcttcctgatgttatctgtagctttggttggcctcttttttcttacattgagaaccgtgttaatcattgcccaaccaccttgaactgtgcttatatggcaccttgattttctccaagcaactagagttgttttggactgtctctcacctatctgttagaaaacttttgttgaattcctcatgttgtctaccccaaaggttgagataagggaatgtttgatagtagttaattgagcatttatgaaatccatgttaccatgaaattgaaaattagttttcttaatttgagatggttgatttcttgactaatagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaatcttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggaactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaagaaagttaagaaaggagaaattcgacctccaaagttgaaaacagaagatcccaataaatcttacgttcaacgacctgtgaaacgaggctaaaacacatgtacgtcaactagttttgtttcagtgatatttaaagcttgtatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="84486" stop="81671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84186" g_stop="83598" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="697" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82272" g_stop="82234" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="736" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82111" g_stop="81971" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="877" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E706617" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84186" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82234"/>
          <exon e_start="82111" e_stop="81971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAGGTAAGACTGTTATTACCTTATATTGCAAACACTATACTTTTCCCATCCCATATGAAGATAATGAGGGGAATGTTTATAGGTCGACGAGAACACTAATGAACAAGTTCTCTGTGCTTCTGCAGGTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAAT</genome_strand>
        <mrna_strand>GGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATGTTATCTGTAGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATCTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAA..........................................................................................................................GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320354" ref_strand="+" ref_description="SGN-E320354 [cTOB-22-M15]">
      <seq>tttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggtgaaagaaattttaacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaagaaagcgtgagcatgaagagcagtgggaaggactagagaaaacagggtgtccagttggagagatttcatgaagggaggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88636" stop="81937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88336" g_stop="88207" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="434" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="548" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83520" g_stop="83413" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="655" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140">
            <donor d_prob="0.965" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="82272" g_stop="82237" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="691" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E320354" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88336" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83413"/>
          <exon e_start="82272" e_stop="82237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGGGTTAGTTTTCAATGCATTATGTATCTTGCTGTTTCCGAATACATGAACCTTGCAGACTTATATTACAAACTTCTATATATCTAGTCAATTGTCTAGTGTTGGTTCACAGTTTGTTTTATCCGGAAAAAAGTTCCAATGCTACATTTGGCATGTTTGTTTTATTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAG</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGG-ACTAGAGAAAACAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599115" ref_strand="+" ref_description="SGN-E599115 [52095]">
      <seq>tttccatttaaaccggctgacttgaattccattgtatgttcatttgaagtatgtttttctttcaaataattcagcatggtcgaagtttatacaaactacttaatagtcttgtttcatgagttgttaggattatatgtgcaattttatgtacattttctgcacaaaatttaacctttcgtatgtcctctgcttgtgtttgatgtggctataaaataaaatccctgaagtaactactacttgaaagttgcatctcggtgtattcttgtattttgtgtaaacttctaagataaaaagtatttttgggttcacttttcttgttctaaaaggagcagaaaaagaaacaaggctattccttcttgctttaagggaggagggggttctggctctgtgctgggtcatgggtatctcatctcttagctaagagcctaagacatgatgctacaggaaccaagcaaatgactctcttgatttcaggaacttgaagttgttgacgattgcctatgaacttgagtgggttatgtcatctattatgtaactttacttttactatgaagattcttctttgaatctctattgtcttttttttttgtagcaaatgatacaactagtaacataggtgtttgggttctttggaacataataatctttttttttgtttcccactcggtgtccggtatccgttttggggcaccaactgatccggatttgtgccaactgctgcgtaagactcattaaatggagatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="83559" stop="82234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83251" g_stop="82534" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="746" r_length="708" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E599115" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83251" e_stop="82534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTG</genome_strand>
        <mrna_strand>TTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACAAACTACTTAATAGTCTTGTTTCATGAGTTGTTAGGATTATATGTGCAATTTTATGTACATTTTCTGCACAAAATTTAACCTTTCGTATGTCCTCTGCTTGTGTTTGATGTGGCTATAAAATAAAAT-CCCTGAAGTAACTACTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACTTCTAAGATAAAAAGTA-TTTTTGGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACAAGGCTATTCCTTCTTGCTTTAAGGGAGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGGGTATCTCATCTCTTAGCTAAGAGCCTAAGACATGATGCTACAGGAACCAAGCAAATGACTCTCTTGATTTCAGGAACTTGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGGTTATGTCATCTATTATGTAACTTTACTTTTACTATGAAGATTCTTCTTTGAATCTCTATTGTC--TTTTTTTTTTGTAGC--A--AATGATACAACTAGTAACATAGGTGTTTGG-GTTCTTTGGAACATAATAATC-TTTTTTTTTGTTTCCCACTCGGTGTCCGGTATCCGTTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGTAAGACTCATTAAATGGAGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481912" ref_strand="+" ref_description="SGN-E481912 [cSTD-20-G13]">
      <seq>tttcaatgggagacaacagcgatacaaccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgcttctgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccgtttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaaggcagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggagctttagcaaaagcccagaaattattactcgatcctcaagagagggactatattctgaaccaggttaatgcagcgaaagaagagctgagagcaaagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaaatttgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggttaaagaaatcttgacggaccaagaatggaggaggagaaaaatggcaatgaggatatcggaagaggaaggtcgcttgaagaaagatgaggaagaacaaaagagttgtggaaaaggaagcgtgagcatgaagagcagtgggaaggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88636" stop="83125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88336" g_stop="88207" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="434" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="548" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83520" g_stop="83425" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="643" r_length="95" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E481912" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88336" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACT</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAACCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTTCTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCGTTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGGCAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGAAATTATTACTCGATCCTCAAGAGAGGGACTATATTCTGAACCAGGTTAATGCAGCGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCAAAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATTTGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTTAAAGAAATCTTGACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAG-AACAAAAGAGTTGTGGAAAAGGAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429099" ref_strand="+" ref_description="SGN-E429099 [STM-51-O12]">
      <seq>tttcaatgggagacaacagcgatacaaccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgcttctgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccgtttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaaggcagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggagctttagcaaaagcccagaaattattactcgatcctcaagagagggactatattctgaaccaggttaatgcagcgaaagaagagctgagagcaaagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaaatttgaccaagagcatgagcaatcagaagaattccagcataagctgaagttgaaggttaaagaaatcttgacggaccaagaatggaggaggagaaaaatggcaatgangatatcggaagaggaaggtcgcttgaagaaagatgaggaagaaacaaaagagttgtggaaaaggaagcgtgagcatgaagagcagtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88636" stop="83133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88336" g_stop="88207" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="282" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="360" r_length="78" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="434" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83598" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="548" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="83520" g_stop="83433" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="636" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E429099" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88336" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83598"/>
          <exon e_start="83520" e_stop="83433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGGGTACTTATACCAGTTTCTTCTCTTACTCAACATGTTTTTAGATTTTAATTGAGAATTTATAACTTGATGTTGTGTAGATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGG</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAACCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTTCTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCGTTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGGCAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGAAATTATTACTCGATCCTCAAGAGAGGGACTATATTCTGAACCAGGTTAATGCAGCGAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCAAAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAATTTGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTTAAAGAAATCTTGACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGANG.............................................................................ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGGAAGCGTGAGCATGAAGAGCAGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302707" ref_strand="+" ref_description="SGN-E302707 [cLEY-1-O11]">
      <seq>acaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgaacgcgataatgaagttaacaggatcctttgatagaatcaagttgaatccattcgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgatagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttactgagggaaagttcgaccaagagcatgagcaatcagaagaattccagcataagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88624" stop="83361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88324" g_stop="88207" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.867" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="271" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="349" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84131" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="423" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="83711" g_stop="83661" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="474" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E302707" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88324" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84131"/>
          <exon e_start="83711" e_stop="83661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCAT-GTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTG</genome_strand>
        <mrna_strand>ACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAACGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTGATAGAATCAAGTTGAATCCATTCGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGATAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331599" ref_strand="+" ref_description="SGN-E331599 [cTOD-9-P12]">
      <seq>ttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagatactgctagtaaattgaaatcattagttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88635" stop="83834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88335" g_stop="88207" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="220" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="281" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="359" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84134" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="430" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E331599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88335" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACT</genome_strand>
        <mrna_strand>TTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270333" ref_strand="+" ref_description="SGN-E270333 [cLEM-1-E15]">
      <seq>ggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatattctgaaccaggttaatgcagcaaaagaagagctgagagcacagtggaagaagcagcttaagaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88628" stop="83863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88328" g_stop="88207" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="213" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="274" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85229" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="352" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84204" g_stop="84163" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="394" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E270333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88328" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85229"/>
          <exon e_start="84204" e_stop="84163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAGGTCGGCTGCCCTTTTCTTCAGATTGTCCTCTTGTTTTTGTTTTATCTTGCTTGTGACATTGTCACTGCATCAATAAAGGAGGTAGAAACTGGAGTTGGGAGCCTAAAGGGCCACAATTTGAAGCTAAAATTCCAAAACCGACGACGAGTTGTGGGATGAACAAAAAGGGACAAAGCCCCTCCCCATCCCCAGCGACAAGTAAAAGAGTTTTGATAGCCCACACCAAACGGTCGTTTGGCATGTGGACCATTTTTAATCAATTAGCCGTGCAGCTTTACACGACTTGTTTAGTTTTATAGTTTTAATAAGTGTTAGCAAGCCAACAACTAGCCCTTTTTTCTAAATCATTATTATTTTTTCCAGGATTTGTTTCTTGTTGATTCAATCAACTAGTCGTGTGTTAAAAAACGACTAGTTGAAAAAATGTTAAGGAATCAACTGGAAACAAATCCTCAAAAAAATGACAAGGAATATGTTCAGGAATCTGAATCTAGACCATTCCAAAATAAAATCATTAGCTAGTCATGTGGTAGCCAACAACTTCTAATTTTTTAAAAAGGCTAGTCTTTGGCTGGCCAGCGCTTGATATGAAATAAAATTATTAAATGAGTCATGTAATTGATTTTAAAAAATGGCCTGCACACCAAACAGCCGTTCGGCCTTCAAACTTTTTTGCTAGTCGTTGGGGATGAGGCGTGTTGTCCCTTTTGGTTCATCCCACAATTCGTTGTCCACTTTAGAATTATAGCTTATTCTGGTCCTTTCGGCTCTGGACTTGTAGAAACTGTTTCTGTTGTTATTTGATTGTGGATATTGTCAAAACTATTAGTTATTACATATTTGGCCATACTTATATGGGCAGAGTAACATGGCAAATGCTTCTTTTGTTTGGTGATGTCAGTTCTTGTTTTGTCACTAAATTAGTGGAAACCATAATGTTCTTCATTGAGCTGTATCTTTTTGTGTGGCTTGTGTCTAACACGGAATGTCTCTTTATTTTTCCTCCCATTGGATATGATCACAGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATA</genome_strand>
        <mrna_strand>GGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263777" ref_strand="+" ref_description="SGN-E263777 [cLEG-60-D10]">
      <seq>acagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctccggagaaggattatattctgaaccaggttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88613" stop="84939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88313" g_stop="88207" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="198" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="259" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85239" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="327" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E263777" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88313" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAAT</genome_strand>
        <mrna_strand>ACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCCGGAGAAGGATTATATTCTGAACCAGGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391936" ref_strand="+" ref_description="SGN-E391936 [TUS-27-F8]">
      <seq>agacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctttgcttgttcaccctgacaagtgcaagcatccacaagcaaaggaggcatttggcgctttagcaaaagcccagcaattattacttgaccctcaggagagggattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88626" stop="84954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88326" g_stop="88207" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="211" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="86979" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="272" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85306" g_stop="85254" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="325" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E391936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88326" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="86979"/>
          <exon e_start="85306" e_stop="85254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCGGTGAGGACGATGCTCTTTCTGTGTGCCACTTTATATAATTCCATTCATTTTAAGTAGTTTCTGGAGTGAAAGATTATCTCATTTGTCCGAACTCTTTTGGTTAGGATAAATCTGGCGAAGTAACGGAATTTTGCACATCCTATAGCATTTTAACTGCTAGATATACAACTATGCATTATAATTCTGAGTGTAGTTTTACCGAATTTGTTGCAATTACCTTCAAGAAACCCTCTTATCACATGGAATTGCCTAGTACTGATGAAGAATGTTAATTATAGCAGAAGCTTTCTCTTTTTGAACTAACTCTAGAAATGCGACTCAAGGATAACTTTCCAACCGATTCAATGAACTTGCAGTTCATTTATTTTCAATATTTAATGACTCGTGGTTGCTGATGAAATGCACACAAGTAACATTTGACAGTTTTTGTCACTTGAGATCATGCGAAGCAGTTTATTTTTGGGTGCACTATGACTGCTTAATCTACTATTAAAAAATCCTGAGATCATCTTCGTACTTTCTGTGATAGAGTTATTTCTAAGGGCCTCCTTGACTAGTGTTTTTCCAATTTGTTTGTACAATCATATGGCTAGAGTGTCTTCACATGTGCTGGTTATTTTAACTTACACTGAAACAGATGTTCTTTTCAAGGAAGAGTACATGTGATATGAGTTTGTTGTTTTTATATACTTTTAAGCTGACATCAATTCTGCATATCAGATATTTTTATTTAACTGGTTACTTGTGTGTATTAATAGACAAAACAGTCAAAGCTAAACTGCCATCCTAAACTGTCAAAGTTTTTCTTGATCACCAAGCTTGGCTTGATGCTCGCCCAAGTGGCTTGAGCTCGCCAATGTGGTGCTGCCAACGCCAAAGTGAGGCATTGCAGCTGCCCATTGTCAAAGTGCTGCATTGTATTAAAGTGAGGCTTGCTGATACCAAACTTGGCAGTCTCTCTTTCCCTCAGGCTCCAAGCTATCATCCATATGTGGAGACCCTCCCTTTTGTGCTCCATAAGATCATCCAAGCTCCTCCATGTATTCTTATTGTGAGCTCAAATGGATCGTAATAGTTGGTCAAACTAGCCGTGCTCGTATCAGTCAGTTCTCCATCTATCCCCTTCTATTGCCTGAAAACCTGCTTCGTCCGAACTGTGTAGAGTTGCCCTATCAAATGATTTTTTTTGGCCAGCAAACATTGTTATCACTTCAAATAGCAGCCCTAGGAAATTCGTAAAAGACACCTAATGTTGGAATATGTTTTTCTTTTCAAGAGAATTTCAAGTACTATCAAAAGAGTCCACTTTCAGAGACACTGCAATACCTCAAAGTTATATGTACAATCTTTGTCCTGTTGCTGTTTCTTGTCGCATTAGTGAGAGACCAGTTTAAATAGCTGTTTGGAATGAGAATTCCCTCATTTTTAGGAGAACCATCAGGGTAGACATGTTAAGCGCAGAATTAGTAGCAGCAATGGAGTGTTACATATAGGTGTTCAACCCTTTCTGATTGTCAAAATTAGTCTTTCAGAGCTTCATTGTAGTTTTGCAAATTGAAATTTTGATAAGTTGACTGTTTTACTGCTTTAGATAGGTTAACGCTATATTTCTGAAAAATTTTGCTTCCTTGTGGCAAATTTTAACCAAATTGTTTTCATTTTATATTTGCAGCTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATT</genome_strand>
        <mrna_strand>AGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337369" ref_strand="+" ref_description="SGN-E337369 [cTOE-18-B16]">
      <seq>tttcaatgggagacaacagcgatacagccaccgcaccgtcgccggcgaaaatcgccgcccaggaagatgcgctactgaagcaattcttcgctgaggtcagtgaagttgagcgcgataatgaagttaacaggatcctttcatgtttcaagttgaatccatttgattatcttaacttgtcattcgattcatccattgatgaagtcaaaagacagtatcgtaagttatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="-" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="88636" stop="86825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88336" g_stop="88207" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87219" g_stop="87129" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="221" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89">
            <donor d_prob="0.817" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87039" g_stop="87033" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="228" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="-" ref_id="SGN-E337369" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88336" e_stop="88207"/>
          <exon e_start="87219" e_stop="87129"/>
          <exon e_start="87039" e_stop="87033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAGGTTCGCCTCTTTATCTCTATCTCGCTATCTACATATGGAAACTTTTATCATGTTAATCAATTGTAATTATAGTTCTTCATCGTTGCGAATTTGTTTGGCATTTAGTCGGTTTTTTTTGCATGTTCATATCTCCAATGAGCTTAGAGTAGTTTTATGCTAATTTGGACGGGTAATCTTAGCATGAATTTGGAAGAAAGGAAGCTTAAGGATAGTAAGTTTAGTAAATTACAGCTTGTTTGGATGGTTGTTACCTATTGTTTGTATCGCATTTGTGTTGATAGTTTAAATACAATGTTTGATTTGATCTCATTTACCTTTAGCCTTAAGCCTTTAGCCATTTAAAAGAAGACATTTTCCTAATCCGTTTCGAAGTTTGTTTTGGATTGATAATGTAAAAATTGCAGCCAAAAAGGGCCAGGATGTACAAATATCTGTCCACCTTTGAAGGAGTTGAAAAACTAATACAGGATAACACAGCTCTCCATTATCCCAACCTGGAAAAGGAATAGACTTCACTCGTTGTTTGCTTCCCCCGTCTTATAAAACCTTCCTCTTTGCACCAACTTCAGCTATAGTTTTTTGATCTGATAGTTCTGGATGTTGCATCCTTTCGAGGTAGAGTGTAAGGTAGAAAGTTTCATTTATATGTAGATTTCAAGACGGCTAACCTGTACGTCCATAAAATACTAGGGGTCAGTTATTCTATTTACGCAGGTTGGTGTTAACACCCTCGTCACTACTAGTTTGGTTATCTCTTTATTGTAATTGATGCTTAAGCTATCCTTTTTCTTTACAATATTATGTTTTGAGTGTGTGCATCTTGGAGTGTTTGCTTTTTGATATGGGGGGTTTGTTTGGTCAGAACAATATAGAATTCTATATCTATTTCTTGTTTCTTTTCTGAGAAGGGTATCTATTTCTTATCTGTACTTTATTTCTATCATGCTAAGTTGTCGTAATCTGGTTTTGAATTTAAAAACTGTGCAGGATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAGGTGTGAATTTGTCAATATGTTTTCCATTGACTCAAACCTTTCTCTTATTCTGCCAAATCATGTAATGTGTTCACTTGAATTACCTGCAGTTATCTT</genome_strand>
        <mrna_strand>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG.........................................................................................TTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581572" ref_strand="+" ref_description="SGN-E581572 [6736]">
      <seq>ctttggtggcaccagagttatcgacaaaattctgaaagaagaaaaatatgagacgtcccggcggcggacattccggcggtggacattacggtggtgctgattccggcgccgatgctacgtacaactccggccaccaaacgatgcaacatcaacagcagcagcagataaagtcagaacatcatcaacaatggagatgggaacgagagagcccgaaattacccacaaattctatgtctcccaacatgtatcctgaaggccaggggagtgaagcatctagatcatactaccagggccagaggactgatccaaggttggcattagagaatcaaggtggcaaggatcccagagcacagcctcgcgaagaagatatggatattggttatgaagataagcctgtacagcagactttggaaggtcttgaaaagaaattccttggatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgccgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgcgcccgggaagctaatcacagagatgaagtccttcgaagggagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97408" stop="103829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97708" g_stop="97975" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="504" r_length="249" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="103529" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="601" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E581572" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97708" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="103529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTGGCACCAGAATTATCGACAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTT-GATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTC</genome_strand>
        <mrna_strand>CTTTGGTGGCACCAGAGTTATCGACAAAATTCTG-AAAGAAGAAAAATATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGACATTACGGTGGTGCTGATTCCGGCGCCGATGCTACGTACAACTCCGGCCACCAAACGATG------CAACATCAACAG------CAGCAGCAGATAAAGTCAGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCCACAAATTCTATGTCTCCCAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCATACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGGATCCCAGAGCACAGCCTCGCGAAGAAGATATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAGAAATTCCTTGGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCCGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGCGCCCGGGAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708731" ref_strand="+" ref_description="SGN-E708731 [FA36CE03]">
      <seq>caatattctgtaaggaagaaaaaaatgagacgtcccggcggcggacattccggcggtgggcattacggtggtgctgatgccggcgccgatgctacgtataactccggccatcaaacgatgcaacatcaacatcaacagcaacaacagcagcagatcaagtcggaacatcatcaacaatggagatgggaacgagagagcccgaaattacctacaaattctatgtctccgaacatgtatcctgaaggccaggggagtgaagcatctagatcctactaccagggccagaggactgatccaaggttggcattagagaatcaaggtggcaagaatcctagagcactgcctcgtgaagaaggcatggatattggttatgaagataagcctgtacagcagactttggaaggtcttgaaaaaaaattccttgatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgctgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgtgcccggcaagctaatcacagagatgaagtccttcgaagggagtgtcatgccagaaaactacagtatgagcaagttgctttggacaactatcgacacagcaacatgagcactagcaatgctcgtggatatgtgggaaactctccagcaggagaacgacaagttgcctacaactctccagcaggagaacgacaagcagcctataatgctgatagttacgactcttacagggagaatgctcgatatattggcaacagcggaagagatcacggatatgaacctagagtacaatacccaggcggtcgcgtctatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97432" stop="104098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="97975" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="492" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="103798" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="858" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E708731" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="103798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACT</genome_strand>
        <mrna_strand>CAATATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACTACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701609" ref_strand="+" ref_description="SGN-E701609 [FA16BG12]">
      <seq>caaaattctgtaaggaagaaaaaaatgagacgtcccggcggcggacattccggcggtgggcattacggtggtgctgatgccggcgccgatgctacgtataactccggccatcaaacgatgcaacatcaacatcaacagcaacaacagcagcagatcaagtcggaacatcatcaacaatggagatgggaacgagagagcccgaaattacctacaaattctatgtctccgaacatgtatcctgaaggccaggggagtgaagcatctagatcctactaccagggccagaggactgatccaaggttggcattagagaatcaaggtggcaagaatcctagagcactgcctcgtgaagaaggcatggatattggttatgaagataagcctgtacagcagactttggaaggtcttgaaaaaaaattccttgatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgctgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgtgcccggcaagctaatcacagagatgaagtccttcgaagggagtgtcatgccagaaaactacagtatgagcaagttgctttggacaactatcgacacagcaacatgagcactagcaatgctcgtggatatgtgggaaactctccagcaggagaacgacaagttgcctacaactctccagcaggagaacgacaagcagcctataatgctgatagttacgactcttacagggagaatgctcgatatattggcaacagcgggaagagatcacggatatgaacctagagtacaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97432" stop="104075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="97975" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="492" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="103775" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="836" r_length="344" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E701609" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="103775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGC-GGAAGAGATCACGGATATGAACCTAGAGTACAATACC</genome_strand>
        <mrna_strand>CAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACTACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGGAAGAGATCACGGATATGAACCTAGAGTACAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581573" ref_strand="+" ref_description="SGN-E581573 [6736]">
      <seq>aagaagaaaaatatgagacgtcccggcggcggacattccggcggtggacattacggtggtgctgattccggcgccgatgctacgtacaactccggccaccaaacgatgcaacatcaacagcagcagcagataaagtcagaacatcatcaacaatggagatgggaacgagagagcccgaaattacccacaaattctatgtctcccaacatgtatcctgaaggccaggggagtgaagcatctagatcatactaccagggccagaggactgatccaaggttggcattagagaatcaaggtggcaaggatcccagagcacagcctcgcgaagaagatatggatattggttatgaagataagcctgtacagcagactttggaaggtcttgaaaagaaattccttgatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgccgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgcgcccggcaagctaatcacagagatgaagtccttcgaagggagtctcatgccagaaaacaacagtatgagcaagttgctttggacaactatcgacacagcaacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97444" stop="103890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97744" g_stop="97975" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="468" r_length="248" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="103590" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="626" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E581573" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97744" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="103590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAG</genome_strand>
        <mrna_strand>AAGAAGAAAAATATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGACATTACGGTGGTGCTGATTCCGGCGCCGATGCTACGTACAACTCCGGCCACCAAACGATG------CAACATCAACAG------CAGCAGCAGATAAAGTCAGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCCACAAATTCTATGTCTCCCAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCATACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGGATCCCAGAGCACAGCCTCGCGAAGAAGATATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAGAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCCGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGCGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTCTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560240" ref_strand="+" ref_description="SGN-E560240 [19863]">
      <seq>aaaaaatgagacgtcccggcggcggacattccggcggttggacattacggtggtgctgattccggcgccgatgctacgtacagctccggccaccaaacgatgcaacatcagcatcaacagcaacaacagcagcagataaagtcggaacatcatcaacaatggagatgggaacgagagagcccgaaattacccacaaattctatgtctcccaacatgtatcctgaaggccaggggagtgaagcatctagatcctactaccagggccagaggtctgatccaaggttggcattagagaatcaaggtgtcaaggatcccagagcacagcctcgtgaagaagacatggctattggttatgaagataagcctgtgcagcagactttggaaggtcttgaaaagaaattccttgatgatataatgaaactgaccaaggagcaaaatgatgcagaggatgccgaaaattctaggcatagggagcggataaatgcaatcaacacacaatatcaagaacagctagttgcccttcgcgcccggcaagctaatcacagagatgaagtccttcgaagggagtctcatgccagaaaacaacagtatgagcaagttgctttggaaaactatcgacacagcaacatgagcgctaacaatgctcgtggatatgtggcaactctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="97451" stop="103926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97751" g_stop="97975" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99904" g_stop="100151" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="474" r_length="248" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103433" g_stop="103626" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="667" r_length="193" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E560240" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97751" e_stop="97975"/>
          <exon e_start="99904" e_stop="100151"/>
          <exon e_start="103433" e_stop="103626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGG-TGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAGGTAATTTGTTGGATTTTCTAGTGTTTTTTGCTTATTTTTACTTGCTGTTTTGTAGATCAATTTATTAAAAGTTTCATTTTTTTAGATACCCTTTACTGATTTCCCCTGAAAACTAGGTTTTCTGTTTAGTTTCCTTTTGGTTGTGCTTGCTTACATTGCCGGTGCCAAGTCCGGATAATAGTTAGTTACTAAGATCTGATTATGAGTTATTGAATGGTAAGATGAATAAAGTGTGTTTGCTTGTGTGTTTAAAAAAAGATGAATAAAAATTTTGAATTGAAGAATGAAGGTTGTGATAGGCTGATAGCTAGCGTAAACTTGCGAATTTATGATGAATCCAACACGTTGGGGATTGAGGATTAGCTATAGTAGTAGTAGTTATTGGTTTAGTAGTATTAGTTTCTGATTCTTTGCTAGGCAATATTTTGTTTTGGAAATAATCCTTGCAATAATCATAACCACAAAAACTACTTTTTTGTTCCATAACTGTGGTTCAGGGCTAACTTGTGCACATCCCCATTAATTCCATGTGGTACCTACTATTTCTAATCAACAGAAATATATTGTAACTCTGTCCACCAAGGCTCGTATAAATGGGAAGAAATCAGTAGTGTTTTTGCCTCCTTTGGACTTTGAAGAACCTCAAAGGTCATGATTTTCAATCTTCTTTATTGTGGAAATCTTGCTTCCTCTTGGCAAAAGATCCACAAAACTGGGGCACCTATTTGAGATTAAGGTTTAGTTATTCTAATAACACTTGTATTAAGGTCGGTAATCTTTAGGAGCTTTTTTAAATTTGGTTAAAGACTTTTGTGCTAGTTTGCAGATGAGTGTGAGATTTTGGAAACATTTTGTTTTAAAGGTCCAAATTTGCCTTAAAAAGACTAGTTTTTGATGTTGTAACTGTAGCAGTGTACTTGTGGATCCATATAAGAATTTGTATGGGACTGCACCCGTTACTTCTGGCAGCTCAACTCTAATAAAGCTTATGCAATGACCACTCTAGGCAGACATTTCAGATGCTTCAACTACAAGCCAATAACATGAATATAAGAGTTCAACATTTGTCAGACGTACCTTTTTTTCAGTTGCATCAAGCATATTAATTCATACAGTTGCAACAAAATATATAGGGTCTAATTTATAGAGGAACACTAAGAAAATAAGAACCTTTAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTTAAACTATCTGATAATTTTTCAGTTGCAACAAGCATTTTAATTCATACAGTTGCAAAAAAATACATAGGGTCTAATTTATAAAGGGACACTAAGACAATAAGAACCTTTAAAATAAAGGAATATGTAACTTCAACTAGAAAATGAAGATCACTTCAAACTATCTGATAATTTTTTTCTTTTAAAATAATGGTGGTGTCGGGGCCATTTTGCGCAATTCGACTATTCAGTTGGGTACCTGCTACCTCTAATCAACGGTACCGGAGTAACTTTGTCCACAAAGTCTTAAGCAGATGGGAAGAAATCAACTAGTGCCTATTATCTCTACTGAGATTTAAATCTGTTTCTAAGGTTTGCAGACACTTTGACCACTAGGCGGTACCCTTGGGTGCTAGTTGAATCTTTATCTCCTAGGAAATTAGATTAGACAAAAATCTAATTTAAAGCATGACGTCAAAGTGTTTCAGAGTATTGCTGCTATTCATAAAACGGGTTTACTTCTTTCTTACCTTCCTATTTTGTTAATAATGCTGACTTATGAATGGTAGAAAGTGTCTGGAAGTATTGAATTTGCTCATTCTGATTAAAGGCAATATACTGTCCTAGTGATACATAGGTAGTTTTTATTAGGCGGTATCAGCATTTTTTTATTTTTGGAAAGTAGTGCTTGTCTTTCTATGTTTCAATTCATTCAACAGTGCCTTTCCTATAGGCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAGGTTAGTTCAGCTTACTTAAGTGCTTTAATAACATAGTGGATTCTTCATTCATGTCAAGTTCTAAAGCTTTTCATTTAAAAGGGTAATGCCACACTATGCATTATCTACATCTTTTTTAGGATATACTAGTGCTTACATACATGGAGAGACCCCCTTCCCTTCCAAGTTCTTCTGCCCAACCTTTGATTTCTAAAAATATCCATAGCTGTCAAGCCCGTGCAATTGCATGATTCCAACTGAGAGACACAAATATTCCCTTAAAATCTTCATATTTATCAATACAGAGCATTCTTGCAATTCCTCACAACTTATCTTCTCTTCAAGTTTCTTGGAACAGAAAATCAATACCTTACCTTAATATTTTGTCCAACCATCTTTAGATTAATGAGCAGTATCTTCTATAGTAAAACAGATCAAAGTATGACGTAAAAATATATCAGATCAAAGCCTAGTAAACCTGTTAAAGTGCCATATCCAAGGGCCTGTAGCCAAAAATACTTTGGAAACTGTGCTTGTATGTGCCTGGTAAGGCTTTACTCCTTACCTCATATTATATTTGATTCAGTTTGCTTGGTTGTGGAGTTTGGATGCTTAGTTCACTTGGATAATCTTATTATTGGTCAATTAGTTGTACATCAAGCTTGGAGCTTGCATGAAGTTTGTGACAGAGTTGACAATACATCACAACTCCTCCATCAAAATATACCGTAACTTCTAGTCGTGTTTGCTTAATGATCTCATCATCTCAGTCATTGTGATTCATATGATTTGTATATTATGTGTAGTATCAAATATTTTATCTATCACTGGGCAAACAGTTCAGAGCAAGGAAAGGCTGGTGTTAGCAGCTGCATTCAAAACACGGCATTAGGGCTGTTTGATGTTGCTATTACTCATAAAGACAGATTGTTAATGGCAATGGTTAGAACATCTTCAGATGAGTAAACAATAAAATGTTTTACCTGTAGATGAGTGAACGTTTCCTATGGACATCGTTACTGGAGTTGTCTTCCCTCAATGATTTTGAGCAATGTCTCTGTGCCCTCTTCCAATATTTTGATCAACTTTATTAAGCTGAATTGACTTGATAGGAGACTTGTTGTAGCTACAAACTTTTGGAGGTGGCCAGCATGCCCTCAATGCCGAAGAATACAATCTTACCTGTTATAAAAAAATAATATTTGAATATACCAAGTAGTCTGCAATATATGAATAGGATCAAAGGTTAAGCTTGTACTTCCAAGTTTCAGAAAAATTTAGGTAGTTTAGACTGTTTCAGTGTTCCTTTTATAATCTGTTCCCCGTCTTGCTTATATAGTAGGTACTGAAACTTTTATCCATGTTCCTGGGCTGCTTTCTGGTGCCCACCCTGCGTGGGTAGATCAGCAGTGAATATTTATGAGTACAGGAGATTACTGGTTTGACAGAATCGAAATCTGTAACTTTCTTGTTACACAATGTCTGTCTTATCAAGAGAACTTGTATACCCAAAGGCTTATCTTCACATTTTCTACTTCCTAAATATATGTATGTAACTGATGAAGCTTGGGGGACTGGGGAGGTTGAATAAAAAATTTTGTGATAGATTTTGCTGATGTTTTATGCATACTCAGCTATTTTGCTAATTAGCGTGGGACCTTCTTTTCTCTTCATATGTTGTATTAAAATTTTTGAGCCTTTCTTCTCAGTGGAAATGCATAATCCTTATACTTCCTCCCTGTTTATGGTGCAAAATTTTAATGTTTCAGCCAGTATTTCGTACCAGTAAAGATCTAACTTTAAATCAACTTAGGATTAGGACATACGTACTTACTGGTCAAGCTTTAGTATAATTGTGAACCTGATCTAAGTTCTGCCATTCAAAAGCATAAGGTGGAATTAATGTCAAAACTGTTCATTCATAAATACAAATTAAAGTATTTATGCCAAAAATTATCAAGATGCTTAGATCCGAGCTAGTTTACAAGACTAGATACCATTCTCTACTTATATTTAAAGATAAGGGAAAAAATTAACAAGAATTGCTACTATGCATGTCTTGACAGGGATGGTGACTAAAAGTGTAGATAGATTTTTTTCTTGAGTTCATTATGTCTCTTTAAACTTCCTCCATCAGAACTTCTATAGCAGCAACCTAGGATGTATATTGAAGAGCAAGCAGCACCTTACTAGATGGTATGTAACCTCGATGGAGGTTGACTTTCATTCTCTTCAAGTTTGTCAAACAGGATTTAGCTGATATAGAAACATTAAGTTAGAAATACTTAGAAAAGAAGAAAATACACGTGTGTCTTTATCTTCTTTTCCTGTCAGTATAAGTTAAATGGTTATGATTTAGGTGAGTTATAGTGTATCTAAAGATGTGGTCCAGTGGTCAGTTAAGTGGGTTGAGAACCACAAGGTCTCAGTTTCAAATTTTAGTGGAGGCAACAACACTGATTTCATCCCATCTGTTCAAGCATTGGTTTACCTCTGCTAGTGGGAGGTAGCAGGTATTCCATGGAACTGATCCAGATATGCAAAATCTGACTCAGACAGCATGGTATGAAGAAAATGAACTAGGTGAATTACGGGTTATCCTCATAAGTCATCACTCATCACCATGCATGACATTCCTTTAAATACTTCTAAACCCTGGCCAGACATTTGTCTCCTTCAGAATTCTCAGTTTTGCGACGTTGTTCTACTTGGGATGTGGAGTTAAGTTACAGTTTTATGTTGAATTAAGTTCAAACTGATAGCAAAAGTTGATGGGGAATAATTGCATGCAAAAACATTTTTGTTCTGTGATAAATATTCTTTTCCCTAGAGCCACTTTTAAAATGACGGGATACTTTTTCTGGTGAAAAGTAAACTCAAATGGAGAACCTGATACTTTTTTTTGTGAAAAGTATACTCAAATAGAGAACCAAAACATTACGAGAAGTAGATAGATGAAAGTACAGAAGATCTTTCCAGACATGAAACTGAAAATCAGCATGGCACTCACTACATCTATGGCTTATATAAGAATGCTAAGATTCCCAGTTTATGATGCTTCTCCTTTACTTTGTATTCATGTCATGTAACTATGTTATATTATTGTAAAGAATCTTGATCTTGAAATATTAAGTAATATGACTAAGGCAGTCACACATATATGGACAATGCAGTGCAAATCTTGCAGGATTTTCATCCTAGAAGCTCTCAATGTTTCTGTATGTGACATTGTGTGTTAACAACCTTCTAGTGGTACAGAATTCTTGTTTCTATGAGAGTAACATTTTTTGCTTATATTTCAGCGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCC</genome_strand>
        <mrna_strand>AAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTTGGACATTACGGTGGTGCTGATTCCGGCGCCGATGCTACGTACAGCTCCGGCCACCAAACGATGCAACATCAGCATCAACAGCAACAACAGCAGCAGATAAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCCACAAATTCTATGTCTCCCAACATGTATCCTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGTCTGATCCAAGGTTGGCATTAGAGAATCAAGGTGTCAAGGATCCCAGAGCACAGCCTCGTGAAGAAGACATGGCTATTGGTTATGAAGATAAGCCTGTGCAGCAGACTTTGGAAGGTCTTGAAAAGAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCCGAAAATTCTAGGCATAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGCGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTCTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGAAAACTATCGACACAGCAACATGAGCGCTAACAATGCTCGTGGATATGT-GGCAACTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733497" ref_strand="+" ref_description="SGN-E733497 [LB10AG01]">
      <seq>catagatgaagtccttcgaagggagtgtcatgccagaaaactacagtatgagcaagttgctttggacaactatcgacacagcaacatgagcactagcaatgctcgtggatatgtgggaaactctccagcaggagaacgacaagttgcctacaactctccagcaggagaacgacaagcagcctataatgctgatagttacgactcttacagggagaatgctcgatatattggcaacagcggaagagatcacggatatgaacctagagtacaatacccaggcggtcgcgtctatgaaactggttcacgctattattgaataactgcttagaatagtattgaatctttcgtttagtttgctttgactaggtggtcgcgtctatgacactggttcacgctactcgtctttatagcttttatcagattggataaaagagtcacatatgtactttacttttttctgaatgattcatgatcttggcatggactagtgatgaagtttgatctgttactgttcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="103201" stop="104320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103501" g_stop="104019" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E733497" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103501" e_stop="104019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</genome_strand>
        <mrna_strand>CATAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACTACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594667" ref_strand="+" ref_description="SGN-E594667 [37923]">
      <seq>cgacacagcaacatgagcgctaataatgctcgtggatatgtggcaaactctccagcaggggagcgacaagttgcctataactctccagcaggagaacggcaagcagcctataatgctgatagttatgattcttacagggagaatgctcgatatcttggcaacagtggaagggatcacggatatgaacctagagtacaatacccaggcggtcgcgtctatgaaactggttcacgctattattgaataactggttagaatagtattgaatctttcgtttagtttgcttggactaagtggtcgcgtctacaacactggttcacgctactcgtctttatagcttgtatcagattggataacaagagtcacatatgtatttaactttgtctgaatgattcatgattttggcatggactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0089M02-soffi/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0089M02.2" temp_strand="+" temp_description="C11HBa0089M02.2  AC212433.2 htgs_phase:3 submitted_to_sgn_as:gi|166159191|gb|AC212433.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0089M02, complete sequence">
        <position start="103274" stop="104289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103574" g_stop="103989" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0089M02.2" gen_strand="+" ref_id="SGN-E594667" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0089M02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103574" e_stop="103989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAA-AAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGT</genome_strand>
        <mrna_strand>CGACACAGCAACATGAGCGCTAATAATGCTCGTGGATATGTGGCAAACTCTCCAGCAGGGGAGCGACAAGTTGCCTATAACTCTCCAGCAGGAGAACGGCAAGCAGCCTATAATGCTGATAGTTATGATTCTTACAGGGAGAATGCTCGATATCTTGGCAACAGTGGAAGGGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGGTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTGGACTAAGTGGTCGCGTCTACAACACTGGTTCACGCTACTCGTCTTTATAGCTTGTATCAGATTGGATAACAAGAGTCACATATGTA-TTTAACTTTGTCTGAATGATTCATGATTTTGGCATGGACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>144</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6815" PGL_stop="11998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6815" e_stop="7062"/>
            <exon e_start="8833" e_stop="9091"/>
            <exon e_start="10674" e_stop="10726"/>
            <exon e_start="10825" e_stop="10892"/>
            <exon e_start="11141" e_stop="11230"/>
            <exon e_start="11353" e_stop="11422"/>
            <exon e_start="11507" e_stop="11998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6815" e_stop="7062" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7063" i_stop="8832" i_length="1770"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8833" e_stop="9091" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.868">
            <gDNA_intron_boundary i_start="9092" i_stop="10673" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10674" e_stop="10726" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10727" i_stop="10824" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10825" e_stop="10892" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.910" acc_prob="0.981">
            <gDNA_intron_boundary i_start="10893" i_stop="11140" i_length="248"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11141" e_stop="11230" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.799" acc_prob="0.953">
            <gDNA_intron_boundary i_start="11231" i_stop="11352" i_length="122"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11353" e_stop="11422" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="11423" i_stop="11506" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="0.996">
            <gDNA_exon_boundary e_start="11507" e_stop="11998" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6815" stop="7062"/>
              <exon start="8833" stop="9091"/>
              <exon start="10674" stop="10702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6852" stop="7062"/>
              <exon start="8833" stop="9091"/>
              <exon start="10674" stop="10726"/>
              <exon start="10825" stop="10860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6940" stop="7062"/>
              <exon start="8833" stop="9091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10713" stop="10726"/>
              <exon start="10825" stop="10892"/>
              <exon start="11141" stop="11230"/>
              <exon start="11353" stop="11422"/>
              <exon start="11507" stop="11998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10715" stop="10726"/>
              <exon start="10825" stop="10892"/>
              <exon start="11141" stop="11230"/>
              <exon start="11353" stop="11422"/>
              <exon start="11507" stop="11968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG : GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG : GTTCCTAGTCTTTGAAAATATGGAAAAAGGAAGTCTGAAGGAACACCTTTCTG : ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA : GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA : CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG : AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</gDNA_template>
            <first_frame> L  I  V  E  P  K  K  V  S  I  Y  L  R  *  R  K  H  I  F  D  Y  *  S  Q  K  Q  Q  W  V  I  I  I  I  S  *  P  T  H  L  S  L  F  V  L  V  V  K  V  S  S  F  S  C  L  F  L  A  E  F  V  N  G  T  F  D  L  Q  N  *  A  S  Y  S  C  L  G  A  F  Q  I  S  F  R :   S  N  I  L  G  E  T  L  L  *  *  R  Y  K  E  S  N  *  W  F  *  E  N  C  L  Q  L  F  Q  N  S  C  L  Q  S  K  V  S  K  W  P  C  C  V  C  E  R  S  P  R  F  R  R  *  G  *  Y  G  L  L  Q  G  G  T  V  T  R  S  L  A  S  S  T  Y  C  C  T  *  W  V  L  L  R  P  *  E  :  V  P  S  L  *  K  Y  G  K  R  K  S  E  G  T  P  F  * :   P  S  D  D  S  T  K  L  E  N  K  T  A  D  S  S  W  H  R  C  C  F   : R  I  S  P  L  L  L  *  S  A  D  V  P  R  F  S  Q  F  K  Y  H  H  A  G  R  E  L  H  S  *   : T  L  *  C  *  P  P  L  F  C  R  E  Q  Q  S  T  S  E  V  *  M  L  Q  R :   M  W  *  *  D  L  Q  T  D  N  L  P  A  W  F  A  D  P  R  V  S  H  R  S  I  L  R  R  R  R  C  *  L  S  S  M  G  S  R  F  S  L  P  K  K  I  H  S  P  D  D  *  S  *  S  R  R  Q  L  R  F  Q  R  A  *  R  S  F  G  S  C  K  N  V  C  T  I  Y  P  *  A  Y  N  K  D  P  S  N  I  V  V  S  P  K  E  T  G  Q  D  S  S  S  L  L  M  T  *  V  M  S  C  S  Q  I  *  I  I  D  C  V  S  R  H  F  F  C  K  A  M  L  L  G  L  F  K  S  K  S  P  H  N  L  V  C  K  *  S  A  A  F  *  H  *  L  *  N  *  T  S  S  *  K  Q   </first_frame>
            <second_frame>  *  *  *  S  Q  K  K  F  Q  F  T  *  D  K  E  S  I  Y  S  I  I  K  V  R  S  N  N  G  S  S  S  S  S  V  N  R  P  T  C  H  S  L  Y  *  L  *  K  F  L  L  F  L  V  F  F  L  Q  N  L  S  M  E  P  L  I  F  K  I  R  L  L  I  L  A  W  V  H  F  R  S  H  S   : G  P  I  S  L  V  K  H  F  S  N  K  D  I  K  K  A  T  D  G  F  R  R  I  V  Y  N  S  S  K  I  V  A  Y  R  A  K  F  Q  N  G  H  A  A  F  V  K  E  V  R  G  F  E  D  E  D  D  T  A  F  Y  R  E  V  Q  L  L  G  R  L  H  H  R  H  I  A  A  L  N  G  F  S  C  G  P  K  R :   F  L  V  F  E  N  M  E  K  G  S  L  K  E  H  L  S   : D  P  L  M  T  P  L  N  W  R  I  R  L  Q  I  A  V  G  I  A  A  A  L  :  E  Y  L  H  F  F  C  D  P  P  M  Y  H  V  S  V  S  S  S  T  I  M  L  D  E  N  F  T  A  K  :  L  C  D  V  S  L  L  C  S  V  E  N  N  N  P  L  P  K  S  K  C  S  K   : E  C  G  N  E  I  C  K  Q  T  I  F  Q  L  G  L  L  I  L  E  L  V  T  G  Q  S  S  E  E  G  G  V  D  L  V  Q  W  V  Q  D  S  R  F  R  R  R  S  I  H  Q  M  I  D  P  D  L  G  D  S  Y  D  F  K  E  L  K  G  L  L  A  V  A  K  M  C  V  Q  S  I  H  K  P  T  I  K  T  P  Q  I  L  W  Y  L  Q  K  K  L  G  R  T  P  V  V  C  *  *  L  E  S  C  H  V  H  R  Y  R  S  *  I  V  *  V  D  I  F  F  V  K  L  C  Y  S  D  S  S  N  R  R  V  H  T  T  *  S  V  S  S  L  L  R  F  D  I  D  Y  E  I  R  P  L  H  K  N  K  </second_frame>
            <third_frame>   N  S  R  A  K  K  S  F  N  L  L  E  I  K  K  A  Y  I  R  L  L  K  S  E  A  T  M  G  H  H  H  H  Q  L  T  D  P  L  V  T  L  C  T  S  C  K  S  F  F  F  F  L  S  F  S  C  R  I  C  Q  W  N  L  *  S  S  K  L  G  F  L  F  L  L  G  C  I  S  D  L  I  Q  :  V  Q  Y  P  W  *  N  T  S  L  I  K  I  *  R  K  Q  L  M  V  L  G  E  L  F  T  T  L  P  K  *  L  L  T  E  Q  S  F  K  M  A  M  L  R  L  *  K  K  S  E  V  S  K  M  R  M  I  R  P  S  T  G  R  Y  S  Y  S  V  A  C  I  I  D  I  L  L  H  L  M  G  S  L  A  A  L  R   : G  S  *  S  L  K  I  W  K  K  E  V  *  R  N  T  F  L  :  T  L  *  *  L  H  *  T  G  E  *  D  C  R  *  Q  L  A  S  L  L  L  * :   N  I  S  T  S  F  V  I  R  R  C  T  T  F  Q  S  V  Q  V  P  S  C  W  T  R  T  S  Q  L  N :   S  V  M  L  A  S  F  V  L  S  R  T  T  I  H  F  R  S  L  N  A  P  K  :  N  V  V  M  R  S  A  N  R  Q  S  S  S  L  V  C  *  S  S  S  *  S  P  V  N  P  Q  K  K  E  V  L  T  *  F  N  G  F  K  I  L  A  S  E  E  D  P  F  T  R  *  L  I  L  I  S  E  T  A  T  I  S  K  S  L  K  V  F  W  Q  L  Q  K  C  V  Y  N  L  S  I  S  L  Q  *  R  P  L  K  Y  C  G  I  S  K  R  N  W  A  G  L  Q  *  F  A  D  D  L  S  H  V  M  F  T  D  I  D  H  R  L  C  E  *  T  F  F  L  *  S  Y  V  T  R  T  L  Q  I  E  E  S  T  Q  L  S  L  *  V  V  C  C  V  L  T  L  I  M  K  L  D  L  F  I  K  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6954" stop="7062"/>
                    <exon start="8833" stop="9091"/>
                    <exon start="10674" stop="10726"/>
                    <exon start="10825" stop="10892"/>
                    <exon start="11141" stop="11230"/>
                    <exon start="11353" stop="11422"/>
                    <exon start="11507" stop="11820"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLFLVFFLQNLSMEPLIFKIRLLILAWVHFRSHSGPISLVKHFSNKDIKKATDGFRRIVYNSSKIVAYRAKFQNGHAAFVKEVRGFEDEDDTAFYREVQLLGRLHHRHIAALNGFSCGPKRFLVFENMEKGSLKEHLSDPLMTPLNWRIRLQIAVGIAAALEYLHFFCDPPMYHVSVSSSTIMLDENFTAKLCDVSLLCSVENNNPLPKSKCSKECGNEICKQTIFQLGLLILELVTGQSSEEGGVDLVQWVQDSRFRRRSIHQMIDPDLGDSYDFKELKGLLAVAKMCVQSIHKPTIKTPQILWYLQKKLGRTPVVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15586" PGL_stop="12272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15544" e_stop="15268"/>
            <exon e_start="14321" e_stop="14156"/>
            <exon e_start="13827" e_stop="13689"/>
            <exon e_start="13493" e_stop="13217"/>
            <exon e_start="13048" e_stop="12850"/>
            <exon e_start="12735" e_stop="12272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="15544" e_stop="15268" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15267" i_stop="14322" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14321" e_stop="14156" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14155" i_stop="13828" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13827" e_stop="13689" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="13688" i_stop="13494" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13493" e_stop="13217" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13048" e_stop="12850" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12735" e_stop="12272" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15544" stop="15268"/>
              <exon start="14321" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="13016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15268"/>
              <exon start="14321" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="13012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15268"/>
              <exon start="14321" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15464" stop="15268"/>
              <exon start="14321" stop="14217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15463" stop="15268"/>
              <exon start="14321" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="13038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15463" stop="15268"/>
              <exon start="14321" stop="14156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15462" stop="15268"/>
              <exon start="14321" stop="14156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14202" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14181" stop="14156"/>
              <exon start="13827" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="12922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13777" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13734" stop="13689"/>
              <exon start="13493" stop="13217"/>
              <exon start="13048" stop="12905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13443" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13430" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13427" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13004" stop="12850"/>
              <exon start="12735" stop="12343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12990" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12924" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12908" stop="12850"/>
              <exon start="12735" stop="12274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12882" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12863" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG : TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG : GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG : CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K   : V  *  G  A  S  S  S  L  *  G  L  E  *  L  T  E  A  *  D  L  *  S  V  W  R  R  S  T  E  R  R  N  G  W  W  W  W  H  T  *  S  I  *  P  L  *  F  L  L  *  W  K  S  F  W  R :   W  W  S  *  R  T  K  R  E  E  G  *  R  C  S  A  S  I  E  G  V  A  *  G  P  I  Q  W  D  D  Q  E  T  I  A  F  A  Q  C  Y  L  L  E  V  *  W  :  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </first_frame>
            <second_frame>  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  :  F  K  E  L  A  Q  A  Y  E  V  L  S  D  S  Q  K  R  E  I  Y  D  Q  Y  G  E  E  A  L  K  E  G  M  G  G  G  G  G  T  H  D  P  F  D  L  F  N  S  F  F  S  G  S  P  F  G   : G  G  G  R  R  G  Q  R  E  R  R  G  D  D  V  V  H  P  L  K  V  S  L  E  D  L  Y  N  G  M  T  K  K  L  S  L  S  R  N  V  I  C  S  K  C  S  G :   K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </second_frame>
            <third_frame>   I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  S :   L  R  S  *  L  K  L  M  R  S  *  V  T  H  R  S  V  R  F  M  I  S  M  E  K  K  H  *  K  K  E  W  V  V  V  V  A  H  M  I  H  L  T  S  L  I  P  S  L  V  E  V  L  L  E  :  V  V  V  V  E  D  K  E  R  G  G  V  T  M  *  C  I  H  *  R  C  R  L  R  T  Y  T  M  G  *  P  R  N  Y  R  F  R  A  M  L  F  A  R  S  V  V   : A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="15268"/>
                    <exon start="14321" stop="14156"/>
                    <exon start="13827" stop="13689"/>
                    <exon start="13493" stop="13217"/>
                    <exon start="13048" stop="12850"/>
                    <exon start="12735" stop="12413"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELAQAYEVLSDSQKREIYDQYGEEALKEGMGGGGGTHDPFDLFNSFFSGSPFGGGGRRGQRERRGDDVVHPLKVSLEDLYNGMTKKLSLSRNVICSKCSGKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13594" e_stop="13217"/>
            <exon e_start="13048" e_stop="12850"/>
            <exon e_start="12735" e_stop="12272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13594" e_stop="13217" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13216" i_stop="13049" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13048" e_stop="12850" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="12849" i_stop="12736" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12735" e_stop="12272" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13594" stop="13241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13443" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13430" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13427" stop="13217"/>
              <exon start="13048" stop="12850"/>
              <exon start="12735" stop="12697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13004" stop="12850"/>
              <exon start="12735" stop="12343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606451" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12990" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12924" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12908" stop="12850"/>
              <exon start="12735" stop="12274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12893" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12882" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12863" stop="12850"/>
              <exon start="12735" stop="12272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> G  D  E  R  I  S  *  Y  R  E  V  R  F  Q  C  K  C  S  N  V  L  L  R  C  I  V  L  V  C  F  C  N  C  S  K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </first_frame>
            <second_frame>  E  M  K  G  S  P  D  I  E  K  *  D  F  N  A  S  A  Q  M  F  S  Y  V  V  L  Y  W  F  V  S  V  T  A  A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </second_frame>
            <third_frame>   R  *  K  D  L  L  I  *  R  S  E  I  S  M  Q  V  L  K  C  S  L  T  L  Y  C  I  G  L  F  L  *  L  Q  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13573" stop="13217"/>
                    <exon start="13048" stop="12850"/>
                    <exon start="12735" stop="12413"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YREVRFQCKCSNVLLRCIVLVCFCNCSKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15586" e_stop="15204"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="15586" e_stop="15204" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15586" stop="15204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</gDNA_template>
            <first_frame> K  K  E  N  S  R  A  F  S  T  I  L  N  F  S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K  G  N  L  F  V  Y  F  *  R  K  V  K  S  L  F  *  F  G  S  F  F   </first_frame>
            <second_frame>  R  K  R  I  L  E  H  S  P  L  F  S  I  S  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  V  I  F  L  F  I  F  E  E  R  *  S  L  C  S  N  L  G  V  F  F  </second_frame>
            <third_frame>   E  R  E  F  *  S  I  L  H  Y  S  Q  F  L  I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  R  *  S  F  C  L  F  L  K  K  G  E  V  F  V  L  I  W  E  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15531" stop="15235"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKVIFLFIFEER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="19321" PGL_stop="27776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19321" e_stop="19768"/>
            <exon e_start="21354" e_stop="21469"/>
            <exon e_start="21931" e_stop="22185"/>
            <exon e_start="24056" e_stop="24283"/>
            <exon e_start="24867" e_stop="24980"/>
            <exon e_start="26166" e_stop="26688"/>
            <exon e_start="27245" e_stop="27776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.922"/>
          <exon-intron don_prob="0.860" acc_prob="0.977" e_score="0.974"/>
          <exon-intron don_prob="0.954" acc_prob="0.912" e_score="0.980"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.953"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.943"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="19321" e_stop="19768" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="19769" i_stop="21353" i_length="1585"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="21354" e_stop="21469" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.860" acc_prob="0.977">
            <gDNA_intron_boundary i_start="21470" i_stop="21930" i_length="461"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="21931" e_stop="22185" e_length="255"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.912">
            <gDNA_intron_boundary i_start="22186" i_stop="24055" i_length="1870"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="24056" e_stop="24283" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="24284" i_stop="24866" i_length="583"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24867" e_stop="24980" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24981" i_stop="26165" i_length="1185"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="26166" e_stop="26688" e_length="523"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26689" i_stop="27244" i_length="556"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="27245" e_stop="27776" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19321" stop="19768"/>
              <exon start="21354" stop="21469"/>
              <exon start="21931" stop="22076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19601" stop="19768"/>
              <exon start="21354" stop="21469"/>
              <exon start="21931" stop="22185"/>
              <exon start="24056" stop="24158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19621" stop="19768"/>
              <exon start="21354" stop="21469"/>
              <exon start="21931" stop="22185"/>
              <exon start="24056" stop="24180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19644" stop="19768"/>
              <exon start="21354" stop="21469"/>
              <exon start="21931" stop="22185"/>
              <exon start="24056" stop="24119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21977" stop="22185"/>
              <exon start="24056" stop="24269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24239" stop="24283"/>
              <exon start="24867" stop="24980"/>
              <exon start="26166" stop="26688"/>
              <exon start="27245" stop="27390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24867" stop="24980"/>
              <exon start="26166" stop="26656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24867" stop="24980"/>
              <exon start="26166" stop="26560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27245" stop="27776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATTTTCGAAAAATTACAAAATATCGTGTTTTTTCTTCAATATTATTTACCCAAGTTCCAAAAATTCCAATTTGCTTACCAGTTTTCTGTTGGATGAGGAAATCCCGTGATAGACTCTTGGTTGCTTGCTCTGAAAACGACGTTACGCTACCGTCCCTGACCACCCTAAAACGGCACCGTTTAACCCCACCCCCACCCCCACCTCAGCATTAGCTGGCACCACCCCTCACACTTTGCTGCTTAGCTCAAAACTCATTACTCCTCCTTATAGTAGTAGTGCTACTACTTGCCACTTTTTTTTTTTTTTTTTTTGGGGGATAGATTATAGAAATTCACACTTGGGGTTGCAAGATTGTTCAAGATGAGAAATGGGTTGACTTCAATTTTGAATTTTAGTTGACTTGTTGGTAGATCGATCTGTTTCAACCAAACGGGAAGAAACGAAG : GTGCAAGTGGGTAAAGCCAAAGCTAGTATAGCATGGGTGTCTCTGGCAAATGGATTAGAGCACTGGTTGGCTTAAAGAAGTCAGAAAAGTCTCATTCTTCGGAAAAAGAGGAAAAT : AAATCTGGAGGGACTGGGAAGTTTTGGCACCGGAGAAAACACTCTGTTGAGATCGATTCCAACCTACTTCAAAAGGAGCTAACTTATAATGATGCTGGTGCTGGATCAGTTGAAGATATAAGCAGCACATCAGCTCCATTTGCTTCCAGCTCCCCTTCAAGTTCACATCAATTGCATCATGCCCCTCTAGTTAAGCAAAATATGAGAGAGGAATTGGCAGCTATACGCATCCAAACAGCTTTTAGAGGATTTCTG : GCAAGGCGAGCTCTTCGGGCTTTAAAAGGATTGGTGAGACTACAAGCCCTTGTCAGGGGTCATGCGGTGAGAAAGCAAGCTGCGATTACCCTCCGTTGCATGCAAGCTTTGGTGAGAGTTCAGGCACGTGTCCGAGCAAGACGTGTTCGCATGTCACTGGAAAGTCAAACTGAACAGCAGAAGGTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA : GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG : TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG : GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</gDNA_template>
            <first_frame> I  I  F  E  K  L  Q  N  I  V  F  F  L  Q  Y  Y  L  P  K  F  Q  K  F  Q  F  A  Y  Q  F  S  V  G  *  G  N  P  V  I  D  S  W  L  L  A  L  K  T  T  L  R  Y  R  P  *  P  P  *  N  G  T  V  *  P  H  P  H  P  H  L  S  I  S  W  H  H  P  S  H  F  A  A  *  L  K  T  H  Y  S  S  L  *  *  *  C  Y  Y  L  P  L  F  F  F  F  F  L  G  D  R  L  *  K  F  T  L  G  V  A  R  L  F  K  M  R  N  G  L  T  S  I  L  N  F  S  *  L  V  G  R  S  I  C  F  N  Q  T  G  R  N  E   : G  A  S  G  *  S  Q  S  *  Y  S  M  G  V  S  G  K  W  I  R  A  L  V  G  L  K  K  S  E  K  S  H  S  S  E  K  E  E  N  :  K  S  G  G  T  G  K  F  W  H  R  R  K  H  S  V  E  I  D  S  N  L  L  Q  K  E  L  T  Y  N  D  A  G  A  G  S  V  E  D  I  S  S  T  S  A  P  F  A  S  S  S  P  S  S  S  H  Q  L  H  H  A  P  L  V  K  Q  N  M  R  E  E  L  A  A  I  R  I  Q  T  A  F  R  G  F  L  :  A  R  R  A  L  R  A  L  K  G  L  V  R  L  Q  A  L  V  R  G  H  A  V  R  K  Q  A  A  I  T  L  R  C  M  Q  A  L  V  R  V  Q  A  R  V  R  A  R  R  V  R  M  S  L  E  S  Q  T  E  Q  Q  K  V  E  Q  Q  L  E  H  D  A  R  V  R  E  I  E  :  E  G  W  C  D  S  V  G  S  V  E  Q  I  Q  E  K  L  L  K  R  Q  E  A  A  A  K  R  E  R  A  M  A  Y  A  L  A  H  Q  :  W  Q  A  G  S  R  Q  Q  A  T  L  S  G  F  E  P  D  K  S  S  W  G  W  N  W  L  E  R  W  M  A  V  R  P  W  E  N  R  F  L  D  L  N  V  R  D  G  V  M  P  N  E  N  E  S  A  E  P  V  N  G  M  K  N  Q  V  K  V  A  G  K  K  P  A  T  T  T  L  S  N  D  R  V  G  P  S  H  S  S  S  N  S  K  S  N  E  K  A  A  A  S  L  S  D  G  C  S  S  S  P  N  V  S  A  S  T  Q  E  T  P  A  A  L  V  N  K  P  K  S  K  P  N  R  E  D  L  V  E  E  A  S  S  K  P  V  L  G  S  R  S  H  S  N  P  K  E  R  S  T  P  S  D  K  Q  G  K  Q  R  L  S  L  P  G  S   : G  L  A  P  Q  T  A  R  Q  P  S  R  T  I  K  R  T  S  S  T  Q  K  P  L  K  E  K  S  K  L  N  E  T  D  T  K  S  T  A  T  V  S  Q  Q  A  A  D  *  F  L  G  T  R  *  R  S  R  S  Q  N  Q  V  S  P  L  L  V  N  T  G  N  L  L  K  G  E  *  W  Y  V  V  H  G  R  V  K  R  R  *  A  C  C  H  L  L  N  N  I  F  A  F  V  S  I  L  V  I  I  R  V  I  Y  I  I  A  R  C  F  L  Y  P  S  S  L  P  V  *  K  R  G  *  I  C  F  L  C  H  F  S  *  A  E  N  W  G  I  W  *  V  *  L  P  I  S  L  L  C  V  V  Q  D  L  N  V  G  F  I  H  *  S  R  D  C  R  P  Y  C   </first_frame>
            <second_frame>  *  F  S  K  N  Y  K  I  S  C  F  F  F  N  I  I  Y  P  S  S  K  N  S  N  L  L  T  S  F  L  L  D  E  E  I  P  *  *  T  L  G  C  L  L  *  K  R  R  Y  A  T  V  P  D  H  P  K  T  A  P  F  N  P  T  P  T  P  T  S  A  L  A  G  T  T  P  H  T  L  L  L  S  S  K  L  I  T  P  P  Y  S  S  S  A  T  T  C  H  F  F  F  F  F  F  W  G  I  D  Y  R  N  S  H  L  G  L  Q  D  C  S  R  *  E  M  G  *  L  Q  F  *  I  L  V  D  L  L  V  D  R  S  V  S  T  K  R  E  E  T  K  :  V  Q  V  G  K  A  K  A  S  I  A  W  V  S  L  A  N  G  L  E  H  W  L  A  *  R  S  Q  K  S  L  I  L  R  K  K  R  K  I :   N  L  E  G  L  G  S  F  G  T  G  E  N  T  L  L  R  S  I  P  T  Y  F  K  R  S  *  L  I  M  M  L  V  L  D  Q  L  K  I  *  A  A  H  Q  L  H  L  L  P  A  P  L  Q  V  H  I  N  C  I  M  P  L  *  L  S  K  I  *  E  R  N  W  Q  L  Y  A  S  K  Q  L  L  E  D  F  W :   Q  G  E  L  F  G  L  *  K  D  W  *  D  Y  K  P  L  S  G  V  M  R  *  E  S  K  L  R  L  P  S  V  A  C  K  L  W  *  E  F  R  H  V  S  E  Q  D  V  F  A  C  H  W  K  V  K  L  N  S  R  R  L  N  N  N  *  N  M  T  L  V  Y  E  R  S  K :   R  A  G  V  T  V  L  D  L  L  S  K  F  K  K  S  C  *  R  D  K  R  Q  L  L  S  V  K  E  Q  W  P  M  L  *  L  T  S :   G  R  Q  D  P  G  S  R  L  H  F  L  G  L  N  Q  I  K  A  A  G  V  G  T  G  *  R  D  G  W  Q  Y  A  H  G  K  I  V  F  *  T  L  M  S  E  M  E  S  C  L  M  K  M  N  Q  P  N  L  *  T  G  *  R  T  R  *  K  L  L  G  R  N  Q  Q  L  Q  L  F  Q  M  I  E  W  V  H  L  I  Q  A  V  T  Q  N  Q  M  K  R  Q  Q  H  R  S  L  M  V  A  V  L  P  Q  M  C  Q  Q  A  H  K  K  H  L  Q  H  *  L  T  N  L  S  P  N  Q  I  V  K  I  *  L  R  K  L  V  Q  N  P  S  L  V  L  D  H  T  A  I  L  R  R  D  L  L  P  L  I  N  K  E  N  R  D  C  L  C  L  V  A  :  V  L  H  L  K  Q  R  D  N  Q  A  E  P  S  K  G  H  L  V  R  R  S  L  *  R  R  S  P  N  *  T  K  L  I  P  S  L  Q  Q  L  F  H  N  R  L  L  I  S  F  *  V  L  V  E  D  P  D  L  R  T  K  C  H  P  C  L  *  I  Q  G  T  F  L  K  G  S  D  G  M  L  S  T  A  E  L  K  G  D  R  L  A  A  I  S  *  I  T  S  S  H  L  F  Q  F  L  S  *  F  V  *  F  I  *  *  R  V  V  F  F  T  P  P  P  S  Q  C  K  K  E  D  E  F  A  F  C  A  T  F  L  E  L  K  T  G  E  F  G  E  F  D  C  Q  F  L  C  C  V  L  Y  K  I  *  M  *  D  S  F  I  N  L  E  I  V  D  H  I  V  </second_frame>
            <third_frame>   N  F  R  K  I  T  K  Y  R  V  F  S  S  I  L  F  T  Q  V  P  K  I  P  I  C  L  P  V  F  C  W  M  R  K  S  R  D  R  L  L  V  A  C  S  E  N  D  V  T  L  P  S  L  T  T  L  K  R  H  R  L  T  P  P  P  P  P  P  Q  H  *  L  A  P  P  L  T  L  C  C  L  A  Q  N  S  L  L  L  L  I  V  V  V  L  L  L  A  T  F  F  F  F  F  F  G  G  *  I  I  E  I  H  T  W  G  C  K  I  V  Q  D  E  K  W  V  D  F  N  F  E  F  *  L  T  C  W  *  I  D  L  F  Q  P  N  G  K  K  R  R :   C  K  W  V  K  P  K  L  V  *  H  G  C  L  W  Q  M  D  *  S  T  G  W  L  K  E  V  R  K  V  S  F  F  G  K  R  G  K   : *  I  W  R  D  W  E  V  L  A  P  E  K  T  L  C  *  D  R  F  Q  P  T  S  K  G  A  N  L  *  *  C  W  C  W  I  S  *  R  Y  K  Q  H  I  S  S  I  C  F  Q  L  P  F  K  F  T  S  I  A  S  C  P  S  S  *  A  K  Y  E  R  G  I  G  S  Y  T  H  P  N  S  F  *  R  I  S   : G  K  A  S  S  S  G  F  K  R  I  G  E  T  T  S  P  C  Q  G  S  C  G  E  K  A  S  C  D  Y  P  P  L  H  A  S  F  G  E  S  S  G  T  C  P  S  K  T  C  S  H  V  T  G  K  S  N  *  T  A  E  G  *  T  T  I  R  T  *  R  S  C  T  R  D  R   : R  G  L  V  *  Q  C  W  I  C  *  A  N  S  R  K  V  A  K  E  T  R  G  S  C  *  A  *  K  S  N  G  L  C  F  S  S  P   : V  A  G  R  I  Q  A  A  G  Y  T  F  W  V  *  T  R  *  K  Q  L  G  L  E  L  V  R  E  M  D  G  S  T  P  M  G  K  S  F  S  R  P  *  C  Q  R  W  S  H  A  *  *  K  *  I  S  R  T  C  K  R  D  E  E  P  G  K  S  C  W  E  E  T  S  N  Y  N  S  F  K  *  *  S  G  S  I  S  F  K  Q  *  L  K  I  K  *  K  G  S  S  I  A  L  *  W  L  Q  F  F  P  K  C  V  S  K  H  T  R  N  T  C  S  I  S  *  Q  T  *  V  Q  T  K  S  *  R  F  S  *  G  S  *  F  K  T  R  P  W  F  *  I  T  Q  Q  S  *  G  E  I  Y  S  L  *  *  T  R  K  T  E  I  V  S  A  W  *  R :   S  C  T  S  N  S  E  T  T  K  Q  N  H  Q  K  D  I  *  Y  A  E  A  F  E  G  E  V  Q  I  K  R  N  *  Y  Q  V  Y  S  N  C  F  T  T  G  C  *  L  V  F  R  Y  S  L  K  I  P  I  S  E  P  S  V  T  L  A  C  K  Y  R  E  P  S  *  R  G  V  M  V  C  C  P  R  Q  S  *  K  E  I  G  L  L  P  S  P  E  *  H  L  R  I  C  F  N  S  C  H  N  S  C  N  L  Y  N  S  A  L  F  S  L  P  L  L  P  P  S  V  K  K  R  M  N  L  L  F  V  P  L  F  L  S  *  K  L  G  N  L  V  S  L  I  A  N  F  F  V  V  C  C  T  R  S  E  C  R  I  H  S  L  I  *  R  L  *  T  I  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21380" stop="21469"/>
                    <exon start="21931" stop="22185"/>
                    <exon start="24056" stop="24283"/>
                    <exon start="24867" stop="24980"/>
                    <exon start="26166" stop="26688"/>
                    <exon start="27245" stop="27387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1350</number_coding_nucleotides>
                  <number_encoded_amino_acids>450</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSMGVSGKWIRALVGLKKSEKSHSSEKEENKSGGTGKFWHRRKHSVEIDSNLLQKELTYNDAGAGSVEDISSTSAPFASSSPSSSHQLHHAPLVKQNMREELAAIRIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRMSLESQTEQQKVEQQLEHDARVREIEEGWCDSVGSVEQIQEKLLKRQEAAAKRERAMAYALAHQWQAGSRQQATLSGFEPDKSSWGWNWLERWMAVRPWENRFLDLNVRDGVMPNENESAEPVNGMKNQVKVAGKKPATTTLSNDRVGPSHSSSNSKSNEKAAASLSDGCSSSPNVSASTQETPAALVNKPKSKPNREDLVEEASSKPVLGSRSHSNPKERSTPSDKQGKQRLSLPGSGLAPQTARQPSRTIKRTSSTQKPLKEKSKLNETDTKSTATVSQQAAD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19457" stop="19687"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRRYATVPDHPKTAPFNPTPTPTSALAGTTPHTLLLSSKLITPPYSSSATTCHFFFFFFWGIDYRNSHLGLQDCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25548" e_stop="26091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="25548" e_stop="26091" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25548" stop="26091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</gDNA_template>
            <first_frame> L  L  G  S  F  L  F  I  F  F  I  C  Y  V  C  T  Q  G  H  M  V  P  L  V  R  N  Q  E  Q  L  W  K  N  K  N  S  C  Q  Y  C  G  I  I  L  *  Y  W  L  G  R  T  W  *  A  F  S  L  L  R  I  *  P  *  I  G  G  C  G  G  K  K  F  G  *  K  D  S  S  K  *  F  R  I  F  S  S  P  D  S  I  I  I  M  I  F  Q  Y  L  L  L  F  F  Y  F  H  I  S  H  S  *  F  S  I  T  T  C  L  V  C  L  Y  F  L  T  S  L  Q  L  L  L  L  V  F  I  N  V  V  F  L  L  S  L  S  Q  G  S  I  G  S  S  L  S  T  C  Q  G  R  G  K  V  C  D  T  T  L  L  R  S  H  T  W  V  S  W  C  W  C  C  L  L  V  </first_frame>
            <second_frame>  Y  L  G  L  F  S  S  F  F  L  Y  A  M  C  V  L  K  D  T  W  C  L  *  S  E  I  R  N  N  Y  G  R  I  K  I  A  V  N  T  V  V  S  F  Y  D  T  G  *  A  G  H  G  E  P  L  A  Y  L  G  Y  D  L  R  L  E  G  V  E  V  K  N  S  G  R  R  I  V  V  N  S  F  A  S  F  P  L  L  I  V  L  L  L  *  F  F  S  I  Y  Y  C  F  S  I  S  I  F  L  I  L  S  F  L  *  L  L  V  S  Y  A  S  I  F  L  L  A  C  S  C  Y  C  L  S  S  *  M  L  C  F  C  F  P  *  A  K  G  L  L  E  A  A  S  L  P  A  K  V  G  V  R  S  V  T  L  P  S  S  D  P  T  L  G  *  V  G  V  G  V  V  C  W  F </second_frame>
            <third_frame>   T  W  V  F  S  L  H  F  F  Y  M  L  C  V  Y  S  R  T  H  G  A  S  S  Q  K  S  G  T  T  M  E  E  *  K  *  L  S  I  L  W  Y  H  F  M  I  L  V  R  Q  D  M  V  S  L  *  L  T  *  D  M  T  L  D  W  R  V  W  R  *  K  I  R  V  E  G  *  *  *  I  V  S  H  L  F  L  S  *  *  Y  Y  Y  Y  D  F  S  V  F  I  I  V  F  L  F  P  Y  F  S  F  L  V  F  Y  N  Y  L  S  R  M  P  L  F  S  Y  *  L  A  V  V  T  A  C  L  H  K  C  C  V  F  A  F  L  E  P  R  V  Y  W  K  Q  P  L  Y  L  P  R  *  G  *  G  L  *  H  Y  P  P  Q  I  P  H  L  G  K  L  V  L  V  L  F  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25878" stop="26090"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSITTCLVCLYFLTSLQLLLLVFINVVFLLSLSQGSIGSSLSTCQGRGKVCDTTLLRSHTWVSWCWCCLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30490" PGL_stop="33468"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30490" e_stop="31646"/>
            <exon e_start="32841" e_stop="33468"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30490" e_stop="31646" e_length="1157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31647" i_stop="32840" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="32841" e_stop="33468" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30490" stop="31192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30579" stop="31123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31161" stop="31646"/>
              <exon start="32841" stop="32959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32952" stop="33238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32953" stop="33468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33140" stop="33462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG : GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</gDNA_template>
            <first_frame> F  C  C  F  T  S  F  T  S  I  F  L  H  *  W  *  F  C  C  N  K  K  I  C  S  D  Y  L  *  L  S  L  F  L  L  F  S  F  L  F  L  F  S  S  Y  *  D  Q  K  S  S  Y  L  D  K  S  P  F  L  Y  P  M  N  S  T  I  F  H  F  F  T  K  Q  L  L  L  K  P  L  F  R  N  T  H  L  T  K  N  S  V  L  D  P  L  L  F  V  H  Q  K  S  H  L  C  S  *  Q  I  Q  I  *  S  F  P  Q  F  G  R  S  S  S  M  V  L  N  L  *  I  H  I  Y  T  I  S  T  Y  T  L  T  H  L  S  R  F  H  L  *  W  V  F  L  K  I  D  *  F  R  R  R  E  L  N  V  H  R  R  H  S  Y  L  L  P  G  D  Y  L  L  M  L  Y  L  T  T  H  Q  T  R  I  S  L  L  S  H  N  I  V  Y  L  Y  T  L  L  I  T  F  T  I  F  Y  L  I  P  R  N  C  R  G  K  W  S  S  L  V  I  L  R  F  L  M  N  L  I  R  Y  *  I  G  I  M  Q  E  G  R  I  *  W  N  L  R  *  N  L  R  N  L  K  L  V  H  S  F  L  C  *  Q  E  S  I  L  *  W  *  S  K  I  G  S  Y  G  G  N  L  E  N  H  V  *  M  L  S  L  V  I  Q  K  S  I  I  F  L  L  C  Y  Q  W  R  I  L  M  V  V  P  S  I  H  *  Q  M  *  I  G  L  I  Q  L  M  V  I  H  I  L  I  I  L  L  R  F  L  Q  S  *  F  M  I  L  E  S  Q  I  L  H  I  H  T  C  L  Q  G  N  F  H  L  I  A  *  T  L  *  W  K  W  Q  S  Q  S  S  S  R  T  S  S  C  L  R  Q  W :   *  D  D  E  G  V  K  T  N  Q  R  Q  K  L  *  *  C  C  E  D  K  K  R  L  V  C  C  V  G  V  T  H  V  E  I  R  Y  F  F  *  R  V  C  *  K  T  T  M  P  S  N  Q  V  N  P  K  R  E  V  S  K  T  Q  S  L  D  E  L  S  K  K  S  N  G  K  A  S  F  S  S  S  S  *  A  G  N  L  M  M  *  N  M  S  *  L  *  H  L  V  F  I  W  C  L  C  V  L  L  S  I  L  F  G  F  F  M  N  T  V  Q  S  V  S  D  P  L  K  A  M  L  F  L  K  I  *  Y  E  C  D  N  N  F  G  G  S  E  Q  Y  G  F  C  F  V  H  R  W  Q  V  Y  M  C  F  R  E  R  L  A  L  N  K  I  K  K  S  A  K  L  Y  C  F  F  Y  F  S  T  T  C  G  N  E  S  L  Y  Q  N  I  Y  Y  P  M  *  *  M  I  F  R  E  I  F </first_frame>
            <second_frame>  S  V  A  S  L  L  S  L  Q  S  F  S  I  N  G  D  F  A  V  T  R  K  Y  V  Q  I  I  C  S  Y  P  F  S  Y  S  S  H  F  C  S  Y  S  L  L  I  R  T  K  N  P  L  T  S  T  N  L  H  F  C  T  R  *  T  R  R  S  F  T  F  S  Q  S  N  C  C  *  N  H  F  S  E  T  P  I  S  Q  K  T  P  S  W  I  R  Y  C  S  S  T  K  N  R  I  Y  V  L  N  K  F  R  F  E  V  F  P  N  L  G  E  V  L  Q  W  Y  *  T  C  R  S  T  S  I  Q  Y  L  H  T  R  *  P  I  Y  Q  D  F  T  F  N  G  C  F  *  R  S  I  N  S  G  E  E  N  S  T  F  I  A  D  T  H  I  C  C  P  E  I  T  C  S  C  F  T  *  R  P  I  K  L  V  F  R  S  Y  L  T  T  L  Y  T  F  T  L  F  *  L  L  L  Q  F  F  T  *  Y  P  E  I  V  E  E  N  G  V  P  *  L  Y  *  D  S  *  *  I  *  F  V  I  R  *  V  *  C  K  R  E  E  Y  N  G  T  *  G  E  I  *  G  I  *  S  W  F  T  V  F  C  V  N  K  K  A  F  F  N  G  D  Q  R  *  E  V  M  E  E  I  *  K  T  M  F  K  C  *  V  L  L  S  R  R  A  L  F  S  Y  F  V  I  N  G  G  S  *  W  L  Y  Q  V  Y  I  D  K  C  E  L  D  *  Y  S  *  W  S  S  T  Y  L  S  S  F  *  G  F  F  K  A  D  L  *  S  *  R  V  K  F  Y  I  F  I  H  V  C  K  E  I  F  T  *  L  L  E  P  F  D  G  N  G  R  V  S  H  L  Q  G  L  V  L  A  *  G  N   : G  E  M  M  K  E  *  R  Q  I  K  G  K  N  F  D  D  V  V  R  T  K  K  D  W  F  V  V  *  E  *  H  M  W  K  *  G  I  F  F  E  G  F  V  E  K  Q  Q  C  L  Q  T  K  *  I  P  K  G  K  Y  P  K  L  K  V  W  M  S  F  Q  R  K  A  M  E  K  L  V  L  V  V  V  V  E  L  V  I  *  *  C  K  T  C  L  S  C  S  I  *  Y  S  F  G  V  C  V  C  C  S  L  Y  C  S  D  S  S  *  I  P  S  R  V  C  L  I  L  *  K  L  C  F  F  *  R  S  D  T  N  V  T  T  I  L  E  G  R  S  N  M  G  F  A  L  Y  I  D  G  K  Y  I  C  V  L  G  R  D  *  P  *  T  K  S  R  K  V  L  N  S  I  V  F  F  I  F  L  L  L  V  E  M  N  H  C  I  K  T  F  T  I  Q  C  S  K  *  F  L  E  K  F   </second_frame>
            <third_frame>   L  L  L  H  F  F  H  F  N  L  S  P  L  M  V  I  L  L  *  Q  E  N  M  F  R  L  S  V  V  I  P  F  L  T  L  L  I  S  V  L  I  L  F  L  L  G  P  K  I  L  L  P  R  Q  I  S  I  S  V  P  D  E  L  D  D  L  S  L  F  H  K  A  I  A  A  E  T  T  F  P  K  H  P  S  H  K  K  L  R  L  G  S  A  T  V  R  P  P  K  I  A  F  M  F  L  T  N  S  D  L  K  F  S  P  I  W  E  K  F  F  N  G  T  K  P  V  D  P  H  L  Y  N  I  Y  I  H  A  D  P  S  I  K  I  S  P  L  M  G  V  F  K  D  R  L  I  P  A  K  R  T  Q  R  S  S  P  T  L  I  S  A  A  R  R  L  L  A  H  A  L  L  D  D  P  S  N  S  Y  F  A  L  I  S  Q  H  C  I  P  L  H  S  F  N  Y  F  Y  N  F  L  L  D  T  Q  K  L  S  R  K  M  E  F  P  S  Y  I  E  I  L  D  E  S  D  S  L  L  D  R  Y  N  A  R  G  K  N  I  M  E  P  E  V  K  F  E  E  F  K  V  G  S  Q  F  F  V  L  T  R  K  H  S  L  M  V  I  K  D  R  K  L  W  R  K  F  R  K  P  C  L  N  V  E  S  C  Y  P  E  E  H  Y  F  P  T  L  L  S  M  E  D  P  N  G  C  T  K  Y  T  L  T  N  V  N  W  T  D  T  V  D  G  H  P  H  T  Y  H  P  S  E  V  S  S  K  L  I  Y  D  L  R  E  S  N  S  T  Y  S  Y  M  F  A  R  K  F  S  P  D  C  L  N  P  L  M  E  M  A  E  S  V  I  F  K  D  *  F  L  L  E  A  M  :  V  R  *  *  R  S  E  D  K  S  K  A  K  T  L  M  M  L  *  G  Q  K  K  I  G  L  L  C  R  S  N  T  C  G  N  K  V  F  F  L  K  G  L  L  K  N  N  N  A  F  K  P  S  K  S  Q  K  G  S  I  Q  N  S  K  F  G  *  A  F  K  E  K  Q  W  K  S  *  F  *  *  *  *  L  S  W  *  F  D  D  V  K  H  V  L  V  V  A  S  S  I  H  L  V  F  V  C  V  A  L  Y  I  V  R  I  L  H  E  Y  R  P  E  C  V  *  S  S  K  S  Y  A  F  F  K  D  L  I  R  M  *  Q  Q  F  W  R  V  G  A  I  W  V  L  L  C  T  *  M  A  S  I  Y  V  F  *  G  E  I  S  L  E  Q  N  Q  E  K  C  *  T  L  L  F  F  L  F  F  Y  Y  L  W  K  *  I  I  V  S  K  H  L  L  S  N  V  V  N  D  F  *  R  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30549" stop="31628"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENMFRLSVVIPFLTLLISVLILFLLGPKILLPRQISISVPDELDDLSLFHKAIAAETTFPKHPSHKKLRLGSATVRPPKIAFMFLTNSDLKFSPIWEKFFNGTKPVDPHLYNIYIHADPSIKISPLMGVFKDRLIPAKRTQRSSPTLISAARRLLAHALLDDPSNSYFALISQHCIPLHSFNYFYNFLLDTQKLSRKMEFPSYIEILDESDSLLDRYNARGKNIMEPEVKFEEFKVGSQFFVLTRKHSLMVIKDRKLWRKFRKPCLNVESCYPEEHYFPTLLSMEDPNGCTKYTLTNVNWTDTVDGHPHTYHPSEVSSKLIYDLRESNSTYSYMFARKFSPDCLNPLMEMAESVIFKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33247" stop="33444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YECDNNFGGSEQYGFCFVHRWQVYMCFRERLALNKIKKSAKLYCFFYFSTTCGNESLYQNIYYPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="37350" PGL_stop="40233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37350" e_stop="37544"/>
            <exon e_start="39135" e_stop="40181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37350" e_stop="37544" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="37545" i_stop="39134" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="39135" e_stop="40181" e_length="1047"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37350" stop="37544"/>
              <exon start="39135" stop="39739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37352" stop="37544"/>
              <exon start="39135" stop="39586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37370" stop="37544"/>
              <exon start="39135" stop="39659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37388" stop="37544"/>
              <exon start="39135" stop="39589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37410" stop="37544"/>
              <exon start="39135" stop="39323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37419" stop="37544"/>
              <exon start="39135" stop="39680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37465" stop="37544"/>
              <exon start="39135" stop="39585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39144" stop="39645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39396" stop="40081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39396" stop="39973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="40181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTT</gDNA_template>
            <first_frame> W  K  G  G  E  E  S  G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  A  Q  P  L  R  C  G  K  S  A  V  S  S  A  R  T  A  Q  R  N  V  V  A  W  L  Y  H  K  A  L  S  L  Q  L  N  Q  Q  L  F  F  K  F  P  R  S  F  A  P  H  L  P  K  F  A  F  S  F  Q  V  L  P  F  R  H  V  L  N  I  I  *  D  L  F  Q  G  T  G  C  Y  R  L  L  *  A  Y  M  S  M  M  V  I  Q  P  R  *  L  D  Q  *  L  L  L  T  Y  A  I  Y  I  T  L  *  V  G  L  E  L  K  C  D  N  Q  L  L  L  F  P  E  K  A  I  M  Q  L  C  K  T  L  S  D  *  L  Y  G  V  F  V  Y  V  Y  D  Y  K  A  R  S  F  G  L  L  L  *  I  L  E  K  *  C  I  F  C  C  L  T  F  L  *  D  I  V  H  V  N  L  P  N  P  G  *  S  S  T  V  S  I  F  W  L  N  C  L  *  T  L  S  T  H  I  L  F  V  Q  F  M  T  L  R  N  F  R  C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  V  L </first_frame>
            <second_frame>  G  K  E  E  K  R  A  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   W  L  S  R  Y  D  V  V  N  P  Q  S  H  L  Q  E  Q  P  N  A  M  *  *  H  G  S  T  T  R  H  *  A  Y  N  *  T  S  N  S  F  S  S  F  L  V  H  L  L  P  T  F  L  N  L  L  S  V  F  K  F  Y  P  L  G  M  F  *  T  L  Y  R  T  C  F  K  V  Q  D  V  T  D  Y  S  R  R  I  C  Q  *  W  *  F  S  L  V  N  W  I  N  S  C  Y  *  L  M  L  Y  I  *  L  Y  R  L  G  L  S  L  N  V  I  T  N  F  S  Y  F  Q  K  K  Q  *  C  N  F  A  K  P  C  L  I  N  C  M  E  C  S  Y  M  F  M  I  I  R  R  G  H  L  V  F  C  Y  E  F  L  R  S  D  A  F  S  A  A  L  L  S  C  E  I  S  F  M  L  I  F  P  I  P  V  D  P  P  L  F  Q  F  F  G  *  I  V  S  E  H  S  Q  L  I  F  C  L  C  N  L  *  L  C  E  I  S  G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G  F   </second_frame>
            <third_frame>   E  R  R  R  R  E  R  H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  G  S  A  A  T  M  W  *  I  R  S  L  I  C  K  N  S  P  T  Q  C  S  S  M  A  L  P  Q  G  I  K  L  T  I  E  P  A  T  L  F  Q  V  S  S  F  I  C  S  P  P  S  *  I  C  F  Q  F  S  S  F  T  L  *  A  C  F  E  H  Y  I  G  L  V  S  R  Y  R  M  L  Q  I  T  L  G  V  Y  V  N  D  G  N  S  A  S  L  I  G  S  I  A  V  I  N  L  C  Y  I  Y  N  F  I  G  W  A  *  A  *  M  *  *  P  T  S  P  I  S  R  K  S  N  N  A  T  L  Q  N  L  V  *  L  T  V  W  S  V  R  I  C  L  *  L  *  G  E  V  I  W  S  S  V  M  N  S  *  E  V  M  H  F  L  L  P  Y  F  P  V  R  Y  R  S  C  *  S  S  Q  S  R  L  I  L  H  C  F  N  F  L  A  K  L  S  L  N  T  L  N  S  Y  S  V  C  A  I  Y  D  F  A  K  F  Q  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37458" stop="37544"/>
                    <exon start="39135" stop="39347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKLWDRLIQNWIQFFRITSVIVIVLFRSVAQPLRCGKSAVSSARTAQRNVVAWLYHKALSLQLNQQLFFKFPRSFAPHLPKFAFSFQVLPFRHVLNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39529" stop="39729"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNFAKPCLINCMECSYMFMIIRRGHLVFCYEFLRSDAFSAALLSCEISFMLIFPIPVDPPLFQFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37371" e_stop="37544"/>
            <exon e_start="39794" e_stop="40233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37371" e_stop="37544" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37545" i_stop="39793" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="39794" e_stop="40233" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37371" stop="37544"/>
              <exon start="39794" stop="40175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37393" stop="37544"/>
              <exon start="39794" stop="40227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37400" stop="37544"/>
              <exon start="39794" stop="40219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37401" stop="37544"/>
              <exon start="39794" stop="40233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</gDNA_template>
            <first_frame> G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M  G  S  C  F  V  S  H  L  C  R  F  N  L  Y  V  S  *  N  *   </first_frame>
            <second_frame>  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  V  L  A  L  Y  L  I  C  V  V  L  I  F  M  L  V  E  I  D  </second_frame>
            <third_frame>   H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G  F  L  L  C  I  S  F  V  S  F  *  S  L  C  *  L  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37412" stop="37544"/>
                    <exon start="39794" stop="39966"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSYTKRREEERKQITKKIMGSTDSELDSIFQDNKRHRNRLVPIGAFLTAGVLTAGLISFKRGNSQLGQQLMRARVLVQGGTVALMVGSAYYYGDNFKRAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41031" PGL_stop="45009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41031" e_stop="41156"/>
            <exon e_start="42420" e_stop="42490"/>
            <exon e_start="42668" e_stop="42747"/>
            <exon e_start="43625" e_stop="43739"/>
            <exon e_start="43952" e_stop="44004"/>
            <exon e_start="44434" e_stop="44562"/>
            <exon e_start="44643" e_stop="45009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.957" e_score="0.929"/>
          <exon-intron don_prob="0.199" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="41031" e_stop="41156" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.957">
            <gDNA_intron_boundary i_start="41157" i_stop="42419" i_length="1263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42420" e_stop="42490" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.199" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42491" i_stop="42667" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42668" e_stop="42747" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42748" i_stop="43624" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43625" e_stop="43739" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="43740" i_stop="43951" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43952" e_stop="44004" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44005" i_stop="44433" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44434" e_stop="44562" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="44563" i_stop="44642" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="44643" e_stop="45009" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41031" stop="41156"/>
              <exon start="42420" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="45009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41032" stop="41156"/>
              <exon start="42420" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="44654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41109" stop="41156"/>
              <exon start="42420" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="44773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42420" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="44709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42434" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="44948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42436" stop="42490"/>
              <exon start="42668" stop="42747"/>
              <exon start="43625" stop="43739"/>
              <exon start="43952" stop="44004"/>
              <exon start="44434" stop="44562"/>
              <exon start="44643" stop="44983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG : ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT : GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA : GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT : GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG : ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG : AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</gDNA_template>
            <first_frame> V  T  W  *  V  V  G  Y  L  F  C  *  A  T  A  M  E  A  I  L  K  K  K  T  K  C  E  G  Q  F  L  N  F  F  R  R  K  K  K  S  R  K  :  I  L  R  I  N  S  *  L  K  M  S  S  P  S  K  R  R  D  M  D  V  M  K  L :   M  M  S  D  Y  K  V  E  T  I  N  D  G  I  T  E  F  N  V  E  F  H  G  P  K  E   : S  L  Y  E  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  L  N  K  I  F  H  P  N  V  D  E  L :   S  G  S  V  C  L  D  V  I  N  Q  S  W  S  P  M  F   : D  L  L  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  D  A  A  S  L  M  M  K  D  K  N  Q  Y  E  Q  K  V  K   : E  Y  C  E  R  Y  A  K  K  E  N  V  V  G  T  P  K  D  D  S  D  D  E  I  S  E  E  E  F  S  G  Q  S  E  S  D  D  E  V  V  G  H  A  D  P  *  V  N  K  L  G  S  *  N  G  D  H  V  F  S  S  F  F  S  L  H  V  I  S  D  S  S  S  H  V  N  L  G  A  K  D  S  L  G  T  I  Y  I  T  Y  R  C  V  M  N  L  S  L  C  R  N  S  L  P  Y  G  Q  C  N  L  P  I  Y  V  L  K  I  Q  V  L  V  L   </first_frame>
            <second_frame>  *  H  G  R  *  W  V  T  F  F  V  E  L  Q  P  W  K  L  F  *  R  R  R  Q  S  A  K  D  N  F  S  I  F  S  E  E  K  K  K  A  E  R :   F  *  G  S  I  V  S  *  K  C  L  L  Q  A  K  E  E  I  W  M  L  *  N   : *  *  *  V  I  I  R  W  R  Q  L  M  M  E  L  R  S  S  T  W  N  F  T  A  Q  K  K  :  A  F  M  K  V  E  F  G  K  *  G  S  S  C  Q  M  P  T  L  T  S  L  L  P  S  G  F  S  T  K  Y  S  T  L  M  L  M  S   : C  L  A  L  Y  V  W  M  S  S  I  S  H  G  A  L  C  L  :  I  S  *  T  F  L  R  F  S  C  H  S  F  C  Y  I  R  I  L  R  I  H  *  M  V  M  Q  P  H  *  *  *  K  T  R  I  N  M  S  K  K  *  K  :  S  T  V  N  G  T  Q  R  R  R  M  S  L  A  H  Q  K  M  I  V  M  M  R  L  V  K  R  S  S  V  D  K  A  K  A  M  M  K  L  L  D  M  L  I  L  E  *  I  N  *  D  P  K  M  E  I  M  F  L  V  H  F  S  P  Y  M  *  Y  P  I  R  R  R  M  *  I  *  V  P  K  I  V  *  G  Q  Y  T  *  P  T  D  V  *  *  I  S  V  C  V  E  T  L  Y  L  M  V  N  V  T  Y  Q  Y  M  C  *  K  F  R  F  L  F  *  </second_frame>
            <third_frame>   D  M  V  G  S  G  L  P  F  L  L  S  Y  S  H  G  S  Y  F  E  E  E  D  K  V  R  R  T  I  S  Q  F  F  Q  K  K  K  K  K  P  K   : D  S  E  D  Q  *  L  V  E  N  V  F  S  K  Q  K  K  R  Y  G  C  Y  E  I  :  D  D  E  *  L  *  G  G  D  N  *  *  W  N  Y  G  V  Q  R  G  I  S  R  P  K  R  K :   P  L  *  R  W  S  L  E  N  K  G  R  V  A  R  C  L  P  L  Q  V  S  F  H  R  V  S  Q  Q  N  I  P  P  *  C  *  *  A  :  V  W  L  C  M  F  G  C  H  Q  S  V  M  E  P  Y  V  * :   S  L  K  R  F  *  G  F  P  A  T  A  F  A  I  S  E  S  F  G  S  I  K  W  *  C  S  L  T  D  D  E  R  Q  E  S  I  *  A  K  S  E  R :   V  L  *  T  V  R  K  E  G  E  C  R  W  H  T  K  R  *  *  *  *  *  D  *  *  R  G  V  Q  W  T  K  R  K  R  *  *  S  C  W  T  C  *  S  L  S  E  *  T  R  I  L  K  W  R  S  C  F  *  F  I  F  L  L  T  C  N  I  R  F  V  V  A  C  K  S  R  C  Q  R  *  F  R  D  N  I  H  N  L  Q  M  C  D  E  S  Q  S  V  *  K  L  S  T  L  W  S  M  *  L  T  N  I  C  V  K  N  S  G  S  C  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42441" stop="42490"/>
                    <exon start="42668" stop="42747"/>
                    <exon start="43625" stop="43739"/>
                    <exon start="43952" stop="44004"/>
                    <exon start="44434" stop="44562"/>
                    <exon start="44643" stop="44779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSSPSKRRDMDVMKLMMSDYKVETINDGITEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFLNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDKNQYEQKVKEYCERYAKKENVVGTPKDDSDDEISEEEFSGQSESDDEVVGHADP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44801" stop="45007"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDHVFSSFFSLHVISDSSSHVNLGAKDSLGTIYITYRCVMNLSLCRNSLPYGQCNLPIYVLKIQVLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="42580" PGL_stop="41900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42580" e_stop="42388"/>
            <exon e_start="42335" e_stop="41900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.322" acc_prob="0.000" e_score="0.938"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="42580" e_stop="42388" e_length="193"/>
          </exon>
          <intron i_serial="1" don_prob="0.322" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42387" i_stop="42336" i_length="52"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="42335" e_stop="41900" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42580" stop="42388"/>
              <exon start="42335" stop="41900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604101" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGATAAGATGAAGAAACAGCTAAATTGTTTAGAATCTACAAAATTATATCCATGACAGCAAGAAAATCTTATCTCAGACGTTCTTACAATTTCATAACATCCATATCTCTTCTTTTGCTTGGAGAAGACATTTTCAACTAACTATTGATCCTCAGAATCTGCGGAATGAAGCCAAGGATTCAACATATGA : GTAAGTTCAGTAAAAAAGATGTAAAAACAGAAACCAAACAACGAGATCAGCAATTACGCGTCTGTTTATGAAAGAGCATAAGAAATAAATGGTTACAACAACGACGGATAATACAGTAACTGCAGCAAATAAGGGAACTAGATAATGCTCGACTACCTACTAACCTTCTACCCCAATCCTCGACCTCCATATCTTCCTATCTATGATCATGTCATCGATAAACTAAAGGTGTGGTATGTCATGTCTACTCACCTTTCCCAAGATTTCTGCGGTTCTACCTCTACCTCCCCTTATACCAAAATAGTCAACCAGACACCTCATCATTGGGGCATATGTGCATCTTCTCTTCAGACGCCCAAACTATCTCAATCTCACCTCCCTCATCTTACACCATGTAGGCCACTCCCACCTAGTCCTGAATAGCTTCTTTCTTAAT</gDNA_template>
            <first_frame> I  R  *  D  E  E  T  A  K  L  F  R  I  Y  K  I  I  S  M  T  A  R  K  S  Y  L  R  R  S  Y  N  F  I  T  S  I  S  L  L  L  L  G  E  D  I  F  N  *  L  L  I  L  R  I  C  G  M  K  P  R  I  Q  H  M   : S  K  F  S  K  K  D  V  K  T  E  T  K  Q  R  D  Q  Q  L  R  V  C  L  *  K  S  I  R  N  K  W  L  Q  Q  R  R  I  I  Q  *  L  Q  Q  I  R  E  L  D  N  A  R  L  P  T  N  L  L  P  Q  S  S  T  S  I  S  S  Y  L  *  S  C  H  R  *  T  K  G  V  V  C  H  V  Y  S  P  F  P  R  F  L  R  F  Y  L  Y  L  P  L  Y  Q  N  S  Q  P  D  T  S  S  L  G  H  M  C  I  F  S  S  D  A  Q  T  I  S  I  S  P  P  S  S  Y  T  M  *  A  T  P  T  *  S  *  I  A  S  F  L   </first_frame>
            <second_frame>  S  D  K  M  K  K  Q  L  N  C  L  E  S  T  K  L  Y  P  *  Q  Q  E  N  L  I  S  D  V  L  T  I  S  *  H  P  Y  L  F  F  C  L  E  K  T  F  S  T  N  Y  *  S  S  E  S  A  E  *  S  Q  G  F  N  I  *  :  V  S  S  V  K  K  M  *  K  Q  K  P  N  N  E  I  S  N  Y  A  S  V  Y  E  R  A  *  E  I  N  G  Y  N  N  D  G  *  Y  S  N  C  S  K  *  G  N  *  I  M  L  D  Y  L  L  T  F  Y  P  N  P  R  P  P  Y  L  P  I  Y  D  H  V  I  D  K  L  K  V  W  Y  V  M  S  T  H  L  S  Q  D  F  C  G  S  T  S  T  S  P  Y  T  K  I  V  N  Q  T  P  H  H  W  G  I  C  A  S  S  L  Q  T  P  K  L  S  Q  S  H  L  P  H  L  T  P  C  R  P  L  P  P  S  P  E  *  L  L  S  *  </second_frame>
            <third_frame>   Q  I  R  *  R  N  S  *  I  V  *  N  L  Q  N  Y  I  H  D  S  K  K  I  L  S  Q  T  F  L  Q  F  H  N  I  H  I  S  S  F  A  W  R  R  H  F  Q  L  T  I  D  P  Q  N  L  R  N  E  A  K  D  S  T  Y  E :   *  V  Q  *  K  R  C  K  N  R  N  Q  T  T  R  S  A  I  T  R  L  F  M  K  E  H  K  K  *  M  V  T  T  T  T  D  N  T  V  T  A  A  N  K  G  T  R  *  C  S  T  T  Y  *  P  S  T  P  I  L  D  L  H  I  F  L  S  M  I  M  S  S  I  N  *  R  C  G  M  S  C  L  L  T  F  P  K  I  S  A  V  L  P  L  P  P  L  I  P  K  *  S  T  R  H  L  I  I  G  A  Y  V  H  L  L  F  R  R  P  N  Y  L  N  L  T  S  L  I  L  H  H  V  G  H  S  H  L  V  L  N  S  F  F  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42194" stop="41913"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMLDYLLTFYPNPRPPYLPIYDHVIDKLKVWYVMSTHLSQDFCGSTSTSPYTKIVNQTPHHWGICASSLQTPKLSQSHLPHLTPCRPLPPSPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45046" PGL_stop="44690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45046" e_stop="44690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="45046" e_stop="44690" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45046" stop="44690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAAAGATAAGGAACACATGAGGTCTGAAGACAAGTTTAAAACAAGAACCTGAATTTTTAACACATATATTGGTAAGTTACATTGACCATAAGGTAGAGAGTTTCTACACAGACTGAGATTCATCACACATCTGTAGGTTATGTATATTGTCCCTAAACTATCTTTGGCACCTAGATTTACATGCGACGACGAATCGGATATTACATGTAAGGAGAAAAATGAACTAAAAACATGATCTCCATTTTAGGATCCTAGTTTATTCACTCAAGGATCAGCATGTCCAACAACTTCATCATCGCTTTCGCTTTGTCCACTGAACTCCTCTTCACTAATCTCATCATCACTATCATCTTT</gDNA_template>
            <first_frame> P  E  R  *  G  T  H  E  V  *  R  Q  V  *  N  K  N  L  N  F  *  H  I  Y  W  *  V  T  L  T  I  R  *  R  V  S  T  Q  T  E  I  H  H  T  S  V  G  Y  V  Y  C  P  *  T  I  F  G  T  *  I  Y  M  R  R  R  I  G  Y  Y  M  *  G  E  K  *  T  K  N  M  I  S  I  L  G  S  *  F  I  H  S  R  I  S  M  S  N  N  F  I  I  A  F  A  L  S  T  E  L  L  F  T  N  L  I  I  T  I  I  F </first_frame>
            <second_frame>  L  K  D  K  E  H  M  R  S  E  D  K  F  K  T  R  T  *  I  F  N  T  Y  I  G  K  L  H  *  P  *  G  R  E  F  L  H  R  L  R  F  I  T  H  L  *  V  M  Y  I  V  P  K  L  S  L  A  P  R  F  T  C  D  D  E  S  D  I  T  C  K  E  K  N  E  L  K  T  *  S  P  F  *  D  P  S  L  F  T  Q  G  S  A  C  P  T  T  S  S  S  L  S  L  C  P  L  N  S  S  S  L  I  S  S  S  L  S  S   </second_frame>
            <third_frame>   *  K  I  R  N  T  *  G  L  K  T  S  L  K  Q  E  P  E  F  L  T  H  I  L  V  S  Y  I  D  H  K  V  E  S  F  Y  T  D  *  D  S  S  H  I  C  R  L  C  I  L  S  L  N  Y  L  W  H  L  D  L  H  A  T  T  N  R  I  L  H  V  R  R  K  M  N  *  K  H  D  L  H  F  R  I  L  V  Y  S  L  K  D  Q  H  V  Q  Q  L  H  H  R  F  R  F  V  H  *  T  P  L  H  *  S  H  H  H  Y  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0089M02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57441" PGL_stop="48817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57441" e_stop="57187"/>
            <exon e_start="55334" e_stop="55268"/>
            <exon e_start="55167" e_stop="55132"/>
            <exon e_start="54974" e_stop="54830"/>
            <exon e_start="54393" e_stop="54235"/>
            <exon e_start="54118" e_stop="54048"/>
            <exon e_start="53965" e_stop="53887"/>
            <exon e_start="53770" e_stop="53655"/>
            <exon e_start="52496" e_stop="52349"/>
            <exon e_start="51177" e_stop="51108"/>
            <exon e_start="49182" e_stop="48817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.863"/>
          <exon-intron don_prob="0.949" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.972"/>
          <exon-intron don_prob="0.998" acc_prob="0.571" e_score="0.993"/>
          <exon-intron don_prob="0.982" acc_prob="0.869" e_score="0.956"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="0.732"/>
          <exon-intron don_prob="0.969" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.937" e_score="0.991"/>
          <exon-intron don_prob="0.759" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.863">
            <gDNA_exon_boundary e_start="57441" e_stop="57187" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="57186" i_stop="55335" i_length="1852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55334" e_stop="55268" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.920">
            <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="55167" e_stop="55132" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="54974" e_stop="54830" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.571">
            <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="54393" e_stop="54235" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.869">
            <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="0.732">
            <gDNA_exon_boundary e_start="54118" e_stop="54048" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53965" e_stop="53887" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.751">
            <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="53770" e_stop="53655" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="0.937">
            <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52496" e_stop="52349" e_length="148"/>
          </exon>
          <intron i_serial="9" don_prob="0.759" acc_prob="0.872">
            <gDNA_intron_boundary i_start="52348" i_stop="51178" i_length="1171"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51177" e_stop="51108" e_length="70"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51107" i_stop="49183" i_length="1925"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="49182" e_stop="48817" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57441" stop="57187"/>
              <exon start="55334" stop="55268"/>
              <exon start="55167" stop="55132"/>
              <exon start="54974" stop="54830"/>
              <exon start="54393" stop="54280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57441" stop="57187"/>
              <exon start="55334" stop="55268"/>
              <exon start="55167" stop="55132"/>
              <exon start="54974" stop="54836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54287" stop="54235"/>
              <exon start="54118" stop="54048"/>
              <exon start="53965" stop="53887"/>
              <exon start="53770" stop="53655"/>
              <exon start="52496" stop="52349"/>
              <exon start="51177" stop="51108"/>
              <exon start="49182" stop="48817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGACTGAAGAGTACTAAAGCCAATCTACAAAGCAAGAGATAACTTGAGAATTAGCGATTCTCAAATTTTCCCTCTTCTAATGTTTTCTTTATATTCGTTTTACATAAACCTCAGAAGCCTCTATATACTGCGACACACTGAATAAGTACAAAAACAAACAACACGACCTTGTAGAAGTTTCAATCATTTTGAATGGTGGAAAACTCATTAATAGGCTAATGGGTGCTCAGAAAAGCATTCATGCTGGCAAAG : CTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG : GAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAG : TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG : CATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA : CATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAG : TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA : TTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAG : CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTG : AGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCG : GAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCACAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAATTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</gDNA_template>
            <first_frame> K  R  L  K  S  T  K  A  N  L  Q  S  K  R  *  L  E  N  *  R  F  S  N  F  P  S  S  N  V  F  F  I  F  V  L  H  K  P  Q  K  P  L  Y  T  A  T  H  *  I  S  T  K  T  N  N  T  T  L  *  K  F  Q  S  F  *  M  V  E  N  S  L  I  G  *  W  V  L  R  K  A  F  M  L  A  K  :  L  K  *  M  S  M  W  I  S  P  I  N  Y  V  L  L  *  C  S  S  L  S   : G  I  L  A  V  P  L  N  W  *  L  A   : V  F  A  *  N  T  Q  I  Y  L  A  R  A  R  S  *  M  F  C  G  I  K  D  S  M  I  P  I  S  *  L  L  I  G  S  Q  D  Q  N  G  L  L  N  S  L  L  L  F  S :   I  P  F  L  P  R  L  G  Y  M  A  Y  Q  M  T  T  S  L  D  Q  E  V  V  E  L  T  Y  L  A  Y  L  L  A  *  I  *  A  S  L  Q  V  P  T  G  A  A  R  Q  V  *  N  L  N :   I  F  V  L  *  V  M  R  V  G  Q  *  I  E  I  L  M  G  F  R  *  L  A   : V  V  A  I  M  T  V  W  *  *  L  N  R  S  L  D  T  Q  K  Q  T  I  V  V  F  L  N :   L  A  C  K  L  N  R  G  F  P  F  F  P  S  G  *  S  L  T  D  S  S  L  L  H  Q  G  D  *  N  L  G  Q  L  F  S  C  Q   : A  L  R  V  V  L  S  W  G  I  *  L  P  I  K  L  L  Q  L  A  V  L  V  A  S  E  G  M  V  K  E  L  L  V  V  V  D  L  V  W  L  L  T  M  N  *  R  F  L  * :   A  R  C  L  M  V  L  S  S  W  I  V  D  L  T  W  A  Q  V  V  M  C  P  :  E  T  L  L  L  G  L  A  N  Q  E  M  E  L  A  S  D  M  A  L  D  S  S  H  S  W  A  I  S  R  W  T  M  Q  S  M  H  F  N  N  E  L  S  T  S  A  S  V  T  S  L  R  E  S  *  P  Q  H  L  Q  P  *  H  N  L  *  T  A  L  H  P  *  R  K  L  *  G  Y  L  Q  E  I  R  C  *  G  P  S  S  G  P  S  L  I  G  T  A  V  K  I  S  F  *  K  H  I  E  Q  I  S  A  Q  R  W  F  H  F  P  C  T  S  S </first_frame>
            <second_frame>  K  D  *  R  V  L  K  P  I  Y  K  A  R  D  N  L  R  I  S  D  S  Q  I  F  P  L  L  M  F  S  L  Y  S  F  Y  I  N  L  R  S  L  Y  I  L  R  H  T  E  *  V  Q  K  Q  T  T  R  P  C  R  S  F  N  H  F  E  W  W  K  T  H  *  *  A  N  G  C  S  E  K  H  S  C  W  Q  S :   *  N  R  C  Q  C  G  F  H  P  *  T  M  C  C  F  D  A  P  A  F  Q  :  E  F  W  Q  S  P  *  I  G  N  W  Q  :  S  L  H  K  T  P  K  F  I  W  Q  E  R  E  A  R  C  F  V  G  *  R  T  L  *  F  Q  Y  L  D  Y  L  S  E  A  K  T  R  M  A  C  S  T  V  F  C  C  S   : A  F  H  F  S  R  D  W  G  T  W  L  T  R  *  Q  L  L  S  I  R  K  W  W  S  *  L  I  S  L  I  C  W  L  R  F  E  R  A  C  K  F  Q  L  E  Q  Q  D  K  Y  K  I  *   : T  Y  S  S  C  K  *  *  G  S  V  N  K  *  R  Y  S  W  V  S  G  D  L  Q  :  W  W  L  *  *  Q  Y  G  S  S  *  T  G  V  S  I  R  K  S  K  R  S  *  F  F  S   : I  *  P  A  N  *  T  G  G  S  H  S  F  Q  V  A  D  L  *  P  I  Q  V  C  C  I  K  G  T  K  T  W  A  S  F  S  L  V  K  :  P  Y  G  W  F  Y  R  G  G  Y  S  S  L  S  S  F  C  N  W  R  S  W  *  R  P  R  V  W  *  R  S  C  W  L  W  *  I  L  S  G  C  *  Q  *  T  D  V  S  F   : E  P  G  A  *  W  C  C  L  L  G  L  W  I  *  L  G  L  R  S  S  C  A  R :   K  P  C  S  *  A  W  Q  T  R  K  W  N  W  L  R  I  W  P  *  I  Q  V  T  A  G  P  F  P  G  G  L  C  S  Q  C  I  S  T  T  N  C  L  L  R  L  Q  *  P  P  F  V  S  L  N  H  N  T  C  N  H  D  I  T  Y  E  Q  R  C  I  H  R  E  N  Y  E  D  I  C  K  R  S  D  V  R  V  R  A  V  V  R  P  L  *  E  Q  Q  *  R  F  L  F  E  N  I  L  S  K  L  V  H  R  G  G  S  I  F  P  V  P  L   </second_frame>
            <third_frame>   K  T  E  E  Y  *  S  Q  S  T  K  Q  E  I  T  *  E  L  A  I  L  K  F  S  L  F  *  C  F  L  Y  I  R  F  T  *  T  S  E  A  S  I  Y  C  D  T  L  N  K  Y  K  N  K  Q  H  D  L  V  E  V  S  I  I  L  N  G  G  K  L  I  N  R  L  M  G  A  Q  K  S  I  H  A  G  K   : A  K  I  D  V  N  V  D  F  T  H  K  L  C  A  A  L  M  L  Q  P  F  R :   N  S  G  S  P  L  E  L  V  I  G  S :   L  C  I  K  H  P  N  L  F  G  K  S  E  K  L  D  V  L  W  D  K  G  L  Y  D  S  N  I  L  I  T  Y  R  K  P  R  P  E  W  L  A  Q  Q  S  F  V  V  Q  :  H  S  I  S  P  E  I  G  V  H  G  L  P  D  D  N  F  S  R  S  G  S  G  G  V  N  L  S  R  L  S  A  G  L  D  L  S  E  P  A  S  S  N  W  S  S  K  T  S  I  K  F  E  :  H  I  R  P  V  S  D  E  G  R  S  I  N  R  D  T  H  G  F  P  V  T  C  S :   G  G  Y  N  D  S  M  V  V  V  K  Q  E  S  R  Y  A  K  A  N  D  R  S  F  S  Q  :  F  S  L  Q  I  E  Q  G  V  P  I  L  S  K  W  L  I  F  N  R  F  K  F  V  A  S  R  G  L  K  L  G  P  A  F  L  L  S  S :   L  T  G  G  S  I  V  G  D  I  A  P  Y  Q  A  F  A  I  G  G  L  G  S  V  R  G  Y  G  E  G  A  V  G  C  G  R  S  C  L  V  A  N  N  E  L  T  F  P  L  :  S  Q  V  L  D  G  A  V  F  L  D  C  G  S  D  L  G  S  G  R  H  V  P   : G  N  P  A  L  R  L  G  K  P  G  N  G  I  G  F  G  Y  G  L  R  F  K  S  Q  L  G  H  F  Q  V  D  Y  A  V  N  A  F  Q  Q  R  T  V  Y  F  G  F  S  N  L  P  S  *  V  L  T  T  T  L  A  T  M  T  *  L  M  N  S  A  A  S  I  E  K  I  M  R  I  S  A  R  D  Q  M  L  G  S  E  Q  W  S  V  P  Y  R  N  S  S  E  D  F  F  L  K  T  Y  *  A  N  *  C  T  E  V  V  P  F  S  L  Y  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57331" stop="57187"/>
                    <exon start="55334" stop="55268"/>
                    <exon start="55167" stop="55132"/>
                    <exon start="54974" stop="54830"/>
                    <exon start="54393" stop="54235"/>
                    <exon start="54118" stop="54048"/>
                    <exon start="53965" stop="53887"/>
                    <exon start="53770" stop="53655"/>
                    <exon start="52496" stop="52349"/>
                    <exon start="51177" stop="51108"/>
                    <exon start="49182" stop="49025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1191</number_coding_nucleotides>
                  <number_encoded_amino_acids>397</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSEASIYCDTLNKYKNKQHDLVEVSIILNGGKLINRLMGAQKSIHAGKAKIDVNVDFTHKLCAALMLQPFRNSGSPLELVIGSLCIKHPNLFGKSEKLDVLWDKGLYDSNILITYRKPRPEWLAQQSFVVQHSISPEIGVHGLPDDNFSRSGSGGVNLSRLSAGLDLSEPASSNWSSKTSIKFEHIRPVSDEGRSINRDTHGFPVTCSGGYNDSMVVVKQESRYAKANDRSFSQFSLQIEQGVPILSKWLIFNRFKFVASRGLKLGPAFLLSSLTGGSIVGDIAPYQAFAIGGLGSVRGYGEGAVGCGRSCLVANNELTFPLSQVLDGAVFLDCGSDLGSGRHVPGNPALRLGKPGNGIGFGYGLRFKSQLGHFQVDYAVNAFQQRTVYFGFSNLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56701" e_stop="56647"/>
            <exon e_start="55334" e_stop="55268"/>
            <exon e_start="55167" e_stop="55132"/>
            <exon e_start="54974" e_stop="54830"/>
            <exon e_start="54393" e_stop="54235"/>
            <exon e_start="54118" e_stop="54048"/>
            <exon e_start="53965" e_stop="53887"/>
            <exon e_start="53770" e_stop="53655"/>
            <exon e_start="52496" e_stop="52349"/>
            <exon e_start="51177" e_stop="51108"/>
            <exon e_start="49182" e_stop="48817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.909"/>
          <exon-intron don_prob="0.949" acc_prob="0.920" e_score="0.985"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.571" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.937" e_score="0.991"/>
          <exon-intron don_prob="0.759" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="56701" e_stop="56647" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56646" i_stop="55335" i_length="1312"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="55334" e_stop="55268" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.920">
            <gDNA_intron_boundary i_start="55267" i_stop="55168" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55167" e_stop="55132" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55131" i_stop="54975" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54974" e_stop="54830" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.571">
            <gDNA_intron_boundary i_start="54829" i_stop="54394" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54393" e_stop="54235" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.869">
            <gDNA_intron_boundary i_start="54234" i_stop="54119" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54118" e_stop="54048" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54047" i_stop="53966" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53965" e_stop="53887" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.969" acc_prob="0.751">
            <gDNA_intron_boundary i_start="53886" i_stop="53771" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="53770" e_stop="53655" e_length="116"/>
          </exon>
          <intron i_serial="8" don_prob="0.963" acc_prob="0.937">
            <gDNA_intron_boundary i_start="53654" i_stop="52497" i_length="1158"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52496" e_stop="52349" e_length="148"/>
          </exon>
          <intron i_serial="9" don_prob="0.759" acc_prob="0.872">
            <gDNA_intron_boundary i_start="52348" i_stop="51178" i_length="1171"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51177" e_stop="51108" e_length="70"/>
          </exon>
          <intron i_serial="10" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="51107" i_stop="49183" i_length="1925"/>
          </intron>
          <exon e_serial="11" e_score="0.992">
            <gDNA_exon_boundary e_start="49182" e_stop="48817" e_length="366"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56701" stop="56647"/>
              <exon start="55334" stop="55268"/>
              <exon start="55167" stop="55132"/>
              <exon start="54974" stop="54830"/>
              <exon start="54393" stop="54235"/>
              <exon start="54118" stop="54048"/>
              <exon start="53965" stop="53887"/>
              <exon start="53770" stop="53655"/>
              <exon start="52496" stop="52393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54287" stop="54235"/>
              <exon start="54118" stop="54048"/>
              <exon start="53965" stop="53887"/>
              <exon start="53770" stop="53655"/>
              <exon start="52496" stop="52349"/>
              <exon start="51177" stop="51108"/>
              <exon start="49182" stop="48817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAACTCATTAATCGGCTAATGGGTGCTCAGAAAAGCGTTCGTGCTGGCAAAG : CTAAAATAGATGTCAATGTGGATTTCACCCATAAACTATGTGCTGCTTTGATGCTCCAGCCTTTCAG : GAATTCTGGCAGTCCCCTTGAATTGGTAATTGGCAG : TCTTTGCATAAAACACCCAAATTTATTTGGCAAGAGCGAGAAGCTAGATGTTTTGTGGGATAAAGGACTCTATGATTCCAATATCTTGATTACTTATCGGAAGCCAAGACCAGAATGGCTTGCTCAACAGTCTTTTGTTGTTCAG : CATTCCATTTCTCCCGAGATTGGGGTACATGGCTTACCAGATGACAACTTCTCTCGATCAGGAAGTGGTGGAGTTAACTTATCTCGCTTATCTGCTGGCTTAGATTTGAGCGAGCCTGCAAGTTCCAACTGGAGCAGCAAGACAAGTATAAAATTTGAA : CATATTCGTCCTGTAAGTGATGAGGGTCGGTCAATAAATAGAGATACTCATGGGTTTCCGGTGACTTGCAG : TGGTGGCTATAATGACAGTATGGTAGTAGTTAAACAGGAGTCTCGATACGCAAAAGCAAACGATCGTAGTTTTTCTCAA : TTTAGCCTGCAAATTGAACAGGGGGTTCCCATTCTTTCCAAGTGGCTGATCTTTAACCGATTCAAGTTTGTTGCATCAAGGGGACTAAAACTTGGGCCAGCTTTTCTCTTGTCAAG : CCTTACGGGTGGTTCTATCGTGGGGGATATAGCTCCCTATCAAGCTTTTGCAATTGGCGGTCTTGGTAGCGTCCGAGGGTATGGTGAAGGAGCTGTTGGTTGTGGTAGATCTTGTCTGGTTGCTAACAATGAACTGACGTTTCCTTTG : AGCCAGGTGCTTGATGGTGCTGTCTTCTTGGATTGTGGATCTGACTTGGGCTCAGGTCGTCATGTGCCCG : GAAACCCTGCTCTTAGGCTTGGCAAACCAGGAAATGGAATTGGCTTCGGATATGGCCTTAGATTCAAGTCACAGCTGGGCCATTTCCAGGTGGACTATGCAGTCAATGCATTTCAACAACGAACTGTCTACTTCGGCTTCAGTAACCTCCCTTCGTGAGTCTTAACCACAACACTTGCAACCATGACATAACTTATGAACAGCGCTGCATCCATAGAGAAAATTATGAGGATATCTGCAAGAGATCAGATGTTAGGGTCCGAGCAGTGGTCCGTCCCTTATAGGAACAGCAGTGAAGATTTCTTTTTGAAAACATATTGAGCAAATTAGTGCACAGAGGTGGTTCCATTTTCCCTGTACCTCTTCA</gDNA_template>
            <first_frame> E  K  L  I  N  R  L  M  G  A  Q  K  S  V  R  A  G  K   : A  K  I  D  V  N  V  D  F  T  H  K  L  C  A  A  L  M  L  Q  P  F  R :   N  S  G  S  P  L  E  L  V  I  G  S :   L  C  I  K  H  P  N  L  F  G  K  S  E  K  L  D  V  L  W  D  K  G  L  Y  D  S  N  I  L  I  T  Y  R  K  P  R  P  E  W  L  A  Q  Q  S  F  V  V  Q  :  H  S  I  S  P  E  I  G  V  H  G  L  P  D  D  N  F  S  R  S  G  S  G  G  V  N  L  S  R  L  S  A  G  L  D  L  S  E  P  A  S  S  N  W  S  S  K  T  S  I  K  F  E  :  H  I  R  P  V  S  D  E  G  R  S  I  N  R  D  T  H  G  F  P  V  T  C  S :   G  G  Y  N  D  S  M  V  V  V  K  Q  E  S  R  Y  A  K  A  N  D  R  S  F  S  Q  :  F  S  L  Q  I  E  Q  G  V  P  I  L  S  K  W  L  I  F  N  R  F  K  F  V  A  S  R  G  L  K  L  G  P  A  F  L  L  S  S :   L  T  G  G  S  I  V  G  D  I  A  P  Y  Q  A  F  A  I  G  G  L  G  S  V  R  G  Y  G  E  G  A  V  G  C  G  R  S  C  L  V  A  N  N  E  L  T  F  P  L  :  S  Q  V  L  D  G  A  V  F  L  D  C  G  S  D  L  G  S  G  R  H  V  P   : G  N  P  A  L  R  L  G  K  P  G  N  G  I  G  F  G  Y  G  L  R  F  K  S  Q  L  G  H  F  Q  V  D  Y  A  V  N  A  F  Q  Q  R  T  V  Y  F  G  F  S  N  L  P  S  *  V  L  T  T  T  L  A  T  M  T  *  L  M  N  S  A  A  S  I  E  K  I  M  R  I  S  A  R  D  Q  M  L  G  S  E  Q  W  S  V  P  Y  R  N  S  S  E  D  F  F  L  K  T  Y  *  A  N  *  C  T  E  V  V  P  F  S  L  Y  L  F  </first_frame>
            <second_frame>  R  N  S  L  I  G  *  W  V  L  R  K  A  F  V  L  A  K  :  L  K  *  M  S  M  W  I  S  P  I  N  Y  V  L  L  *  C  S  S  L  S   : G  I  L  A  V  P  L  N  W  *  L  A   : V  F  A  *  N  T  Q  I  Y  L  A  R  A  R  S  *  M  F  C  G  I  K  D  S  M  I  P  I  S  *  L  L  I  G  S  Q  D  Q  N  G  L  L  N  S  L  L  L  F  S :   I  P  F  L  P  R  L  G  Y  M  A  Y  Q  M  T  T  S  L  D  Q  E  V  V  E  L  T  Y  L  A  Y  L  L  A  *  I  *  A  S  L  Q  V  P  T  G  A  A  R  Q  V  *  N  L  N :   I  F  V  L  *  V  M  R  V  G  Q  *  I  E  I  L  M  G  F  R  *  L  A   : V  V  A  I  M  T  V  W  *  *  L  N  R  S  L  D  T  Q  K  Q  T  I  V  V  F  L  N :   L  A  C  K  L  N  R  G  F  P  F  F  P  S  G  *  S  L  T  D  S  S  L  L  H  Q  G  D  *  N  L  G  Q  L  F  S  C  Q   : A  L  R  V  V  L  S  W  G  I  *  L  P  I  K  L  L  Q  L  A  V  L  V  A  S  E  G  M  V  K  E  L  L  V  V  V  D  L  V  W  L  L  T  M  N  *  R  F  L  * :   A  R  C  L  M  V  L  S  S  W  I  V  D  L  T  W  A  Q  V  V  M  C  P  :  E  T  L  L  L  G  L  A  N  Q  E  M  E  L  A  S  D  M  A  L  D  S  S  H  S  W  A  I  S  R  W  T  M  Q  S  M  H  F  N  N  E  L  S  T  S  A  S  V  T  S  L  R  E  S  *  P  Q  H  L  Q  P  *  H  N  L  *  T  A  L  H  P  *  R  K  L  *  G  Y  L  Q  E  I  R  C  *  G  P  S  S  G  P  S  L  I  G  T  A  V  K  I  S  F  *  K  H  I  E  Q  I  S  A  Q  R  W  F  H  F  P  C  T  S  S </second_frame>
            <third_frame>   E  T  H  *  S  A  N  G  C  S  E  K  R  S  C  W  Q  S :   *  N  R  C  Q  C  G  F  H  P  *  T  M  C  C  F  D  A  P  A  F  Q  :  E  F  W  Q  S  P  *  I  G  N  W  Q  :  S  L  H  K  T  P  K  F  I  W  Q  E  R  E  A  R  C  F  V  G  *  R  T  L  *  F  Q  Y  L  D  Y  L  S  E  A  K  T  R  M  A  C  S  T  V  F  C  C  S   : A  F  H  F  S  R  D  W  G  T  W  L  T  R  *  Q  L  L  S  I  R  K  W  W  S  *  L  I  S  L  I  C  W  L  R  F  E  R  A  C  K  F  Q  L  E  Q  Q  D  K  Y  K  I  *   : T  Y  S  S  C  K  *  *  G  S  V  N  K  *  R  Y  S  W  V  S  G  D  L  Q  :  W  W  L  *  *  Q  Y  G  S  S  *  T  G  V  S  I  R  K  S  K  R  S  *  F  F  S   : I  *  P  A  N  *  T  G  G  S  H  S  F  Q  V  A  D  L  *  P  I  Q  V  C  C  I  K  G  T  K  T  W  A  S  F  S  L  V  K  :  P  Y  G  W  F  Y  R  G  G  Y  S  S  L  S  S  F  C  N  W  R  S  W  *  R  P  R  V  W  *  R  S  C  W  L  W  *  I  L  S  G  C  *  Q  *  T  D  V  S  F   : E  P  G  A  *  W  C  C  L  L  G  L  W  I  *  L  G  L  R  S  S  C  A  R :   K  P  C  S  *  A  W  Q  T  R  K  W  N  W  L  R  I  W  P  *  I  Q  V  T  A  G  P  F  P  G  G  L  C  S  Q  C  I  S  T  T  N  C  L  L  R  L  Q  *  P  P  F  V  S  L  N  H  N  T  C  N  H  D  I  T  Y  E  Q  R  C  I  H  R  E  N  Y  E  D  I  C  K  R  S  D  V  R  V  R  A  V  V  R  P  L  *  E  Q  Q  *  R  F  L  F  E  N  I  L  S  K  L  V  H  R  G  G  S  I  F  P  V  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56701" stop="56647"/>
                    <exon start="55334" stop="55268"/>
                    <exon start="55167" stop="55132"/>
                    <exon start="54974" stop="54830"/>
                    <exon start="54393" stop="54235"/>
                    <exon start="54118" stop="54048"/>
                    <exon start="53965" stop="53887"/>
                    <exon start="53770" stop="53655"/>
                    <exon start="52496" stop="52349"/>
                    <exon start="51177" stop="51108"/>
                    <exon start="49182" stop="49025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKLINRLMGAQKSVRAGKAKIDVNVDFTHKLCAALMLQPFRNSGSPLELVIGSLCIKHPNLFGKSEKLDVLWDKGLYDSNILITYRKPRPEWLAQQSFVVQHSISPEIGVHGLPDDNFSRSGSGGVNLSRLSAGLDLSEPASSNWSSKTSIKFEHIRPVSDEGRSINRDTHGFPVTCSGGYNDSMVVVKQESRYAKANDRSFSQFSLQIEQGVPILSKWLIFNRFKFVASRGLKLGPAFLLSSLTGGSIVGDIAPYQAFAIGGLGSVRGYGEGAVGCGRSCLVANNELTFPLSQVLDGAVFLDCGSDLGSGRHVPGNPALRLGKPGNGIGFGYGLRFKSQLGHFQVDYAVNAFQQRTVYFGFSNLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58665" PGL_stop="59304"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58665" e_stop="59304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="58665" e_stop="59304" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58665" stop="59253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58666" stop="59253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58935" stop="59304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223633" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAACTTTTAATTGCAATTTTTACATTTTTCTTCTTCTTATTCTTCCTCTTATTTTTGAATCATGTTGTTTAGCAAGAGTTCAAGTTCATATTATCAACAAGCTTCCTGATGGACTGGCAATGACTCTCCATTGTCAATCTCATGACAATGATTTAGGACAGTTGAGATTGACGGGAGGTGACGAAGCTAGTTGGACTTTTAGTGTTAATTTTTGGGGCACCACTATGTTTTATTGCGACGCTCAATGGGATGATAGTTCCACAACATATCGTTTTGTTACTTATGATGCCGCTCGGGATGCCCGACGATGTCAAACGGAATGCTGGTGGATGATCTCTGAAGAAGAAACGTTATATGGTTATAATCAAGAGAGTGAATACTGGGAGTTGTTTCCCTTCACCAGTGCATAAAATCTCTTAATGATGCCTATTATCTTCGTGTGTGTTTAAAAAATTATCAATTTTTCGTATTTAAGATTAACCAAATCCAATTATCGTTACTTCGTACAATGTAAGGTTGTTCGGTGATCAACACATGTAACATGTACAAGGCAATATGATATTTATATATAGTTACTATTACTTACAATTTCATCATTGCTGCAAAATTATCTTAATATAATTATAAAGTTTGATTAA</gDNA_template>
            <first_frame> E  N  F  *  L  Q  F  L  H  F  S  S  S  Y  S  S  S  Y  F  *  I  M  L  F  S  K  S  S  S  S  Y  Y  Q  Q  A  S  *  W  T  G  N  D  S  P  L  S  I  S  *  Q  *  F  R  T  V  E  I  D  G  R  *  R  S  *  L  D  F  *  C  *  F  L  G  H  H  Y  V  L  L  R  R  S  M  G  *  *  F  H  N  I  S  F  C  Y  L  *  C  R  S  G  C  P  T  M  S  N  G  M  L  V  D  D  L  *  R  R  N  V  I  W  L  *  S  R  E  *  I  L  G  V  V  S  L  H  Q  C  I  K  S  L  N  D  A  Y  Y  L  R  V  C  L  K  N  Y  Q  F  F  V  F  K  I  N  Q  I  Q  L  S  L  L  R  T  M  *  G  C  S  V  I  N  T  C  N  M  Y  K  A  I  *  Y  L  Y  I  V  T  I  T  Y  N  F  I  I  A  A  K  L  S  *  Y  N  Y  K  V  *  L  </first_frame>
            <second_frame>  K  T  F  N  C  N  F  Y  I  F  L  L  L  I  L  P  L  I  F  E  S  C  C  L  A  R  V  Q  V  H  I  I  N  K  L  P  D  G  L  A  M  T  L  H  C  Q  S  H  D  N  D  L  G  Q  L  R  L  T  G  G  D  E  A  S  W  T  F  S  V  N  F  W  G  T  T  M  F  Y  C  D  A  Q  W  D  D  S  S  T  T  Y  R  F  V  T  Y  D  A  A  R  D  A  R  R  C  Q  T  E  C  W  W  M  I  S  E  E  E  T  L  Y  G  Y  N  Q  E  S  E  Y  W  E  L  F  P  F  T  S  A  *  N  L  L  M  M  P  I  I  F  V  C  V  *  K  I  I  N  F  S  Y  L  R  L  T  K  S  N  Y  R  Y  F  V  Q  C  K  V  V  R  *  S  T  H  V  T  C  T  R  Q  Y  D  I  Y  I  *  L  L  L  L  T  I  S  S  L  L  Q  N  Y  L  N  I  I  I  K  F  D  * </second_frame>
            <third_frame>   K  L  L  I  A  I  F  T  F  F  F  F  L  F  F  L  L  F  L  N  H  V  V  *  Q  E  F  K  F  I  L  S  T  S  F  L  M  D  W  Q  *  L  S  I  V  N  L  M  T  M  I  *  D  S  *  D  *  R  E  V  T  K  L  V  G  L  L  V  L  I  F  G  A  P  L  C  F  I  A  T  L  N  G  M  I  V  P  Q  H  I  V  L  L  L  M  M  P  L  G  M  P  D  D  V  K  R  N  A  G  G  *  S  L  K  K  K  R  Y  M  V  I  I  K  R  V  N  T  G  S  C  F  P  S  P  V  H  K  I  S  *  *  C  L  L  S  S  C  V  F  K  K  L  S  I  F  R  I  *  D  *  P  N  P  I  I  V  T  S  Y  N  V  R  L  F  G  D  Q  H  M  *  H  V  Q  G  N  M  I  F  I  Y  S  Y  Y  Y  L  Q  F  H  H  C  C  K  I  I  L  I  *  L  *  S  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58666" stop="59076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFNCNFYIFLLLILPLIFESCCLARVQVHIINKLPDGLAMTLHCQSHDNDLGQLRLTGGDEASWTFSVNFWGTTMFYCDAQWDDSSTTYRFVTYDAARDARRCQTECWWMISEEETLYGYNQESEYWELFPFTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="59269" PGL_stop="58705"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59269" e_stop="58705"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="59269" e_stop="58705" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59269" stop="58705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCAATGATGAAATTGTAAGTAATAGTAACTATATATAAATATCATATTGCCTTGTACATGTTACATGTGTTGATCACCGAACAACCTTACATTGTACGAAGTAACGATAATTGGATTTGGTTAATCTTAAATACGAAAAATTGATAATTTTTTAAACACACACGAAGATAATAGGCATCATTAAGAGATTTTATGCACTGGTGAAGGGAAACAACTCCCAGTATTCACTCTCTTGATTATAACCATATAACGTTTCTTCTTCAGAGATCATCCACCAGCATTCCGTTTGACATCGTCGGGCATCCCGAGCGGCATCATAAGTAACAAAACGATATGTTGTGGAACTATCATCCCATTGAGCGTCGCAATAAAACATAGTGGTGCCCCAAAAATTAACACTAAAAGTCCAACTAGCTTCGTCACCTCCCGTCAATCTCAACTGTCCTAAATCATTGTCATGAGATTGACAATGGAGAGTCATTGCCAGTCCATCAGGAAGCTTGTTGATAATATGAACTTGAACTCTTGCTAAACAACATGATTCAAAAATAAGAGGAAGAAT</gDNA_template>
            <first_frame> A  A  M  M  K  L  *  V  I  V  T  I  Y  K  Y  H  I  A  L  Y  M  L  H  V  L  I  T  E  Q  P  Y  I  V  R  S  N  D  N  W  I  W  L  I  L  N  T  K  N  *  *  F  F  K  H  T  R  R  *  *  A  S  L  R  D  F  M  H  W  *  R  E  T  T  P  S  I  H  S  L  D  Y  N  H  I  T  F  L  L  Q  R  S  S  T  S  I  P  F  D  I  V  G  H  P  E  R  H  H  K  *  Q  N  D  M  L  W  N  Y  H  P  I  E  R  R  N  K  T  *  W  C  P  K  N  *  H  *  K  S  N  *  L  R  H  L  P  S  I  S  T  V  L  N  H  C  H  E  I  D  N  G  E  S  L  P  V  H  Q  E  A  C  *  *  Y  E  L  E  L  L  L  N  N  M  I  Q  K  *  E  E  E  </first_frame>
            <second_frame>  Q  Q  *  *  N  C  K  *  *  *  L  Y  I  N  I  I  L  P  C  T  C  Y  M  C  *  S  P  N  N  L  T  L  Y  E  V  T  I  I  G  F  G  *  S  *  I  R  K  I  D  N  F  L  N  T  H  E  D  N  R  H  H  *  E  I  L  C  T  G  E  G  K  Q  L  P  V  F  T  L  L  I  I  T  I  *  R  F  F  F  R  D  H  P  P  A  F  R  L  T  S  S  G  I  P  S  G  I  I  S  N  K  T  I  C  C  G  T  I  I  P  L  S  V  A  I  K  H  S  G  A  P  K  I  N  T  K  S  P  T  S  F  V  T  S  R  Q  S  Q  L  S  *  I  I  V  M  R  L  T  M  E  S  H  C  Q  S  I  R  K  L  V  D  N  M  N  L  N  S  C  *  T  T  *  F  K  N  K  R  K  N </second_frame>
            <third_frame>   S  N  D  E  I  V  S  N  S  N  Y  I  *  I  S  Y  C  L  V  H  V  T  C  V  D  H  R  T  T  L  H  C  T  K  *  R  *  L  D  L  V  N  L  K  Y  E  K  L  I  I  F  *  T  H  T  K  I  I  G  I  I  K  R  F  Y  A  L  V  K  G  N  N  S  Q  Y  S  L  S  *  L  *  P  Y  N  V  S  S  S  E  I  I  H  Q  H  S  V  *  H  R  R  A  S  R  A  A  S  *  V  T  K  R  Y  V  V  E  L  S  S  H  *  A  S  Q  *  N  I  V  V  P  Q  K  L  T  L  K  V  Q  L  A  S  S  P  P  V  N  L  N  C  P  K  S  L  S  *  D  *  Q  W  R  V  I  A  S  P  S  G  S  L  L  I  I  *  T  *  T  L  A  K  Q  H  D  S  K  I  R  G  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59016" stop="58819"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFFRDHPPAFRLTSSGIPSGIISNKTICCGTIIPLSVAIKHSGAPKINTKSPTSFVTSRQSQLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="59851" PGL_stop="69320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59851" e_stop="60247"/>
            <exon e_start="64880" e_stop="64981"/>
            <exon e_start="65057" e_stop="65143"/>
            <exon e_start="65785" e_stop="65878"/>
            <exon e_start="67287" e_stop="67343"/>
            <exon e_start="67660" e_stop="67739"/>
            <exon e_start="67831" e_stop="69320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59851" e_stop="60247" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="60248" i_stop="64879" i_length="4632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64880" e_stop="64981" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.842">
            <gDNA_intron_boundary i_start="64982" i_stop="65056" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65057" e_stop="65143" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65785" e_stop="65878" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67287" e_stop="67343" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67660" e_stop="67739" e_length="80"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="67831" e_stop="69320" e_length="1490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59851" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59855" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59855" stop="60247"/>
              <exon start="64880" stop="64955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59865" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59877" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59894" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59916" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60008" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60027" stop="60247"/>
              <exon start="64880" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="67914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64917" stop="64981"/>
              <exon start="65057" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65110" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65112" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67732" stop="67739"/>
              <exon start="67831" stop="68159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67882" stop="68554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67886" stop="68559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67930" stop="68526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68142" stop="68357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68350" stop="68960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68354" stop="68826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68355" stop="69320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68355" stop="69198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68384" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="69070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68454" stop="68806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAAACAACCCTGCTGCTCCTCCGCCGCCGCCGCCTACCTTCACCGCCGTCATCTACCACCGACTACGGTGACCAAAAAGTCACAATCTTTGAATACTCATATAGTTTCTGTAACTGGGTTTTCACTTTTTTTTTTTGTTAAGCTAATTGAATTTGAAGAGAAAAGGAGTAATGGGTAAAGGAGAGAAAAGTTCGTTAGGTAGGGCACTGGTGAAGCACCATAATCAGATGATTCAGCAATCGAAAGATAAGGGTCGAGTTTATAGGAATCATAATAAGAAGGTTCTGGAATCTGTAACTGAAGTTACTGATTTAGAAGCTGTAATAGAACAGACAGATGAAGCTCACCGTCTCTATTCTGACCTTAATCCTCCTGTTAATCTTCTCGTCAATCT : GGACTCTGGCTCTAGTTCTGGTGATATGCGACCTGAAGAAAGATTGAAGCAGCAGAAGAAAGAGGAGGCTTTGCATGCTAGTAGTCTTCGCGTTCCACGCAG : GCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG : GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG : CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG : GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG : AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAACAAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAATGGGAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</gDNA_template>
            <first_frame> K  *  T  T  L  L  L  L  R  R  R  R  L  P  S  P  P  S  S  T  T  D  Y  G  D  Q  K  V  T  I  F  E  Y  S  Y  S  F  C  N  W  V  F  T  F  F  F  C  *  A  N  *  I  *  R  E  K  E  *  W  V  K  E  R  K  V  R  *  V  G  H  W  *  S  T  I  I  R  *  F  S  N  R  K  I  R  V  E  F  I  G  I  I  I  R  R  F  W  N  L  *  L  K  L  L  I  *  K  L  *  *  N  R  Q  M  K  L  T  V  S  I  L  T  L  I  L  L  L  I  F  S  S  I   : W  T  L  A  L  V  L  V  I  C  D  L  K  K  D  *  S  S  R  R  K  R  R  L  C  M  L  V  V  F  A  F  H  A   : G  P  H  G  I  L  K  C  P  W  K  S  L  I  L  M  K  D  K  L  F  *  L  G  D  A  I  L  Q   : G  L  K  R  T  R  N  W  F  S  P  L  L  K  R  T  W  I  S  G  D  S  F  G  E  L  L  S  V  V  I  C :   L  *  W  L  L  M  H  V  T  H  F  F  I  G  V  L  I  L  R :   L  M  H  *  K  S  T  N  T  K  K  Q  C  F  L  L  T  K  L  I  F  Y  P  F  L  S   : E  R  N  G  L  N  T  S  T  S  K  G  F  F  F  F  S  G  Q  L  K  L  P  L  L  L  S  V  L  Q  K  Y  Q  *  A  L  K  R  Q  V  M  L  I  R  K  Y  *  A  G  R  S  Y  W  P  A  Y  S  L  Q  Q  R  R  *  F  *  L  R  I  G  *  L  L  M  L  M  R  T  W  Q  K  M  F  S  L  E  V  *  W  W  G  L  W  G  I  L  M  L  G  K  V  Q  R  L  M  L  W  *  G  K  N  E  L  V  *  H  L  L  R  G  R  Q  S  I  S  K  H  L  *  F  L  L  N  L  L  Y  V  I  A  R  V  *  C  F  H  H  L  Q  V  R  D  M  R  *  L  H  V  V  F  C  Q  L  T  G  S  L  S  I  E  R  L  Y  R  W  W  Q  I  E  S  L  E  K  L  S  R  M  S  T  T  Y  L  C  Q  N  Q  S  H  M  S  H  S  L  A  H  L  L  L  Q  N  F  *  G  H  T  V  P  L  V  V  M  L  L  Q  A  D  C  P  M  K  Q  E  Q  H  V  R  C  *  R  I  M  L  M  E  S  C  H  T  L  K  C  L  Q  E  N  Q  T  M  K  L  V  K  R  R  M  K  L  L  Q  R  M  L  I  I  L  *  C  L  V  L  M  R  M  M  T  T  M  R  M  R  M  R  M  R  M  M  K  T  L  M  H  I  *  I  M  F  *  V  I  *  V  R  L  I  W  P  M  D  L  L  L  T  R  Q  L  V  K  R  S  P  *  L  L  P  I  N  N  I  K  R  H  K  E  R  K  T  G  H  G  E  S  R  T  V  K  V  M  G  C  Q  *  *  E  S  S  G  K  Q  Q  T  L  D  L  *  T  S  G  R  Y  Q  W  E  V  T  L  A  S  W  L  P  T  L  L  T  L  S  T  V  V  I  S  P  I  Y  Y  C  K  R  Y  I  L  H  A  Y  L  Y  N  D  G  A  V  Y  M  L  I  F  Q  V  A  L  S  L  R  E  L  K  S  E  S  *  F  V  *  N  H  L  D  *  C  C  S  D  L  L  L  P  M  I  L  L  *  T  R  R  C  S  R  K  F  V  Y  E  I  A  F  N  G  K  C  Y  I  F  R  *  D  F  S  A  *  I  *  I  N  C  F  *  Y  F  F </first_frame>
            <second_frame>  N  K  Q  P  C  C  S  S  A  A  A  A  Y  L  H  R  R  H  L  P  P  T  T  V  T  K  K  S  Q  S  L  N  T  H  I  V  S  V  T  G  F  S  L  F  F  F  V  K  L  I  E  F  E  E  K  R  S  N  G  *  R  R  E  K  F  V  R  *  G  T  G  E  A  P  *  S  D  D  S  A  I  E  R  *  G  S  S  L  *  E  S  *  *  E  G  S  G  I  C  N  *  S  Y  *  F  R  S  C  N  R  T  D  R  *  S  S  P  S  L  F  *  P  *  S  S  C  *  S  S  R  Q  S  :  G  L  W  L  *  F  W  *  Y  A  T  *  R  K  I  E  A  A  E  E  R  G  G  F  A  C  *  *  S  S  R  S  T  Q  :  A  P  M  E  Y  *  N  V  R  G  R  A  *  Y  *  *  K  T  S  F  S  S  L  A  T  Q  S  C  K  :  A  *  R  E  R  E  T  G  S  H  P  F  *  K  E  P  G  Y  L  E  T  A  L  E  S  C  *  A  *  *  S   : A  C  N  G  C  *  C  T  *  P  T  F  L  S  V  S  *  S  *   : G  L  C  T  R  S  R  P  T  Q  K  N  N  A  S  C  *  Q  S  *  S  F  T  H  F  Y  Q  :  K  E  M  G  *  I  L  P  P  A  R  D  S  F  S  F  L  V  S  *  S  C  L  C  C  S  Q  C  F  R  S  T  N  E  L  S  R  G  R  *  C  *  Y  E  N  I  R  Q  G  G  A  I  G  P  L  T  V  C  S  R  G  D  S  F  D  *  E  *  V  S  F  *  C  *  *  E  L  G  R  R  C  S  V  *  K  C  D  G  G  V  C  G  V  S  *  C  W  E  K  F  N  D  *  C  F  G  R  G  K  T  S  W  C  D  I  Y  S  G  E  D  K  A  F  P  N  T  C  D  F  S  *  T  Y  S  M  *  L  P  G  F  S  V  S  I  I  Y  K  F  E  I  *  D  D  C  M  W  C  F  A  N  *  P  D  H  *  A  S  R  G  C  T  G  G  G  K  S  S  P  *  K  N  Y  R  G  C  L  Q  H  I  S  A  K  T  K  A  I  *  A  T  V  S  P  T  Y  C  C  R  T  F  K  G  I  L  C  L  S  W  L  C  C  F  K  R  I  A  R  *  N  K  S  N  T  S  D  V  E  G  L  C  *  W  K  A  A  T  L  *  N  A  S  R  R  I  R  R  *  S  *  *  R  G  G  *  N  C  Y  R  G  C  *  *  S  Y  N  V  W  F  *  *  G  *  *  R  R  *  G  *  G  *  G  *  G  *  *  R  H  *  C  T  S  R  S  C  S  E  *  F  K  Y  V  *  Y  G  Q  W  T  C  F  *  P  D  S  S  *  K  E  A  H  N  C  S  P  *  T  T  *  K  D  T  K  K  E  R  P  V  M  E  S  P  E  R  *  R  *  W  D  A  S  S  K  S  L  Q  E  S  S  K  H  W  T  C  E  H  P  V  G  I  N  G  K  L  H  W  L  L  G  S  Q  L  C  L  P  C  Q  L  S  L  F  R  L  Y  I  T  A  S  V  I  Y  Y  T  H  I  F  T  T  M  V  R  Y  I  C  L  F  F  K  *  H  S  H  *  G  S  *  R  V  N  L  S  L  F  K  T  I  W  I  N  V  V  L  I  F  C  C  Q  *  F  F  F  E  Q  E  D  V  V  E  N  L  C  M  K  L  P  L  M  G  S  V  I  F  S  G  E  I  F  Q  H  K  Y  E  L  I  V  F  D  I  F   </second_frame>
            <third_frame>   I  N  N  P  A  A  P  P  P  P  P  P  T  F  T  A  V  I  Y  H  R  L  R  *  P  K  S  H  N  L  *  I  L  I  *  F  L  *  L  G  F  H  F  F  F  L  L  S  *  L  N  L  K  R  K  G  V  M  G  K  G  E  K  S  S  L  G  R  A  L  V  K  H  H  N  Q  M  I  Q  Q  S  K  D  K  G  R  V  Y  R  N  H  N  K  K  V  L  E  S  V  T  E  V  T  D  L  E  A  V  I  E  Q  T  D  E  A  H  R  L  Y  S  D  L  N  P  P  V  N  L  L  V  N  L :   D  S  G  S  S  S  G  D  M  R  P  E  E  R  L  K  Q  Q  K  K  E  E  A  L  H  A  S  S  L  R  V  P  R  R :   P  P  W  N  T  K  M  S  V  E  E  L  D  I  N  E  R  Q  A  F  L  A  W  R  R  N  L  A  R :   L  E  E  N  E  K  L  V  L  T  P  F  E  K  N  L  D  I  W  R  Q  L  W  R  V  V  E  R  S  D  L  :  L  V  M  V  V  D  A  R  D  P  L  F  Y  R  C  P  D  L  E  :  A  Y  A  L  E  V  D  Q  H  K  K  T  M  L  L  V  N  K  A  D  L  L  P  I  S  I  R :   K  K  W  A  E  Y  F  H  Q  Q  G  I  L  F  L  F  W  S  A  K  A  A  S  A  A  L  S  A  S  E  V  P  M  S  S  Q  E  A  G  D  A  D  T  K  I  L  G  R  E  E  L  L  A  R  L  Q  S  A  A  E  E  I  V  L  T  K  N  R  L  A  S  D  A  D  E  N  L  A  E  D  V  Q  S  R  S  V  M  V  G  F  V  G  Y  P  N  V  G  K  S  S  T  I  N  A  L  V  G  E  K  R  A  G  V  T  S  T  P  G  K  T  K  H  F  Q  T  L  V  I  S  P  K  L  T  L  C  D  C  P  G  L  V  F  P  S  F  T  S  S  R  Y  E  M  I  A  C  G  V  L  P  I  D  R  I  T  E  H  R  E  A  V  Q  V  V  A  N  R  V  P  R  K  T  I  E  D  V  Y  N  I  S  L  P  K  P  K  P  Y  E  P  Q  S  R  P  P  T  A  A  E  L  L  R  A  Y  C  A  S  R  G  Y  V  A  S  S  G  L  P  D  E  T  R  A  T  R  Q  M  L  K  D  Y  V  D  G  K  L  P  H  F  E  M  P  P  G  E  S  D  D  E  A  S  E  E  E  D  E  I  V  T  E  D  A  D  N  P  I  M  S  G  S  D  E  D  D  D  D  D  E  D  E  D  E  D  E  D  D  E  D  I  N  A  H  L  D  H  V  L  S  D  L  S  T  F  D  M  A  N  G  L  A  S  N  Q  T  A  R  K  K  K  P  I  T  A  P  H  K  Q  H  K  K  T  Q  R  K  K  D  R  S  W  R  V  Q  N  G  E  G  D  G  M  P  V  V  R  V  F  R  K  A  A  N  T  G  P  V  N  I  R  *  V  S  M  G  S  Y  T  G  F  L  A  P  N  S  A  Y  L  V  N  C  R  Y  F  A  Y  I  L  L  Q  A  L  Y  I  T  R  I  S  L  Q  R  W  C  G  I  Y  A  Y  F  S  S  S  T  L  T  K  G  V  E  E  *  I  L  V  C  L  K  P  S  G  L  M  L  F  *  S  S  V  A  N  D  S  S  L  N  K  K  M  *  *  K  I  C  V  *  N  C  L  *  W  E  V  L  Y  F  Q  V  R  F  F  S  I  N  M  N  *  L  F  L  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60000" stop="60247"/>
                    <exon start="64880" stop="64981"/>
                    <exon start="65057" stop="65143"/>
                    <exon start="65785" stop="65878"/>
                    <exon start="67287" stop="67343"/>
                    <exon start="67660" stop="67739"/>
                    <exon start="67831" stop="68956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1791</number_coding_nucleotides>
                  <number_encoded_amino_acids>597</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLKRKGVMGKGEKSSLGRALVKHHNQMIQQSKDKGRVYRNHNKKVLESVTEVTDLEAVIEQTDEAHRLYSDLNPPVNLLVNLDSGSSSGDMRPEERLKQQKKEEALHASSLRVPRRPPWNTKMSVEELDINERQAFLAWRRNLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYALEVDQHKKTMLLVNKADLLPISIRKKWAEYFHQQGILFLFWSAKAASAALSASEVPMSSQEAGDADTKILGREELLARLQSAAEEIVLTKNRLASDADENLAEDVQSRSVMVGFVGYPNVGKSSTINALVGEKRAGVTSTPGKTKHFQTLVISPKLTLCDCPGLVFPSFTSSRYEMIACGVLPIDRITEHREAVQVVANRVPRKTIEDVYNISLPKPKPYEPQSRPPTAAELLRAYCASRGYVASSGLPDETRATRQMLKDYVDGKLPHFEMPPGESDDEASEEEDEIVTEDADNPIMSGSDEDDDDDEDEDEDEDDEDINAHLDHVLSDLSTFDMANGLASNQTARKKKPITAPHKQHKKTQRKKDRSWRVQNGEGDGMPVVRVFRKAANTGPVNIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68946" stop="69143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSGRYQWEVTLASWLPTLLTLSTVVISPIYYCKRYILHAYLYNDGAVYMLIFQVALSLRELKSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65053" e_stop="65143"/>
            <exon e_start="65785" e_stop="65878"/>
            <exon e_start="67287" e_stop="67343"/>
            <exon e_start="67660" e_stop="67739"/>
            <exon e_start="67831" e_stop="69320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.954" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="65053" e_stop="65143" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65144" i_stop="65784" i_length="641"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65785" e_stop="65878" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.954" acc_prob="0.981">
            <gDNA_intron_boundary i_start="65879" i_stop="67286" i_length="1408"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67287" e_stop="67343" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67344" i_stop="67659" i_length="316"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67660" e_stop="67739" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67740" i_stop="67830" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="67831" e_stop="69320" e_length="1490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65053" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="67878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65110" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65112" stop="65143"/>
              <exon start="65785" stop="65878"/>
              <exon start="67287" stop="67343"/>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67660" stop="67739"/>
              <exon start="67831" stop="68512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67732" stop="67739"/>
              <exon start="67831" stop="68159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67882" stop="68554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67886" stop="68559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67930" stop="68526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67945" stop="68704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68142" stop="68357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68350" stop="68960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68354" stop="68826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68355" stop="69320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68355" stop="69198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68384" stop="68984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68427" stop="69070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68454" stop="68806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGGCCCCCATGGAATACTAAAATGTCCGTGGAAGAGCTTGATATTAATGAAAGACAAGCTTTTCTAGCTTGGCGACGCAATCTTGCAAG : GCTTGAAGAGAACGAGAAACTGGTTCTCACCCCTTTTGAAAAGAACCTGGATATCTGGAGACAGCTTTGGAGAGTTGTTGAGCGTAGTGATCTG : CTTGTAATGGTTGTTGATGCACGTGACCCACTTTTTTATCGGTGTCCTGATCTTGAG : GCTTATGCACTAGAAGTCGACCAACACAAAAAAACAATGCTTCTTGTTAACAAAGCTGATCTTTTACCCATTTCTATCAG : AAAGAAATGGGCTGAATACTTCCACCAGCAAGGGATTCTTTTTCTTTTCTGGTCAGCTAAAGCTGCCTCTGCTGCTCTCAGTGCTTCAGAAGTACCAATGAGCTCTCAAGAGGCAGGTGATGCTGATACGAAAATATTAGGCAGGGAGGAGCTATTGGCCCGCTTACAGTCTGCAGCAGAGGAGATAGTTTTGACTAAGAATAGGTTAGCTTCTGATGCTGATGAGAACTTGGCAGAAGATGTTCAGTCTAGAAGTGTGATGGTGGGGTTTGTGGGGTATCCTAATGTTGGGAAAAGTTCAACGATTAATGCTTTGGTAGGGGAAAAACGAGCTGGTGTGACATCTACTCCGGGGAAGACAAAGCATTTCCAAACACTTGTGATTTCTCCTAAACTTACTCTATGTGATTGCCCGGGTTTAGTGTTTCCATCATTTACAAGTTCGAGATATGAGATGATTGCATGTGGTGTTTTGCCAATTGACCGGATCACTGAGCATCGAGAGGCTGTACAGGTGGTGGCAAATCGAGTCCCTAGAAAAACTATCGAGGATGTCTACAACATATCTCTGCCAAAACCAAAGCCATATGAGCCACAGTCTCGCCCACCTACTGCTGCAGAACTTTTAAGGGCATACTGTGCCTCTCGTGGTTATGTTGCTTCAAGCGGATTGCCCGATGAAACAAGAGCAACACGTCAGATGTTGAAGGATTATGTTGATGGAAAGCTGCCACACTTTGAAATGCCTCCAGGAGAATCAGACGATGAAGCTAGTGAAGAGGAGGATGAAATTGTTACAGAGGATGCTGATAATCCTATAATGTCTGGTTCTGATGAGGATGATGACGACGATGAGGATGAGGATGAGGATGAGGATGATGAAGACATTAATGCACATCTAGATCATGTTCTGAGTGATTTAAGTACGTTTGATATGGCCAATGGACTTGCTTCTAACCAGACAGCTCGTAAAAAGAAGCCCATAACTGCTCCCCATAAACAACATAAAAAGACACAAAGAAAGAAAGACCGGTCATGGAGAGTCCAGAACGGTGAAGGTGATGGGATGCCAGTAGTAAGAGTCTTCAGGAAAGCAGCAAACACTGGACCTGTGAACATCCGGTAGGTATCAATGGGAAGTTACACTGGCTTCTTGGCTCCCAACTCTGCTTACCTTGTCAACTGTCGTTATTTCGCCTATATATTACTGCAAGCGTTATATATTACACGCATATCTTTACAACGATGGTGCGGTATATATGCTTATTTTTCAAGTAGCACTCTCACTAAGGGAGTTGAAGAGTGAATCTTAGTTTGTTTAAAACCATCTGGATTAATGTTGTTCTGATCTTCTGTTGCCAATGATTCTTCTTTGAACAAGAAGATGTAGTAGAAAATTTGTGTATGAAATTGCCTTTAATGGGAAGTGTTATATTTTCAGGTGAGATTTTTCAGCATAAATATGAATTAATTGTTTTTGATATTTTTTT</gDNA_template>
            <first_frame> P  G  P  H  G  I  L  K  C  P  W  K  S  L  I  L  M  K  D  K  L  F  *  L  G  D  A  I  L  Q   : G  L  K  R  T  R  N  W  F  S  P  L  L  K  R  T  W  I  S  G  D  S  F  G  E  L  L  S  V  V  I  C :   L  *  W  L  L  M  H  V  T  H  F  F  I  G  V  L  I  L  R :   L  M  H  *  K  S  T  N  T  K  K  Q  C  F  L  L  T  K  L  I  F  Y  P  F  L  S   : E  R  N  G  L  N  T  S  T  S  K  G  F  F  F  F  S  G  Q  L  K  L  P  L  L  L  S  V  L  Q  K  Y  Q  *  A  L  K  R  Q  V  M  L  I  R  K  Y  *  A  G  R  S  Y  W  P  A  Y  S  L  Q  Q  R  R  *  F  *  L  R  I  G  *  L  L  M  L  M  R  T  W  Q  K  M  F  S  L  E  V  *  W  W  G  L  W  G  I  L  M  L  G  K  V  Q  R  L  M  L  W  *  G  K  N  E  L  V  *  H  L  L  R  G  R  Q  S  I  S  K  H  L  *  F  L  L  N  L  L  Y  V  I  A  R  V  *  C  F  H  H  L  Q  V  R  D  M  R  *  L  H  V  V  F  C  Q  L  T  G  S  L  S  I  E  R  L  Y  R  W  W  Q  I  E  S  L  E  K  L  S  R  M  S  T  T  Y  L  C  Q  N  Q  S  H  M  S  H  S  L  A  H  L  L  L  Q  N  F  *  G  H  T  V  P  L  V  V  M  L  L  Q  A  D  C  P  M  K  Q  E  Q  H  V  R  C  *  R  I  M  L  M  E  S  C  H  T  L  K  C  L  Q  E  N  Q  T  M  K  L  V  K  R  R  M  K  L  L  Q  R  M  L  I  I  L  *  C  L  V  L  M  R  M  M  T  T  M  R  M  R  M  R  M  R  M  M  K  T  L  M  H  I  *  I  M  F  *  V  I  *  V  R  L  I  W  P  M  D  L  L  L  T  R  Q  L  V  K  R  S  P  *  L  L  P  I  N  N  I  K  R  H  K  E  R  K  T  G  H  G  E  S  R  T  V  K  V  M  G  C  Q  *  *  E  S  S  G  K  Q  Q  T  L  D  L  *  T  S  G  R  Y  Q  W  E  V  T  L  A  S  W  L  P  T  L  L  T  L  S  T  V  V  I  S  P  I  Y  Y  C  K  R  Y  I  L  H  A  Y  L  Y  N  D  G  A  V  Y  M  L  I  F  Q  V  A  L  S  L  R  E  L  K  S  E  S  *  F  V  *  N  H  L  D  *  C  C  S  D  L  L  L  P  M  I  L  L  *  T  R  R  C  S  R  K  F  V  Y  E  I  A  F  N  G  K  C  Y  I  F  R  *  D  F  S  A  *  I  *  I  N  C  F  *  Y  F  F </first_frame>
            <second_frame>  Q  A  P  M  E  Y  *  N  V  R  G  R  A  *  Y  *  *  K  T  S  F  S  S  L  A  T  Q  S  C  K  :  A  *  R  E  R  E  T  G  S  H  P  F  *  K  E  P  G  Y  L  E  T  A  L  E  S  C  *  A  *  *  S   : A  C  N  G  C  *  C  T  *  P  T  F  L  S  V  S  *  S  *   : G  L  C  T  R  S  R  P  T  Q  K  N  N  A  S  C  *  Q  S  *  S  F  T  H  F  Y  Q  :  K  E  M  G  *  I  L  P  P  A  R  D  S  F  S  F  L  V  S  *  S  C  L  C  C  S  Q  C  F  R  S  T  N  E  L  S  R  G  R  *  C  *  Y  E  N  I  R  Q  G  G  A  I  G  P  L  T  V  C  S  R  G  D  S  F  D  *  E  *  V  S  F  *  C  *  *  E  L  G  R  R  C  S  V  *  K  C  D  G  G  V  C  G  V  S  *  C  W  E  K  F  N  D  *  C  F  G  R  G  K  T  S  W  C  D  I  Y  S  G  E  D  K  A  F  P  N  T  C  D  F  S  *  T  Y  S  M  *  L  P  G  F  S  V  S  I  I  Y  K  F  E  I  *  D  D  C  M  W  C  F  A  N  *  P  D  H  *  A  S  R  G  C  T  G  G  G  K  S  S  P  *  K  N  Y  R  G  C  L  Q  H  I  S  A  K  T  K  A  I  *  A  T  V  S  P  T  Y  C  C  R  T  F  K  G  I  L  C  L  S  W  L  C  C  F  K  R  I  A  R  *  N  K  S  N  T  S  D  V  E  G  L  C  *  W  K  A  A  T  L  *  N  A  S  R  R  I  R  R  *  S  *  *  R  G  G  *  N  C  Y  R  G  C  *  *  S  Y  N  V  W  F  *  *  G  *  *  R  R  *  G  *  G  *  G  *  G  *  *  R  H  *  C  T  S  R  S  C  S  E  *  F  K  Y  V  *  Y  G  Q  W  T  C  F  *  P  D  S  S  *  K  E  A  H  N  C  S  P  *  T  T  *  K  D  T  K  K  E  R  P  V  M  E  S  P  E  R  *  R  *  W  D  A  S  S  K  S  L  Q  E  S  S  K  H  W  T  C  E  H  P  V  G  I  N  G  K  L  H  W  L  L  G  S  Q  L  C  L  P  C  Q  L  S  L  F  R  L  Y  I  T  A  S  V  I  Y  Y  T  H  I  F  T  T  M  V  R  Y  I  C  L  F  F  K  *  H  S  H  *  G  S  *  R  V  N  L  S  L  F  K  T  I  W  I  N  V  V  L  I  F  C  C  Q  *  F  F  F  E  Q  E  D  V  V  E  N  L  C  M  K  L  P  L  M  G  S  V  I  F  S  G  E  I  F  Q  H  K  Y  E  L  I  V  F  D  I  F   </second_frame>
            <third_frame>   R  P  P  W  N  T  K  M  S  V  E  E  L  D  I  N  E  R  Q  A  F  L  A  W  R  R  N  L  A  R :   L  E  E  N  E  K  L  V  L  T  P  F  E  K  N  L  D  I  W  R  Q  L  W  R  V  V  E  R  S  D  L  :  L  V  M  V  V  D  A  R  D  P  L  F  Y  R  C  P  D  L  E  :  A  Y  A  L  E  V  D  Q  H  K  K  T  M  L  L  V  N  K  A  D  L  L  P  I  S  I  R :   K  K  W  A  E  Y  F  H  Q  Q  G  I  L  F  L  F  W  S  A  K  A  A  S  A  A  L  S  A  S  E  V  P  M  S  S  Q  E  A  G  D  A  D  T  K  I  L  G  R  E  E  L  L  A  R  L  Q  S  A  A  E  E  I  V  L  T  K  N  R  L  A  S  D  A  D  E  N  L  A  E  D  V  Q  S  R  S  V  M  V  G  F  V  G  Y  P  N  V  G  K  S  S  T  I  N  A  L  V  G  E  K  R  A  G  V  T  S  T  P  G  K  T  K  H  F  Q  T  L  V  I  S  P  K  L  T  L  C  D  C  P  G  L  V  F  P  S  F  T  S  S  R  Y  E  M  I  A  C  G  V  L  P  I  D  R  I  T  E  H  R  E  A  V  Q  V  V  A  N  R  V  P  R  K  T  I  E  D  V  Y  N  I  S  L  P  K  P  K  P  Y  E  P  Q  S  R  P  P  T  A  A  E  L  L  R  A  Y  C  A  S  R  G  Y  V  A  S  S  G  L  P  D  E  T  R  A  T  R  Q  M  L  K  D  Y  V  D  G  K  L  P  H  F  E  M  P  P  G  E  S  D  D  E  A  S  E  E  E  D  E  I  V  T  E  D  A  D  N  P  I  M  S  G  S  D  E  D  D  D  D  D  E  D  E  D  E  D  E  D  D  E  D  I  N  A  H  L  D  H  V  L  S  D  L  S  T  F  D  M  A  N  G  L  A  S  N  Q  T  A  R  K  K  K  P  I  T  A  P  H  K  Q  H  K  K  T  Q  R  K  K  D  R  S  W  R  V  Q  N  G  E  G  D  G  M  P  V  V  R  V  F  R  K  A  A  N  T  G  P  V  N  I  R  *  V  S  M  G  S  Y  T  G  F  L  A  P  N  S  A  Y  L  V  N  C  R  Y  F  A  Y  I  L  L  Q  A  L  Y  I  T  R  I  S  L  Q  R  W  C  G  I  Y  A  Y  F  S  S  S  T  L  T  K  G  V  E  E  *  I  L  V  C  L  K  P  S  G  L  M  L  F  *  S  S  V  A  N  D  S  S  L  N  K  K  M  *  *  K  I  C  V  *  N  C  L  *  W  E  V  L  Y  F  Q  V  R  F  F  S  I  N  M  N  *  L  F  L  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65055" stop="65143"/>
                    <exon start="65785" stop="65878"/>
                    <exon start="67287" stop="67343"/>
                    <exon start="67660" stop="67739"/>
                    <exon start="67831" stop="68956"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1443</number_coding_nucleotides>
                  <number_encoded_amino_acids>481</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPPWNTKMSVEELDINERQAFLAWRRNLARLEENEKLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYALEVDQHKKTMLLVNKADLLPISIRKKWAEYFHQQGILFLFWSAKAASAALSASEVPMSSQEAGDADTKILGREELLARLQSAAEEIVLTKNRLASDADENLAEDVQSRSVMVGFVGYPNVGKSSTINALVGEKRAGVTSTPGKTKHFQTLVISPKLTLCDCPGLVFPSFTSSRYEMIACGVLPIDRITEHREAVQVVANRVPRKTIEDVYNISLPKPKPYEPQSRPPTAAELLRAYCASRGYVASSGLPDETRATRQMLKDYVDGKLPHFEMPPGESDDEASEEEDEIVTEDADNPIMSGSDEDDDDDEDEDEDEDDEDINAHLDHVLSDLSTFDMANGLASNQTARKKKPITAPHKQHKKTQRKKDRSWRVQNGEGDGMPVVRVFRKAANTGPVNIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68946" stop="69143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSGRYQWEVTLASWLPTLLTLSTVVISPIYYCKRYILHAYLYNDGAVYMLIFQVALSLRELKSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60755" e_stop="61530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="60755" e_stop="61530" e_length="776"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60755" stop="61414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60760" stop="61530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621839" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61106" stop="61342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAACTTTCAAGTGCAATTTTTACATTATTTTTCTCCTGTTTTTTCTTTATGTACTTACTTTTGGATCATGTTCTTTAGCAAGAGGGATTAGTATACATTTGCCAGGGAACAGAAGAGTCCAAGTACATGTTATTAATAGGCTACCAGATGGAATTCCCATGACTCTCCATTGTCATTCTCATGACAATGACCTAGGGCAATCAATATTGGAAGAAGATGATGAATTTAATTGGAATTTTAGAGTTAATCTTTGGGGTACTACTTTATTTTATTGTGACGTTCAATGGGACAGCGATGATTCCATTTGGAACCATTTTAATGCCTATGATGCCGATAGGGACTATCGACGGTGTCGGTCGGAATGTTGGTGGATGATCTCACAAGAACAGTTGTTGTATGGTTATAATCAAGAGAGTGGATACTGGGAATTGTTTCCCTTCACCAATGCATGAATACTCTTAATGGCGCTTATTCCCCTTGCGTGTTGTTTAAAAATTATAGTTTTTTCATGTTCGAAACAAGAACTAATTGTCATGTCCAACTTACCTACATGTTTTGTATATATATGCTTTAGTTATGTGTGATCTCATAGGTCAATCAGAACTTGAAGACAACCATTATTGTCCATGTTTTGGCTTTCAATGAGATTAATTTCTTAGGTTTTACCGTCTTTTTGACTTTTTTCATTGATAAAAAAAAATGTGATATTGCACCTTGTAGTGCTAAAAAAATTACATTTAGTGAACAAAGAAAAGTAAACATGAACCATGCAT</gDNA_template>
            <first_frame> *  K  L  S  S  A  I  F  T  L  F  F  S  C  F  F  F  M  Y  L  L  L  D  H  V  L  *  Q  E  G  L  V  Y  I  C  Q  G  T  E  E  S  K  Y  M  L  L  I  G  Y  Q  M  E  F  P  *  L  S  I  V  I  L  M  T  M  T  *  G  N  Q  Y  W  K  K  M  M  N  L  I  G  I  L  E  L  I  F  G  V  L  L  Y  F  I  V  T  F  N  G  T  A  M  I  P  F  G  T  I  L  M  P  M  M  P  I  G  T  I  D  G  V  G  R  N  V  G  G  *  S  H  K  N  S  C  C  M  V  I  I  K  R  V  D  T  G  N  C  F  P  S  P  M  H  E  Y  S  *  W  R  L  F  P  L  R  V  V  *  K  L  *  F  F  H  V  R  N  K  N  *  L  S  C  P  T  Y  L  H  V  L  Y  I  Y  A  L  V  M  C  D  L  I  G  Q  S  E  L  E  D  N  H  Y  C  P  C  F  G  F  Q  *  D  *  F  L  R  F  Y  R  L  F  D  F  F  H  *  *  K  K  M  *  Y  C  T  L  *  C  *  K  N  Y  I  *  *  T  K  K  S  K  H  E  P  C   </first_frame>
            <second_frame>  E  N  F  Q  V  Q  F  L  H  Y  F  S  P  V  F  S  L  C  T  Y  F  W  I  M  F  F  S  K  R  D  *  Y  T  F  A  R  E  Q  K  S  P  S  T  C  Y  *  *  A  T  R  W  N  S  H  D  S  P  L  S  F  S  *  Q  *  P  R  A  I  N  I  G  R  R  *  *  I  *  L  E  F  *  S  *  S  L  G  Y  Y  F  I  L  L  *  R  S  M  G  Q  R  *  F  H  L  E  P  F  *  C  L  *  C  R  *  G  L  S  T  V  S  V  G  M  L  V  D  D  L  T  R  T  V  V  V  W  L  *  S  R  E  W  I  L  G  I  V  S  L  H  Q  C  M  N  T  L  N  G  A  Y  S  P  C  V  L  F  K  N  Y  S  F  F  M  F  E  T  R  T  N  C  H  V  Q  L  T  Y  M  F  C  I  Y  M  L  *  L  C  V  I  S  *  V  N  Q  N  L  K  T  T  I  I  V  H  V  L  A  F  N  E  I  N  F  L  G  F  T  V  F  L  T  F  F  I  D  K  K  K  C  D  I  A  P  C  S  A  K  K  I  T  F  S  E  Q  R  K  V  N  M  N  H  A  </second_frame>
            <third_frame>   K  T  F  K  C  N  F  Y  I  I  F  L  L  F  F  L  Y  V  L  T  F  G  S  C  S  L  A  R  G  I  S  I  H  L  P  G  N  R  R  V  Q  V  H  V  I  N  R  L  P  D  G  I  P  M  T  L  H  C  H  S  H  D  N  D  L  G  Q  S  I  L  E  E  D  D  E  F  N  W  N  F  R  V  N  L  W  G  T  T  L  F  Y  C  D  V  Q  W  D  S  D  D  S  I  W  N  H  F  N  A  Y  D  A  D  R  D  Y  R  R  C  R  S  E  C  W  W  M  I  S  Q  E  Q  L  L  Y  G  Y  N  Q  E  S  G  Y  W  E  L  F  P  F  T  N  A  *  I  L  L  M  A  L  I  P  L  A  C  C  L  K  I  I  V  F  S  C  S  K  Q  E  L  I  V  M  S  N  L  P  T  C  F  V  Y  I  C  F  S  Y  V  *  S  H  R  S  I  R  T  *  R  Q  P  L  L  S  M  F  W  L  S  M  R  L  I  S  *  V  L  P  S  F  *  L  F  S  L  I  K  K  N  V  I  L  H  L  V  V  L  K  K  L  H  L  V  N  K  E  K  *  T  *  T  M  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60757" stop="61209"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTFKCNFYIIFLLFFLYVLTFGSCSLARGISIHLPGNRRVQVHVINRLPDGIPMTLHCHSHDNDLGQSILEEDDEFNWNFRVNLWGTTLFYCDVQWDSDDSIWNHFNAYDADRDYRRCRSECWWMISQEQLLYGYNQESGYWELFPFTNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62371" e_stop="62883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="62371" e_stop="62883" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62371" stop="62883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACTGGATGAGGTTGGGACTTCTTTTTTGTCAACATTTCGTAGTGTCATGGTTATATCGAAGCCAAGATCAATTCGTGGTAATTTTCTCAGGTGCAACATAGAAGAATCTTAGAGTAGAAGAACAAAATGAAAAAATGCAGAATAAGTGCCCTTTTTTTCCCCATTCGGAACAATTACCTTACTGTTCTGTTTTTTCAGCTGTGAGCCGTTCATTTTAGCTGAACTATAGAGTGAAAGGGGTTTGAATCGTTGTTACAATCATATGCATCATTTTCAATGAGGCCAAGAGGCCAAGTCTAGCACTGCTGACAACTTGTTTTGCCATGTTAAATAGTTATGGGATGGTAAAGGAAGGATTTGCTATCGCAAAAATCCATACTAAAGGAAGGAGTCCCTTTTTCCATGGCACAGCCTCAGTTGCTTTGATGGAATGCTTACATGAAAGGCTTAATTGAGTGTTGCGGGTAGAATTGCTGTATGAGGAGTCCACTTAAAATAAAAGGAAACAAAA</gDNA_template>
            <first_frame> V  L  D  E  V  G  T  S  F  L  S  T  F  R  S  V  M  V  I  S  K  P  R  S  I  R  G  N  F  L  R  C  N  I  E  E  S  *  S  R  R  T  K  *  K  N  A  E  *  V  P  F  F  S  P  F  G  T  I  T  L  L  F  C  F  F  S  C  E  P  F  I  L  A  E  L  *  S  E  R  G  L  N  R  C  Y  N  H  M  H  H  F  Q  *  G  Q  E  A  K  S  S  T  A  D  N  L  F  C  H  V  K  *  L  W  D  G  K  G  R  I  C  Y  R  K  N  P  Y  *  R  K  E  S  L  F  P  W  H  S  L  S  C  F  D  G  M  L  T  *  K  A  *  L  S  V  A  G  R  I  A  V  *  G  V  H  L  K  *  K  E  T  K </first_frame>
            <second_frame>  Y  W  M  R  L  G  L  L  F  C  Q  H  F  V  V  S  W  L  Y  R  S  Q  D  Q  F  V  V  I  F  S  G  A  T  *  K  N  L  R  V  E  E  Q  N  E  K  M  Q  N  K  C  P  F  F  P  H  S  E  Q  L  P  Y  C  S  V  F  S  A  V  S  R  S  F  *  L  N  Y  R  V  K  G  V  *  I  V  V  T  I  I  C  I  I  F  N  E  A  K  R  P  S  L  A  L  L  T  T  C  F  A  M  L  N  S  Y  G  M  V  K  E  G  F  A  I  A  K  I  H  T  K  G  R  S  P  F  F  H  G  T  A  S  V  A  L  M  E  C  L  H  E  R  L  N  *  V  L  R  V  E  L  L  Y  E  E  S  T  *  N  K  R  K  Q   </second_frame>
            <third_frame>   T  G  *  G  W  D  F  F  F  V  N  I  S  *  C  H  G  Y  I  E  A  K  I  N  S  W  *  F  S  Q  V  Q  H  R  R  I  L  E  *  K  N  K  M  K  K  C  R  I  S  A  L  F  F  P  I  R  N  N  Y  L  T  V  L  F  F  Q  L  *  A  V  H  F  S  *  T  I  E  *  K  G  F  E  S  L  L  Q  S  Y  A  S  F  S  M  R  P  R  G  Q  V  *  H  C  *  Q  L  V  L  P  C  *  I  V  M  G  W  *  R  K  D  L  L  S  Q  K  S  I  L  K  E  G  V  P  F  S  M  A  Q  P  Q  L  L  *  W  N  A  Y  M  K  G  L  I  E  C  C  G  *  N  C  C  M  R  S  P  L  K  I  K  G  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62618" stop="62827"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVVTIICIIFNEAKRPSLALLTTCFAMLNSYGMVKEGFAIAKIHTKGRSPFFHGTASVALMECLHERLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71382" PGL_stop="81087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76957" e_stop="77069"/>
            <exon e_start="78888" e_stop="78972"/>
            <exon e_start="79058" e_stop="79156"/>
            <exon e_start="79233" e_stop="79432"/>
            <exon e_start="79509" e_stop="79584"/>
            <exon e_start="80222" e_stop="80357"/>
            <exon e_start="80447" e_stop="80583"/>
            <exon e_start="80665" e_stop="81087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="76957" e_stop="77069" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="77070" i_stop="78887" i_length="1818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78888" e_stop="78972" e_length="85"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.823">
            <gDNA_intron_boundary i_start="78973" i_stop="79057" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79058" e_stop="79156" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.892">
            <gDNA_intron_boundary i_start="79157" i_stop="79232" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79233" e_stop="79432" e_length="200"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="79433" i_stop="79508" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79509" e_stop="79584" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="79585" i_stop="80221" i_length="637"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80222" e_stop="80357" e_length="136"/>
          </exon>
          <intron i_serial="6" don_prob="0.844" acc_prob="0.904">
            <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="80447" e_stop="80583" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="80665" e_stop="81087" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76957" stop="77069"/>
              <exon start="78888" stop="78972"/>
              <exon start="79058" stop="79156"/>
              <exon start="79233" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76996" stop="77069"/>
              <exon start="78888" stop="78972"/>
              <exon start="79058" stop="79156"/>
              <exon start="79233" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78888" stop="78972"/>
              <exon start="79058" stop="79156"/>
              <exon start="79233" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78911" stop="78972"/>
              <exon start="79058" stop="79156"/>
              <exon start="79233" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79239" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79424" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80583"/>
              <exon start="80665" stop="80962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79424" stop="79432"/>
              <exon start="79509" stop="79584"/>
              <exon start="80222" stop="80357"/>
              <exon start="80447" stop="80583"/>
              <exon start="80665" stop="80852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80490" stop="80583"/>
              <exon start="80665" stop="81087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369786" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATTACAGCTAAGGGCTCCTATTAAGATATTTGGTGACTTACATGGGCAATTTGGGGATCTCATGCGTCTTTTTGACGAGTATGGTTCCCCGTCAACTGCTGGGGATATTGC : GTATATTGATTACCTCTTCTTGGGAGATTATGTTGATAGGGGCCAGCACAGCTTGGAGACCATTACCCTTCTCCTTGCATTAAAG : GTCGAGTATCCTTACAATATACATTTAATACGTGGGAACCATGAAGCTTCAGATATAAATGCGCTCTTTGGCTTTCGAATTGAGTGCATTGAACGCCTG : GGTGAGAGAGATGGAATCTGGGCATGGCATCGGATTAATAGATTGTTTAACTGGCTTCCTCTGGCTGCCCTGATCGAGAAAAAAATCATCTGTATGCATGGTGGGATTGGAAGGTCCATTAATCACGTTGAGCAAATAGAGAGTATCCAGCGTCCTATCACTATGGAAGCTGGCTCAATCGTTCTGATGGATTTGTTGTG : GTCTGACCCAACAGAAAATGATAGTGTTGAAGGACTAAGACCAAATGCAAGAGGCCCTGGCTTGGTAACTTTTGGG : CCCGATCGTGTGATGGAGTTTTGCAACAACAATGATCTTCAACTAATAGTCCGAGCCCACGAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG : GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG : GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAGGTTCTTTTGCTTGGACTTAGATTCTTTTCCTATACTTTGAGCTTCATGCTCTTAACATCTGGGATTTCCAGTGATATGTACATAGGCATGAAGCCATTTGTGGAGACAAATATATCCCTCTTTGAAGATCTATAAGGCTTTTTGAGGCACTCAGTACAATACACAACAACAGCCCTTCAGACAGATTGCAGGCACAGAAGCAGTCAAAAGTTTCCCATTGTACATTGACAAACAAAATCATATCATCATGTATTACTAGAAGTGGGAACAAAAAAAAAAAGTTAACGGTTTTACCCCTATTAAATTATTTTTTATAAAAAATTAGTTAATTAAATAATTACATGTTTCTAAAAAATTTA</gDNA_template>
            <first_frame> V  L  Q  L  R  A  P  I  K  I  F  G  D  L  H  G  Q  F  G  D  L  M  R  L  F  D  E  Y  G  S  P  S  T  A  G  D  I  A :   Y  I  D  Y  L  F  L  G  D  Y  V  D  R  G  Q  H  S  L  E  T  I  T  L  L  L  A  L  K  :  V  E  Y  P  Y  N  I  H  L  I  R  G  N  H  E  A  S  D  I  N  A  L  F  G  F  R  I  E  C  I  E  R  L  :  G  E  R  D  G  I  W  A  W  H  R  I  N  R  L  F  N  W  L  P  L  A  A  L  I  E  K  K  I  I  C  M  H  G  G  I  G  R  S  I  N  H  V  E  Q  I  E  S  I  Q  R  P  I  T  M  E  A  G  S  I  V  L  M  D  L  L  W :   S  D  P  T  E  N  D  S  V  E  G  L  R  P  N  A  R  G  P  G  L  V  T  F  G  :  P  D  R  V  M  E  F  C  N  N  N  D  L  Q  L  I  V  R  A  H  E  C  V  M  D  G  F  E  R  F  A  Q  G  H  L  I  T  L  F  S  A  T  N  Y  C   : G  T  A  N  N  A  G  A  I  L  V  L  G  R  D  L  V  V  V  P  K  L  I  H  P  I  P  P  V  S  S  P  E  N  S  P  E  R  H  I  E  D  T  W  M  Q  :  E  L  N  A  N  R  P  P  T  P  T  R  G  R  P  Q  V  A  N  D  R  G  S  F  A  W  T  *  I  L  F  L  Y  F  E  L  H  A  L  N  I  W  D  F  Q  *  Y  V  H  R  H  E  A  I  C  G  D  K  Y  I  P  L  *  R  S  I  R  L  F  E  A  L  S  T  I  H  N  N  S  P  S  D  R  L  Q  A  Q  K  Q  S  K  V  S  H  C  T  L  T  N  K  I  I  S  S  C  I  T  R  S  G  N  K  K  K  K  L  T  V  L  P  L  L  N  Y  F  L  *  K  I  S  *  L  N  N  Y  M  F  L  K  N  L </first_frame>
            <second_frame>  Y  Y  S  *  G  L  L  L  R  Y  L  V  T  Y  M  G  N  L  G  I  S  C  V  F  L  T  S  M  V  P  R  Q  L  L  G  I  L   : R  I  L  I  T  S  S  W  E  I  M  L  I  G  A  S  T  A  W  R  P  L  P  F  S  L  H  *  R :   S  S  I  L  T  I  Y  I  *  Y  V  G  T  M  K  L  Q  I  *  M  R  S  L  A  F  E  L  S  A  L  N  A  W :   V  R  E  M  E  S  G  H  G  I  G  L  I  D  C  L  T  G  F  L  W  L  P  *  S  R  K  K  S  S  V  C  M  V  G  L  E  G  P  L  I  T  L  S  K  *  R  V  S  S  V  L  S  L  W  K  L  A  Q  S  F  *  W  I  C  C   : G  L  T  Q  Q  K  M  I  V  L  K  D  *  D  Q  M  Q  E  A  L  A  W  *  L  L  G :   P  I  V  *  W  S  F  A  T  T  M  I  F  N  *  *  S  E  P  T  N  A  *  W  M  A  L  K  D  L  L  R  G  I  *  L  R  F  F  Q  P  P  I  T  A  :  V  L  L  T  M  L  V  P  F  *  Y  W  V  E  I  L  L  W  F  Q  N  L  S  T  Q  F  R  Q  F  H  R  L  K  I  H  L  N  G  I  *  K  T  L  G  C  R :   S  *  M  L  T  D  P  L  H  Q  P  E  A  V  P  K  L  R  T  I  E  V  L  L  L  G  L  R  F  F  S  Y  T  L  S  F  M  L  L  T  S  G  I  S  S  D  M  Y  I  G  M  K  P  F  V  E  T  N  I  S  L  F  E  D  L  *  G  F  L  R  H  S  V  Q  Y  T  T  T  A  L  Q  T  D  C  R  H  R  S  S  Q  K  F  P  I  V  H  *  Q  T  K  S  Y  H  H  V  L  L  E  V  G  T  K  K  K  S  *  R  F  Y  P  Y  *  I  I  F  Y  K  K  L  V  N  *  I  I  T  C  F  *  K  I   </second_frame>
            <third_frame>   I  T  A  K  G  S  Y  *  D  I  W  *  L  T  W  A  I  W  G  S  H  A  S  F  *  R  V  W  F  P  V  N  C  W  G  Y  C  :  V  Y  *  L  P  L  L  G  R  L  C  *  *  G  P  A  Q  L  G  D  H  Y  P  S  P  C  I  K   : G  R  V  S  L  Q  Y  T  F  N  T  W  E  P  *  S  F  R  Y  K  C  A  L  W  L  S  N  *  V  H  *  T  P   : G  *  E  R  W  N  L  G  M  A  S  D  *  *  I  V  *  L  A  S  S  G  C  P  D  R  E  K  N  H  L  Y  A  W  W  D  W  K  V  H  *  S  R  *  A  N  R  E  Y  P  A  S  Y  H  Y  G  S  W  L  N  R  S  D  G  F  V  V  :  V  *  P  N  R  K  *  *  C  *  R  T  K  T  K  C  K  R  P  W  L  G  N  F  W   : A  R  S  C  D  G  V  L  Q  Q  Q  *  S  S  T  N  S  P  S  P  R  M  R  D  G  W  L  *  K  I  C  S  G  A  F  D  Y  A  F  F  S  H  Q  L  L  R :   Y  C  *  Q  C  W  C  H  F  S  T  G  *  R  S  C  C  G  S  K  T  Y  P  P  N  S  A  S  F  I  A  *  K  F  T  *  T  A  Y  R  R  H  L  D  A   : G  V  K  C  *  Q  T  P  Y  T  N  Q  R  P  S  P  S  C  E  R  S  R  F  F  C  L  D  L  D  S  F  P  I  L  *  A  S  C  S  *  H  L  G  F  P  V  I  C  T  *  A  *  S  H  L  W  R  Q  I  Y  P  S  L  K  I  Y  K  A  F  *  G  T  Q  Y  N  T  Q  Q  Q  P  F  R  Q  I  A  G  T  E  A  V  K  S  F  P  L  Y  I  D  K  Q  N  H  I  I  M  Y  Y  *  K  W  E  Q  K  K  K  V  N  G  F  T  P  I  K  L  F  F  I  K  N  *  L  I  K  *  L  H  V  S  K  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76957" stop="77069"/>
                    <exon start="78888" stop="78972"/>
                    <exon start="79058" stop="79156"/>
                    <exon start="79233" stop="79432"/>
                    <exon start="79509" stop="79584"/>
                    <exon start="80222" stop="80357"/>
                    <exon start="80447" stop="80583"/>
                    <exon start="80665" stop="80748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLQLRAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPYNIHLIRGNHEASDINALFGFRIECIERLGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHVEQIESIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPVSSPENSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSFAWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71382" e_stop="71808"/>
            <exon e_start="72425" e_stop="72470"/>
            <exon e_start="80282" e_stop="80357"/>
            <exon e_start="80447" e_stop="80583"/>
            <exon e_start="80665" e_stop="80728"/>
            <exon e_start="80800" e_stop="80804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.345" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.904" e_score="0.947"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.985"/>
          <exon-intron don_prob="0.964" acc_prob="0.988" e_score="0.953"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="71382" e_stop="71808" e_length="427"/>
          </exon>
          <intron i_serial="1" don_prob="0.345" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71809" i_stop="72424" i_length="616"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72425" e_stop="72470" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72471" i_stop="80281" i_length="7811"/>
          </intron>
          <exon e_serial="3" e_score="0.947">
            <gDNA_exon_boundary e_start="80282" e_stop="80357" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.844" acc_prob="0.904">
            <gDNA_intron_boundary i_start="80358" i_stop="80446" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="80447" e_stop="80583" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="80584" i_stop="80664" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="80665" e_stop="80728" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.988">
            <gDNA_intron_boundary i_start="80729" i_stop="80799" i_length="71"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80800" e_stop="80804" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71382" stop="71808"/>
              <exon start="72425" stop="72470"/>
              <exon start="80282" stop="80357"/>
              <exon start="80447" stop="80583"/>
              <exon start="80665" stop="80728"/>
              <exon start="80800" stop="80804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71391" stop="71764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATTATTAGAGTATTGATATGGATGTGGATTCAACTATGGTATCGGAGTCCGATCACGATCCGACTGTTCAGAATGATAGTTCGACGTCGGAACAACAGCTTAATGATGAGTCTTCAACTTCGTTGCAGCAGCAAAGTTCACAAACTCAGCAACAGCAGCAGCAAAGTAGTAGTAGTAGTAGTGTTCCTGCTGTTGCGGGACCAAGGTGTGCTCCGACGTATTCGGTGGTGCACGAAGTGATAGAGAAGAAGGAAGATGGTCCAGGGCCAAGGTGTGGGCATACGTTAACGGCTGTACCAGCTGTTGGTGAAGAAGGTTCTCCTAATTATATTGGTCCAAGGCTTATTCTTTTTGGTGGTGCTACTGCTCTTGAGGGAAATTCTGCTGCTTCTGGAACCCCGTCATCTGCTGGAAGTGCTGGAATTC : GCTTAGCAGGGGCTACTGCTGATGTGCACTGTTATGATGTTTTCAC : GAATGCGTGATGGATGGCTTTGAAAGATTTGCTCAGGGGCATTTGATTACGCTTTTTTCAGCCACCAATTACTGCG : GTACTGCTAACAATGCTGGTGCCATTTTAGTACTGGGTAGAGATCTTGTTGTGGTTCCAAAACTTATCCACCCAATTCCGCCAGTTTCATCGCCTGAAAATTCACCTGAACGGCATATAGAAGACACTTGGATGCAG : GAGTTAAATGCTAACAGACCCCCTACACCAACCAGAGGCCGTCCCCAAGTTGCGAACGATCGAG : TGATA</gDNA_template>
            <first_frame> D  Y  *  S  I  D  M  D  V  D  S  T  M  V  S  E  S  D  H  D  P  T  V  Q  N  D  S  S  T  S  E  Q  Q  L  N  D  E  S  S  T  S  L  Q  Q  Q  S  S  Q  T  Q  Q  Q  Q  Q  Q  S  S  S  S  S  S  V  P  A  V  A  G  P  R  C  A  P  T  Y  S  V  V  H  E  V  I  E  K  K  E  D  G  P  G  P  R  C  G  H  T  L  T  A  V  P  A  V  G  E  E  G  S  P  N  Y  I  G  P  R  L  I  L  F  G  G  A  T  A  L  E  G  N  S  A  A  S  G  T  P  S  S  A  G  S  A  G  I   : R  L  A  G  A  T  A  D  V  H  C  Y  D  V  F  T :   N  A  *  W  M  A  L  K  D  L  L  R  G  I  *  L  R  F  F  Q  P  P  I  T  A  :  V  L  L  T  M  L  V  P  F  *  Y  W  V  E  I  L  L  W  F  Q  N  L  S  T  Q  F  R  Q  F  H  R  L  K  I  H  L  N  G  I  *  K  T  L  G  C  R :   S  *  M  L  T  D  P  L  H  Q  P  E  A  V  P  K  L  R  T  I  E  :  *   </first_frame>
            <second_frame>  I  I  R  V  L  I  W  M  W  I  Q  L  W  Y  R  S  P  I  T  I  R  L  F  R  M  I  V  R  R  R  N  N  S  L  M  M  S  L  Q  L  R  C  S  S  K  V  H  K  L  S  N  S  S  S  K  V  V  V  V  V  V  F  L  L  L  R  D  Q  G  V  L  R  R  I  R  W  C  T  K  *  *  R  R  R  K  M  V  Q  G  Q  G  V  G  I  R  *  R  L  Y  Q  L  L  V  K  K  V  L  L  I  I  L  V  Q  G  L  F  F  L  V  V  L  L  L  L  R  E  I  L  L  L  L  E  P  R  H  L  L  E  V  L  E  F  :  A  *  Q  G  L  L  L  M  C  T  V  M  M  F  S   : R  M  R  D  G  W  L  *  K  I  C  S  G  A  F  D  Y  A  F  F  S  H  Q  L  L  R :   Y  C  *  Q  C  W  C  H  F  S  T  G  *  R  S  C  C  G  S  K  T  Y  P  P  N  S  A  S  F  I  A  *  K  F  T  *  T  A  Y  R  R  H  L  D  A   : G  V  K  C  *  Q  T  P  Y  T  N  Q  R  P  S  P  S  C  E  R  S  S :   D  </second_frame>
            <third_frame>   L  L  E  Y  *  Y  G  C  G  F  N  Y  G  I  G  V  R  S  R  S  D  C  S  E  *  *  F  D  V  G  T  T  A  *  *  *  V  F  N  F  V  A  A  A  K  F  T  N  S  A  T  A  A  A  K  *  *  *  *  *  C  S  C  C  C  G  T  K  V  C  S  D  V  F  G  G  A  R  S  D  R  E  E  G  R  W  S  R  A  K  V  W  A  Y  V  N  G  C  T  S  C  W  *  R  R  F  S  *  L  Y  W  S  K  A  Y  S  F  W  W  C  Y  C  S  *  G  K  F  C  C  F  W  N  P  V  I  C  W  K  C  W  N  S :   L  S  R  G  Y  C  *  C  A  L  L  *  C  F  H  :  E  C  V  M  D  G  F  E  R  F  A  Q  G  H  L  I  T  L  F  S  A  T  N  Y  C   : G  T  A  N  N  A  G  A  I  L  V  L  G  R  D  L  V  V  V  P  K  L  I  H  P  I  P  P  V  S  S  P  E  N  S  P  E  R  H  I  E  D  T  W  M  Q  :  E  L  N  A  N  R  P  P  T  P  T  R  G  R  P  Q  V  A  N  D  R   : V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71391" stop="71808"/>
                    <exon start="72425" stop="72470"/>
                    <exon start="80282" stop="80291"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDMDVDSTMVSESDHDPTVQNDSSTSEQQLNDESSTSLQQQSSQTQQQQQQSSSSSSVPAVAGPRCAPTYSVVHEVIEKKEDGPGPRCGHTLTAVPAVGEEGSPNYIGPRLILFGGATALEGNSAASGTPSSAGSAGIRLAGATADVHCYDVFTNA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72462" stop="72470"/>
                    <exon start="80282" stop="80357"/>
                    <exon start="80447" stop="80583"/>
                    <exon start="80665" stop="80728"/>
                    <exon start="80800" stop="80804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPIPPVSSPENSPERHIEDTWMQELNANRPPTPTRGRPQVANDRVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72753" e_stop="72812"/>
            <exon e_start="72911" e_stop="73005"/>
            <exon e_start="73088" e_stop="73187"/>
            <exon e_start="73598" e_stop="73667"/>
            <exon e_start="73816" e_stop="73911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.966" e_score="0.950"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.988" acc_prob="0.851" e_score="0.970"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.971"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="72753" e_stop="72812" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.966">
            <gDNA_intron_boundary i_start="72813" i_stop="72910" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="72911" e_stop="73005" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73006" i_stop="73087" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="73088" e_stop="73187" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.851">
            <gDNA_intron_boundary i_start="73188" i_stop="73597" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="73598" e_stop="73667" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73668" i_stop="73815" i_length="148"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="73816" e_stop="73911" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72753" stop="72812"/>
              <exon start="72911" stop="73005"/>
              <exon start="73088" stop="73187"/>
              <exon start="73598" stop="73667"/>
              <exon start="73816" stop="73911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTCAGCTGAGGATCTTCACGTTCTGGACCTTACTCAACAACGGCCAAGATGGCACAG : GGTTGTGGTGCAAGGACCTGGTCCAGGTCCGCGTTATGGACACGTCATGGCTTTGGTAGGGCAAAGATATCTCATGGCAATTGGCGGAAATGATG : GAAAAAGGCCTCTAGCGGATGTTTGGGCTTTGGACACGGCTGCCAAGCCATATGAATGGCGGAAGTTGGAACCGGAGGGTGAAGGTCCACCTCCTTGCAT : GTATGCAACCGCAAGTGCACGTTCAGATGGTCTTCTTCTGCTCTGTGGAGGGAGGGATGCCAATAGTGTG : CCTCTGGCAAGTGCTTATGGACTTGCCAAACATAGAGATGGACGTTGGGAATGGGCCATTGCCCCTGGTGTGTCACCCTCTCCCAGATATCAACAT</gDNA_template>
            <first_frame> F  V  S  *  G  S  S  R  S  G  P  Y  S  T  T  A  K  M  A  Q  :  G  C  G  A  R  T  W  S  R  S  A  L  W  T  R  H  G  F  G  R  A  K  I  S  H  G  N  W  R  K  *  W :   K  K  A  S  S  G  C  L  G  F  G  H  G  C  Q  A  I  *  M  A  E  V  G  T  G  G  *  R  S  T  S  L  H  :  V  C  N  R  K  C  T  F  R  W  S  S  S  A  L  W  R  E  G  C  Q  *  C   : A  S  G  K  C  L  W  T  C  Q  T  *  R  W  T  L  G  M  G  H  C  P  W  C  V  T  L  S  Q  I  S  T  </first_frame>
            <second_frame>  L  S  A  E  D  L  H  V  L  D  L  T  Q  Q  R  P  R  W  H  R :   V  V  V  Q  G  P  G  P  G  P  R  Y  G  H  V  M  A  L  V  G  Q  R  Y  L  M  A  I  G  G  N  D   : G  K  R  P  L  A  D  V  W  A  L  D  T  A  A  K  P  Y  E  W  R  K  L  E  P  E  G  E  G  P  P  P  C  M :   Y  A  T  A  S  A  R  S  D  G  L  L  L  L  C  G  G  R  D  A  N  S  V  :  P  L  A  S  A  Y  G  L  A  K  H  R  D  G  R  W  E  W  A  I  A  P  G  V  S  P  S  P  R  Y  Q  H </second_frame>
            <third_frame>   C  Q  L  R  I  F  T  F  W  T  L  L  N  N  G  Q  D  G  T   : G  L  W  C  K  D  L  V  Q  V  R  V  M  D  T  S  W  L  W  *  G  K  D  I  S  W  Q  L  A  E  M  M  :  E  K  G  L  *  R  M  F  G  L  W  T  R  L  P  S  H  M  N  G  G  S  W  N  R  R  V  K  V  H  L  L  A   : C  M  Q  P  Q  V  H  V  Q  M  V  F  F  C  S  V  E  G  G  M  P  I  V  C :   L  W  Q  V  L  M  D  L  P  N  I  E  M  D  V  G  N  G  P  L  P  L  V  C  H  P  L  P  D  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72754" stop="72812"/>
                    <exon start="72911" stop="73005"/>
                    <exon start="73088" stop="73187"/>
                    <exon start="73598" stop="73667"/>
                    <exon start="73816" stop="73911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="88336" PGL_stop="81740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88336" e_stop="88207"/>
            <exon e_start="87219" e_stop="87129"/>
            <exon e_start="87039" e_stop="86979"/>
            <exon e_start="85306" e_stop="85229"/>
            <exon e_start="84204" e_stop="84131"/>
            <exon e_start="83711" e_stop="83598"/>
            <exon e_start="83520" e_stop="83413"/>
            <exon e_start="82272" e_stop="82234"/>
            <exon e_start="82111" e_stop="81740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88336" e_stop="88207" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87219" e_stop="87129" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87039" e_stop="86979" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85306" e_stop="85229" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84204" e_stop="84131" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83711" e_stop="83598" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="83520" e_stop="83413" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="82272" e_stop="82234" e_length="39"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="82111" e_stop="81740" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88336" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88336" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88336" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88336" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="87033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88335" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88328" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88326" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88326" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88324" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88313" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87163" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83501" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG : GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG : TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG : CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG : AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG : GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> F  Q  W  E  T  T  A  I  Q  P  P  H  R  R  R  R  K  S  P  P  R  K  M  R  Y  *  S  N  S  S  L  R  S  V  K  L  S  A  I  M  K  L  T   : G  S  F  H  V  S  S  *  I  H  L  I  I  L  T  C  H  S  I  H  P  L  M  K  S  K  D  S  I  V  S :   Y  L  C  L  F  T  L  T  S  A  S  I  H  K  Q  R  R  H  L  A  :  L  *  Q  K  P  S  N  Y  Y  L  T  L  R  R  G  I  I  F  *  T  R  L  M  Q  Q  K  :  K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R :   E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </first_frame>
            <second_frame>  F  N  G  R  Q  Q  R  Y  S  H  R  T  V  A  G  E  N  R  R  P  G  R  C  A  T  E  A  I  L  R  *  G  Q  *  S  *  A  R  *  *  S  *  Q  :  D  P  F  M  F  Q  V  E  S  I  *  L  S  *  L  V  I  R  F  I  H  *  *  S  Q  K  T  V  S  *   : V  I  F  A  C  S  P  *  Q  V  Q  A  S  T  S  K  G  G  I  W  R :   F  S  K  S  P  A  I  I  T  *  P  S  G  E  G  L  Y  S  E  P  G  *  C  S  K  R :   R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *   : G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </second_frame>
            <third_frame>   S  M  G  D  N  S  D  T  A  T  A  P  S  P  A  K  I  A  A  Q  E  D  A  L  L  K  Q  F  F  A  E  V  S  E  V  E  R  D  N  E  V  N  R :   I  L  S  C  F  K  L  N  P  F  D  Y  L  N  L  S  F  D  S  S  I  D  E  V  K  R  Q  Y  R  K  :  L  S  L  L  V  H  P  D  K  C  K  H  P  Q  A  K  E  A  F  G   : A  L  A  K  A  Q  Q  L  L  L  D  P  Q  E  R  D  Y  I  L  N  Q  V  N  A  A  K   : E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  :  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88334" stop="88207"/>
                    <exon start="87219" stop="87129"/>
                    <exon start="87039" stop="86979"/>
                    <exon start="85306" stop="85229"/>
                    <exon start="84204" stop="84131"/>
                    <exon start="83711" stop="83598"/>
                    <exon start="83520" stop="83413"/>
                    <exon start="82272" stop="82234"/>
                    <exon start="82111" stop="82025"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGDNSDTATAPSPAKIAAQEDALLKQFFAEVSEVERDNEVNRILSCFKLNPFDYLNLSFDSSIDEVKRQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLDPQERDYILNQVNAAKEELRAQWKKQLKKDTASKLKSLVTEGKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88336" e_stop="88207"/>
            <exon e_start="87219" e_stop="87129"/>
            <exon e_start="87039" e_stop="86979"/>
            <exon e_start="85306" e_stop="85229"/>
            <exon e_start="84204" e_stop="83598"/>
            <exon e_start="83520" e_stop="83413"/>
            <exon e_start="82272" e_stop="82234"/>
            <exon e_start="82111" e_stop="81740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88336" e_stop="88207" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.867">
            <gDNA_intron_boundary i_start="88206" i_stop="87220" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87219" e_stop="87129" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.817" acc_prob="0.997">
            <gDNA_intron_boundary i_start="87128" i_stop="87040" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87039" e_stop="86979" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.806" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86978" i_stop="85307" i_length="1672"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85306" e_stop="85229" e_length="78"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85228" i_stop="84205" i_length="1024"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="84204" e_stop="83598" e_length="607"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="83520" e_stop="83413" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82272" e_stop="82234" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="0.965">
            <gDNA_exon_boundary e_start="82111" e_stop="81740" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88336" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="87033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88335" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88328" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85229"/>
              <exon start="84204" stop="84163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88326" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88313" stop="88207"/>
              <exon start="87219" stop="87129"/>
              <exon start="87039" stop="86979"/>
              <exon start="85306" stop="85239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84186" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83501" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAATGGGAGACAACAGCGATACAGCCACCGCACCGTCGCCGGCGAAAATCGCCGCCCAGGAAGATGCGCTACTGAAGCAATTCTTCGCTGAGGTCAGTGAAGTTGAGCGCGATAATGAAGTTAACAG : GATCCTTTCATGTTTCAAGTTGAATCCATTTGATTATCTTAACTTGTCATTCGATTCATCCATTGATGAAGTCAAAAGACAGTATCGTAAG : TTATCTTTGCTTGTTCACCCTGACAAGTGCAAGCATCCACAAGCAAAGGAGGCATTTGGCG : CTTTAGCAAAAGCCCAGCAATTATTACTTGACCCTCAGGAGAGGGATTATATTCTGAACCAGGTTAATGCAGCAAAAG : AAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAGGTAATTCTGTTTAGTAGGCTCTTCTGCAATGTCTTCTCATCAGATTATCCAACTCGAATGTCTATGATTAACTGGAATTGTTGTCCCTGGATTTAAAATGGGGAATTTTCTTCCTGATTTTATCTGTGGCTTTGGTTGGCCTCTTTTTTCTTACATTGAGAACCGTGTTAATCATTGCCCAACCACCTTGAACTGTGCTTATATGGCACCTTGATTTTCTCCAAGCAACTAGAGTTGTTTTGGACTGTCTCTCACCTATCTGTTAGAAAACTTTTGTTGAATTCCTCATGTTGTCTACCCCAAAGGTTGAGATAAGGGAATGTTTGATAGTAGTTAATTGAGCATTTATGAAATCCATGTTACCATGAAATTGAAAATTAGTTTTCTTAATTTGAGATGGTTGATTTCTTGACTAATAGGGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> F  Q  W  E  T  T  A  I  Q  P  P  H  R  R  R  R  K  S  P  P  R  K  M  R  Y  *  S  N  S  S  L  R  S  V  K  L  S  A  I  M  K  L  T   : G  S  F  H  V  S  S  *  I  H  L  I  I  L  T  C  H  S  I  H  P  L  M  K  S  K  D  S  I  V  S :   Y  L  C  L  F  T  L  T  S  A  S  I  H  K  Q  R  R  H  L  A  :  L  *  Q  K  P  S  N  Y  Y  L  T  L  R  R  G  I  I  F  *  T  R  L  M  Q  Q  K  :  K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R  *  F  C  L  V  G  S  S  A  M  S  S  H  Q  I  I  Q  L  E  C  L  *  L  T  G  I  V  V  P  G  F  K  M  G  N  F  L  P  D  F  I  C  G  F  G  W  P  L  F  S  Y  I  E  N  R  V  N  H  C  P  T  T  L  N  C  A  Y  M  A  P  *  F  S  P  S  N  *  S  C  F  G  L  S  L  T  Y  L  L  E  N  F  C  *  I  P  H  V  V  Y  P  K  G  *  D  K  G  M  F  D  S  S  *  L  S  I  Y  E  I  H  V  T  M  K  L  K  I  S  F  L  N  L  R  W  L  I  S  *  L  I  G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </first_frame>
            <second_frame>  F  N  G  R  Q  Q  R  Y  S  H  R  T  V  A  G  E  N  R  R  P  G  R  C  A  T  E  A  I  L  R  *  G  Q  *  S  *  A  R  *  *  S  *  Q  :  D  P  F  M  F  Q  V  E  S  I  *  L  S  *  L  V  I  R  F  I  H  *  *  S  Q  K  T  V  S  *   : V  I  F  A  C  S  P  *  Q  V  Q  A  S  T  S  K  G  G  I  W  R :   F  S  K  S  P  A  I  I  T  *  P  S  G  E  G  L  Y  S  E  P  G  *  C  S  K  R :   R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *  G  N  S  V  *  *  A  L  L  Q  C  L  L  I  R  L  S  N  S  N  V  Y  D  *  L  E  L  L  S  L  D  L  K  W  G  I  F  F  L  I  L  S  V  A  L  V  G  L  F  F  L  T  L  R  T  V  L  I  I  A  Q  P  P  *  T  V  L  I  W  H  L  D  F  L  Q  A  T  R  V  V  L  D  C  L  S  P  I  C  *  K  T  F  V  E  F  L  M  L  S  T  P  K  V  E  I  R  E  C  L  I  V  V  N  *  A  F  M  K  S  M  L  P  *  N  *  K  L  V  F  L  I  *  D  G  *  F  L  D  *  *  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </second_frame>
            <third_frame>   S  M  G  D  N  S  D  T  A  T  A  P  S  P  A  K  I  A  A  Q  E  D  A  L  L  K  Q  F  F  A  E  V  S  E  V  E  R  D  N  E  V  N  R :   I  L  S  C  F  K  L  N  P  F  D  Y  L  N  L  S  F  D  S  S  I  D  E  V  K  R  Q  Y  R  K  :  L  S  L  L  V  H  P  D  K  C  K  H  P  Q  A  K  E  A  F  G   : A  L  A  K  A  Q  Q  L  L  L  D  P  Q  E  R  D  Y  I  L  N  Q  V  N  A  A  K   : E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  V  I  L  F  S  R  L  F  C  N  V  F  S  S  D  Y  P  T  R  M  S  M  I  N  W  N  C  C  P  W  I  *  N  G  E  F  S  S  *  F  Y  L  W  L  W  L  A  S  F  F  L  H  *  E  P  C  *  S  L  P  N  H  L  E  L  C  L  Y  G  T  L  I  F  S  K  Q  L  E  L  F  W  T  V  S  H  L  S  V  R  K  L  L  L  N  S  S  C  C  L  P  Q  R  L  R  *  G  N  V  *  *  *  L  I  E  H  L  *  N  P  C  Y  H  E  I  E  N  *  F  S  *  F  E  M  V  D  F  L  T  N  R  E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88334" stop="88207"/>
                    <exon start="87219" stop="87129"/>
                    <exon start="87039" stop="86979"/>
                    <exon start="85306" stop="85229"/>
                    <exon start="84204" stop="84035"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMGDNSDTATAPSPAKIAAQEDALLKQFFAEVSEVERDNEVNRILSCFKLNPFDYLNLSFDSSIDEVKRQYRKLSLLVHPDKCKHPQAKEAFGALAKAQQLLLDPQERDYILNQVNAAKEELRAQWKKQLKKDTASKLKSLVTEVILFSRLFCNVFSSDYPTRMSMINWNCCPWI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83711" stop="83598"/>
                    <exon start="83520" stop="83413"/>
                    <exon start="82272" stop="82234"/>
                    <exon start="82111" stop="82025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="83251" e_stop="82234"/>
            <exon e_start="82111" e_stop="81754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="0.937"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="83251" e_stop="82234" e_length="1018"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="82111" e_stop="81754" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83251" stop="82534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82578" stop="82234"/>
              <exon start="82111" stop="81754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82578" stop="82234"/>
              <exon start="82111" stop="81942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTGAAGTATGTTTTTCTTTCAAATAATTCAGCATGGTCGAAGTTTATACATACTACTTAATAGTCTTGTTTCATGAGTTGTTAGAATTATATGTGCAGTTTTATGTACATTTTCTGCAGAAAATCTAACCTTTCTTATGTCCTCTGCTTGTGTTTGATGTGGTTATAAAATAAAATCCCCTGAAGTAACTTCTACTTGAAAGTTGCATCTCGGTGTATTCTTGTATTTTGTGTAAACGTCTAAGATAAAAAGTATTTTTTTGGTTCACTTTTCTTGTTCTAAAAGGAGCAGAAAAAGAAACTAGGCTATTCCTTCTTGCTTTAAGGGGGGAGGGGGTTCTGGCTCTGTGCTGGGTCATGAGTATCTCATCTCTTAACTAAGAGCCCAAGACATGATGCTACAAGAGCCAATCAAATGACTCTCTTGATTTCAGGATCAAGAAGTTGTTGACGATTGCCTATGAACTTGAGTGGTTTATGCCATCTATTATGTAACTTTACTTTTACTATGAGGACTCTTCTTTGAATCTGCAGCGTCTTTTTTTTTTTTGTAGCAAATGAATGATACAACTAGTAACACGGGTGTTTGGCGTTCTTTGGAACATAATAATCTTTTTTTTTTGTTTCCCACTTGGTGTCCGGTATCCATTTTGGGGCACCAACTGATCCGGATTTGTGCCAACTGCTGCGCAAGATTCATTAAATGGAGATGTGTTCTCTACCAGAACTTTTTCCATTTTCAGGTCTCAATGCTGAGACTTCTGGTTAAAGATGGAGGAATTCTAACCATCCGACCACAATCCCGGGTGACAAACATGATAATATTATTGAACCTAAGGTCTTCAGAACATGATAATTGTTATGAACCTAATCTTCATGATGATATGAAATTGTAAAGTTGAAGACAACCGACATGTTCCAAAATCTAGACTTACTGAATTGAGTTTCTAAAACTTTTCTTCTATTTCTCATCAGGTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCC</gDNA_template>
            <first_frame> F  I  *  S  M  F  F  F  Q  I  I  Q  H  G  R  S  L  Y  I  L  L  N  S  L  V  S  *  V  V  R  I  I  C  A  V  L  C  T  F  S  A  E  N  L  T  F  L  M  S  S  A  C  V  *  C  G  Y  K  I  K  S  P  E  V  T  S  T  *  K  L  H  L  G  V  F  L  Y  F  V  *  T  S  K  I  K  S  I  F  L  V  H  F  S  C  S  K  R  S  R  K  R  N  *  A  I  P  S  C  F  K  G  G  G  G  S  G  S  V  L  G  H  E  Y  L  I  S  *  L  R  A  Q  D  M  M  L  Q  E  P  I  K  *  L  S  *  F  Q  D  Q  E  V  V  D  D  C  L  *  T  *  V  V  Y  A  I  Y  Y  V  T  L  L  L  L  *  G  L  F  F  E  S  A  A  S  F  F  F  L  *  Q  M  N  D  T  T  S  N  T  G  V  W  R  S  L  E  H  N  N  L  F  F  L  F  P  T  W  C  P  V  S  I  L  G  H  Q  L  I  R  I  C  A  N  C  C  A  R  F  I  K  W  R  C  V  L  Y  Q  N  F  F  H  F  Q  V  S  M  L  R  L  L  V  K  D  G  G  I  L  T  I  R  P  Q  S  R  V  T  N  M  I  I  L  L  N  L  R  S  S  E  H  D  N  C  Y  E  P  N  L  H  D  D  M  K  L  *  S  *  R  Q  P  T  C  S  K  I  *  T  Y  *  I  E  F  L  K  L  F  F  Y  F  S  S  G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I   </first_frame>
            <second_frame>  S  F  E  V  C  F  S  F  K  *  F  S  M  V  E  V  Y  T  Y  Y  L  I  V  L  F  H  E  L  L  E  L  Y  V  Q  F  Y  V  H  F  L  Q  K  I  *  P  F  L  C  P  L  L  V  F  D  V  V  I  K  *  N  P  L  K  *  L  L  L  E  S  C  I  S  V  Y  S  C  I  L  C  K  R  L  R  *  K  V  F  F  W  F  T  F  L  V  L  K  G  A  E  K  E  T  R  L  F  L  L  A  L  R  G  E  G  V  L  A  L  C  W  V  M  S  I  S  S  L  N  *  E  P  K  T  *  C  Y  K  S  Q  S  N  D  S  L  D  F  R  I  K  K  L  L  T  I  A  Y  E  L  E  W  F  M  P  S  I  M  *  L  Y  F  Y  Y  E  D  S  S  L  N  L  Q  R  L  F  F  F  C  S  K  *  M  I  Q  L  V  T  R  V  F  G  V  L  W  N  I  I  I  F  F  F  C  F  P  L  G  V  R  Y  P  F  W  G  T  N  *  S  G  F  V  P  T  A  A  Q  D  S  L  N  G  D  V  F  S  T  R  T  F  S  I  F  R  S  Q  C  *  D  F  W  L  K  M  E  E  F  *  P  S  D  H  N  P  G  *  Q  T  *  *  Y  Y  *  T  *  G  L  Q  N  M  I  I  V  M  N  L  I  F  M  M  I  *  N  C  K  V  E  D  N  R  H  V  P  K  S  R  L  T  E  L  S  F  *  N  F  S  S  I  S  H  Q  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  </second_frame>
            <third_frame>   H  L  K  Y  V  F  L  S  N  N  S  A  W  S  K  F  I  H  T  T  *  *  S  C  F  M  S  C  *  N  Y  M  C  S  F  M  Y  I  F  C  R  K  S  N  L  S  Y  V  L  C  L  C  L  M  W  L  *  N  K  I  P  *  S  N  F  Y  L  K  V  A  S  R  C  I  L  V  F  C  V  N  V  *  D  K  K  Y  F  F  G  S  L  F  L  F  *  K  E  Q  K  K  K  L  G  Y  S  F  L  L  *  G  G  R  G  F  W  L  C  A  G  S  *  V  S  H  L  L  T  K  S  P  R  H  D  A  T  R  A  N  Q  M  T  L  L  I  S  G  S  R  S  C  *  R  L  P  M  N  L  S  G  L  C  H  L  L  C  N  F  T  F  T  M  R  T  L  L  *  I  C  S  V  F  F  F  F  V  A  N  E  *  Y  N  *  *  H  G  C  L  A  F  F  G  T  *  *  S  F  F  F  V  S  H  L  V  S  G  I  H  F  G  A  P  T  D  P  D  L  C  Q  L  L  R  K  I  H  *  M  E  M  C  S  L  P  E  L  F  P  F  S  G  L  N  A  E  T  S  G  *  R  W  R  N  S  N  H  P  T  T  I  P  G  D  K  H  D  N  I  I  E  P  K  V  F  R  T  *  *  L  L  *  T  *  S  S  *  *  Y  E  I  V  K  L  K  T  T  D  M  F  Q  N  L  D  L  L  N  *  V  S  K  T  F  L  L  F  L  I  R  C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82693" stop="82352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMNDTTSNTGVWRSLEHNNLFFLFPTWCPVSILGHQLIRICANCCARFIKWRCVLYQNFFHFQVSMLRLLVKDGGILTIRPQSRVTNMIILLNLRSSEHDNCYEPNLHDDMKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="84206" e_stop="84131"/>
            <exon e_start="83711" e_stop="83598"/>
            <exon e_start="83520" e_stop="83413"/>
            <exon e_start="82272" e_stop="82234"/>
            <exon e_start="82111" e_stop="81740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84206" e_stop="84131" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.985">
            <gDNA_intron_boundary i_start="84130" i_stop="83712" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83711" e_stop="83598" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83597" i_stop="83521" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83520" e_stop="83413" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83412" i_stop="82273" i_length="1140"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82272" e_stop="82234" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.907">
            <gDNA_intron_boundary i_start="82233" i_stop="82112" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="82111" e_stop="81740" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84206" stop="84131"/>
              <exon start="83711" stop="83598"/>
              <exon start="83520" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83501" stop="83413"/>
              <exon start="82272" stop="82234"/>
              <exon start="82111" stop="81740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGAGCTGAGAGCACAGTGGAAGAAGCAGCTTAAGAAAGATACTGCTAGTAAATTGAAATCATTAGTTACTGAG : GGAAAGTTCGACCAAGAGCATGAGCAATCAGAAGAATTCCAGCATAAGCTGAAGTTGAAGGTGAAAGAAATTTTAACGGACCAAGAATGGAGGAGGAGAAAAATGGCAATGAGG : ATATCGGAAGAGGAAGGTCGCTTGAAGAAAGATGAGGAAGAAACAAAAGAGTTGTGGAAAAGAAAGCGTGAGCATGAAGAGCAGTGGGAAGGAACTAGAGAAAACAGG : GTGTCCAGTTGGAGAGATTTCATGAAGGGAGGAAAGAAG : GTTAAGAAAGGAGAAATTCGACCTCCAAAGTTGAAAACAGAAGATCCCAATAAATCTTACGTTCAACGACCTGTGAAACGAGGCTAAAACACATGTACGTCAACTAGTTTTGTTTCAGTGATATTTAAAGCTTGTATCAATTTGTATCCGTAGCTAACTTAATTATTCTGCAGCAAAATATATTTAGCGCCCTATTTTAGATGTATATTTAGCTAGACAAGTACATTCATATATTTCATTTGACACAGATTTCTGTTTATGAACTGAATCTTGATAGGATTATTTGTGATATGTTATATGCTAATATGCATATACGACGGGTGACTATTGTGGAGTTTTATATATGAAACTTGATCCCTTTATATACATAAA</gDNA_template>
            <first_frame> R  R  A  E  S  T  V  E  E  A  A  *  E  R  Y  C  *  *  I  E  I  I  S  Y  *   : G  K  V  R  P  R  A  *  A  I  R  R  I  P  A  *  A  E  V  E  G  E  R  N  F  N  G  P  R  M  E  E  E  K  N  G  N  E   : D  I  G  R  G  R  S  L  E  E  R  *  G  R  N  K  R  V  V  E  K  K  A  *  A  *  R  A  V  G  R  N  *  R  K  Q   : G  V  Q  L  E  R  F  H  E  G  R  K  E   : G  *  E  R  R  N  S  T  S  K  V  E  N  R  R  S  Q  *  I  L  R  S  T  T  C  E  T  R  L  K  H  M  Y  V  N  *  F  C  F  S  D  I  *  S  L  Y  Q  F  V  S  V  A  N  L  I  I  L  Q  Q  N  I  F  S  A  L  F  *  M  Y  I  *  L  D  K  Y  I  H  I  F  H  L  T  Q  I  S  V  Y  E  L  N  L  D  R  I  I  C  D  M  L  Y  A  N  M  H  I  R  R  V  T  I  V  E  F  Y  I  *  N  L  I  P  L  Y  T  *  </first_frame>
            <second_frame>  E  E  L  R  A  Q  W  K  K  Q  L  K  K  D  T  A  S  K  L  K  S  L  V  T  E  :  G  K  F  D  Q  E  H  E  Q  S  E  E  F  Q  H  K  L  K  L  K  V  K  E  I  L  T  D  Q  E  W  R  R  R  K  M  A  M  R  :  I  S  E  E  E  G  R  L  K  K  D  E  E  E  T  K  E  L  W  K  R  K  R  E  H  E  E  Q  W  E  G  T  R  E  N  R  :  V  S  S  W  R  D  F  M  K  G  G  K  K  :  V  K  K  G  E  I  R  P  P  K  L  K  T  E  D  P  N  K  S  Y  V  Q  R  P  V  K  R  G  *  N  T  C  T  S  T  S  F  V  S  V  I  F  K  A  C  I  N  L  Y  P  *  L  T  *  L  F  C  S  K  I  Y  L  A  P  Y  F  R  C  I  F  S  *  T  S  T  F  I  Y  F  I  *  H  R  F  L  F  M  N  *  I  L  I  G  L  F  V  I  C  Y  M  L  I  C  I  Y  D  G  *  L  L  W  S  F  I  Y  E  T  *  S  L  Y  I  H  K </second_frame>
            <third_frame>   K  S  *  E  H  S  G  R  S  S  L  R  K  I  L  L  V  N  *  N  H  *  L  L  R :   E  S  S  T  K  S  M  S  N  Q  K  N  S  S  I  S  *  S  *  R  *  K  K  F  *  R  T  K  N  G  G  G  E  K  W  Q  *  G :   Y  R  K  R  K  V  A  *  R  K  M  R  K  K  Q  K  S  C  G  K  E  S  V  S  M  K  S  S  G  K  E  L  E  K  T  G :   C  P  V  G  E  I  S  *  R  E  E  R  R :   L  R  K  E  K  F  D  L  Q  S  *  K  Q  K  I  P  I  N  L  T  F  N  D  L  *  N  E  A  K  T  H  V  R  Q  L  V  L  F  Q  *  Y  L  K  L  V  S  I  C  I  R  S  *  L  N  Y  S  A  A  K  Y  I  *  R  P  I  L  D  V  Y  L  A  R  Q  V  H  S  Y  I  S  F  D  T  D  F  C  L  *  T  E  S  *  *  D  Y  L  *  Y  V  I  C  *  Y  A  Y  T  T  G  D  Y  C  G  V  L  Y  M  K  L  D  P  F  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84205" stop="84131"/>
                    <exon start="83711" stop="83598"/>
                    <exon start="83520" stop="83413"/>
                    <exon start="82272" stop="82234"/>
                    <exon start="82111" stop="82025"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EELRAQWKKQLKKDTASKLKSLVTEGKFDQEHEQSEEFQHKLKLKVKEILTDQEWRRRKMAMRISEEEGRLKKDEEETKELWKRKREHEEQWEGTRENRVSSWRDFMKGGKKVKKGEIRPPKLKTEDPNKSYVQRPVKRG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="97708" PGL_stop="104019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97708" e_stop="97975"/>
            <exon e_start="99904" e_stop="100151"/>
            <exon e_start="103433" e_stop="104019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97708" e_stop="97975" e_length="268"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.951">
            <gDNA_intron_boundary i_start="97976" i_stop="99903" i_length="1928"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99904" e_stop="100151" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="100152" i_stop="103432" i_length="3281"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="103433" e_stop="104019" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97708" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="103529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="103798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="103775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97744" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="103590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97751" stop="97975"/>
              <exon start="99904" stop="100151"/>
              <exon start="103433" stop="103626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103501" stop="104019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103574" stop="103989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAGTGGCACCAGAATTATCGACAAAATTCTGTAAGGAAGAAAAAAATGAGACGTCCCGGCGGCGGACATTCCGGCGGTGGGCATTACGGTGGTGCTGATGCCGGCGCCGATGCTACGTATAACTCCGGCCATCAAACGATGCAACATCAACATCAACAGCAACAACAGCAGCAGATCAAGTCGGAACATCATCAACAATGGAGATGGGAACGAGAGAGCCCGAAATTACCTACAAATTCTATGTCTCCGAACATGTATCCTGAAG : GCCAGGGGAGTGAAGCATCTAGATCCTACTACCAGGGCCAGAGGACTGATCCAAGGTTGGCATTAGAGAATCAAGGTGGCAAGAATCCTAGAGCACTGCCTCGTGAAGAAGGCATGGATATTGGTTATGAAGATAAGCCTGTACAGCAGACTTTGGAAGGTCTTGAAAAAAAATTCCTTGATGATATAATGAAACTGACCAAGGAGCAAAATGATGCAGAGGATGCTGAAAATTCTAGGCATAGGGAG : CGGATAAATGCAATCAACACACAATATCAAGAACAGCTAGTTGCCCTTCGTGCCCGGCAAGCTAATCACAGAGATGAAGTCCTTCGAAGGGAGTGTCATGCCAGAAAACAACAGTATGAGCAAGTTGCTTTGGACAACTATCGACACAGCAACATGAGCACTAGCAATGCTCGTGGATATGTGGGAAACTCTCCAGCAGGAGAACGACAAGTTGCCTACAACTCTCCAGCAGGAGAACGACAAGCAGCCTATAATGCTGATAGTTACGACTCTTACAGGGAGAATGCTCGATATATTGGCAACAGCGGAAGAGATCACGGATATGAACCTAGAGTACAATACCCAGGCGGTCGCGTCTATGAAACTGGTTCACGCTATTATTGAATAACTGCTTAGAATAGTATTGAATCTTTCGTTTAGTTTGCTTTGACTAGGTGGTCGCGTCTATGACACTGGTTCACGCTACTCGTCTTTATAGCTTTTATCAGATTGGATAAAAGAGTCACATATGTACTTTACTTTTTTCTGAATGATTCATGATCTTGGCATGGACTAGTGATGAAGTTTGATCTGTTACTGTTCCTAAA</gDNA_template>
            <first_frame> L  *  W  H  Q  N  Y  R  Q  N  S  V  R  K  K  K  M  R  R  P  G  G  G  H  S  G  G  G  H  Y  G  G  A  D  A  G  A  D  A  T  Y  N  S  G  H  Q  T  M  Q  H  Q  H  Q  Q  Q  Q  Q  Q  Q  I  K  S  E  H  H  Q  Q  W  R  W  E  R  E  S  P  K  L  P  T  N  S  M  S  P  N  M  Y  P  E   : G  Q  G  S  E  A  S  R  S  Y  Y  Q  G  Q  R  T  D  P  R  L  A  L  E  N  Q  G  G  K  N  P  R  A  L  P  R  E  E  G  M  D  I  G  Y  E  D  K  P  V  Q  Q  T  L  E  G  L  E  K  K  F  L  D  D  I  M  K  L  T  K  E  Q  N  D  A  E  D  A  E  N  S  R  H  R  E  :  R  I  N  A  I  N  T  Q  Y  Q  E  Q  L  V  A  L  R  A  R  Q  A  N  H  R  D  E  V  L  R  R  E  C  H  A  R  K  Q  Q  Y  E  Q  V  A  L  D  N  Y  R  H  S  N  M  S  T  S  N  A  R  G  Y  V  G  N  S  P  A  G  E  R  Q  V  A  Y  N  S  P  A  G  E  R  Q  A  A  Y  N  A  D  S  Y  D  S  Y  R  E  N  A  R  Y  I  G  N  S  G  R  D  H  G  Y  E  P  R  V  Q  Y  P  G  G  R  V  Y  E  T  G  S  R  Y  Y  *  I  T  A  *  N  S  I  E  S  F  V  *  F  A  L  T  R  W  S  R  L  *  H  W  F  T  L  L  V  F  I  A  F  I  R  L  D  K  R  V  T  Y  V  L  Y  F  F  L  N  D  S  *  S  W  H  G  L  V  M  K  F  D  L  L  L  F  L   </first_frame>
            <second_frame>  F  S  G  T  R  I  I  D  K  I  L  *  G  R  K  K  *  D  V  P  A  A  D  I  P  A  V  G  I  T  V  V  L  M  P  A  P  M  L  R  I  T  P  A  I  K  R  C  N  I  N  I  N  S  N  N  S  S  R  S  S  R  N  I  I  N  N  G  D  G  N  E  R  A  R  N  Y  L  Q  I  L  C  L  R  T  C  I  L  K  :  A  R  G  V  K  H  L  D  P  T  T  R  A  R  G  L  I  Q  G  W  H  *  R  I  K  V  A  R  I  L  E  H  C  L  V  K  K  A  W  I  L  V  M  K  I  S  L  Y  S  R  L  W  K  V  L  K  K  N  S  L  M  I  *  *  N  *  P  R  S  K  M  M  Q  R  M  L  K  I  L  G  I  G  S :   G  *  M  Q  S  T  H  N  I  K  N  S  *  L  P  F  V  P  G  K  L  I  T  E  M  K  S  F  E  G  S  V  M  P  E  N  N  S  M  S  K  L  L  W  T  T  I  D  T  A  T  *  A  L  A  M  L  V  D  M  W  E  T  L  Q  Q  E  N  D  K  L  P  T  T  L  Q  Q  E  N  D  K  Q  P  I  M  L  I  V  T  T  L  T  G  R  M  L  D  I  L  A  T  A  E  E  I  T  D  M  N  L  E  Y  N  T  Q  A  V  A  S  M  K  L  V  H  A  I  I  E  *  L  L  R  I  V  L  N  L  S  F  S  L  L  *  L  G  G  R  V  Y  D  T  G  S  R  Y  S  S  L  *  L  L  S  D  W  I  K  E  S  H  M  Y  F  T  F  F  *  M  I  H  D  L  G  M  D  *  *  *  S  L  I  C  Y  C  S  *  </second_frame>
            <third_frame>   L  V  A  P  E  L  S  T  K  F  C  K  E  E  K  N  E  T  S  R  R  R  T  F  R  R  W  A  L  R  W  C  *  C  R  R  R  C  Y  V  *  L  R  P  S  N  D  A  T  S  T  S  T  A  T  T  A  A  D  Q  V  G  T  S  S  T  M  E  M  G  T  R  E  P  E  I  T  Y  K  F  Y  V  S  E  H  V  S  *  R :   P  G  E  *  S  I  *  I  L  L  P  G  P  E  D  *  S  K  V  G  I  R  E  S  R  W  Q  E  S  *  S  T  A  S  *  R  R  H  G  Y  W  L  *  R  *  A  C  T  A  D  F  G  R  S  *  K  K  I  P  *  *  Y  N  E  T  D  Q  G  A  K  *  C  R  G  C  *  K  F  *  A  *  G   : A  D  K  C  N  Q  H  T  I  S  R  T  A  S  C  P  S  C  P  A  S  *  S  Q  R  *  S  P  S  K  G  V  S  C  Q  K  T  T  V  *  A  S  C  F  G  Q  L  S  T  Q  Q  H  E  H  *  Q  C  S  W  I  C  G  K  L  S  S  R  R  T  T  S  C  L  Q  L  S  S  R  R  T  T  S  S  L  *  C  *  *  L  R  L  L  Q  G  E  C  S  I  Y  W  Q  Q  R  K  R  S  R  I  *  T  *  S  T  I  P  R  R  S  R  L  *  N  W  F  T  L  L  L  N  N  C  L  E  *  Y  *  I  F  R  L  V  C  F  D  *  V  V  A  S  M  T  L  V  H  A  T  R  L  Y  S  F  Y  Q  I  G  *  K  S  H  I  C  T  L  L  F  S  E  *  F  M  I  L  A  W  T  S  D  E  V  *  S  V  T  V  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0089M02.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97714" stop="97975"/>
                    <exon start="99904" stop="100151"/>
                    <exon start="103433" stop="103816"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WHQNYRQNSVRKKKMRRPGGGHSGGGHYGGADAGADATYNSGHQTMQHQHQQQQQQQIKSEHHQQWRWERESPKLPTNSMSPNMYPEGQGSEASRSYYQGQRTDPRLALENQGGKNPRALPREEGMDIGYEDKPVQQTLEGLEKKFLDDIMKLTKEQNDAEDAENSRHRERINAINTQYQEQLVALRARQANHRDEVLRRECHARKQQYEQVALDNYRHSNMSTSNARGYVGNSPAGERQVAYNSPAGERQAAYNADSYDSYRENARYIGNSGRDHGYEPRVQYPGGRVYETGSRYY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 295 chains have been computed
$ 
$ memory statistics:
$ 394224 bytes spliced alignments in total
$ 144 spliced alignments have been stored
$ 2737 bytes was the average size of a spliced alignment
$ 26944 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1796 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 313 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:07:40
-->
