<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:48:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317000" ref_strand="+" ref_description="SGN-U317000        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G00710.1 | Symbol: None | protein kinase family protein, low similarity to protein kinase (Arabidopsis thaliana) GI:2852449; contains Pfam profile: PF00069 Protein kinase domain | chr4:290048-293453 FORWARD | Aliases: F6N23.9, F6N23_9 (evalue: 9e-128, score=453) genbank/nr: gi|22328189|ref|NP_191980.2| protein kinase family [Arabidopsis thaliana] gi|17064838|gb|AAL32573.1| Unknown protein [Arabidopsis thaliana] gi|20259854|gb|AAM13274.1| unknown protein [Arabidopsis thaliana](evalue: 7e-126, score=453)">
      <seq>tatatatatatgctcttcttcacctgactccattttcacttttcttgatctctctctcaagagatttatctgctgcacttttttgaatcaatcaatcttaaagaaagatcttctaagctgaagaacatgtggtggttgtgatacaaacaaacaagttgcagttatatctctaaagtagggcgggtagtagaatgggctgtgagtcttctaaactcgcctcgtgttgctggagtggacagaatggtcctgttcatgaggctcagaatcctggtgatgaagaaagagctgaagttagtgatttgcctacattccgcgagtttactgttgagcagctgagaatatctacttctggatttgctgtagagaatatagtttcagaacatggtgaaaaagctcctaatgttgtttataaaggaaagttagagaaccagaggagagttgctgtcaaacgctttaatagatctgcatggcctgattcccgacagttcttagaagaagccagatcagttggtcaactccgcaacaataggttagcaaatcttcttggttgttgttgcgaaggtgatgagaggttgcttgtggcagaatttatgcccaatgagacacttgcaaagcatctctttcactgggagacacaacccatgaaatgggcaatgcggttaagggtggctttgtatcttgcacaggctctcgagtattgtacaatcagagggagggcactttatcatgatcttaatgcatatagaatattatttgatgaagaaggcgacccccgtctctcttgctttggtttgatgaaaaatagtcgagatggaaaaagttacagcacaaacttggcatttactcctcctgaatatttgaggacagggagaatcaccccggagagtgtcatgtatagcttcggaacactcttgcttgaccttctcagtggaaaacatattcctccaagtcatgcccttgatctgattaaagacgggaatcttcagatgcttacggattcttgcttggnaagtcaatttttcttctgatgatgggactgaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="25813" stop="35335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26113" g_stop="26219" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26220" i_stop="27000" i_length="781">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27001" g_stop="27163" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="270" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27164" i_stop="27298" i_length="135">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27299" g_stop="27519" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="491" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27520" i_stop="27932" i_length="413">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27933" g_stop="28068" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="627" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28069" i_stop="30045" i_length="1977">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30046" g_stop="30179" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="761" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30180" i_stop="30291" i_length="112">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30292" g_stop="30397" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="867" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30398" i_stop="33705" i_length="3308">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33706" g_stop="33791" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="953" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33792" i_stop="34943" i_length="1152">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34944" g_stop="35035" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1046" r_length="93" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U317000" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1045</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26113" e_stop="26219"/>
          <exon e_start="27001" e_stop="27163"/>
          <exon e_start="27299" e_stop="27519"/>
          <exon e_start="27933" e_stop="28068"/>
          <exon e_start="30046" e_stop="30179"/>
          <exon e_start="30292" e_stop="30397"/>
          <exon e_start="33706" e_stop="33791"/>
          <exon e_start="34944" e_stop="35035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATATATATGCTCTTCTTCACCTGACTCCATTTTCACTTTTCTTGATCTCTCTCTCAAGAGATTTATCTGCTGCACTTTTTTGAATCAATCAATCTTAAAGAAAGGTGCTTTTGGTTTGTTAATGATTGTTTTTTTTTGATATATGTGTGTTTATCTTTGAACCCTTTTGAAGATTGATGTGTTTTTGTATGTGGGGTTTTTGTTCTTGGTGGTTTTTGTGTTTTTTAGACTTGGGTTTTGTGTATTAGCTTGAAAAGATTTGATTTTTGACTTGGGGTTGACTTGTATGATGAATTTTTCAGGGTGGTTTGGAATTGGTGTGTGTTGATTCAGTTGAAAAAGGGGAGCTTTTTGGTTCTTGATTGGATTTGGGGAGGAAGTTTGTGGCTTTGGGGTATTCATTGGTTATGTGAATAGCAAGTGTTTGGATTGACTGAATTTTTTTGAATCTATGCTAAAGGTACCTTTTTTATTTGTTTGGGTTTATACTCTTTTTTTTCATGATTCCAATTTTTTGATTTTTTGCTTTACTTGTGATGTAGCTGAAATGTGATGTGTATGATTCTTGTTGTCTGGGTTTTTTTTAACCTTTTTGATGTCTAGTGAAGTTTCTGTGTGTTTGGAATTTCTGTCCCCCATCTTCGAGTTGTGGATTGCTAATTGAATGGACTGTTGTGTGCTTTGTTGTTTGTTTGAGCTGTGGATAGCAGATTCAATAAACTTTTGTATGATGTTTTGGGGTGTACACCTGAAATTCTGTATGGCTAACAGTTGTATTGCGAGTCTTTAACCTCATCTTTCTGTTTCTAGTTTAATGATATGGATATATTTATAATAATCAGGATGTAATTGTAATGGAAAAAACTTTTTATCACTTAAATGCAGATCTTCTAAGCTGAAGAACATGTGGTGGTTGTGATACAAACAAACAAGTTGCAGTTATATCTCTAAAGTAGGGCGGGTAGTAGAATGGGCTGTGAGTCTTCTAAACTCGCCTCGTGTTGCTGGAGTGGACAGAATGGTCCTGTTCATGAGGCTCAGAATCCTGGTATGTGAAGCTTGTCTTGGTATATTTCAAATCATCCAAGGGCATTTCATTCAGAATCGTAAATTTGTCGGTTTTCAATTCCTTCTTTTTTTGTTATTGTGTAAATGTTTTTGTCCGTTTTCATTCTTCTAATAGGTGATGAAGAAAGAGCTGAAGTTAGTGATTTGCCTACATTCCGCGAGTTTACTGTTGAGCAGCTGAGAATATCTACTTCTGGATTTGCTGTAGAGAATATAGTTTCAGAACATGGTGAAAAAGCTCCTAATGTTGTTTATAAAGGAAAGTTAGAGAACCAGAGGAGAGTTGCTGTCAAACGCTTTAATAGATCTGCATGGCCTGATTCCCGACAGTTCTTAGTAAGTTATTCATAAAGCGCATTTATTTAATTCCATCAGGTGTTTAAATTTCTATATTCATGTTATCTAAAATGATATAATTTTTTTCCTTTCGGCTAACATTTGGTGATAAAATGTTTCATTGCAAAAGGAAAATAACAATGAATAGGAAAGAAAATAGAGAATGTTGGAGATCTTAAGCTGTCCTGTTATTTAAAAGCATCATTCCAGTTGTTTCTTATATGAGACAACTGATCCGTAAATGCAAAAGTGAAGTACGACGCTTTTACATGTCTTATTTTTTGTCGTTAGTGCATGTACTGTTCGATGTTTAAATAGCCTGAAATTGAGTATCTTGTCGTTTTCCTGCTTTACATTGTTTAAGCAATAGACTTTAACTTCCTTTTTGTTATCCTCCAAATCATGAACTTCAGGAAGAAGCCAGATCAGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGTTGTTGTTGCGAAGGTGATGAGAGGTTGCTTGTGGCAGAATTTATGCCCAATGAGACACTTGCAAAGCATCTCTTTCACTGTAAGTTCATTGTACATTTAAATTCTGTTTTCCATCCTAGTTATGACCCTTGTACCATTGCTTTACTCGTTTTAAAAAGTTCATAGTAGGTTGCAGTAATTATTGGAATATACAACATACCCAGTGTAATACAAGTGGGGTCCAGAGAGGGTAGTAGTAGGCAGATTTGACCCCTACTTAGGTAGAATCATGGAAATATATCAGAAAAAAGTAAAAGCAAACAAAATAAATTGTATTCATGAATGAAGATGTACAATTCAAGGGCTTTATTGTTAAGAATTGTACTTGTCCTTTTCTTCGACCACCATACTAGTGCACCTAACAAGGCCTGTGACACCACTATTGCTACCCCTCCTTAGCTGAGCTATAGTGACTGGCTCCCCTATGGTCTGAATATTAGAAATCTTTTTAACTTCTTTTTGACTTGTGCTTTTATACTGTCAATCAATCACTAAAGTAATCTCTATCCCAAAGCGGTTGAGGTCAGCTATATAAATCGTTATGTCGATTCAGCTCTATTTGGGCTCATAATTCCAACAATTAATAATGATTCTAAGATAAACTTAAGAATCTTGGAGGTCTTCTGATTTTTTTTAAAAAAACTGAAAGTTTGATACGTTTCACATTTTTGATTTGTCCCATGGTATACATGTTTCTAACTGGAGTGAAGAGACTATTGTTTAGGAATTATTTGTCCTCTTTGAATAACTTTAATCACGGTAGTGCCACAACTTTGCACCGGTAAGACTACATAAGACATGACTATATTAGGCTTTCTCTCATTCTATCTTCTATATGTTTTTCATTTTGAGAAAATCATTCTATCTTCTATATATGCTACTTCAACTCTGTCTAATGTGATATTTCTATCTTCTCCAACCTGACATTTGTATTAACATTTGCACTTTACAACATTCATGCTATGGGTATATTGAGCTTTAAACGCATAGCATCCATTCCCATACTAAGGTCCCATACTAAAAGCTTAACATTTATAGCCATATGACTCGACCATTCTCTTTCGCATTATGTTTATTTTGTTAGGTATCTTCATATCACATATACTCCTTCCTTTCCATCATCCTATTTTAATTGTGTGTTACGTTTTCACTACTAAGTCTAGATGCCTTAGTTGTCTATTTAAGTTTCACAACTCACCTAATTCACTTCACTCTTTCTGTTTATCGAGGTTCAACATGCAGTGCACATATTCTTTTTACTTATTCGTAAAAAAACCTTTATTTCTAGAGTGACCTTTTTCACAGTTCCAATTTTTGATTGACTCCTTCACTAGCTTCATCAATTAACACAGTATTGTCAGCACATACCACCGTGAAACCTCATCTTGTATACTGCTGGTGAACTTATCCACAAGTGAGGTAAATGAGTAAAAACTCATGCAGATCCATGGTTTAAGTCCCTACTTATTGTTCTCTTTGATCTGTTTCTCAAATATCGTGTACTGCTGTTGCCCTGGTGTTACCTGCAAGCTATACGTAGCCCTAAGAAAATCGTTGTGAGGTTACTCTAAGTTGGATGGCTCAACCATGGTTGATTTTCTATAGTAGTTCTAGTGTGTGATCAAGAGTCGGATCCAAATTTTGAGAAGATAGGATGCAGTAACTTGGTAGAATTCAAGGGAAAAGGGACAAGGATGATTATGGTCAAACTGAACTGATTTGAAATTATAGGCAAAGTTGATTGATTATTATGGTATGTTGATATACAATTTGCCTCTTTTACCCCCATCACTTGTCTAGACAATTTGAGTATTTAAGTAAACCTAATAATGAAATTCGAACTTCACCTAGAAAGTCAATAAATGTAAAATGAGATTGAATGAGATGGGAACACATATCTTCTTACTTCTTTAACGAAAATAAATGAAAATCACAACTTTCTTAAAGATTCTAAGGGAACATATTTTTCTTTGTGATCGGTGAAGTTTCAGTTGACTTATTGTATTTACATATCCAGGGGAGACACAACCCATGAAATGGGCAATGCGGTTAAGGGTGGCTTTGTATCTTGCACAGGCTCTCGAGTATTGTACAATCAGAGGGAGGGCACTTTATCATGATCTTAATGCATATAGAATATTATTTGATGAAGTAAGTACCTAGTGCCCTGGTCATTTATTTTGATGGTCATTGGTAAGTATCAAGTTTTACGGATTTAAGGATTTGAGTGCTTCTAATGATCTACCAATTGTCTATTTCTCAGGAAGGCGACCCCCGTCTCTCTTGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAGGTACCTCTATATACATCATATTTTCAATTTGTAATAGTTAAAGGTAGTGCATTGTTATTGTTCCTATTTTTTGATGCTATGTTATGCTTTCCCTATTTATGCTTTCCCTATTGTCTTCTATGATCTCTTTAATTTTGTATTTTTCTTTTAACTGGTCTGTTGTGCGTTCTCGAGCCGAGGGTCTGTTGGGAAAACCCTCTACCTCCATGCAATAGGGGTAAGGTTTGCGTAGACAGTAAACTCTTATATATATGTGTGTGTATATATATATATATATATATACATACATATATATATATAGATATACATATATGTATATATATATATACATATATATATATATATGTATGTATATATATACATACATATATATATATATATATATACATATATATATAAGAGTTTACTGTCTTCGCAGTAACTTTTCTTCTTATTGCATCTATCTATCAGTAGCAGTTGTGTTACCTGTTACAGCTTTACCAGATATATACGTTATTGAAATTTCTTAAACAGCTAAAAGTGTTCGGAAGCAAAATATTACGTTTTCAAAACTCAATGGAGACAAAAACACTAGGTGATTTTTTTTAAAAAAAAAATCATTTTTTTTAAAAAAAAAACTAGGTGATTCTTCATCTGCCCTAGCCTTGGTGGACATAGTTACCTGTAGTGCGCGAAAGCTGGCCCGGACACCATGGTCATCCAAAAAGCAAAATGTTAAGTAACTAAGCAGGACATTAAATGATGTAGTTGTTTGTCACACAACTACTTCTTTTCAAATAGTATGGTGGTATCCAGGCCAACTTGCGCGTACTGGACCAATTTAAAGATGAGTTTTTAAGCTATAGACATAGTCGGTTTGTTGAGTTCTTTACATTATCAGGAAACCCAAATAAAATCTACTGGTAAGCCTGCCTAATATATGGTATTTGTATTTACCTACTACAATAGGTAAAGGTGATCTGATGGTATAAAAGTTTCTTATACTGCCGGTGTATATATCTTACATTCTTTAAAGATAATGCTACTTTCCACCCACATACGTAGTGATGTAACAGCCCACCAAGACTTGGCTAGAAGAGAACAGTGCACTCGTCTACTCTGCTACAATTTGATCTTTGTTCCAGGGATTAGTTACTTTTGGGGTCTTTGGAAACATCACTTATCTCTTCTGCATGAAGTAGTTTATAAATTTAGCTCCAAAGTACTAAAACTACAAAGGTAAACTTTGACAAATAGCTTCTTTTGGTTGAACTTTTTAAATAGATAAAAGGAGAGTGATGCAAATAATAAGCTAATCTAACAGCCTTCCAACAATATTTTACGGTTATTGGCCAAACTTGGAGCAATTGAAGTGAAGCATGCTAAATTTTTTTGAAAGACATAAAAAGCCGAACATGTAGAAAGGCTATAGTATTAGGTGATTTCTCCAACAGACAGTATTAGGCCAAGCCATGAGGTGAGGTCTCAGGTTCAAATCCCAGTGGTGACAAAAGACATTAGGTGAATTCCTTCCATTTGTCCAAGCCCCTGGACCCCGCGTGAACGCAATGCATCAGGCTGCCCTCTTACCATTTATCGATTAAAAAGTTTATATGGCAATATTTTTTATTAAATCATAATTAAAGAACTTCCCAAAAACTTTATAAATATACCAATATTACCAATCCCCAAGGCTTTGGTTCAAAAGGCAAAGGTAGTATAAAGTCACATATAATGTTAGGTGCATGTCACAAATTCAAATTTGATGTGCAATCTTGATATATTGGTCACAAGGATATAGAGGGTCGATCTGTCATCCCCTGAGTTTCGGAACTGGTCATAAAAAATAAATCGATTCTTGAGGAAGAGGAGAGGATCATGCATAATAATAGGTGCTACATGTTTAGCATTCAGGGGAAGATGTAAATCGACCTGCCGACTCATTTTCAAGTGGTGAGCCAGTTATGGTTGATCTTGTAGAATCTCTTTTAAATCCATCTGAAAGTCTTAAAGTGGCTATAGATCCATTCTTAGATTTACGTGGTTTCTCATTTCAGACTCTTGATGTCTAACAAGCATGGTTATACTTGAACCTACTCCATTTATATTGCACGTATAAAAGGTATCGGTCTTAAACGACAACCTAAAAGTATGATGTGTCAAAGTAATTCTTTCTGAAGAGCGGAGTTCACATGTATATAAGGTTTTACTGTACAACTTATGTACTGCTTTGTGAAATAATACAAAGTTACCAGGTTAAAAAAAATGCTCTGTTTGATGACCTTTTCTTTGAACTTGGTAACTTTGTATTGTATCACAAAACAATACATGGGTTGTATTGAGACCTTATATTCAAGTCTACTCCTCACTTCACTTCTCTATGGTTAAATTGAGTCTAGAACATCAATAATAGAGAAAACTGTCATTTGAGTATAACTGATTACACCAACAAACTAAAAGAAGAATGCAGTTAAGTTTTAACTTTCTGCACATTGTTCACAATGCTCTCAGAGCATCTTGAACTCCTCTCTTTCCAGATAGCCCACCATATAGCACTAAGGATAATTATCCATCTACCTCTGTCCTATGCATGGACCCCTTCTTCCTCCCAACTCATTAAGGCCTCAGTCTTTTTCCTAGGCATGGTCCAGGAAATGCCTTTTAAGGCTGAGAAATAGTCTCCATAGTTGTTGAGTGTACTTGCAATGTAAAAATAGATGGTTGACAGTCTCAGCGGTTTAACCACATAGGAAACACCTGGAACACAAGGTTATCACTCTTTTTTTTGAGAAGGTTTAACTGGTACAAGGTTATCCCTCTTCATGGCATTGTCCTCTGTAAGGACTGTTCCTTAGCCATTAACCATAAAAAGCATGAAACTTTGTTAGGTATCCTGCTCTTCATGACAGTCTTTGCTTGATGACCTTAATTTTTGTTATTTTAACTCCCTTCTTAAGAGGAAGAGGAGGGGGGTTTAGGGAGGAGCCGAGTGATTTTGCTGCCTCTTGCCTATTCCCAGTAGATTGTTTGATTATATTTCTTTGTTGACTTAGAAAGTTGAAGGGGTGCCTTCTTTACAAGTAACTTTTACCTTTGTGGCATTGGTTTGTTCATTTAGCTTGTTTGATTATATTTCTTTGTTGACTTAGAAAAATGAAGGGGTGCCTTCTTTACAAGCAACTTTTACCTTTGTGGCATTGGTTTGTTCATTTAGCTAATTGCTGTAATTTATTAGGAATAATTGCTTCTCTCTATGACATTAATAATATTTCTGGCTATGAGTTGTTGAAATTACTATGGTTCACTCAGTTATTCTGAAATTTTTGCAGGGAGAATCACCCCGGAGAGTGTCATGTATAGCTTCGGAACACTCTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGTCATGTATGCTCTTTTCTGCTAATTGAAGATAATATTGCTTTACTTTTTTTTTTTGGGACAAGAAAACATGACGTTTTGGTGCTTCTTTCGTCCTAGTTTATGTCCAATCCATCTTTTATATGAATGAGAAATCTTTTTGGTCTAAGGCAGTTATGGGTTTGAAGATACTGTTGATTAGGAGAGATAGTAATTTTCAATTTGTTTGAACTCTGGAGATACTGATACACTCTCTTCACCTACCCCAGAAAAAGAAAGGCTTTGATGCTTATTCCTGCTGTGAGCTCCAGTGAACTCTATCTGGCTGCATTTTATCCCATGGAGGGCTGGACTAAGATTACTGGTTTTAATGTTGCCTCATACTGGTTTGCACCTCATTTTTATACGGGCAAAATAGCAGTAGGATGCAAGAACAGATTGTTAACATATGGGCTCTGTGAGTGCCTTGACACACAATATAATATAGTTCCCTAAATAGAGAAATCCTGGCTGTTTTGTTCTCCCTATATGCAGTGGACACACTGGAGCTGTTTGTACAACAAAACTCCGTTCTAATTTCTAGACTCTCGTAATACATGGCTGTCTTCGTCGACTAGGTTCCTAGAAGAAACCATTACCAACACCCCCATGAACATCTGATTCCTTTTCGTGTTTTCCTATTCCCGCCTCTCCTTTTCTTTGGTAAACTATCTTGTTCAATCTCAGTAGTGACGCTTAGACTGCTCGTTGGAAGTATCTGAACAGTCTGAATCATGTTAATTCATTAATTTGTATTATATAATTTTATTGTTCTTACCTGTAAACATGAAAAATGAGAACTAGACTGCTCGTTGGAAGTATCTGAACAGTCTGATTCATGTTGATTCATTAATTTGTATCATATAATTTTATTGTTCTTACCTGTAAACATGAAAAATGAGAACTTCAAGCTTGGCAAAATAGCGTTGATCAGGCATCAAATTTAATTTGGTGGTGTGTGGGGTTTGGGGTTGAGGTGGGGTGGGGGGATTGGTTTCATTGTTTGTTGAAGTCAAGCGGTACTACGGCGACTAAATGGTTGTAAAGTAGGATCAATTATATCAAAACTGTTTATGATAAAGGATATGTGGTTGTTGGCCAGTTACTTTTCCCTTCTAATACTGTATCTGTTTTTGTCAGGCCCTTGATCTGATTAAAGACCGGAATCTTCAGATGCTTACGGATTCTTGCTTGGAAGGTCAA-TTTTCTTCTGATGATGGGACTGAATTGGT</genome_strand>
        <mrna_strand>TATATATATATGCTCTTCTTCACCTGACTCCATTTTCACTTTTCTTGATCTCTCTCTCAAGAGATTTATCTGCTGCACTTTTTTGAATCAATCAATCTTAAAGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTAAGCTGAAGAACATGTGGTGGTTGTGATACAAACAAACAAGTTGCAGTTATATCTCTAAAGTAGGGCGGGTAGTAGAATGGGCTGTGAGTCTTCTAAACTCGCCTCGTGTTGCTGGAGTGGACAGAATGGTCCTGTTCATGAGGCTCAGAATCCTG.......................................................................................................................................GTGATGAAGAAAGAGCTGAAGTTAGTGATTTGCCTACATTCCGCGAGTTTACTGTTGAGCAGCTGAGAATATCTACTTCTGGATTTGCTGTAGAGAATATAGTTTCAGAACATGGTGAAAAAGCTCCTAATGTTGTTTATAAAGGAAAGTTAGAGAACCAGAGGAGAGTTGCTGTCAAACGCTTTAATAGATCTGCATGGCCTGATTCCCGACAGTTCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGCCAGATCAGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGTTGTTGTTGCGAAGGTGATGAGAGGTTGCTTGTGGCAGAATTTATGCCCAATGAGACACTTGCAAAGCATCTCTTTCACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGACACAACCCATGAAATGGGCAATGCGGTTAAGGGTGGCTTTGTATCTTGCACAGGCTCTCGAGTATTGTACAATCAGAGGGAGGGCACTTTATCATGATCTTAATGCATATAGAATATTATTTGATGAA................................................................................................................GAAGGCGACCCCCGTCTCTCTTGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAATCACCCCGGAGAGTGTCATGTATAGCTTCGGAACACTCTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTGATCTGATTAAAGACGGGAATCTTCAGATGCTTACGGATTCTTGCTTGGNAAGTCAATTTTTCTTCTGATGATGGGACTGAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333377" ref_strand="+" ref_description="SGN-U333377        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G63500.1 | Symbol: None | protein kinase-related, low similarity to protein kinase (Arabidopsis thaliana); contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr1:23559963-23562562 FORWARD | Aliases: F2K11.13, F2K11_13 (evalue: 1e-78, score=289) genbank/nr: Protein(evalue: 2e-77, score=292)">
      <seq>cagtgagcgtccaaatccaaagtcactggttgctgctttatttcctcttcagaaagagaccgaggttccttctcatgctttgatgggtatctcacgtgatggtggaactatgcctctgtctccacttggtgaagcctgcttgagaatggatctaacagccatccatgagattttagaacagcttgggtacaaagacgatgaaggagcagctactgagctttcattccagatgtggacaaatcagatgcaggaaacgttgaactccaagaaaaagggtgattctgctttcaggcacaaagatgctaaggccgccatcgaatgctatacactgtttatcgatgttggaactatggtctccccaactgtgtatgcacggcgtagtctgtcttatctcatgaatgatatgccactggaagccctcaatgatgcagtacaggcacaagtaatatctcctgtatggcatgttgcttcgtatttacaagctgcttctctctttgcacttggaagggaaaatgaggcacaaattgcactcaaggaaggttctgttcttgaagaaaagaagaacacaaattcctgaaagtggcaagttaagccactctgatcgttatttaattgctccgttgctaatggtgtttggacatggatcacaaaaagttcaccggtgagaggctattcaatctattgcctcgtgcatgcgatcattaagtaggtttggttttacttcagagcattcttttgctacatataattggatggggttggttttggtcacagcttttgtagacaggttatctaagcgctccggttgaaatggattgacattttccaataaacaaactattctctgtgggaataatcaaatgccgttggttccataaggatccaacacctgtggggggaaaaaggaaagctggagacacttcctgtgctgtaatttatgtacagtgctatttagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="34771" stop="39144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35068" g_stop="35132" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35133" i_stop="36657" i_length="1525">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36658" g_stop="36810" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="217" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36811" i_stop="37786" i_length="976">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37787" g_stop="37900" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="331" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37901" i_stop="38217" i_length="317">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38218" g_stop="38844" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="958" r_length="627" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U333377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>959</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35068" e_stop="35132"/>
          <exon e_start="36658" e_stop="36810"/>
          <exon e_start="37787" e_stop="37900"/>
          <exon e_start="38218" e_stop="38844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGTGAGCGTCCAAATCCAAAGTCACTGGTTGCTGCTTTATTTCCTCTTCAGAAAGAGACCGAGGTTTTGTTTTTTCTTGTTCTGATGTTACTATCTATTACTTATCTTTAGTTTCTGCTGTGTTTGATATTTGTTTCTCTACCTACGTGCTCTTCTTTCTCTCTTTTGATCAAGTGAAACTTTCATTAGTTGGTGTACAAGGATGCAAAATGTACGGAAGGAAAAGATTCTTAATTAAAATTGGATTTGACAATATCCGAATAATGATTTACATCAGCAAGCTTACAGCACCTAAATAGGTTCATAAATAGGCCCCCAAGATTTTTCTCTAGTGGGAAGAGGGAAACATATGATGTGTGGATTCGGTGCACGTCTCAGGTTTGAACACTACCACAGACCAAAGGTGGTGTAAGTGGAGAGGGGTAGAGGCGTCCCCCCATTATTTCCGATGTTTCAAACTTATGGCCTGTAGCCATCGGGGGTTTCTTGGTAGCAAAGGAAGAAGAAAGGTTCATAAGACAGCTTGCTTTGAAAAAAGGTTCATTAGACAACTTGCTTTCCAAATGTGGGACTGAGGTTTATGTCTTCTGTTCCTTCTTCTCCATATTGTCTAAAATATCCCGCTGGGGATGGATTGCATAGCTCTTTTGTCCTCCTTGTGTGCTTTTCTGGTTTTAGCTCTCAGCTTTTGTTTCTGCAGCTATTCTCTTTTTATAAGTTTGCCCTTCAAGCTGCTTTTTTTGTTGAGAGCTCTATAACAGTGAAAGTAGATATGATAAAGCAGTTTGGTAGACATAATATTGTGGATGTTCATTAGTCAGAAGCTGATACGTAGTGGTTGAATTTCTTTAGTGTGTGTAACAACTAATAAGCACACCCTGATTGTGATATGTCCTTTTGTTATTATATAATGGGATCACTCATAAATTTCCCTGACATAAAAATTTGCAGTGATTTTCAGTTTGTTTGAACTGGAAATTTAGTAAAGGTTGACACATGAAGTGCCTTATATTGGGTGTGGAAGTTGTTATTGCCGTCAGTGGCATACTCTGTCCAAGTTTTTGTGAAAAATATGATTAGTAACTATACCATTTTAAAATATTTAGTGCCTAATGCTCCCATGGATTCAGTCTCTTAGTAAGAACACAATGTGAGTTTGAACCTTGCTGTGAACAAGACCTGACATTTAAGTGGAGAAGGGTAGATGGGGTCCAATATCCAGCTAGTTTTGAACCGTATCCCAGCTGGCCGTTGGGGATATCTTGATTATCAAAAATAATATTGAAAGCCTAATTTAATGCTTTTATGTATCTATTTAACTTTTCTTCTGGTATATCGTGTCACTTGAAGCTGTAAAAAGCTATCTGTACGATATATCCGAGGATTGCTTGATGCCCATTATATTGTACACTCGTGATGCAACATTGGTGAATGCATTTAATTCTCTGTTAATTTGGTCCTAGTCTTATTAGTTAAGTTAGTAAAAACCAGGAATTTGGATAAGGTAAAAAGCATTTTAGGTTATATTATTGTTCATATTACTGACTGTAAATTGTCAGAGATCAAAGTAACGATACTTGTTTTGCAGGTTCCTTCTCATGCTTTGATGGGTATCTCACGTGATGGTGGAACTATGCCTCTGTCTCCACTTGGTGAAGCCTGCTTGAGAATGGATCTAACAGCCATCCATGAGATTTTAGAACAGCTTGGGTACAAAGACGATGAAGGAGCAGCTACTGAGGTTTGTCTATCAGTAATTATTTTGAGGAATCAATATCCTCATCTTGTACACACATTCCCTTTCAGTGTTTTATCTTCAACACATTGAGTCACACTTTTAGCCTCAACCATTTGAGGATCTTTTATCCTCTTATCCCTGCTTTTACATGTGTGCATGAGAAGGGGCCTCACATTTTTTTCCACCTGCCTCTTATCCTTTTTCTATGATTTGGTTCGTAGTGATTTCTGTTGTATTAAGGAATCCTAACAACCAGAGAGCTTCTCGATGCTGTTATAAAGGTTCTTCTCAATGTTGTGCCTTCATCTTGAGAGGTTGTCCGGATGAGTGGATTTTTCAACACAAATTGATTTGAATTTGGTCTAAACAAGTGTCCTCTAGGAAAAATAGCCTGTTGCAAAGGAAGTTCTCAGAAATAGGGTTCACAAATGGTGCGGTTGCGGAGCAAACCCGCTAATATTTCAGCCCACCCTGCATAGCACAATTTGTTGTTTCTACCCACCCCAAATAATTTGTTGTTTATATATACCGGTTGTCTTGAAACTTCATTTTTATAAGTAGCTTTTTCTTATTCTGTCCCAATTTCTGAACTCATATTTACTCCACTTTTTTTCTTCTAGAGATAAAAAAAAAAAAAGGAAAATTCAAATGTTAACCTGGGAAAAAAAATGAGACGTGAACCCACTTCGCCCCCCCTGTTGCCTTCCCTACAGTCGGAAACAGTGGAGAAAAATATGATGTACTTATGACTTACTTCTTTTACTTATTACCTTAACCTTCCCAATGCCTATTGAATAATTGTGCCCACTTCTCCAACATGTGAGACACTTAGGAGAGGAATTTACTCAGGTGTTAAAACAATTTTCTTTTGGTAACTTATTATTTGTTCAAATAGATAATCAAATCCAAGTTATTGTGCATTTTTGGAGCCAATTATCAAAGTCTCATGATGACCTCGCTTTTTTAATGTTGCCTGCAGCTTTCATTCCAGATGTGGACAAATCAGATGCAGGAAACGTTGAACTCCAAGAAAAAGGGTGATTCTGCTTTCAGGCACAAAGATGCTAAGGCCGCCATCGAATGCTATACACTGGTAAGAAATTCATGGTCCTCACTCCTCTTTGATAGGTTCAGTTGCCACGGGTTATAATACTTTTAATCATCTCACTTGGGTTTGAATATGAGTAGCAAGACCTTGCAAACTTGAGGTTCTGAGTTGGGTACTTTTCAGATGTGTGTTCTTAGACGAGATAAATGTTTGTAGTCTAAAACTTCGTACATTCAATATAGTAACAAAATGGTCTAAAGAGATGATAACATGTTCTCAAGATTATTAATGAGTGCGTGAAGAGTACATCTAATCTAATTTTAAATGCATCACTCATTTTAATACTTGGGTTGGTTTTGCAGTTTATCGATGTTGGAACTATGGTCTCCCCAACTGTGTATGCACGGCGTAGTCTGTCTTATCTCATGAATGATATGCCACTGGAAGCCCTCAATGATGCAGTACAGGCACAAGTAATATCTCCTGTATGGCATGTTGCTTCGTATTTACAAGCTGCTTCTCTCTTTGCACTTGGAAGGGAAAATGAGGCACAAATTGCACTCAAGGAAGGTTCTGTTCTTGAAGAAAAGAAGAACACAAATTCCTGAAAGTGGCAAGTTAAGCCACTCTGATCGTTATTTAATTGCTCCGTTGCTAATGGTGTTTGGACATGGATCACAAAAAGTTCACCGGTGAGAGGCTATTCAATCTATTGCCTCGTGCATGCGATCATTAAGTAGGTTTGGTTTTACTTCAGAGCATTCTTTTGCTACATATAATTGGATGGGGTTGGTTTTGGTCACAGCTTTTGTGGACAGGTTATCTAAGCGCTCCGGTTGAAATGGATTGACATTTTCCAATAAACAAACTATTCTCTGTGGGAATAATCAAATGCCGTTGGTTCCATAAGGATCCAACATCTGTGGGGGGAAAAAGGAAAGCTGGAGAAACTTCCTGTGCTGTAATTTATGTACAGTGCTATTTAGCTG</genome_strand>
        <mrna_strand>CA-GTGAGCGTCCAAATCCAAAGTCACTGGTTGCTGCTTTATTTCCTCTTCAGAAAGAGACCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTTCTCATGCTTTGATGGGTATCTCACGTGATGGTGGAACTATGCCTCTGTCTCCACTTGGTGAAGCCTGCTTGAGAATGGATCTAACAGCCATCCATGAGATTTTAGAACAGCTTGGGTACAAAGACGATGAAGGAGCAGCTACTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCATTCCAGATGTGGACAAATCAGATGCAGGAAACGTTGAACTCCAAGAAAAAGGGTGATTCTGCTTTCAGGCACAAAGATGCTAAGGCCGCCATCGAATGCTATACACTG.............................................................................................................................................................................................................................................................................................................................TTTATCGATGTTGGAACTATGGTCTCCCCAACTGTGTATGCACGGCGTAGTCTGTCTTATCTCATGAATGATATGCCACTGGAAGCCCTCAATGATGCAGTACAGGCACAAGTAATATCTCCTGTATGGCATGTTGCTTCGTATTTACAAGCTGCTTCTCTCTTTGCACTTGGAAGGGAAAATGAGGCACAAATTGCACTCAAGGAAGGTTCTGTTCTTGAAGAAAAGAAGAACACAAATTCCTGAAAGTGGCAAGTTAAGCCACTCTGATCGTTATTTAATTGCTCCGTTGCTAATGGTGTTTGGACATGGATCACAAAAAGTTCACCGGTGAGAGGCTATTCAATCTATTGCCTCGTGCATGCGATCATTAAGTAGGTTTGGTTTTACTTCAGAGCATTCTTTTGCTACATATAATTGGATGGGGTTGGTTTTGGTCACAGCTTTTGTAGACAGGTTATCTAAGCGCTCCGGTTGAAATGGATTGACATTTTCCAATAAACAAACTATTCTCTGTGGGAATAATCAAATGCCGTTGGTTCCATAAGGATCCAACACCTGTGGGGGGAAAAAGGAAAGCTGGAGACACTTCCTGTGCTGTAATTTATGTACAGTGCTATTTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339913" ref_strand="-" ref_description="SGN-U339913        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G12180.1 | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative | chr5:3937025-3939597 FORWARD | Aliases: MXC9.14, MXC9_14 (evalue: 3e-121, score=431) genbank/nr: gi|73487206|gb|AAZ76712.1| calcium-dependent protein kinase 1 [Petunia integrifolia subsp. inflata] (evalue: 2e-136, score=488)">
      <seq>gacatattgatttttcaagtgatccatggccttcaatttcacatggtgccaaagatattgttaggaagatgttgacttcagatcccaagcagaggttaacagcaattcaagtgttaaatcatccatggatcaaggaggatggagatgcaccagatacaccacttgacaatgctgttttaagtagactcaaacaatttagagccatgaacaatttcaagaaagttgctctccgggttattgcaggatgtttatcagaggaagaaataatgggattaaagcaaatgttcaaaagtatggatgctgataatagtggagcaataacacttgaggagctaaaacaaggacttgccaaacaaggaactaaattatctgattatgaaattcaacaattaatggaagctgctgatgctgatggaaatggaaccatagattatgaagaatttattacagcaacaatgcacatgaacagaatggacaaagaagaacatctttacacagcattccaatattttgacaaggataatagtgggtacatcacaatagaagagttagagcaagctttaagagaatttggtattgatgatggaaaggacatacaagatattgttgctgaagttgactcaaataatgatggtcgaattaattatgatgaatttgcagctatgatgagaaaaggaagtccagaaacaacagcaaatataaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="-" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="44006" stop="39461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43706" g_stop="43590" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43589" i_stop="42750" i_length="840">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42749" g_stop="42634" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="233" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42633" i_stop="41826" i_length="808">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41825" g_stop="41658" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="401" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41657" i_stop="40836" i_length="822">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40835" g_stop="40708" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="529" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40707" i_stop="40084" i_length="624">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40083" g_stop="39984" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="629" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39983" i_stop="39843" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39842" g_stop="39764" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="708" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="719"/>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="-" ref_id="SGN-U339913" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339913" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43706" e_stop="43590"/>
          <exon e_start="42749" e_stop="42634"/>
          <exon e_start="41825" e_stop="41658"/>
          <exon e_start="40835" e_stop="40708"/>
          <exon e_start="40083" e_stop="39984"/>
          <exon e_start="39842" e_stop="39764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATATTGATTTTTCAAGTGATCCATGGCCTTCAATTTCACATGGTGCCAAAGATATTGTTAGGAAAATGTTGACTTCAGATCCCAAACAGAGGTTAACAGCAATCCAAGTGTTAAGTAAGTTAAATATTGTAAATTATATGTTACTTTCTCAGTCTCATTTTACGTGATATTATTTGACTTGTCATGATATTTAAGAAATTCTTTAAAAAAAAATTGTGGTTTAAAACAATGATTAAATATTTGTGTGAATGTAAATTATTTCGTCAAGGATAAAAAAAAATTAAAGTTAAATTATTTTTAATTATAGTAAGATAACACTCTTTTTAAAATGGACTAAAAAGAAATGAGTGTCATGTAAAATGGGATTAAGGAGTATTAGATAAAAACTATTCACCCTTTTGTGTAATATCTTATCTATGTTAAATGAGTTTAACTTGTGTATATAATGGGTTGGGATATTTGTTACTTTTAATTAAAGATTTCGGGAAGAGGTGAAGTCGAATGAGTTCATAATTCTAGTTTTTTAACCTTTTAGGTTCTAAATATCAATAGATTTCTAAAGACAAAGTACAAATTTAAACGAAAGTTATTGAATTTTGCTAAACTTTGAACTTGGTTTTAACTCATAATCTCCTCTAATTTTGAATATGCATAAGTATAAACTTAAACTTGTATAAAATTAAATAAATAAGCACACACGTACTACGTGGCATCCTACATGACAATTTGCATCCTGCACGTATTATGCCACGTAGGATCTAGTATTAACTTGTTCAATTTTATACGAATTTAATTGTTTATTTGTGCATATCCAAAAATGAAATATATAAATATAAAATAAGGTCAAGTTAAAGGGTAAATTTATGTATTATACCAAAAATAAATACATATAGATGAAAAATTCATTGGAGCATATATTACTTGATTTATGAATAAATATGTATATGAATTCAGATCATCCATGGATCAAGGAGGATGGAGATGCACCAGATACACCACTTGACAATGCTGTTTTAAGTAGACTCAAACAATTTAGAGCCATGAACAATTTCAAGAAAGTTGCTCTCCGGGTAATGAAATTGCTTTTTTTTCTCTTTTAAATTGAAGCATGTTCATTTAAAGTTGATCTATACATATTACGTTAAAGTAAAATTTTGAGAAAATCGGCTAATGAAACCCTCCCCCCCCTTTTTTTCCCTTTCAAATAGGAGCATATTTCATTGAAGCTTGTTATATATATATAGATGTTACGTCAATGTAAAATTTCAAAAAGTTATTCTTCCGATAATGAAATCCTTTTTTTCCCTTTCAAATGGAAATCATTAAATAGGTATATATGAAAAGAATTTTAAGATAGTAAAAATTTATCATAAAAGCATTTTGTATTTACAGTTGATGTATAAATGCAACGTCAGAGTAAAATTGTAAGAAAGTTTCCCCCCCCCCCCCCCAAAAATTGAAACATATTTCATTTAAAGTTAATCTATAGATGTTACGTCAAAGTAAAATTTAATTTTGAAGAAAGTTGTTCTCCGGCTAATGAAACCCTCTCGCCTTTTCAAATAGAAGCATATTACATTTAAAGTTGATGTATAAATGTTACGTCAAAGTAAAATTTCAAAAAGTTTCTCTTCGAGTAATGAACCCCCTTTCCTTCTTTCAAGTGAAAGCATATATTTCATTTGAAGTTAATGCACAAATGTTACGTCAAAGTAAAATCTCAAGAAATTTCTCTCCAGATATTTCAAGATCATGAAAAATTACATAAAATCTTGTGAATAAACTCTTCTTTTAAAATATATATATATATAATTTCACCTTTAATTTTTTTTTTAATGTGAAACAAAAGTATTTACTTGGAGAGAAAATATGTTATAGGTTATTGCAGGATGTTTATCAGAGGAAGAAATAATGGGATTAAAGCAAATGTTCAAAAGTATGGATGCTGATAATAGTGGAGCAATAACACTTGAGGAGCTAAAACAAGGACTTGCCAAACAAGGAACTAAATTATCTGATTATGAAATTCAACAATTAATGGAAGCTGTAAGTCCTCTAATTAATTTTTTTTTTATATCAAACACAAAATTATTAATATATTTTAATATTCATAACCTTTTTACCCTCCTAAATTATAAGTGATAGCTAATCATTGCACTTAGCAAATTTACAATTGAATTAGTTTAGAATTTTTAAAAAGACCTAAAATTTGGAATTTATTGATAAGTGATGTTGAATCGATCGATATCTAATTAAAATGGTGATTGTTCTGTTATTACAAAAAGATAATTATTTGTGTTGAAAGACGGAACAAATTTTAAAATTTATCATTTTTTAAAAATTCATCTGAGATCGGCTCAAGTAGTTAAGCTTTATATTGTACAACAGACGACACCCAAGAAAATGATTTGAAATATAAAAATTGTATCAGGACAACTAATTTTACTCGAAATAATATATATATACACACACACACACACTTTCTCTCTTCACTTTTACTTGTCCAATTTAGACTTTGCACCTCTCTTAAGAAATAATGATTAATATGTATATATTTATCATTAAATTTATGTTAATTGATGTATAATCTTATATCATTAGAAATTATTTGAGAAATAAATAATTAATGCCCTCTCGATATATTAAAAGTGACAAATAAATATATATGTATATATTTTTACTATGGACAAATAAAAGTAAATAAAAGTAAAGGAATGAAGCAGTTGATAATTAGAATAAATATTTAATTACCATCTAAAAATCTTTCAAATTAGTATTATGAAAAAAAAGAAGGTGCAAGTTACTTCTTTATTGTAATATATTGATTTTTTTTTTTTTTGTATACATTGAAAAAAATTAATAAATTAGGCTGATGCTGATGGAAATGGAACCATAGATTATGAAGAATTTATTACAGCAACAATGCACATGAACAGAATGGACAAAGAAGAACATCTTTACACAGCATTCCAATATTTTGACAAGGATAATAGTGGGTAAGTTTATCGTATACTTGAATCGAACTACATATATCTGAATAATTAAAATTTATTATAATGTCTTAATATTATTGATGTTTATATAATATTCCTTCATTCACTGCTATTTTCATAATCCGTCATCATTAACTATTGTCGTTGCTGACCATCATATCGGTCATAATCATCACTAGCCACTGTCTACATTCATCATCACCAACCACTATCAGAACAACAACCAATCACGTTCGACAATCATTATTATATCACAAACCATTATCATAATTCATCATCTCTTTTAACTATCACTATAATCCACCACGATAGTTAGCCGCCGTCAACACCAATTATCACCATCAACCACTATTGCTAGACACTATATATCGCCACTAGCTAATGCCCACAACAACATCATTAGCTAAATACATTATTCCTAGTTGATACCCACAACAATACCATATAACTTTTTAAGTGATACAATACTAGATTAATTCAGTATTTTGATACATAAATATTTATTAAATTTTTAAAAAATAGAAAATCTTATATTTTCAAATATGTTCCAAAAACAAAAAGTATTCAAATCTTAAATTATTATTATTTTTACCCTCTTCTAGATTTTAATTTTTTAAATATTTTCAGGTACATCACAATAGAAGAGTTAGAGCAAGCTTTAAGAGAATTTGGTATTGATGATGGAAAGGACATACAAGATATTGTTGCTGAAGTTGACTCAAATAATGTAAAATTTGAAACACTCCCATTTTTTTTAATCATATTATCAATTAATATTTATCATAATTATTATACACATATAATAACCGTATAAATTATTTAATTATGAATTTTTTTATATTCTAATGATTTAATTCTTATTGTGCAGGATGGTCGAATTAATTATGATGAATTTGCAGCTATGATGAGAAAAGGAAGTCCAGAAACAACAGCAAATATAAAAAAAA</genome_strand>
        <mrna_strand>GACATATTGATTTTTCAAGTGATCCATGGCCTTCAATTTCACATGGTGCCAAAGATATTGTTAGGAAGATGTTGACTTCAGATCCCAAGCAGAGGTTAACAGCAATTCAAGTGTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCCATGGATCAAGGAGGATGGAGATGCACCAGATACACCACTTGACAATGCTGTTTTAAGTAGACTCAAACAATTTAGAGCCATGAACAATTTCAAGAAAGTTGCTCTCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGGATGTTTATCAGAGGAAGAAATAATGGGATTAAAGCAAATGTTCAAAAGTATGGATGCTGATAATAGTGGAGCAATAACACTTGAGGAGCTAAAACAAGGACTTGCCAAACAAGGAACTAAATTATCTGATTATGAAATTCAACAATTAATGGAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGCTGATGGAAATGGAACCATAGATTATGAAGAATTTATTACAGCAACAATGCACATGAACAGAATGGACAAAGAAGAACATCTTTACACAGCATTCCAATATTTTGACAAGGATAATAGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCACAATAGAAGAGTTAGAGCAAGCTTTAAGAGAATTTGGTATTGATGATGGAAAGGACATACAAGATATTGTTGCTGAAGTTGACTCAAATAAT.............................................................................................................................................GATGGTCGAATTAATTATGATGAATTTGCAGCTATGATGAGAAAAGGAAGTCCAGAAACAACAGCAAATATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332911" ref_strand="+" ref_description="SGN-U332911        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G12180.1 | Symbol: None | calcium-dependent protein kinase, putative / CDPK, putative | chr5:3937025-3939597 FORWARD | Aliases: MXC9.14, MXC9_14 (evalue: 1e-93, score=326) genbank/nr: gi|47271334|emb|CAG27840.1| calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia] (evalue: 6e-101, score=355)">
      <seq>ctctttctcttttctctctttgtttatttgttcatcatcatcttcataataatttttcttttgcccttttagcttagtccccataatacaatggggaactgttgttcaaggggccaacctaataatgatgatgatgatcatattatgagtaaagaaaaatccaatgataatgatcaatcaaaaagttgtaataataataatactacaccaccaaaatctcctgacccttcttcaaaaccatctaaaaaatcccctataggtccagtattaggaagaccaatggaagatgttaaaaaaacatattctataggtaaagaattaggaaggggtcaatttggtgtaacacatttatgtacacataaacaaaatggtgaacaatttgcatgtaaaacaatagcaaaaaggaagttggttaataaagaagatattgaagatgttaaaagagaagtacaaataatgcatcatttaacaggtcaacaaaatattgttgaacttaaaggtgcttatgaggacaaacattcagtacatttggttatggaattatgtgctggtggtgaactttttgataggattattactaaaggacattatactgaaagggctgctgctactttgcttagaactattgttcaaattgtacatacttgtcattctatgggtgttattcatagagatctcaagcctgagaattttcttcttcttaataaagatgaggattcaccctctcaggctaccgatttcggtctttctgtcttttataaacaggagatgtgtttaaggacatagtgggtagtgcatattacattgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="-" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="46407" stop="43764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46107" g_stop="45339" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45338" i_stop="44111" i_length="1228">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44110" g_stop="44064" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="812" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="-" ref_id="SGN-U332911" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46107" e_stop="45339"/>
          <exon e_start="44110" e_stop="44064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCTTTTCTCTCTTTGTTTATTTGTTCATCATCATCTTCATAATAATTTTTCTTTTGCCCTTTTAGCTTAGTCCCCATAATACAATGGGGAACTGTTGTTCAAGGGGCCAACCTAATAATGATGATGATCATCATATTATGAGTAAAGAAAAATCCAATGATAATGATCAATCAAAAAGTTGTAATAATAATAATAATACTACACCACCAAAATCTCCTGACCCTTCTTCAAAACCATCTAAAAAATCCCCTATAGGTCCAGTATTAGGAAGACCAATGGAAGATGTTAAAAAGACATATTCAATAGGTAAAGAATTAGGAAGGGGTCAATTTGGTGTAACACATTTATGTACACATAAACAAAATGGTGAACAATTTGCATGCAAAACAATAGCAAAAAGGAAATTGGTTAATAAAGAAGATATTGAAGATGTTAAAAGGGAAGTACAAATAATGCATCATTTAACAGGTCAACAAAATATTGTTGAACTTAAAGGTGCTTATGAGGACAAACATTCAGTACATTTGGTTATGGAATTATGTGCTGGTGGTGAACTTTTTGATAGGATTATTACTAAAGGACATTATACTGAAAGGGCTGCTGCTACTTTGCTTAGAACTATTGTTCAAATTGTACATACTTGTCATTCTATGGGTGTTATTCATAGAGATCTCAAGCCTGAGAATTTTCTTCTTCTTAATAAAGATGAGGATTCA-CCTCTCAAGGCTACCGATTTCGGTCTTTCCGTCTTTTATAAACAAGGTACATATGTAAATCAGTTTTAACTTTTATACGCTGACAAATCATATTTAATATGCATGTCTATAGCAATGGTGCCCTAAGGGGATCGTTTTGTATAAATATATTCCAAGATAAGATATAGAAGATTACATTTTATCCTGCATTTGGTTAAGGGTTTCTCTGACTTCTTTAGTCACTTTTGCATCTATTGTATTTAGCAATGCCAGTAGCCTGGTGGGATTTGTGGAACCCGCTCATTGTATTGACTGGCCTAAAATCGTACTTGTCCGTGATGAAAGTCGGGATGAAACCTGTTTTCACTCAAAATCAATCAATTTAACTTATATACACTCATGAATTAATATAACATACATGCATGCATGTTTATATAACACTTAATATACCATACATGCATGCATGTTTACATAGAGAACTAGAGTGACTTAAGGAGTCTTTTGGTGTAAGGGATATATAGTAATCCCAAGATAAATATACATCTTATCCTGCATTTGGTTGGGGGTGTCTCTGACTTCTTTAGTCACTTTTGTATTTGTTGGATATATTTAGCAATGCCAACAACCTGGTGAGAATTTAAGGAACCCACTCATTGTATTGACCCTCCTAAGACCTTACTTGTCCTTGATGAAAGTCGGAATGAAACATGTTTTCATTTAAAATCAACTCACTCTAAGGATTAGTTACTCTATGGAATTAGCTTTTATTCCATTATTTAATGTACTGCAATGATGTGATAAGCTGTTCCATATATATAGTAAAGTAACTGTCTATTTCATCTCTCATACCAAACAAACCTTTAATGATGAAAGAGAATGAAGTAACAGAAGTTTGATAGTTATTCAGGTAGGGCCGATCAAGGGCTAATGTGACCTAGTGATCAATAAGTGAAAACCACGAGAGATGCAAAGGGAAACCTATCATAGACTACACACTAGTCATTTCTTCTCATCTGTCTAAGTTGTGGTGGACAAAAATATCTGATATATTGACCAGTGAGATGGTAATAGGTGTGCACACAAACTAGCTTGGACACAAATTTTTATCTGGTGAATAAAATTATCTGATACATGTGTTAGTGAGATGTAACATGTGTGCACACGAACTAGCTCACACACTAATATTATATAGTAAAATTCCAAAAAGAAAAAAGTAGTTAGTGCTCTTTAATCTCATTTTTGTAAATGCATAAAACTATACTCCCTCTATTAATATTCAATTTTGTGTTGTACAGGAGATGTGTTTAAGGACATAGTGGGTAGTGCATATTACATTGCACCT</genome_strand>
        <mrna_strand>CTCTTTCTCTTTTCTCTCTTTGTTTATTTGTTCATCATCATCTTCATAATAATTTTTCTTTTGCCCTTTTAGCTTAGTCCCCATAATACAATGGGGAACTGTTGTTCAAGGGGCCAACCTAATAATGATGATGATGATCATATTATGAGTAAAGAAAAATCCAATGATAATGATCAATCAAAAAGTTG---TAATAATAATAATACTACACCACCAAAATCTCCTGACCCTTCTTCAAAACCATCTAAAAAATCCCCTATAGGTCCAGTATTAGGAAGACCAATGGAAGATGTTAAAAAAACATATTCTATAGGTAAAGAATTAGGAAGGGGTCAATTTGGTGTAACACATTTATGTACACATAAACAAAATGGTGAACAATTTGCATGTAAAACAATAGCAAAAAGGAAGTTGGTTAATAAAGAAGATATTGAAGATGTTAAAAGAGAAGTACAAATAATGCATCATTTAACAGGTCAACAAAATATTGTTGAACTTAAAGGTGCTTATGAGGACAAACATTCAGTACATTTGGTTATGGAATTATGTGCTGGTGGTGAACTTTTTGATAGGATTATTACTAAAGGACATTATACTGAAAGGGCTGCTGCTACTTTGCTTAGAACTATTGTTCAAATTGTACATACTTGTCATTCTATGGGTGTTATTCATAGAGATCTCAAGCCTGAGAATTTTCTTCTTCTTAATAAAGATGAGGATTCACCCTCTC-AGGCTACCGATTTCGGTCTTTCTGTCTTTTATAAAC-AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGTGTTTAAGGACATAGTGGGTAGTGCATATTACATTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324842" ref_strand="+" ref_description="SGN-U324842        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr2:3820372-3820734 REVERSE | Aliases: F7B19.19, F7B19_19(evalue: 4e-09, score=58.5) genbank/nr: gi|53689765|gb|AAU89775.1| pol polyprotein-like [Solanum tuberosum] (evalue: 2e-102, score=374)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="57973" stop="59281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58273" g_stop="58979" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="744"/>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U324842" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58273" e_stop="58979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACTTGGTAATTCAGTAATATCTGGAGTAAATTTTGTTGAAGAAAATCCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCTTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTTTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATAAAAAATTATTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGAAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAATGAATTTAGTTTCAATTCTAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCT</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341081" ref_strand="+" ref_description="SGN-U341081        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 5e-24, score=114)">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="-" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="70700" stop="69601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70400" g_stop="69899" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="-" ref_id="SGN-U341081" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70400" e_stop="69899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCAAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325856" ref_strand="+" ref_description="SGN-U325856        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tattaatatttcggcaaatattcaagtgcttttctccgctattttcctgctttgttcgagtacaaggtgaatcattttgttttgtttaacaggtttcatatttgaagttccagttgaagattaactgaaaaaggatttgtttatttgtttgaatgtatatatgtctatatattttattttttccgctattttatttattcgaatgttgtaacaattgtaaccctaagatcatataataaagttatttgggggtcgtctaggggagggggatttatatgcttacttgctcattatttttttttttagaaatcatgcctataggtttgtctttaaccacctagatttgatatttgtaggtgttataatctaatcaattttcaatttgcttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="62405" stop="79817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78972" g_stop="79063" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79064" i_stop="79218" i_length="155">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.956" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79219" g_stop="79518" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="391" r_length="299" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="407"/>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U325856" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78972" e_stop="79063"/>
          <exon e_start="79219" e_stop="79518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAATATTTCGGTGAATATTCAAGTGTTTTTCTTCGCTATTTTCCTACTTTGTTCGAGTAAAAGGTGAATCATCTTGTTTTGTTTAACAGGTTAGTATTCTTAACATTCATACTATTTTCATATTCACATATTTGTGTAAACCATTGTCTGTTTTTATATAGAATCCGTCATTAAACGATTGCATATTGTCTCACCTTAACTAACAAGTGTGATTACTTGTGTAGTTATTTAATTACTTTGACAGGTTTCATATTTGAGGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTG-TTGAATGTACATATATATATATATTTTTATTTTTTCCGCTATTTTATTTATTTGAATGATGTAACAATTGTAACCCTAAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</genome_strand>
        <mrna_strand>TATTAATATTTCGGCAAATATTCAAGTGCTTTTCTCCGCTATTTTCCTGCTTTGTTCGAGTACAAGGTGAATCATTTTGTTTTGTTTAACAG...........................................................................................................................................................GTTTCATATTTGAAGTTCCAGTTGAAGATTAACTGAAAAAGGATTTGTTTATTTGTTTGAATGTATATATGTCTATATA-TTTTATTTTTTCCGCTATTTTATTTATTCGAATGTTGTAACAATTGTAACCCT-AAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340210" ref_strand="+" ref_description="SGN-U340210        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2), identical to dihydropyrimidine amidohydrolase (PYD2) (Arabidopsis thaliana) GI:28194047; similar to SP:Q9EQF5 Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase) (DHP) {Mus musculus}; contains Pfam profile PF01979: Amidohydrolase family | chr5:3941556-3944728 REVERSE | Aliases: MXC9.16, MXC9_16(evalue: 6e-66, score=247) genbank/nr: gi|42567801|ref|NP_568258.2| dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) [Arabidopsis thaliana] >gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] >gi|28194047|gb|AAO33381.1| dihydropyrimidine amidohydrolase [Arabidopsis thaliana] (evalue: 4e-64, score=247)">
      <seq>actaatagagatttactcaacaatttgattcaatggagttgttcttcagagttcaacttttgattcctttgatttcagtgcttcttgcccttttccctctttctgaatccaataatatccagttttgtgatgccacaaatatttatggagattctgggtgcgattttatgtcgtcagtttcatcaaagatacttataaaaggaggaactgtagtgaatgctcatcataaggaggtcgctgatgtgtatatagaggatggaacaattgttgcagtgcagcctaacatcaaggttagtgacgatatcaaagtcattgatgcaactggaaagtttgtcatgccaggaggaattgatcctcatacacaccttgctatcgaatttatgggatcggagacaattgatgacttcttcagtggacaggcagccgcattagctggtggaacaacaatgcatattgactttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="85668" stop="88800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85968" g_stop="86089" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86090" i_stop="86897" i_length="808">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86898" g_stop="87065" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="290" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87066" i_stop="87980" i_length="915">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87981" g_stop="88032" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="342" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88033" i_stop="88376" i_length="344">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.228" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88377" g_stop="88500" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="466" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U340210" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85968" e_stop="86089"/>
          <exon e_start="86898" e_stop="87065"/>
          <exon e_start="87981" e_stop="88032"/>
          <exon e_start="88377" e_stop="88500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATAGAGATTTACTCAACAATTTGATTCAATGGAGTTTTTCTTCAGAGTTCAACTTTTGATTCCTTTGATTTCAGTGCTTCTTGCCCTTTTCCCTCTTTCTGAATCCAATAATATCCAGGTATGTTTTCTCTATTTAATTTGAATTTTCAAGCGATATTGTATTTATTGATTTCTTAATCGATGTGATTTTTCGATACTTATTTTGAGACGAATGGAGTAATAATTTGAACTTGTGTATGAGAATGAATAGAAGTTCAATTTTTGTTAGGGAACCATTAGTAGCAAAAAAATTTAAATTATGACTTTTTGACCACTATACTAGAATGTGCAAGTAGTGTATCTTTGATAGATTAATGAAAGTGAAATCTGGTTGAATCTTTTTTATTTTTAATAACTGTGGTGTTTGAGCCCGTTTTCACGCACATCCACACCAGCAACACGTACCAGGTATCTCTGTCCACTAAGGCTAGGACAATCTATGTTGCTCGGACTCTTCAAATATGTCGGATTTGCCGAAAGTAGTGTATTTTTGGAGAATTTGACATAGATATGGCATCAAGAGTGAAGAGTCTGTGTAACTTAGAGGATAAATGGGAATGATCACCTAAGGTTTTTTTGTCTCTGCTGGGATTTGAACCTAAGACCTCGAGACTTCCAAACTACTATTGGATCAATCTTCTGGTGGTTTTCTAATAAGTTGATTTATTTCATTGTTTTATTTCTGTTTTGTACTGATTTTGTGGATGAAGTCTCATTTGAATCGTGTTAGATGATTAAGTTTTAGGAATATGACGTTATGAACTGTAGTATGGAAAGTTTGAGAAGTAAAGAACATAAATAAAATTTTCTGCCTTTAATGTCGATGTCAAGCAGTTTCTTTTTTTTGAAGTATGGTTTAAAATCTAAATCAGTTATATCTGTCTCAGTTTTGTGATGCCACAAATATTTATGGAGATTCTGGGTGCGATTTTATGTCGTCAGTTTCATCAAAGATACTTATAAAAGGAGGAACTGTAGTGAATGCTCATCATAAGGAGGTCGCTGATGTGTATATAGAGGATGGAACAATTGTGGCAGTGCAGCCTAACATCAAGGTAATTGTTGAAGTTTCTCTATTTGGTTTGAGTTTTCTTGATTGAATGGGATGTGAATAGTAGTTGGGCCTATTGTCTATTGTGATTGATCTCTCTGAGCTGATAGCTGAATTTGATGCTAGTTATTGTTCTTAATTCATTTGTATCTACCCATATTTTGTTCTTACTAGATGGAACAACGAAAGGGTTTAGCAAATATTCTGTTAACTATCTGAACAAACAGAAAACATTTCTCGTATGTGAAAGTTTGACTAGTTGGTCCCTGGTACACCAAGACTGAAAGACTAGATGAACTGTGAGCTAGAATGTTCAGGTTTGGAAAAATATTTGGAAATCCTGGGTTTGTGTCTAGAAAATGGCAGTTTTGCTTAATTTTGCAAGGAAAATATGTTTTTAATTAGTCTAGAGACGGTAAGAGTCATAAGACGCGATTCTAGAGGATAGCTTAAAAAATCTGGACGTACTTTGGTGGATATATGGATGTAGGATCATATGGAAGTTTTACTGAAGAAGGAATAGCTTTTTTGACTTCATACCATTTTTCTAAATGTCACAACATTATCACTGGATATAAATTGCCCCGATTACTTTAGCACGATAGAAAGAACTTCTTGCTTTCTCATTTTATGATGCTGAAGTTTGCTGAGCCGGGAGAATTGTCTTAGTACACTAGTTAGTCCTTCCACTTTGTGTTTAAGGTTCTTTTGTGTCTTCACTTGTTGGTCAGTACGATTGTCACCATTTATTCCATTACATTCTTAAGTTGACCTGCTAATATGCGACAGCTGTGCCTTCAAGCTGGCTTTATTTATTCATGAAACTCTTATGTTTTCACTGGTTGATTATTTTTATCCTTAACGGGTAACTTCATTACTTTTCATCTGAATATGATGCACAACTCAAGACCATCTGCAGGTTAGTGACGATATCAAAGTCATTGATGCAACTGGAAAGTTTGTCATGCCAGGTAGAGTTTCTTTCTTCAGGGCTAAGTGGCTCAGTTGATTGCATTTCTAGTCTCAGAATTGTAGTTTTGCTTTTTTAATCCTGCCAGAGAAAAGACCCGTAAGGCATGACTACTGTAGACAAATATTTTTTAGTGTCATATGTGCAGCTCTTACATTATTTCCATTTACGTAAGTTTAATGTGAATAAGCAGAGTTTTTGTTTAATACAAAATATTCCAGTCTTAGTGGTAAAATATACATGAGAGCATTTTCTCGAAATTATAGTTCCTAATAAACAGTCTCACTAGTAAACCTTAGCTAACAGACAGTTTACCTTCGCTTCTGATTCTTATGATGATGACAGGAGGAATTGATCCTCATACACACCTTGCTATGGAATTTATGGGATCGGAGACAATTGATGACTTCTTCAGTGGACAGGCAGCCGCATTAGCTGGTGGAACAACAATGCATATTGACTTTGTTAT</genome_strand>
        <mrna_strand>ACTAATAGAGATTTACTCAACAATTTGATTCAATGGAGTTGTTCTTCAGAGTTCAACTTTTGATTCCTTTGATTTCAGTGCTTCTTGCCCTTTTCCCTCTTTCTGAATCCAATAATATCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTGATGCCACAAATATTTATGGAGATTCTGGGTGCGATTTTATGTCGTCAGTTTCATCAAAGATACTTATAAAAGGAGGAACTGTAGTGAATGCTCATCATAAGGAGGTCGCTGATGTGTATATAGAGGATGGAACAATTGTTGCAGTGCAGCCTAACATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGACGATATCAAAGTCATTGATGCAACTGGAAAGTTTGTCATGCCAG........................................................................................................................................................................................................................................................................................................................................................GAGGAATTGATCCTCATACACACCTTGCTATCGAATTTATGGGATCGGAGACAATTGATGACTTCTTCAGTGGACAGGCAGCCGCATTAGCTGGTGGAACAACAATGCATATTGACTTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329766" ref_strand="+" ref_description="SGN-U329766        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2), identical to dihydropyrimidine amidohydrolase (PYD2) (Arabidopsis thaliana) GI:28194047; similar to SP:Q9EQF5 Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase) (DHP) {Mus musculus}; contains Pfam profile PF01979: Amidohydrolase family | chr5:3941556-3944728 REVERSE | Aliases: MXC9.16, MXC9_16(evalue: 3e-114, score=408) genbank/nr: gi|42567801|ref|NP_568258.2| dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) [Arabidopsis thaliana] >gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] >gi|28194047|gb|AAO33381.1| dihydropyrimidine amidohydrolase [Arabidopsis thaliana] (evalue: 3e-112, score=408)">
      <seq>cgagctattcgtttggccagctttgtgaacactccattgtatgttgttcatgtcatgagtattgacgcgatggaagaaattgccagagctcggaagtcaggtcaaagaattgttggggagccagtcgtttcaggtttacttcttaatgattcagtactttgggatcctgacttccattttgcagcaaggtacgtcatgagcccaccaatcagagcagcaggtcatggaacagctcttcaagcagctcttgctgcaggggttctgcagctggtaggaactgatcactgcaccttcaactcaactcagaaagcgctaggaattggtgatttccggaaaataccaaatggtgttaatggtatggaggagagaatgcatttggtttggaatacaatggtggcttctggtcagatatctgtcactgattatgttcgcataacaagcacagaatgtgctcggattttcaatatctatccaaggaagggagcaatacttgttgggtctgatgcagatataatcattttaaatcccaattcaagcttcaagattagttcaaagtcacaccattataggacagataccaatgtctatgagggttggacaggcatgggaaaggttgaaactacaattgcaggaggaagggttgtttgggaaaatgatgagctgaaagtcatccctggtgctggcaagtacattgaaatgccacctttcagttatctttttgacgggatagacaaggcagatgcaaagtacctctcttccttaagagcacccgtagaacgatcaacgacttgatttggcaaattcactttttcattatgaggaacagaaagtctctctctatttacttgtaaatacagaatatccttaaggacattcaaactcttgcagttgctgaaaaacccttgggcacataatgctatttataaaacttatgtttattccgtaaaggatgttatacattggtgtatagctggattactgaatggagtttgagcatttaccttgtagcatttacctcatagtgcagaataaaagtagattccaggaaacacacagctttgattaaaaaaaaaaaaaataaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="90994" stop="97558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91294" g_stop="91393" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91394" i_stop="91897" i_length="504">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91898" g_stop="91985" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="188" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91986" i_stop="92075" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92076" g_stop="92154" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="267" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92155" i_stop="92679" i_length="525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92680" g_stop="92767" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="355" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92768" i_stop="92855" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92856" g_stop="92896" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="396" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92897" i_stop="92980" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92981" g_stop="93033" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="449" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93034" i_stop="93390" i_length="357">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93391" g_stop="93547" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="606" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93548" i_stop="94752" i_length="1205">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94753" g_stop="95159" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="1007" r_length="401" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1065" polyA_stop="1089"/>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U329766" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1013</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91294" e_stop="91393"/>
          <exon e_start="91898" e_stop="91985"/>
          <exon e_start="92076" e_stop="92154"/>
          <exon e_start="92680" e_stop="92767"/>
          <exon e_start="92856" e_stop="92896"/>
          <exon e_start="92981" e_stop="93033"/>
          <exon e_start="93391" e_stop="93547"/>
          <exon e_start="94753" e_stop="95159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTATTCGTTTGGCCAGCTTTGTGAACACTCCATTGTATGTTGTTCATGTCATGAGTATTGACGCGATGGAAGAAATTGCCAGAGCTCGGAAGTCAGGTTTGGCATAAAGTGTTTGAATAGTATATTTGATGGAAATTTGGATTAGTGGCTTTGTAATGCTTACCTTATGGTGAATTTGCAATGATTTATTGTCCCCTCTAAGGAATATTAGTAAGTATTCCCATCATATCATCCATGCAAACCTGTTCTGGGGCTAAACTTTTGTTAATTTTTTTTATATTGACCATGGAGCTCCTTTGATATGAAGGTCCTCTTTTCTGCTTCATGCTGTAACCAAATTGTTTACTCTGCTTAGAATATACCAACCTTAACTGCGAACTTGTAAACAAAACTTAACTTGGTACTGGCAATGTTTCTATCTCTAACTTGCACCATGCACATTTTTGTCTCCTCTCTGAAAGACACGTTTATTTGGGTACCCTTTGATTTGGAACTATTTCTCCTCTACGTTAATATTATTTATCAAAAAACTCTGCTTCAGATACCAGTTTCATGGGACTTCACTTATGCCTCTATACTAAATTTACGATCTCATTTCAGGTCAAAGAATTGTTGGGGAGCCAGTCGTTTCAGGTTTACTTCTTAATGATTCAGTACTTTGGGATCCTGACTTCCATTTTGCAGCAAGGTAAAGATCATTTTTCTCCTCTGTGGTTTAACTTTTCTTTTCTCCCTTTATAGATGGCATAAGATGCCCGTAAACGTTTTAATATTTCAGGTACGTCATGAGCCCACCAATCAGAGCAGCAGGTCATGGAACAGCTCTTCAAGCAGCTCTTGCTGCAGGGGTTCTGCAGGTTTCAGTCTGATTTATGTATAGATATCAATATATGCTTTTTGTGCTGTCACAAAATTTAAAGATACTTGGGCGACTCCGTTGGCCATAGGTAATATCCAAGATGGCGTTTGGCCATGTTTCGTTGTAAAAATTGAAAAAAAGAAGTTTTTGGTTTCCAAGTGAAAAATTATATTTGAAATTTGGAGTTTTATGTGACTATGACACAAATTAGAGTTCTTTTTTGTAAAAAAAAAATTGTGAGTAATTTGGAGTTAAAAAAGCGAAAACAACTTTTTGTTGTTTTGGAATTTCTGAAAATTCCGAAATTCAAAGTTGAATTCGGGAATTTTCTGAATTTTTATGGCCAAACGTGGTTTCCGGAGTTCAACTCCAAAGAAGTACAAAAATATCATGGTCAAACACTACTCAAATATTTCACTTTCCCATCTTATGATCTATCCATCAACTCATATGAGCAAGATAGAAGTCATTAGCGTTCCTTTTCTTGTCTATACAACTAATCAGCATGGTTTTATATATGCAGCTGGTAGGAACTGATCACTGCACCTTCAACTCAACTCAGAAAGCGCTAGGAATTGGTGATTTCCGGAAAATACCAAATGGTGTTAATGGTATGCAAAAGTTTCTTTTTCCTTACATATATCTATCGATGTGTCTTTATCTTCCTTCTAATGTATCAGTGTAATCATTTATTTATAGGTATGGAGGAGAGAATGCATTTGGTTTGGAATACAATGGTGGTAAGCTGTGACATTTTCTATTGTTGCTCAAATAAATTGTCCTATGCGAGTATATTGTTTATTTTCTTCCGATGGTTTTGTCAGGCTTCTGGTCAGATATCTGTCACTGATTATGTTCGCATAACAAGCACAGAATGGTAAACTACTTAACTTTTTCTGAATAACTTCTCAAAATTTGATAATGGACCCTTCCCTCTACCCTTCTCCACTTAAGTACCAGACTTTTATCTACAACAGTGGTAAACTCCTAAACTTTGGCAAAAAGTCTTGTAGATGTTCTGATATATATATTTTCTTTATAACCATGGTGTTCGGTCTAGCTTGCGTGCACCTCGACGAGCAGATGTTCTGATATTTATTTCAATGTGAATCTAATTCAACCAGCTTGATGCTTATGATATCTTCTTTGGTTTAAATCGCTATATTTCAATTTCTAACAATGCAACTGTCTTATTATGGAAGCTTAACTGGAAATATCTGATCTTGTGATTTAGTGCTCGGATTTTCAATATCTATCCAAGGAAGGGAGCAATACTTGTTGGGTCTGATGCAGATATAATCATTTTAAATCCCAATTCAAGCTTCAAGATTAGTTCAAAGTCACACCATTATAGGACAGATACCAATGTCTATGAGGGTTGGACAGGCATGGTAAGCATTCACAAATTATCGAGGCTTATGTATTACTCATAATATTATGTTGTAGCTTTGCCAAATACAGTGATTTTGTTGTTTAGATTTTCTTATGAATTTACTTAATAAGTGCTACAGAATATGATTAGCCAAATCAAATGAGCGACTCTAGGATATTTTACTTTAACCTCTCTCTTCAGTAGCACTCTTTTCCAATGCCATTTTCCAGCAACCCTGACTGGAAATACATCAGTTTCATCACCATAAACAATTTCCCAGCATATTTCGATGGAAGACAGCACAATCTATTTTGATGTAGGATTTAAATCATATAATGTAACCTGAAGTGAATTGACAATAGAGGTATGGTATGATTGGACAGAACGTGATCGGAACCGTTAGAAAGGAATACAAACAAGAATAGTATATACAATCCTACTTAAAATCCGAATAGTAGTATTATATAGAATCCTACTTGGTAAATGATTGTATTATAGTGTCTATAAATAGGGTCTCTGTGAAAAAATGTACATACACAATTCAATAATATTTTTCTCCAATATTTCTCATATGGTATTATGGCACTCTTGAGAAACAACCTCTTTACCTCACACAAGGTAGTAGGTATAACGTCTGAGTGCACTCTACCCACTCCAGATCCCACAACGGGTATGTTGTAGTTGTTGTTAGGTGCCAACTATAGAAAGATATAAAAGAGAATCCTGCAAACTTGCTATCTACATATGGGCTATGTACATTACTAAGAAAGAGGTCTATATTCACTGTACATTGCGTGTGACATTACTGGTTAAAAAATCTGCAATCAAATGTCACCTTTTAAGAGCTTGTGCCTTCAGTATATTTAGGTATCTTGGTGTACATATATAGAAGCACTTAAAAACAGTAGAGTATTACATTTTGCTGGAATCTGTATTCTCATGGATAATCACTTCATTTAAAAGTTGTAATTGTCCAATTCCATAAAAAAAATTCTATTGTCGCGAAAAGGGAACACTATATTTTTCTTGAAAATGTATATTTTCTATAATTCAACCCTTCACAAACTTTCTGTTTTTTCTGAGTGACATTTTTTTTGCACTGACTACACCAAATTTCCGCAGCCCCTCCCTTTACTGATTTTCAAACAATGCCACCGCTTTGTGTTTGCAATTTATTAAACCTATGCATTTTTTTTTATTTTTCCCATTTTATTCCTTATACAGGGAAAGGTTGAAACTACAATTGCAGGAGGAAGGGTTGTTTGGGAAAATGATGAGCTGAAAGTCATCCCTGGTGCTGGCAAGTACATTGAAATGCCACCTTTCAGTTATCTTTTTGACGGGATAGACAAGGCAGATGCAAAGTACCTCTCTTCCTTAAGAGCACCCGTAGAACGATCAACGACTTGATTTGGCAAATTCACTTTTTCATTATGAGGAAGAGGAATAGAAAGTCTCTCTCTATTTACTTGTAAATACAGAATATCCTTAAGGACATTCAAACTCTTGCAGTTGCTGAAAAACCCTTGGTCACATAATGCTATTTATAAAACTTATGTTTATTCCGTAAAGGATGTTATACATTGGTGTATAGCTGGATTACTGAATGGAGTTTGAGCATTTACCTCATA</genome_strand>
        <mrna_strand>CGAGCTATTCGTTTGGCCAGCTTTGTGAACACTCCATTGTATGTTGTTCATGTCATGAGTATTGACGCGATGGAAGAAATTGCCAGAGCTCGGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAGAATTGTTGGGGAGCCAGTCGTTTCAGGTTTACTTCTTAATGATTCAGTACTTTGGGATCCTGACTTCCATTTTGCAGCAAG..........................................................................................GTACGTCATGAGCCCACCAATCAGAGCAGCAGGTCATGGAACAGCTCTTCAAGCAGCTCTTGCTGCAGGGGTTCTGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTAGGAACTGATCACTGCACCTTCAACTCAACTCAGAAAGCGCTAGGAATTGGTGATTTCCGGAAAATACCAAATGGTGTTAATG........................................................................................GTATGGAGGAGAGAATGCATTTGGTTTGGAATACAATGGTG....................................................................................GCTTCTGGTCAGATATCTGTCACTGATTATGTTCGCATAACAAGCACAGAATG.....................................................................................................................................................................................................................................................................................................................................................................TGCTCGGATTTTCAATATCTATCCAAGGAAGGGAGCAATACTTGTTGGGTCTGATGCAGATATAATCATTTTAAATCCCAATTCAAGCTTCAAGATTAGTTCAAAGTCACACCATTATAGGACAGATACCAATGTCTATGAGGGTTGGACAGGCATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGGTTGAAACTACAATTGCAGGAGGAAGGGTTGTTTGGGAAAATGATGAGCTGAAAGTCATCCCTGGTGCTGGCAAGTACATTGAAATGCCACCTTTCAGTTATCTTTTTGACGGGATAGACAAGGCAGATGCAAAGTACCTCTCTTCCTTAAGAGCACCCGTAGAACGATCAACGACTTGATTTGGCAAATTCACTTTTTCATTAT------GAGGAACAGAAAGTCTCTCTCTATTTACTTGTAAATACAGAATATCCTTAAGGACATTCAAACTCTTGCAGTTGCTGAAAAACCCTTGGGCACATAATGCTATTTATAAAACTTATGTTTATTCCGTAAAGGATGTTATACATTGGTGTATAGCTGGATTACTGAATGGAGTTTGAGCATTTACCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327337" ref_strand="+" ref_description="SGN-U327337        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to expressed protein [Arabidopsis thaliana] (TAIR:At5g64850.1); contains InterPro domain Nitrate-induced NOI (InterPro:IPR008700) | chr5:6569270-6570682 FORWARD | Aliases: None(evalue: 2e-10, score=63.5) genbank/nr: unknown(evalue: 2e-08, score=63.5)">
      <seq>tttttttctatcttctttcacaatggcaaaacaaagggagagaaatggatcgccgtctgtacctcagtttggagcatggcatcacaagaccgcggacgatcttaatttttccatggtattctcccaagctcgtgcaaacaagaagcaaagtagacagaatatagcacaccacagcccaggaaatgagcaagaaatgcttggcaaacaccaacatgtatcaccaaggaaaagtagttctactccagtgcctcaagttggaccacgggattcaaaagatcgtgccaacaagaagccacataaacctgataaaacaccgaagcctaggcaatgagcaagaacttggcaagcaccaacaggcttccacaatggttcgtccaaagtctgtccctcaatttggagagtgggatcaaaagagtggggctagtcctgattactcgaaagtgtcctctcaagctcgtgccaacaagaagcagcataagcatgattcagcacaccgcagcttgggaaatgaacaagagcttggcaagcaccgtgaggtttcacccaggaaaaatagtcatatggcagagcctcattatggagtatgggatcagaagactgggaacagtccaaattatcccatggggttgtcccaggatcgtaccaaaaagaagcagcatagacatggtttagcacgccacagcatgggaactgagcaagagcttggtaaacacagagatgtttcacctgtgaaaattggttggatgtctgtacctcaatttggagagtgggagcaaaagactccgagtgagaccaattattctatggtgttctcacaagcgcgcgccaacagaaagaagcacaagagtgatttaactcatcgtagctatgactttgagcaggatcttctatccagggagcgagagaaagctgccacgaggaaaaagaagaagttcatgacctaccttagttgctgtcttcctgcatgatgctgtggtttttagtgtgagcgaggaccccctttgtagcaatcttgaactgactatttttctcctgtattcatacatgaaaacatgagagagttttatcatttttttcataagagtaaatatatatatatgcattcaagcctcttgcttggagtaaaaattaagaaaatttagcaacgttataatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="-" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="104708" stop="94896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104408" g_stop="104369" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104368" i_stop="103864" i_length="505">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103863" g_stop="103678" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="226" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103677" i_stop="103033" i_length="645">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103032" g_stop="102889" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="368" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="102888" i_stop="99628" i_length="3261">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99627" g_stop="99448" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="548" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99447" i_stop="97223" i_length="2225">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97222" g_stop="97040" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="731" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97039" i_stop="95863" i_length="1177">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95862" g_stop="95677" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="917" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95676" i_stop="95440" i_length="237">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95439" g_stop="95196" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1159" r_length="242" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1160" polyA_stop="1170"/>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="-" ref_id="SGN-U327337" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1163</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104408" e_stop="104369"/>
          <exon e_start="103863" e_stop="103678"/>
          <exon e_start="103032" e_stop="102889"/>
          <exon e_start="99627" e_stop="99448"/>
          <exon e_start="97222" e_stop="97040"/>
          <exon e_start="95862" e_stop="95677"/>
          <exon e_start="95439" e_stop="95196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTATCTTCTTTCACAATGGCAAAAGAAAGGGAGGTTTGTTTTATATACATTTTAAGTTATTCTTTTTAATGTTTTTTTTTGGTTATCTTGAAGATTGTTATTTTTCTTGGGTAATTCTCACATATTTGTTTCTGATTTTCTTTTTCTTTTGAAAATTGTTTTAAAGTTTTTTTTAAAAAAAATGTAAAACAAGAGAAAAAGTAAATGTTATTTATTTTTTTGACATAAATGATCATAAATATAAATGTAATTTTATGATTTTGTTTCCTTCTGTATTTTGGGTTTGTGGCCTACAAGAACAATGATTTCTATGGAATAAAAAGAAGAAAAAGAACAATAAAATAAAATCCATTTAATTATGTGAATTTCACATTGTTAACAACCTTTTCTTGGTTTAATTCTACATATTTCTTCCTTTTCATTTACAACAAATAACTACGATTCACATGATCATTCATGACATTCTTTTTCGTATCATGCATACTGAATAACTCGTATAGTCATCGTTTCATCAATGAAAGTTTATTTTTCTATATAGAGAAATGGATCGCCGTCTGTACCTCAGTTTGGAGCATGGCATCACAAGACCGCGGACGATCTTAATTTTTCCATGGTATTCTCCCAAGCTCGTGCAAACAAGAAGCAAAGTAGACAGAATATAGCACACCACAACCCAGGAAATGAGCAAGAAATGCTTGGCAAACACCAAGATGTATCACCAAGGGTAGAAATACTTTTTTCCTTATTATAGCATTAGGAAGATTCATTTGCATATATATATACATATACACATATAATCCTCGTTTAATATATCATGAGACTTTACCAAAGGTAATGGTTCGAGCCTTGGGAGTGGAGTTTTCCTTGTTGGGAGGGCTAAAACCCTCCATAATGAACTTTATATGGTGAAAATCCGGATTAGACTGGGCAACAAGTTAGGTATACAAGATGTTAAACAACAATGTTTCCTTTAGTGATACAATGTAAGCTTCTCGTTGGTATGGTACAAACCTTAGTTGTGCAAACTCTTCACTTTTGATGCCACACTTACGTCGGATTCACCAAAAATACACTACTTTTGGCAAATCTGACACACCTGTTGACATTTTTGAAGAGTCCGAGCAACATATAGGTAACTAAAGTGCATCAACCACTGGAATATCAACTAATAGAACATATAAACTATGATTGTCATTATGATCATTCATGACCAAACTTGCTGATTTTATCAAATATCATGTACTGTTTCTCTCCTTATGCAAGTTATATTAGTTTACAACACAATTAATTGCCTTTCATGTGTACCTTAGAGAGTGGGTAACTAATAGTATTATCATCATTTTAACAAATTGTGTTTCTAAATTTGTAGAAAAGTAGTTCTACTCCAGTGCCTCAAGTTGGACCACGGGATTCAAAAGATCGTGCCAACAAGAAGCCACATAAACCTGATAAAACACACCGAAGCCTAGGCAATGAGCAAGAACTTGGCAAGCACCAACAGGCTTCCACAATGGTATGAAAAATTACATCTCTTGTAAGCCTTAAATGGTTAATTTACGACGTCTACAGATGCATCTTCATTTAAGCATCATACAATTATCAAAGACAAACTTTCCTTTAATGTTATTGTTAGGATTTGTCTTTGGGGTGGAATTGCATGACTCCTTGCCAAGAAAATACTCACTCGTACCCACTACATGCACCAAACAAGCATAATTCGATACTTAGGTTTCACAAGTTTTCTAGAAAATGATATCTATTGGGTGTGTTCGGTATAGTAGGAAAGTATTTTTTTATTTTTCCCATATTCGATACTTGGTCAAATTTTTTGGAAAACTTTCTGAATAGTTCCTTAAAATGAAGAAAATGACTTCCAAAGTCGAAGTAGGAAAAACAAGTACCCCAAGTGGCAATCTAACTTGATTGTGTTCTCCCCACCCTCAAACACACCTCACCTTCATCTCTACCCCCTCCACCAATAGTATTTGTCTGCATTTTATCCAAATACTTTTAGGGTAATTTTTTTTGCTTATGTAGCAAACACAAGAAGATAAGTAAGAAACTCACTTATTTTCCTCAAAAACATAACAATATACCTAGTGTAATCCAGCAAGTGGAGTGTGAGGAGGGTGGTGAGTACGCAAACTTAACTAGACAACACTCGTCTACCTACTACCCTTCTATCATAATCTTTGACTTACATACCTTCCTTTCTAGGAACATACCTTAATAAGTTGAAGATGTGTCATGTCCTTCAAATCACCTCTGTATAATCTACTATAGCCAAATGTCATGCCTCCTTACTGGGGGGCATGTGTGCACCTCCTCTTCAGATGCCGAAATCATCTTGGTCTCGCCTCCATCATCTTGTCCACCATGGAGGCCACTTCCCCACTGTCTTGAATATCTTTGTTCCTAATCCTATCCCTCCTACTATGCCCACACATCTATCTCATCATCTTCATTTCAACTACTTTCATCTTACAGACATGTGAGCTCTTCATATGCCAACACTCTTCCCCATACAACAAAGTTGGTCTAACAACCACTCATAAAACTTACCTTTTAAGTCTTGGTGGCACATTCTTAACACACGAGACATAGGATGTGAGCCTCTATTTCGTCTGACCCACTCAATAGATGTGTAACTACATCATCAATATCCCCAGGTTCTCATTTGGCCCAAGCACCCTCAAACTTCTTCTTGCGAATAACCTCCTTAACCTCCTCAATTTTATACCTCTACAATACTCTAACTCTCGACAACTCTCGGAGTGCTCTAAAACTAGCACAATAATCATGTTCCGCTTTTCCTTCAAGAGTTCATAGAAGTATGTCTGCTATCGTCGTCTAATGTGTGCCTCCTTCACCAATACTTTCCTTTCCTGTCTTTGATGCACTTCATTTGGTCTAGGTCTTGGGCACTCCCCTCTTTTTCCTTAGGAGCCTATGCAACTTCTTGTCCCTGCCTTTGTCGTGTAATTATTCATACAAGTGCTAGAAGACTATTATTTTAGCCATTGTAGCAGCTGAATTCGCTCCCTTATTTCCACCTTATACCTCTCCCTATTTTCCCTCCCAGTGTTATCAAAGGCGAAAAGCGCAAAAAAACTCTAAGGTTCGTAGGGGCTTTAAGCGCAAACAAAGTGAGGGCTTTAAGGAAAAAAGGCGCAACGGGAGAAAAAGAAAACAAATATATATATTTAGTCCAAGACTAATAATTATAAACATGAATGACAAATATGACCAAAGAAATTGAAAAAATTTTATGATAAAGTGAAAGATCAATAATCTAGTGTTACTTTTTCATAAGAGGCTCATTGACAAGGAAACATTTGCCTTAGGACCTTGATGACGACACTGAAGTGCATATAAAGTGAGGTGTAGCGCTCAACATATTTTGAGCCTCACTTCAGAGCTTAAGCGCGCACTTTGATAATATTGTTCCCTCCTAGTCTTGTTGTCCATCAACTCCATATAAGCAACCTTCTTGACTTCTATTTTACCTTGGACTTCTCCAATCCACTACCATTCCCTCGATGTCCGACAACATTACCCCTCCAAACCCCAGGACCTCTCCAGCTAGTTCTCTAATGTAATCAGTTGTCATATTTCACATACTATTTGCATCCCCACTACTTCTGAAACCCAGTCACCATCAATTTCTCCCCATATCATGAGATTTGGTAATAATCAAGCCACCCCATTTTGATCCTCAGTAGGTCATGCAAAGCCCTCTTCTTCCCCTTAATCTCTAAATCCTTTACCGAGAGCTTATCTTAAGTTATAACATACTCACTCGGGTTAACCTTGAAGTCCTTATATATATAGATACTTTTATCACATTTCCTAAAGAGAAAGACATCTATTTGAGTCTTAGCCACCATGCTACAGAACATCACCAAGTGATCCTCTTTCTTGGGGAAACTTGAATTTGCTACAACAAAATCAAAAGCTTCAATGAAGTCCAAAAGTGAAACTCTTCCTTCATTTATATCCCTAAACCAAAACCCTATGTAGATCAACGTAACTACTTGACGTTGTCTTGATGTGGCCATTGAAATATCCTCCTATGAATATCTTCTCGGTGTGTGGAGACCCCTCACCACCTCATTCGAATCCTCCCTTAACTACTTTTTAACCTCTTCAACCAAATCCGTTTGTGGCGCATATGCACTAATTATGTTCAAGGTAATTCCTTCAGTGACTATCTCAATCCTCATCGTCATACTATCATTCACCCTCCTAACCTCAACCACTAAGCTCCCTAAGTTTCCTATTCAGTAAAATGCCTACTTAATTTATATTCCCGAGCCTCCGCAGTACCACAATTTAAACCTGTCAACATCTCAAGCATAAGTCCCCACCCATATGGTCTCCTGAACACAAGTTATATTGATCCTCCTCCCCTTGAGAACCTTCAATGACTGTATAGACTTTCCCGTGAAAGTATCTATGTTCAGCTTCCTTGTAACCCTAGAATCCCGCCCCCAGCCCCACCCGAGGACATGTCCTTACTCTACCATCATTCACCAAAGCAACAATAATTTATAAGCTACTATAATGAAGGGTTTACTAAACTAACACCATGACAATAAAGAGTCTAAAATAAATGAATGAGAACTAAACTTAAAGGCACTAATCGAGAATAAAGATACGTTGGGGAACTAAAAAATTAAAGATAGGTTGGGGAACCAAAAAAAATTTACTTCATAATGAACACACCCACAGTGCTATTGTTTCTCTAAAATATTTTTCATATAAATTGTTTAAGGTTCGTCCAAAGTCTGTCCCTCAATTTGGAGAGTGGGATCAAAAGAGTGGGGGTAGTCCTGATTACTCGAAAGTGTCCCCTCAAGCTTGTGCCAACAAGAAGCAGCATAAGCATGATTCAGCACACCGCAGCTTGGGAAATGAACAAGAGCTTGGCAAGCACCGTGAGGTTTCACCCAGGGTAAGAAATGTTTTTTTAACTTATAAGATACAAGACAAACTTCTCTTCAGCTGTACAATAGAAAATGTATTTGGTACAGTAAATAACATGATTACTACCCCCTATTCTGCATGTCGTTAGACAATTTAGAGCATGAATAGTAATGCCGTTCACTTAGGGGAGCAAATGACCTTAGGGGTTTCAACATTGTTCCTACTTTCTCCCTACACGACTTGAAAGGCTCGACCAACCAGTTATAGGAGGAGATGCTTAACCAGTAAAAGATAACAAAATTTTCTAGCATTTAAAGGGGTCCTCCATATGAAACAAGTAGGAAAATAGTAAAGGTAAGAAAGTGATAGTATGGTTTTGCTTGAGAACAAAAGACTGAAAATCCTTCAAATCTTTTTCAGATAGGTATACATGAGAACAATAGGTTCTGTCAGCAGTCTAAAAATATAGATTACTGTTTAAAACCTTCTCAAAATAGATTGTCTAAACCCATCTTCCCAACCGAGATAGGAGTGTCTACTGGGGGTTGGGAAAGGTTATGAAGTTGTTTCTATGTATCATGTATTAAGATTTAACTCAATCTACTTGTGCATTTTACTAGATCTATTACCAACTGCTGGTCTGAAGATTAGCAATTGCACCACTGACTAGGAAGGAAATATTCATACATCATCCCACACAACTCTAGTCTGGATAGTTTGTTATGGGTGACGCTGTGCTAACAACGAGGGAATTTGTACAAGGCGTCAAGGATGAGAACAATTACATGAGAAAATATAATGCATCTCAAAGGTGTGGCAAAGACATGAGGATTCAAATTACAGTGTCAAAATTATACATAATCTAAGGCCTTTTGGCAATTCTAGTCAAGTTAGATCATTCACACTGTCCTAGAACTTCGTAAAAAGAAAGGAAAAAAAAGAAGTAGATGAACTTTCTGGCGCAATAGCTCTAAAATGCACCGACAAAATTGAATATATGTGACAGTTCACAACATATGTGAATTTAATTCCAGTTTTAACACTACATACATTATGATTTGGTTAACTTCACTTGATAAAACTATGAGTGTGTTTGGTACGAATGAAAACTTTTTTTGGAAAATGTTTTCCAATTTTCTCATATTTGGTTGGGACAAAAGTTTTGGAAAATGTTTTCCAAATCAACTCATTTTCCTCAAAATTAAGGAAAATGACTTCCCTTCAAAAATTTAGGAAAATATTTTCCAAAACTCTCCTCCAATTTTAAATTACATTTTTTTTTTGGAAAAACAACAATTTTTCAAAAAAAATAATTCAATTTTAAAATTTTATCTTTTTACCCGATCCCTAACCCGCACCCATCCACCACCGGCCAGCCCCCCCCCCCCCCCAAAAAAAAAAATTTTGCTTTTTAAAAATATTTTTCAACTTCAAATTTTTATTTTTAAACTCCCCGCCAGCCCCCCACCCATCCCAACCCCCAAAAAAATTAGTTTATTTTTTAAAAATACTATAAAGTCAAATATTTATTTTCTCTCCTGCTCCCTCCCCCACCCCACCCCCCACCCCAATTAAAATTTGTTTTTAAAAAATATTTTCAATTTCATAAATTATTTTCTACTCTAGTAAAAATAAAATGTCTCTCAAAAACATTTTTCATTCATAAATCAAACAAAAAATCATTTTCAGAAAATATTTTCTGCTCACTAACCAAACATGAGAAAAAAGTCCAAAATCTACTTATTTTCCAGGAAAACATTTTCCTTCATACGAAACACACCCTATGTTCATCATGGTTTGTTCAATTTCATTGACTACAGGAATATCAACAATGTTTCACATGATCATCATTCATAACCTTGTTTCAATTTTATAATTCTTGGACATCCTACATCAGTGGGGATGTGGTCCATTGTCCTCCTTATGTGGTCTTGGAAAACCTTCACCTCTTGAGCTAGCTTTTGGGGCTAAGTTAGGACCAAAGTATTATTTTTAATTATCATAGTATCAAAGTTAGGCTAATCCTAATTATTGATTTACCCGATGTTGGCCCCCATATTATGTTGTTCACTCTCCAGTTGCCATGTCTGGGCATGCGGGGGATGTCGAATAACTTTTCAACTTACATAGTCTATGCTATTGTTAATGTTTCAAAACTTAGATAACATTTCGAGTGTTCTAGAGAGTGAGTTACTCATAGTGTTATTGTGTCACTGATAGTTTTTTTTTTTTTTAATCTTTCTGAGTTTTTAGAAAAATAGTCATACGGCAGAGCCTCATTGTGGAGCATGGGATCAGAAGACTGGGAACAGTCCAAATTATCCCATGGGGTTGTCCCACGATCGTGCCAAAAAGAAGCAGCATAGACATGGTTTAGCACGCCACAGCATGGGAACTGAGCAAGAGCTTGGTAAACACAGAGATGTTTCACCTGTGGTAAGAACTTTTTTTTTTCTAAATTTGAGATAAGCTTGAAACTGAAATTTTGAAATCCCTGGAATTCTTTCAATTCGATATCTAATTTTGTGATCTTGTGGGATCAAAATCGAAATATCTGCTGTTTGAGGTTTAGAAGATATCAAACATTGTCGAAAAAAAATTGGAACTTCAAACTTGGCTTTCTATTTTTGGATATTTGTGGAGTACTTGGCACTTTGAGATCGATTTTGGGTTATTTGAGCTCAAAAGATTGAAAGACAATGTACCAGTTTGAAGGTTCGAAGCTTGAAGAAAGAAACTAGAAACACCTTTAAGCCCACTTCGAACTTGAAAATTTTGAGAATGACATATAAGACTTTGTTTTGATCGGATATTTTTAAATCTTTTTCATAGAAGTTTAGTCATATATGCCAGAAGTTCATCCATATATGCCAACTTCAGACACTAGGCTTTGGAAAGACAAACTTCTAAATGCATATGTCAGAAGCTTGTGAAGCTAATTTCGAAGCGGTTACACTTGGAAAAAACTATGATCTTCGGCTATGCCTTAAATAAGAGTCCTAAAATCTTTATCTGTGCTTTTGCCCCAAACTTTCTTCTAGGCAAATAAAAGAGACTTGTTTTTGGTTTGGTAAATGCATGATTACTGGCCTCTATGAACCGTATTCACAAGATGAATATCATAGAAATATGGATGTTAACATAGATGGGTTGTCATACAAGATTGGAAAAGAGTAGCAGGACACATCTAATACAGTGTGAACCTAACACAGGATAAAATGAGAGAATGTCTCTTAGGATGGTTTGGTCACGTCTTGTAGACCTTCATATGAACTGTAACTTATGATGAAAACATGATGATAAAAGATAAACGGAAAATAATCCTGAAAGTAATGAGTCAAATTCGATGTAGGATGTAAACTAAACCTAGCATAGACCTCCATACATACCAGTAAGCTGGTATGGAAGTATTCCCTTTACAGTAGTCTGTCTATCAAATTATTTATTTAGCTAACAAGTAATGTGATCATTTTGTTCACATTTTTAATCAAGCATTTCAATGTTGTATTAGTCATGAATTTGATATTAATCATCCATAAACTACTATGAGATTGTACAAGAAAGACACTCACCAGCTCTTAATAACTTATCAGATGGTTTCATAAATCTGTAGAAAATTGGTTGGATGTCTGTACCTCAATTTGGAGAGTGGGAGCAAAAGACTCCGAGTGAGACCAATTATTCTATGGTGTTCTCACAAGCGCGCGCAAACAGAAAGAAGCACAAGAGTGATTTAACTCATCGTAGCTATGACTTTGAGCAGGATCTTCTATCCAGGGAGCGAGAGAAAGCTGCCACGGTAAGACATCCTAATCTCCAAAAGATTATGTTACAGTAAAGCATCTACAATACTGTATTATAATATTCTCAAGACAGAATTTCCTCAAGTATCAGATAGAAGGGCATATTGGGGTTTGTTCTGATCCATATACGTCCTTGCTTGACGCCCTTGGATCACAATATGCCAAACAGTATGTACCAACATAGCTTTAGTTTGTGGTTACCTCTAATCATTTTGAACATCTCCTTTGTGCAGAGGAAAAAGAAGAAGTTCATGACCTACCTTAGTTGTTGTCTTCCTGCATGATGCCGTGGTTTTTAGTGTGAGCGAGGACCCCCTTTGTAGCAATCTTGAACTGACTATTTCTCTCCTGTATTCATACATGAAAACATGAGAGAGTTTTATCATTTTTCATCAGAGTATATATATATATATATATGCATTCAAGCCTCTTGCTTGGAGTAAAAATTAAGAAAATTTAGCAACGTTATAATCAAAA</genome_strand>
        <mrna_strand>TTTTTTTCTATCTTCTTTCACAATGGCAAAACAAAGGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGGATCGCCGTCTGTACCTCAGTTTGGAGCATGGCATCACAAGACCGCGGACGATCTTAATTTTTCCATGGTATTCTCCCAAGCTCGTGCAAACAAGAAGCAAAGTAGACAGAATATAGCACACCACAGCCCAGGAAATGAGCAAGAAATGCTTGGCAAACACCAACATGTATCACCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTAGTTCTACTCCAGTGCCTCAAGTTGGACCACGGGATTCAAAAGATCGTGCCAACAAGAAGCCACATAAACCTGAT-AAA-ACACCGAAGCCTAGGCAATGAGCAAGAACTTGGCAAGCACCAACAGGCTTCCACAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTCCAAAGTCTGTCCCTCAATTTGGAGAGTGGGATCAAAAGAGTGGGGCTAGTCCTGATTACTCGAAAGTGTCCTCTCAAGCTCGTGCCAACAAGAAGCAGCATAAGCATGATTCAGCACACCGCAGCTTGGGAAATGAACAAGAGCTTGGCAAGCACCGTGAGGTTTCACCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATAGTCATATGGCAGAGCCTCATTATGGAGTATGGGATCAGAAGACTGGGAACAGTCCAAATTATCCCATGGGGTTGTCCCAGGATCGTACCAAAAAGAAGCAGCATAGACATGGTTTAGCACGCCACAGCATGGGAACTGAGCAAGAGCTTGGTAAACACAGAGATGTTTCACCTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGGTTGGATGTCTGTACCTCAATTTGGAGAGTGGGAGCAAAAGACTCCGAGTGAGACCAATTATTCTATGGTGTTCTCACAAGCGCGCGCCAACAGAAAGAAGCACAAGAGTGATTTAACTCATCGTAGCTATGACTTTGAGCAGGATCTTCTATCCAGGGAGCGAGAGAAAGCTGCCACG.............................................................................................................................................................................................................................................AGGAAAAAGAAGAAGTTCATGACCTACCTTAGTTGCTGTCTTCCTGCATGATGCTGTGGTTTTTAGTGTGAGCGAGGACCCCCTTTGTAGCAATCTTGAACTGACTATTTTTCTCCTGTATTCATACATGAAAACATGAGAGAGTTTTATCATTTTT-TTCATAAGA-GTAAATATATATATATGCATTCAAGCCTCTTGCTTGGAGTAAAAATTAAGAAAATTTAGCAACGTTATAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0119D16-WY1n2/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0119D16.2" temp_strand="+" temp_description="C11HBa0119D16.2  AC171735.3 htgs_phase:3 submitted_to_sgn_as:Contig25 sequenced_by:cornell upload_account_name:us">
        <position start="107125" stop="108190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107425" g_stop="107888" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0119D16.2" gen_strand="+" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0119D16.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107425" e_stop="107888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCA-CCCATACCCACAACATCTCTAGCCCGGTCCATTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCTCCCGTGCCACCCCCCAATACTCATTCCATGTTAACCCGTGGCAAAGCCGGTATTTTTAAACTCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAAGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGTCCCATAGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="26113" PGL_stop="35035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26113" e_stop="26219"/>
            <exon e_start="27001" e_stop="27163"/>
            <exon e_start="27299" e_stop="27519"/>
            <exon e_start="27933" e_stop="28068"/>
            <exon e_start="30046" e_stop="30179"/>
            <exon e_start="30292" e_stop="30397"/>
            <exon e_start="33706" e_stop="33791"/>
            <exon e_start="34944" e_stop="35035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.686" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.822" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26113" e_stop="26219" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.686" acc_prob="0.991">
            <gDNA_intron_boundary i_start="26220" i_stop="27000" i_length="781"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27001" e_stop="27163" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27164" i_stop="27298" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27299" e_stop="27519" e_length="221"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.741">
            <gDNA_intron_boundary i_start="27520" i_stop="27932" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27933" e_stop="28068" e_length="136"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28069" i_stop="30045" i_length="1977"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30046" e_stop="30179" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.822" acc_prob="0.889">
            <gDNA_intron_boundary i_start="30180" i_stop="30291" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30292" e_stop="30397" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="30398" i_stop="33705" i_length="3308"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33706" e_stop="33791" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.976">
            <gDNA_intron_boundary i_start="33792" i_stop="34943" i_length="1152"/>
          </intron>
          <exon e_serial="8" e_score="0.946">
            <gDNA_exon_boundary e_start="34944" e_stop="35035" e_length="92"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26113" stop="26219"/>
              <exon start="27001" stop="27163"/>
              <exon start="27299" stop="27519"/>
              <exon start="27933" stop="28068"/>
              <exon start="30046" stop="30179"/>
              <exon start="30292" stop="30397"/>
              <exon start="33706" stop="33791"/>
              <exon start="34944" stop="35035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATATATATGCTCTTCTTCACCTGACTCCATTTTCACTTTTCTTGATCTCTCTCTCAAGAGATTTATCTGCTGCACTTTTTTGAATCAATCAATCTTAAAGAAAG : ATCTTCTAAGCTGAAGAACATGTGGTGGTTGTGATACAAACAAACAAGTTGCAGTTATATCTCTAAAGTAGGGCGGGTAGTAGAATGGGCTGTGAGTCTTCTAAACTCGCCTCGTGTTGCTGGAGTGGACAGAATGGTCCTGTTCATGAGGCTCAGAATCCTG : GTGATGAAGAAAGAGCTGAAGTTAGTGATTTGCCTACATTCCGCGAGTTTACTGTTGAGCAGCTGAGAATATCTACTTCTGGATTTGCTGTAGAGAATATAGTTTCAGAACATGGTGAAAAAGCTCCTAATGTTGTTTATAAAGGAAAGTTAGAGAACCAGAGGAGAGTTGCTGTCAAACGCTTTAATAGATCTGCATGGCCTGATTCCCGACAGTTCTTA : GAAGAAGCCAGATCAGTTGGTCAACTCCGCAACAATAGGTTAGCAAATCTTCTTGGTTGTTGTTGCGAAGGTGATGAGAGGTTGCTTGTGGCAGAATTTATGCCCAATGAGACACTTGCAAAGCATCTCTTTCACT : GGGAGACACAACCCATGAAATGGGCAATGCGGTTAAGGGTGGCTTTGTATCTTGCACAGGCTCTCGAGTATTGTACAATCAGAGGGAGGGCACTTTATCATGATCTTAATGCATATAGAATATTATTTGATGAA : GAAGGCGACCCCCGTCTCTCTTGCTTTGGTTTGATGAAAAATAGTCGAGATGGAAAAAGTTACAGCACAAACTTGGCATTTACTCCTCCTGAATATTTGAGGACAG : GGAGAATCACCCCGGAGAGTGTCATGTATAGCTTCGGAACACTCTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGTCAT : GCCCTTGATCTGATTAAAGACCGGAATCTTCAGATGCTTACGGATTCTTGCTTGGAAGGTCAATTTTCTTCTGATGATGGGACTGAATTGGT</gDNA_template>
            <first_frame> Y  I  Y  M  L  F  F  T  *  L  H  F  H  F  S  *  S  L  S  Q  E  I  Y  L  L  H  F  F  E  S  I  N  L  K  E  R :   S  S  K  L  K  N  M  W  W  L  *  Y  K  Q  T  S  C  S  Y  I  S  K  V  G  R  V  V  E  W  A  V  S  L  L  N  S  P  R  V  A  G  V  D  R  M  V  L  F  M  R  L  R  I  L  :  V  M  K  K  E  L  K  L  V  I  C  L  H  S  A  S  L  L  L  S  S  *  E  Y  L  L  L  D  L  L  *  R  I  *  F  Q  N  M  V  K  K  L  L  M  L  F  I  K  E  S  *  R  T  R  G  E  L  L  S  N  A  L  I  D  L  H  G  L  I  P  D  S  S  * :   K  K  P  D  Q  L  V  N  S  A  T  I  G  *  Q  I  F  L  V  V  V  A  K  V  M  R  G  C  L  W  Q  N  L  C  P  M  R  H  L  Q  S  I  S  F  T  :  G  R  H  N  P  *  N  G  Q  C  G  *  G  W  L  C  I  L  H  R  L  S  S  I  V  Q  S  E  G  G  H  F  I  M  I  L  M  H  I  E  Y  Y  L  M  K :   K  A  T  P  V  S  L  A  L  V  *  *  K  I  V  E  M  E  K  V  T  A  Q  T  W  H  L  L  L  L  N  I  *  G  Q  :  G  E  S  P  R  R  V  S  C  I  A  S  E  H  S  C  L  T  F  S  V  E  N  I  F  L  Q  V  M :   P  L  I  *  L  K  T  G  I  F  R  C  L  R  I  L  A  W  K  V  N  F  L  L  M  M  G  L  N  W  </first_frame>
            <second_frame>  I  Y  I  C  S  S  S  P  D  S  I  F  T  F  L  D  L  S  L  K  R  F  I  C  C  T  F  L  N  Q  S  I  L  K  K   : D  L  L  S  *  R  T  C  G  G  C  D  T  N  K  Q  V  A  V  I  S  L  K  *  G  G  *  *  N  G  L  *  V  F  *  T  R  L  V  L  L  E  W  T  E  W  S  C  S  *  G  S  E  S  W :   *  *  R  K  S  *  S  *  *  F  A  Y  I  P  R  V  Y  C  *  A  A  E  N  I  Y  F  W  I  C  C  R  E  Y  S  F  R  T  W  *  K  S  S  *  C  C  L  *  R  K  V  R  E  P  E  E  S  C  C  Q  T  L  *  *  I  C  M  A  *  F  P  T  V  L   : R  R  S  Q  I  S  W  S  T  P  Q  Q  *  V  S  K  S  S  W  L  L  L  R  R  *  *  E  V  A  C  G  R  I  Y  A  Q  *  D  T  C  K  A  S  L  S  L :   G  D  T  T  H  E  M  G  N  A  V  K  G  G  F  V  S  C  T  G  S  R  V  L  Y  N  Q  R  E  G  T  L  S  *  S  *  C  I  *  N  I  I  *  *   : R  R  R  P  P  S  L  L  L  W  F  D  E  K  *  S  R  W  K  K  L  Q  H  K  L  G  I  Y  S  S  *  I  F  E  D  R :   E  N  H  P  G  E  C  H  V  *  L  R  N  T  L  A  *  P  S  Q  W  K  T  Y  S  S  K  S   : C  P  *  S  D  *  R  P  E  S  S  D  A  Y  G  F  L  L  G  R  S  I  F  F  *  *  W  D  *  I  G </second_frame>
            <third_frame>   Y  I  Y  A  L  L  H  L  T  P  F  S  L  F  L  I  S  L  S  R  D  L  S  A  A  L  F  *  I  N  Q  S  *  R  K  :  I  F  *  A  E  E  H  V  V  V  V  I  Q  T  N  K  L  Q  L  Y  L  *  S  R  A  G  S  R  M  G  C  E  S  S  K  L  A  S  C  C  W  S  G  Q  N  G  P  V  H  E  A  Q  N  P   : G  D  E  E  R  A  E  V  S  D  L  P  T  F  R  E  F  T  V  E  Q  L  R  I  S  T  S  G  F  A  V  E  N  I  V  S  E  H  G  E  K  A  P  N  V  V  Y  K  G  K  L  E  N  Q  R  R  V  A  V  K  R  F  N  R  S  A  W  P  D  S  R  Q  F  L  :  E  E  A  R  S  V  G  Q  L  R  N  N  R  L  A  N  L  L  G  C  C  C  E  G  D  E  R  L  L  V  A  E  F  M  P  N  E  T  L  A  K  H  L  F  H   : W  E  T  Q  P  M  K  W  A  M  R  L  R  V  A  L  Y  L  A  Q  A  L  E  Y  C  T  I  R  G  R  A  L  Y  H  D  L  N  A  Y  R  I  L  F  D  E  :  E  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  R  T   : G  R  I  T  P  E  S  V  M  Y  S  F  G  T  L  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  K  D  R  N  L  Q  M  L  T  D  S  C  L  E  G  Q  F  S  S  D  D  G  T  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27067" stop="27163"/>
                    <exon start="27299" stop="27519"/>
                    <exon start="27933" stop="28068"/>
                    <exon start="30046" stop="30179"/>
                    <exon start="30292" stop="30397"/>
                    <exon start="33706" stop="33791"/>
                    <exon start="34944" stop="35033"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRAGSRMGCESSKLASCCWSGQNGPVHEAQNPGDEERAEVSDLPTFREFTVEQLRISTSGFAVENIVSEHGEKAPNVVYKGKLENQRRVAVKRFNRSAWPDSRQFLEEARSVGQLRNNRLANLLGCCCEGDERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTIRGRALYHDLNAYRILFDEEGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRITPESVMYSFGTLLLDLLSGKHIPPSHALDLIKDRNLQMLTDSCLEGQFSSDDGTEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35068" PGL_stop="38844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35068" e_stop="35132"/>
            <exon e_start="36658" e_stop="36810"/>
            <exon e_start="37787" e_stop="37900"/>
            <exon e_start="38218" e_stop="38844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="0.985"/>
          <exon-intron don_prob="0.995" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="35068" e_stop="35132" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="35133" i_stop="36657" i_length="1525"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36658" e_stop="36810" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.905">
            <gDNA_intron_boundary i_start="36811" i_stop="37786" i_length="976"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37787" e_stop="37900" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37901" i_stop="38217" i_length="317"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="38218" e_stop="38844" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35068" stop="35132"/>
              <exon start="36658" stop="36810"/>
              <exon start="37787" stop="37900"/>
              <exon start="38218" stop="38844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACGTGAGCGTCCAAATCCAAAGTCACTGGTTGCTGCTTTATTTCCTCTTCAGAAAGAGACCGAG : GTTCCTTCTCATGCTTTGATGGGTATCTCACGTGATGGTGGAACTATGCCTCTGTCTCCACTTGGTGAAGCCTGCTTGAGAATGGATCTAACAGCCATCCATGAGATTTTAGAACAGCTTGGGTACAAAGACGATGAAGGAGCAGCTACTGAG : CTTTCATTCCAGATGTGGACAAATCAGATGCAGGAAACGTTGAACTCCAAGAAAAAGGGTGATTCTGCTTTCAGGCACAAAGATGCTAAGGCCGCCATCGAATGCTATACACTG : TTTATCGATGTTGGAACTATGGTCTCCCCAACTGTGTATGCACGGCGTAGTCTGTCTTATCTCATGAATGATATGCCACTGGAAGCCCTCAATGATGCAGTACAGGCACAAGTAATATCTCCTGTATGGCATGTTGCTTCGTATTTACAAGCTGCTTCTCTCTTTGCACTTGGAAGGGAAAATGAGGCACAAATTGCACTCAAGGAAGGTTCTGTTCTTGAAGAAAAGAAGAACACAAATTCCTGAAAGTGGCAAGTTAAGCCACTCTGATCGTTATTTAATTGCTCCGTTGCTAATGGTGTTTGGACATGGATCACAAAAAGTTCACCGGTGAGAGGCTATTCAATCTATTGCCTCGTGCATGCGATCATTAAGTAGGTTTGGTTTTACTTCAGAGCATTCTTTTGCTACATATAATTGGATGGGGTTGGTTTTGGTCACAGCTTTTGTGGACAGGTTATCTAAGCGCTCCGGTTGAAATGGATTGACATTTTCCAATAAACAAACTATTCTCTGTGGGAATAATCAAATGCCGTTGGTTCCATAAGGATCCAACATCTGTGGGGGGAAAAAGGAAAGCTGGAGAAACTTCCTGTGCTGTAATTTATGTACAGTGCTATTTAGCTG</gDNA_template>
            <first_frame> H  V  S  V  Q  I  Q  S  H  W  L  L  L  Y  F  L  F  R  K  R  P  R :   F  L  L  M  L  *  W  V  S  H  V  M  V  E  L  C  L  C  L  H  L  V  K  P  A  *  E  W  I  *  Q  P  S  M  R  F  *  N  S  L  G  T  K  T  M  K  E  Q  L  L  S :   F  H  S  R  C  G  Q  I  R  C  R  K  R  *  T  P  R  K  R  V  I  L  L  S  G  T  K  M  L  R  P  P  S  N  A  I  H  C :   L  S  M  L  E  L  W  S  P  Q  L  C  M  H  G  V  V  C  L  I  S  *  M  I  C  H  W  K  P  S  M  M  Q  Y  R  H  K  *  Y  L  L  Y  G  M  L  L  R  I  Y  K  L  L  L  S  L  H  L  E  G  K  M  R  H  K  L  H  S  R  K  V  L  F  L  K  K  R  R  T  Q  I  P  E  S  G  K  L  S  H  S  D  R  Y  L  I  A  P  L  L  M  V  F  G  H  G  S  Q  K  V  H  R  *  E  A  I  Q  S  I  A  S  C  M  R  S  L  S  R  F  G  F  T  S  E  H  S  F  A  T  Y  N  W  M  G  L  V  L  V  T  A  F  V  D  R  L  S  K  R  S  G  *  N  G  L  T  F  S  N  K  Q  T  I  L  C  G  N  N  Q  M  P  L  V  P  *  G  S  N  I  C  G  G  K  K  E  S  W  R  N  F  L  C  C  N  L  C  T  V  L  F  S   </first_frame>
            <second_frame>  T  *  A  S  K  S  K  V  T  G  C  C  F  I  S  S  S  E  R  D  R   : G  S  F  S  C  F  D  G  Y  L  T  *  W  W  N  Y  A  S  V  S  T  W  *  S  L  L  E  N  G  S  N  S  H  P  *  D  F  R  T  A  W  V  Q  R  R  *  R  S  S  Y  *   : A  F  I  P  D  V  D  K  S  D  A  G  N  V  E  L  Q  E  K  G  *  F  C  F  Q  A  Q  R  C  *  G  R  H  R  M  L  Y  T   : V  Y  R  C  W  N  Y  G  L  P  N  C  V  C  T  A  *  S  V  L  S  H  E  *  Y  A  T  G  S  P  Q  *  C  S  T  G  T  S  N  I  S  C  M  A  C  C  F  V  F  T  S  C  F  S  L  C  T  W  K  G  K  *  G  T  N  C  T  Q  G  R  F  C  S  *  R  K  E  E  H  K  F  L  K  V  A  S  *  A  T  L  I  V  I  *  L  L  R  C  *  W  C  L  D  M  D  H  K  K  F  T  G  E  R  L  F  N  L  L  P  R  A  C  D  H  *  V  G  L  V  L  L  Q  S  I  L  L  L  H  I  I  G  W  G  W  F  W  S  Q  L  L  W  T  G  Y  L  S  A  P  V  E  M  D  *  H  F  P  I  N  K  L  F  S  V  G  I  I  K  C  R  W  F  H  K  D  P  T  S  V  G  G  K  R  K  A  G  E  T  S  C  A  V  I  Y  V  Q  C  Y  L  A  </second_frame>
            <third_frame>   R  E  R  P  N  P  K  S  L  V  A  A  L  F  P  L  Q  K  E  T  E  :  V  P  S  H  A  L  M  G  I  S  R  D  G  G  T  M  P  L  S  P  L  G  E  A  C  L  R  M  D  L  T  A  I  H  E  I  L  E  Q  L  G  Y  K  D  D  E  G  A  A  T  E  :  L  S  F  Q  M  W  T  N  Q  M  Q  E  T  L  N  S  K  K  K  G  D  S  A  F  R  H  K  D  A  K  A  A  I  E  C  Y  T  L  :  F  I  D  V  G  T  M  V  S  P  T  V  Y  A  R  R  S  L  S  Y  L  M  N  D  M  P  L  E  A  L  N  D  A  V  Q  A  Q  V  I  S  P  V  W  H  V  A  S  Y  L  Q  A  A  S  L  F  A  L  G  R  E  N  E  A  Q  I  A  L  K  E  G  S  V  L  E  E  K  K  N  T  N  S  *  K  W  Q  V  K  P  L  *  S  L  F  N  C  S  V  A  N  G  V  W  T  W  I  T  K  S  S  P  V  R  G  Y  S  I  Y  C  L  V  H  A  I  I  K  *  V  W  F  Y  F  R  A  F  F  C  Y  I  *  L  D  G  V  G  F  G  H  S  F  C  G  Q  V  I  *  A  L  R  L  K  W  I  D  I  F  Q  *  T  N  Y  S  L  W  E  *  S  N  A  V  G  S  I  R  I  Q  H  L  W  G  E  K  G  K  L  E  K  L  P  V  L  *  F  M  Y  S  A  I  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35070" stop="35132"/>
                    <exon start="36658" stop="36810"/>
                    <exon start="37787" stop="37900"/>
                    <exon start="38218" stop="38463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RERPNPKSLVAALFPLQKETEVPSHALMGISRDGGTMPLSPLGEACLRMDLTAIHEILEQLGYKDDEGAATELSFQMWTNQMQETLNSKKKGDSAFRHKDAKAAIECYTLFIDVGTMVSPTVYARRSLSYLMNDMPLEALNDAVQAQVISPVWHVASYLQAASLFALGRENEAQIALKEGSVLEEKKNTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="43706" PGL_stop="39764"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43706" e_stop="43590"/>
            <exon e_start="42749" e_stop="42634"/>
            <exon e_start="41825" e_stop="41658"/>
            <exon e_start="40835" e_stop="40708"/>
            <exon e_start="40083" e_stop="39984"/>
            <exon e_start="39842" e_stop="39764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.974"/>
          <exon-intron don_prob="0.994" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="43706" e_stop="43590" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43589" i_stop="42750" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42749" e_stop="42634" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.937">
            <gDNA_intron_boundary i_start="42633" i_stop="41826" i_length="808"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41825" e_stop="41658" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41657" i_stop="40836" i_length="822"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40835" e_stop="40708" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40707" i_stop="40084" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40083" e_stop="39984" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39983" i_stop="39843" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39842" e_stop="39764" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43706" stop="43590"/>
              <exon start="42749" stop="42634"/>
              <exon start="41825" stop="41658"/>
              <exon start="40835" stop="40708"/>
              <exon start="40083" stop="39984"/>
              <exon start="39842" stop="39764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339913" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACATATTGATTTTTCAAGTGATCCATGGCCTTCAATTTCACATGGTGCCAAAGATATTGTTAGGAAAATGTTGACTTCAGATCCCAAACAGAGGTTAACAGCAATCCAAGTGTTAA : ATCATCCATGGATCAAGGAGGATGGAGATGCACCAGATACACCACTTGACAATGCTGTTTTAAGTAGACTCAAACAATTTAGAGCCATGAACAATTTCAAGAAAGTTGCTCTCCGG : GTTATTGCAGGATGTTTATCAGAGGAAGAAATAATGGGATTAAAGCAAATGTTCAAAAGTATGGATGCTGATAATAGTGGAGCAATAACACTTGAGGAGCTAAAACAAGGACTTGCCAAACAAGGAACTAAATTATCTGATTATGAAATTCAACAATTAATGGAAGCT : GCTGATGCTGATGGAAATGGAACCATAGATTATGAAGAATTTATTACAGCAACAATGCACATGAACAGAATGGACAAAGAAGAACATCTTTACACAGCATTCCAATATTTTGACAAGGATAATAGTGG : GTACATCACAATAGAAGAGTTAGAGCAAGCTTTAAGAGAATTTGGTATTGATGATGGAAAGGACATACAAGATATTGTTGCTGAAGTTGACTCAAATAAT : GATGGTCGAATTAATTATGATGAATTTGCAGCTATGATGAGAAAAGGAAGTCCAGAAACAACAGCAAATATAAAAAAAA</gDNA_template>
            <first_frame> D  I  L  I  F  Q  V  I  H  G  L  Q  F  H  M  V  P  K  I  L  L  G  K  C  *  L  Q  I  P  N  R  G  *  Q  Q  S  K  C  *  :  I  I  H  G  S  R  R  M  E  M  H  Q  I  H  H  L  T  M  L  F  *  V  D  S  N  N  L  E  P  *  T  I  S  R  K  L  L  S  G :   L  L  Q  D  V  Y  Q  R  K  K  *  W  D  *  S  K  C  S  K  V  W  M  L  I  I  V  E  Q  *  H  L  R  S  *  N  K  D  L  P  N  K  E  L  N  Y  L  I  M  K  F  N  N  *  W  K  L :   L  M  L  M  E  M  E  P  *  I  M  K  N  L  L  Q  Q  Q  C  T  *  T  E  W  T  K  K  N  I  F  T  Q  H  S  N  I  L  T  R  I  I  V   : G  T  S  Q  *  K  S  *  S  K  L  *  E  N  L  V  L  M  M  E  R  T  Y  K  I  L  L  L  K  L  T  Q  I  M :   M  V  E  L  I  M  M  N  L  Q  L  *  *  E  K  E  V  Q  K  Q  Q  Q  I  *  K  K </first_frame>
            <second_frame>  T  Y  *  F  F  K  *  S  M  A  F  N  F  T  W  C  Q  R  Y  C  *  E  N  V  D  F  R  S  Q  T  E  V  N  S  N  P  S  V  K :   S  S  M  D  Q  G  G  W  R  C  T  R  Y  T  T  *  Q  C  C  F  K  *  T  Q  T  I  *  S  H  E  Q  F  Q  E  S  C  S  P   : G  Y  C  R  M  F  I  R  G  R  N  N  G  I  K  A  N  V  Q  K  Y  G  C  *  *  *  W  S  N  N  T  *  G  A  K  T  R  T  C  Q  T  R  N  *  I  I  *  L  *  N  S  T  I  N  G  S   : C  *  C  *  W  K  W  N  H  R  L  *  R  I  Y  Y  S  N  N  A  H  E  Q  N  G  Q  R  R  T  S  L  H  S  I  P  I  F  *  Q  G  *  *  W  :  V  H  H  N  R  R  V  R  A  S  F  K  R  I  W  Y  *  *  W  K  G  H  T  R  Y  C  C  *  S  *  L  K  *   : *  W  S  N  *  L  *  *  I  C  S  Y  D  E  K  R  K  S  R  N  N  S  K  Y  K  K   </second_frame>
            <third_frame>   H  I  D  F  S  S  D  P  W  P  S  I  S  H  G  A  K  D  I  V  R  K  M  L  T  S  D  P  K  Q  R  L  T  A  I  Q  V  L   : N  H  P  W  I  K  E  D  G  D  A  P  D  T  P  L  D  N  A  V  L  S  R  L  K  Q  F  R  A  M  N  N  F  K  K  V  A  L  R  :  V  I  A  G  C  L  S  E  E  E  I  M  G  L  K  Q  M  F  K  S  M  D  A  D  N  S  G  A  I  T  L  E  E  L  K  Q  G  L  A  K  Q  G  T  K  L  S  D  Y  E  I  Q  Q  L  M  E  A  :  A  D  A  D  G  N  G  T  I  D  Y  E  E  F  I  T  A  T  M  H  M  N  R  M  D  K  E  E  H  L  Y  T  A  F  Q  Y  F  D  K  D  N  S  G :   Y  I  T  I  E  E  L  E  Q  A  L  R  E  F  G  I  D  D  G  K  D  I  Q  D  I  V  A  E  V  D  S  N  N  :  D  G  R  I  N  Y  D  E  F  A  A  M  M  R  K  G  S  P  E  T  T  A  N  I  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43704" stop="43590"/>
                    <exon start="42749" stop="42634"/>
                    <exon start="41825" stop="41658"/>
                    <exon start="40835" stop="40708"/>
                    <exon start="40083" stop="39984"/>
                    <exon start="39842" stop="39765"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HIDFSSDPWPSISHGAKDIVRKMLTSDPKQRLTAIQVLNHPWIKEDGDAPDTPLDNAVLSRLKQFRAMNNFKKVALRVIAGCLSEEEIMGLKQMFKSMDADNSGAITLEELKQGLAKQGTKLSDYEIQQLMEAADADGNGTIDYEEFITATMHMNRMDKEEHLYTAFQYFDKDNSGYITIEELEQALREFGIDDGKDIQDIVAEVDSNNDGRINYDEFAAMMRKGSPETTANIKK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="46107" PGL_stop="44064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46107" e_stop="45339"/>
            <exon e_start="44110" e_stop="44064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="46107" e_stop="45339" e_length="769"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45338" i_stop="44111" i_length="1228"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44110" e_stop="44064" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46107" stop="45339"/>
              <exon start="44110" stop="44064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332911" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTTTCTCTTTTCTCTCTTTGTTTATTTGTTCATCATCATCTTCATAATAATTTTTCTTTTGCCCTTTTAGCTTAGTCCCCATAATACAATGGGGAACTGTTGTTCAAGGGGCCAACCTAATAATGATGATGATCATCATATTATGAGTAAAGAAAAATCCAATGATAATGATCAATCAAAAAGTTGTAATAATAATAATAATACTACACCACCAAAATCTCCTGACCCTTCTTCAAAACCATCTAAAAAATCCCCTATAGGTCCAGTATTAGGAAGACCAATGGAAGATGTTAAAAAGACATATTCAATAGGTAAAGAATTAGGAAGGGGTCAATTTGGTGTAACACATTTATGTACACATAAACAAAATGGTGAACAATTTGCATGCAAAACAATAGCAAAAAGGAAATTGGTTAATAAAGAAGATATTGAAGATGTTAAAAGGGAAGTACAAATAATGCATCATTTAACAGGTCAACAAAATATTGTTGAACTTAAAGGTGCTTATGAGGACAAACATTCAGTACATTTGGTTATGGAATTATGTGCTGGTGGTGAACTTTTTGATAGGATTATTACTAAAGGACATTATACTGAAAGGGCTGCTGCTACTTTGCTTAGAACTATTGTTCAAATTGTACATACTTGTCATTCTATGGGTGTTATTCATAGAGATCTCAAGCCTGAGAATTTTCTTCTTCTTAATAAAGATGAGGATTCACCTCTCAAGGCTACCGATTTCGGTCTTTCCGTCTTTTATAAACAAG : GAGATGTGTTTAAGGACATAGTGGGTAGTGCATATTACATTGCACCT</gDNA_template>
            <first_frame> L  F  L  F  S  L  F  V  Y  L  F  I  I  I  F  I  I  I  F  L  L  P  F  *  L  S  P  H  N  T  M  G  N  C  C  S  R  G  Q  P  N  N  D  D  D  H  H  I  M  S  K  E  K  S  N  D  N  D  Q  S  K  S  C  N  N  N  N  N  T  T  P  P  K  S  P  D  P  S  S  K  P  S  K  K  S  P  I  G  P  V  L  G  R  P  M  E  D  V  K  K  T  Y  S  I  G  K  E  L  G  R  G  Q  F  G  V  T  H  L  C  T  H  K  Q  N  G  E  Q  F  A  C  K  T  I  A  K  R  K  L  V  N  K  E  D  I  E  D  V  K  R  E  V  Q  I  M  H  H  L  T  G  Q  Q  N  I  V  E  L  K  G  A  Y  E  D  K  H  S  V  H  L  V  M  E  L  C  A  G  G  E  L  F  D  R  I  I  T  K  G  H  Y  T  E  R  A  A  A  T  L  L  R  T  I  V  Q  I  V  H  T  C  H  S  M  G  V  I  H  R  D  L  K  P  E  N  F  L  L  L  N  K  D  E  D  S  P  L  K  A  T  D  F  G  L  S  V  F  Y  K  Q   : G  D  V  F  K  D  I  V  G  S  A  Y  Y  I  A  P </first_frame>
            <second_frame>  S  F  S  F  L  S  L  F  I  C  S  S  S  S  S  *  *  F  F  F  C  P  F  S  L  V  P  I  I  Q  W  G  T  V  V  Q  G  A  N  L  I  M  M  M  I  I  I  L  *  V  K  K  N  P  M  I  M  I  N  Q  K  V  V  I  I  I  I  I  L  H  H  Q  N  L  L  T  L  L  Q  N  H  L  K  N  P  L  *  V  Q  Y  *  E  D  Q  W  K  M  L  K  R  H  I  Q  *  V  K  N  *  E  G  V  N  L  V  *  H  I  Y  V  H  I  N  K  M  V  N  N  L  H  A  K  Q  *  Q  K  G  N  W  L  I  K  K  I  L  K  M  L  K  G  K  Y  K  *  C  I  I  *  Q  V  N  K  I  L  L  N  L  K  V  L  M  R  T  N  I  Q  Y  I  W  L  W  N  Y  V  L  V  V  N  F  L  I  G  L  L  L  K  D  I  I  L  K  G  L  L  L  L  C  L  E  L  L  F  K  L  Y  I  L  V  I  L  W  V  L  F  I  E  I  S  S  L  R  I  F  F  F  L  I  K  M  R  I  H  L  S  R  L  P  I  S  V  F  P  S  F  I  N  K  :  E  M  C  L  R  T  *  W  V  V  H  I  T  L  H   </second_frame>
            <third_frame>   L  S  L  F  S  L  C  L  F  V  H  H  H  L  H  N  N  F  S  F  A  L  L  A  *  S  P  *  Y  N  G  E  L  L  F  K  G  P  T  *  *  *  *  *  S  S  Y  Y  E  *  R  K  I  Q  *  *  *  S  I  K  K  L  *  *  *  *  *  Y  Y  T  T  K  I  S  *  P  F  F  K  T  I  *  K  I  P  Y  R  S  S  I  R  K  T  N  G  R  C  *  K  D  I  F  N  R  *  R  I  R  K  G  S  I  W  C  N  T  F  M  Y  T  *  T  K  W  *  T  I  C  M  Q  N  N  S  K  K  E  I  G  *  *  R  R  Y  *  R  C  *  K  G  S  T  N  N  A  S  F  N  R  S  T  K  Y  C  *  T  *  R  C  L  *  G  Q  T  F  S  T  F  G  Y  G  I  M  C  W  W  *  T  F  *  *  D  Y  Y  *  R  T  L  Y  *  K  G  C  C  Y  F  A  *  N  Y  C  S  N  C  T  Y  L  S  F  Y  G  C  Y  S  *  R  S  Q  A  *  E  F  S  S  S  *  *  R  *  G  F  T  S  Q  G  Y  R  F  R  S  F  R  L  L  *  T  R :   R  C  V  *  G  H  S  G  *  C  I  L  H  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46035" stop="45339"/>
                    <exon start="44110" stop="44064"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPHNTMGNCCSRGQPNNDDDHHIMSKEKSNDNDQSKSCNNNNNTTPPKSPDPSSKPSKKSPIGPVLGRPMEDVKKTYSIGKELGRGQFGVTHLCTHKQNGEQFACKTIAKRKLVNKEDIEDVKREVQIMHHLTGQQNIVELKGAYEDKHSVHLVMELCAGGELFDRIITKGHYTERAAATLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDEDSPLKATDFGLSVFYKQGDVFKDIVGSAYYIAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="58273" PGL_stop="58979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58273" e_stop="58979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="58273" e_stop="58979" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58273" stop="58979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324842" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACTTGGTAATTCAGTAATATCTGGAGTAAATTTTGTTGAAGAAAATCCCACAAAATTAAAGAAAAGAAAGAAAGCATCTGGTCCAAAAAGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCTTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTTTGTGCAATGCTTTTAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGTCATGTTTGTTCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATAAAAAATTATTTATGGCAAACTCCGTTGTTGCAAAGGTGGAAGGAACTGGAAAAGTCCTATTAAAGATGACATCAGGCAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAATGAATTTAGTTTCAATTCTAGTTCTTACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGGCTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCT</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  L  V  I  Q  *  Y  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  T  I  F  V  Q  C  F  *  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  V  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  I  K  N  Y  L  W  Q  T  P  L  L  Q  R  W  K  E  L  E  K  S  Y  *  R  *  H  Q  A  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  *  I  *  F  Q  F  *  F  L  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K  A  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  L  L   </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  W  S  K  F  C  *  R  K  S  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  S  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  R  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  S  C  L  F  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  I  Y  G  K  L  R  C  C  K  G  G  R  N  W  K  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  N  E  F  S  F  N  S  S  S  Y  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  F  F  </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  L  G  N  S  V  I  S  G  V  N  F  V  E  E  N  P  T  K  L  K  K  R  K  K  A  S  G  P  K  S  N  P  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  L  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  L  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  S  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  K  K  L  F  M  A  N  S  V  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  S  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  M  N  L  V  S  I  L  V  L  T  K  N  G  F  K  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  D  M  N  K  D  F  A  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58275" stop="58979"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKRSLGNSVISGVNFVEENPTKLKKRKKASGPKSNPPKKKFNGNCFNCGKHGHRANECRGLKKDKKKKDQANLAESKGEMDDLCAMLLECNLVGNPREWWIDSGASCHVCSNKELFSSYTPALTDKKLFMANSVVAKVEGTGKVLLKMTSGKVVTLNRVSYVPELRMNLVSILVLTKNGFKCVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVDMNKDFASS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70400" PGL_stop="69899"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70400" e_stop="69899"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="70400" e_stop="69899" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70400" stop="69899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAATTTGATAGAAAAACATCTTCCAAAGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCTTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTGATCAAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  F  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  L  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  L  L  L  W  L  A  I  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  K  M  I  D  T  M  A  V  W  V  S  S  M  D  S  S  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  *  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  K  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  F  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  F  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  S  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  I  *  *  K  N  I  F  Q  S  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  S  P  M  K  P  A  D  Q  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  Y  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  L  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70371" stop="70141"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQSYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDNPFKSSEISSILSPMKPADQND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="78972" PGL_stop="79518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78972" e_stop="79063"/>
            <exon e_start="79219" e_stop="79518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.956" e_score="0.913"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="78972" e_stop="79063" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.956">
            <gDNA_intron_boundary i_start="79064" i_stop="79218" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="79219" e_stop="79518" e_length="300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78972" stop="79063"/>
              <exon start="79219" stop="79518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325856" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTAATATTTCGGTGAATATTCAAGTGTTTTTCTTCGCTATTTTCCTACTTTGTTCGAGTAAAAGGTGAATCATCTTGTTTTGTTTAACAG : GTTTCATATTTGAGGTTCAAGTTGAAGATTAACTGAAGAAGGATTTGTTTATTTGTTGAATGTACATATATATATATATTTTTATTTTTTCCGCTATTTTATTTATTTGAATGATGTAACAATTGTAACCCTAAAGATCATATAATAAAGTTATTTGGGGGTCGTCTAGGGGAGGGGGATTTATATGCTTACTTGCTCATTATTTTTTTTTTTAGAAATCATGCCTATAGGTTTGTCTTTAACCACCTAGATTTGATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGAC</gDNA_template>
            <first_frame> H  *  Y  F  G  E  Y  S  S  V  F  L  R  Y  F  P  T  L  F  E  *  K  V  N  H  L  V  L  F  N  R :   F  H  I  *  G  S  S  *  R  L  T  E  E  G  F  V  Y  L  L  N  V  H  I  Y  I  Y  F  Y  F  F  R  Y  F  I  Y  L  N  D  V  T  I  V  T  L  K  I  I  *  *  S  Y  L  G  V  V  *  G  R  G  I  Y  M  L  T  C  S  L  F  F  F  L  E  I  M  P  I  G  L  S  L  T  T  *  I  *  Y  L  *  V  L  *  S  N  Q  F  S  I  C  L   </first_frame>
            <second_frame>  I  N  I  S  V  N  I  Q  V  F  F  F  A  I  F  L  L  C  S  S  K  R  *  I  I  L  F  C  L  T   : G  F  I  F  E  V  Q  V  E  D  *  L  K  K  D  L  F  I  C  *  M  Y  I  Y  I  Y  I  F  I  F  S  A  I  L  F  I  *  M  M  *  Q  L  *  P  *  R  S  Y  N  K  V  I  W  G  S  S  R  G  G  G  F  I  C  L  L  A  H  Y  F  F  F  *  K  S  C  L  *  V  C  L  *  P  P  R  F  D  I  C  R  C  Y  N  L  I  N  F  Q  F  A  *  </second_frame>
            <third_frame>   L  I  F  R  *  I  F  K  C  F  S  S  L  F  S  Y  F  V  R  V  K  G  E  S  S  C  F  V  *  Q  :  V  S  Y  L  R  F  K  L  K  I  N  *  R  R  I  C  L  F  V  E  C  T  Y  I  Y  I  F  L  F  F  P  L  F  Y  L  F  E  *  C  N  N  C  N  P  K  D  H  I  I  K  L  F  G  G  R  L  G  E  G  D  L  Y  A  Y  L  L  I  I  F  F  F  R  N  H  A  Y  R  F  V  F  N  H  L  D  L  I  F  V  G  V  I  I  *  S  I  F  N  L  L  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0119D16.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="85968" PGL_stop="88500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85968" e_stop="86089"/>
            <exon e_start="86898" e_stop="87065"/>
            <exon e_start="87981" e_stop="88032"/>
            <exon e_start="88377" e_stop="88500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.881" e_score="0.992"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="0.973" acc_prob="0.228" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="85968" e_stop="86089" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.881">
            <gDNA_intron_boundary i_start="86090" i_stop="86897" i_length="808"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="86898" e_stop="87065" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87066" i_stop="87980" i_length="915"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87981" e_stop="88032" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.228">
            <gDNA_intron_boundary i_start="88033" i_stop="88376" i_length="344"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="88377" e_stop="88500" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85968" stop="86089"/>
              <exon start="86898" stop="87065"/>
              <exon start="87981" stop="88032"/>
              <exon start="88377" stop="88500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTAATAGAGATTTACTCAACAATTTGATTCAATGGAGTTTTTCTTCAGAGTTCAACTTTTGATTCCTTTGATTTCAGTGCTTCTTGCCCTTTTCCCTCTTTCTGAATCCAATAATATCCAG : TTTTGTGATGCCACAAATATTTATGGAGATTCTGGGTGCGATTTTATGTCGTCAGTTTCATCAAAGATACTTATAAAAGGAGGAACTGTAGTGAATGCTCATCATAAGGAGGTCGCTGATGTGTATATAGAGGATGGAACAATTGTGGCAGTGCAGCCTAACATCAAG : GTTAGTGACGATATCAAAGTCATTGATGCAACTGGAAAGTTTGTCATGCCAG : GAGGAATTGATCCTCATACACACCTTGCTATGGAATTTATGGGATCGGAGACAATTGATGACTTCTTCAGTGGACAGGCAGCCGCATTAGCTGGTGGAACAACAATGCATATTGACTTTGTTAT</gDNA_template>
            <first_frame> T  N  R  D  L  L  N  N  L  I  Q  W  S  F  S  S  E  F  N  F  *  F  L  *  F  Q  C  F  L  P  F  S  L  F  L  N  P  I  I  S  S :   F  V  M  P  Q  I  F  M  E  I  L  G  A  I  L  C  R  Q  F  H  Q  R  Y  L  *  K  E  E  L  *  *  M  L  I  I  R  R  S  L  M  C  I  *  R  M  E  Q  L  W  Q  C  S  L  T  S  R :   L  V  T  I  S  K  S  L  M  Q  L  E  S  L  S  C  Q  :  E  E  L  I  L  I  H  T  L  L  W  N  L  W  D  R  R  Q  L  M  T  S  S  V  D  R  Q  P  H  *  L  V  E  Q  Q  C  I  L  T  L  L  </first_frame>
            <second_frame>  L  I  E  I  Y  S  T  I  *  F  N  G  V  F  L  Q  S  S  T  F  D  S  F  D  F  S  A  S  C  P  F  P  S  F  *  I  Q  *  Y  P   : V  L  *  C  H  K  Y  L  W  R  F  W  V  R  F  Y  V  V  S  F  I  K  D  T  Y  K  R  R  N  C  S  E  C  S  S  *  G  G  R  *  C  V  Y  R  G  W  N  N  C  G  S  A  A  *  H  Q   : G  *  *  R  Y  Q  S  H  *  C  N  W  K  V  C  H  A  R :   R  N  *  S  S  Y  T  P  C  Y  G  I  Y  G  I  G  D  N  *  *  L  L  Q  W  T  G  S  R  I  S  W  W  N  N  N  A  Y  *  L  C  Y </second_frame>
            <third_frame>   *  *  R  F  T  Q  Q  F  D  S  M  E  F  F  F  R  V  Q  L  L  I  P  L  I  S  V  L  L  A  L  F  P  L  S  E  S  N  N  I  Q  :  F  C  D  A  T  N  I  Y  G  D  S  G  C  D  F  M  S  S  V  S  S  K  I  L  I  K  G  G  T  V  V  N  A  H  H  K  E  V  A  D  V  Y  I  E  D  G  T  I  V  A  V  Q  P  N  I  K  :  V  S  D  D  I  K  V  I  D  A  T  G  K  F  V  M  P   : G  G  I  D  P  H  T  H  L  A  M  E  F  M  G  S  E  T  I  D  D  F  F  S  G  Q  A  A  A  L  A  G  G  T  T  M  H  I  D  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85976" stop="86089"/>
                    <exon start="86898" stop="87065"/>
                    <exon start="87981" stop="88032"/>
                    <exon start="88377" stop="88498"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFTQQFDSMEFFFRVQLLIPLISVLLALFPLSESNNIQFCDATNIYGDSGCDFMSSVSSKILIKGGTVVNAHHKEVADVYIEDGTIVAVQPNIKVSDDIKVIDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="91294" PGL_stop="95159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91294" e_stop="91393"/>
            <exon e_start="91898" e_stop="91985"/>
            <exon e_start="92076" e_stop="92154"/>
            <exon e_start="92680" e_stop="92767"/>
            <exon e_start="92856" e_stop="92896"/>
            <exon e_start="92981" e_stop="93033"/>
            <exon e_start="93391" e_stop="93547"/>
            <exon e_start="94753" e_stop="95159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.794" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91294" e_stop="91393" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.794" acc_prob="0.968">
            <gDNA_intron_boundary i_start="91394" i_stop="91897" i_length="504"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91898" e_stop="91985" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91986" i_stop="92075" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92076" e_stop="92154" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92155" i_stop="92679" i_length="525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92680" e_stop="92767" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92768" i_stop="92855" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92856" e_stop="92896" e_length="41"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92897" i_stop="92980" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92981" e_stop="93033" e_length="53"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="93034" i_stop="93390" i_length="357"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93391" e_stop="93547" e_length="157"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93548" i_stop="94752" i_length="1205"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="94753" e_stop="95159" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91294" stop="91393"/>
              <exon start="91898" stop="91985"/>
              <exon start="92076" stop="92154"/>
              <exon start="92680" stop="92767"/>
              <exon start="92856" stop="92896"/>
              <exon start="92981" stop="93033"/>
              <exon start="93391" stop="93547"/>
              <exon start="94753" stop="95159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329766" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAGCTATTCGTTTGGCCAGCTTTGTGAACACTCCATTGTATGTTGTTCATGTCATGAGTATTGACGCGATGGAAGAAATTGCCAGAGCTCGGAAGTCAG : GTCAAAGAATTGTTGGGGAGCCAGTCGTTTCAGGTTTACTTCTTAATGATTCAGTACTTTGGGATCCTGACTTCCATTTTGCAGCAAG : GTACGTCATGAGCCCACCAATCAGAGCAGCAGGTCATGGAACAGCTCTTCAAGCAGCTCTTGCTGCAGGGGTTCTGCAG : CTGGTAGGAACTGATCACTGCACCTTCAACTCAACTCAGAAAGCGCTAGGAATTGGTGATTTCCGGAAAATACCAAATGGTGTTAATG : GTATGGAGGAGAGAATGCATTTGGTTTGGAATACAATGGTG : GCTTCTGGTCAGATATCTGTCACTGATTATGTTCGCATAACAAGCACAGAATG : TGCTCGGATTTTCAATATCTATCCAAGGAAGGGAGCAATACTTGTTGGGTCTGATGCAGATATAATCATTTTAAATCCCAATTCAAGCTTCAAGATTAGTTCAAAGTCACACCATTATAGGACAGATACCAATGTCTATGAGGGTTGGACAGGCATG : GGAAAGGTTGAAACTACAATTGCAGGAGGAAGGGTTGTTTGGGAAAATGATGAGCTGAAAGTCATCCCTGGTGCTGGCAAGTACATTGAAATGCCACCTTTCAGTTATCTTTTTGACGGGATAGACAAGGCAGATGCAAAGTACCTCTCTTCCTTAAGAGCACCCGTAGAACGATCAACGACTTGATTTGGCAAATTCACTTTTTCATTATGAGGAAGAGGAATAGAAAGTCTCTCTCTATTTACTTGTAAATACAGAATATCCTTAAGGACATTCAAACTCTTGCAGTTGCTGAAAAACCCTTGGTCACATAATGCTATTTATAAAACTTATGTTTATTCCGTAAAGGATGTTATACATTGGTGTATAGCTGGATTACTGAATGGAGTTTGAGCATTTACCTCATA</gDNA_template>
            <first_frame> R  A  I  R  L  A  S  F  V  N  T  P  L  Y  V  V  H  V  M  S  I  D  A  M  E  E  I  A  R  A  R  K  S   : G  Q  R  I  V  G  E  P  V  V  S  G  L  L  L  N  D  S  V  L  W  D  P  D  F  H  F  A  A  R :   Y  V  M  S  P  P  I  R  A  A  G  H  G  T  A  L  Q  A  A  L  A  A  G  V  L  Q  :  L  V  G  T  D  H  C  T  F  N  S  T  Q  K  A  L  G  I  G  D  F  R  K  I  P  N  G  V  N   : G  M  E  E  R  M  H  L  V  W  N  T  M  V  :  A  S  G  Q  I  S  V  T  D  Y  V  R  I  T  S  T  E  C :   A  R  I  F  N  I  Y  P  R  K  G  A  I  L  V  G  S  D  A  D  I  I  I  L  N  P  N  S  S  F  K  I  S  S  K  S  H  H  Y  R  T  D  T  N  V  Y  E  G  W  T  G  M  :  G  K  V  E  T  T  I  A  G  G  R  V  V  W  E  N  D  E  L  K  V  I  P  G  A  G  K  Y  I  E  M  P  P  F  S  Y  L  F  D  G  I  D  K  A  D  A  K  Y  L  S  S  L  R  A  P  V  E  R  S  T  T  *  F  G  K  F  T  F  S  L  *  G  R  G  I  E  S  L  S  L  F  T  C  K  Y  R  I  S  L  R  T  F  K  L  L  Q  L  L  K  N  P  W  S  H  N  A  I  Y  K  T  Y  V  Y  S  V  K  D  V  I  H  W  C  I  A  G  L  L  N  G  V  *  A  F  T  S   </first_frame>
            <second_frame>  E  L  F  V  W  P  A  L  *  T  L  H  C  M  L  F  M  S  *  V  L  T  R  W  K  K  L  P  E  L  G  S  Q  :  V  K  E  L  L  G  S  Q  S  F  Q  V  Y  F  L  M  I  Q  Y  F  G  I  L  T  S  I  L  Q  Q   : G  T  S  *  A  H  Q  S  E  Q  Q  V  M  E  Q  L  F  K  Q  L  L  L  Q  G  F  C  S :   W  *  E  L  I  T  A  P  S  T  Q  L  R  K  R  *  E  L  V  I  S  G  K  Y  Q  M  V  L  M  :  V  W  R  R  E  C  I  W  F  G  I  Q  W  W :   L  L  V  R  Y  L  S  L  I  M  F  A  *  Q  A  Q  N   : V  L  G  F  S  I  S  I  Q  G  R  E  Q  Y  L  L  G  L  M  Q  I  *  S  F  *  I  P  I  Q  A  S  R  L  V  Q  S  H  T  I  I  G  Q  I  P  M  S  M  R  V  G  Q  A  W :   E  R  L  K  L  Q  L  Q  E  E  G  L  F  G  K  M  M  S  *  K  S  S  L  V  L  A  S  T  L  K  C  H  L  S  V  I  F  L  T  G  *  T  R  Q  M  Q  S  T  S  L  P  *  E  H  P  *  N  D  Q  R  L  D  L  A  N  S  L  F  H  Y  E  E  E  E  *  K  V  S  L  Y  L  L  V  N  T  E  Y  P  *  G  H  S  N  S  C  S  C  *  K  T  L  G  H  I  M  L  F  I  K  L  M  F  I  P  *  R  M  L  Y  I  G  V  *  L  D  Y  *  M  E  F  E  H  L  P  H  </second_frame>
            <third_frame>   S  Y  S  F  G  Q  L  C  E  H  S  I  V  C  C  S  C  H  E  Y  *  R  D  G  R  N  C  Q  S  S  E  V  R :   S  K  N  C  W  G  A  S  R  F  R  F  T  S  *  *  F  S  T  L  G  S  *  L  P  F  C  S  K  :  V  R  H  E  P  T  N  Q  S  S  R  S  W  N  S  S  S  S  S  S  C  C  R  G  S  A   : A  G  R  N  *  S  L  H  L  Q  L  N  S  E  S  A  R  N  W  *  F  P  E  N  T  K  W  C  *  W :   Y  G  G  E  N  A  F  G  L  E  Y  N  G   : G  F  W  S  D  I  C  H  *  L  C  S  H  N  K  H  R  M  :  C  S  D  F  Q  Y  L  S  K  E  G  S  N  T  C  W  V  *  C  R  Y  N  H  F  K  S  Q  F  K  L  Q  D  *  F  K  V  T  P  L  *  D  R  Y  Q  C  L  *  G  L  D  R  H   : G  K  G  *  N  Y  N  C  R  R  K  G  C  L  G  K  *  *  A  E  S  H  P  W  C  W  Q  V  H  *  N  A  T  F  Q  L  S  F  *  R  D  R  Q  G  R  C  K  V  P  L  F  L  K  S  T  R  R  T  I  N  D  L  I  W  Q  I  H  F  F  I  M  R  K  R  N  R  K  S  L  S  I  Y  L  *  I  Q  N  I  L  K  D  I  Q  T  L  A  V  A  E  K  P  L  V  T  *  C  Y  L  *  N  L  C  L  F  R  K  G  C  Y  T  L  V  Y  S  W  I  T  E  W  S  L  S  I  Y  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91294" stop="91393"/>
                    <exon start="91898" stop="91985"/>
                    <exon start="92076" stop="92154"/>
                    <exon start="92680" stop="92767"/>
                    <exon start="92856" stop="92896"/>
                    <exon start="92981" stop="93033"/>
                    <exon start="93391" stop="93547"/>
                    <exon start="94753" stop="94938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAIRLASFVNTPLYVVHVMSIDAMEEIARARKSGQRIVGEPVVSGLLLNDSVLWDPDFHFAARYVMSPPIRAAGHGTALQAALAAGVLQLVGTDHCTFNSTQKALGIGDFRKIPNGVNGMEERMHLVWNTMVASGQISVTDYVRITSTECARIFNIYPRKGAILVGSDADIIILNPNSSFKISSKSHHYRTDTNVYEGWTGMGKVETTIAGGRVVWENDELKVIPGAGKYIEMPPFSYLFDGIDKADAKYLSSLRAPVERSTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="104408" PGL_stop="95196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104408" e_stop="104369"/>
            <exon e_start="103863" e_stop="103678"/>
            <exon e_start="103032" e_stop="102889"/>
            <exon e_start="99627" e_stop="99448"/>
            <exon e_start="97222" e_stop="97040"/>
            <exon e_start="95862" e_stop="95677"/>
            <exon e_start="95439" e_stop="95196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.970" e_score="0.975"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.884" e_score="0.986"/>
          <exon-intron don_prob="0.995" acc_prob="0.974" e_score="0.983"/>
          <exon-intron don_prob="0.998" acc_prob="0.723" e_score="0.973"/>
          <exon-intron don_prob="0.997" acc_prob="0.959" e_score="0.995"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="104408" e_stop="104369" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.970">
            <gDNA_intron_boundary i_start="104368" i_stop="103864" i_length="505"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="103863" e_stop="103678" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="103677" i_stop="103033" i_length="645"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="103032" e_stop="102889" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.884">
            <gDNA_intron_boundary i_start="102888" i_stop="99628" i_length="3261"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="99627" e_stop="99448" e_length="180"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.974">
            <gDNA_intron_boundary i_start="99447" i_stop="97223" i_length="2225"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="97222" e_stop="97040" e_length="183"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.723">
            <gDNA_intron_boundary i_start="97039" i_stop="95863" i_length="1177"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="95862" e_stop="95677" e_length="186"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.959">
            <gDNA_intron_boundary i_start="95676" i_stop="95440" i_length="237"/>
          </intron>
          <exon e_serial="7" e_score="0.955">
            <gDNA_exon_boundary e_start="95439" e_stop="95196" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104408" stop="104369"/>
              <exon start="103863" stop="103678"/>
              <exon start="103032" stop="102889"/>
              <exon start="99627" stop="99448"/>
              <exon start="97222" stop="97040"/>
              <exon start="95862" stop="95677"/>
              <exon start="95439" stop="95196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTCTATCTTCTTTCACAATGGCAAAAGAAAGGGAG : AGAAATGGATCGCCGTCTGTACCTCAGTTTGGAGCATGGCATCACAAGACCGCGGACGATCTTAATTTTTCCATGGTATTCTCCCAAGCTCGTGCAAACAAGAAGCAAAGTAGACAGAATATAGCACACCACAACCCAGGAAATGAGCAAGAAATGCTTGGCAAACACCAAGATGTATCACCAAGG : AAAAGTAGTTCTACTCCAGTGCCTCAAGTTGGACCACGGGATTCAAAAGATCGTGCCAACAAGAAGCCACATAAACCTGATAAAACACACCGAAGCCTAGGCAATGAGCAAGAACTTGGCAAGCACCAACAGGCTTCCACAATG : GTTCGTCCAAAGTCTGTCCCTCAATTTGGAGAGTGGGATCAAAAGAGTGGGGGTAGTCCTGATTACTCGAAAGTGTCCCCTCAAGCTTGTGCCAACAAGAAGCAGCATAAGCATGATTCAGCACACCGCAGCTTGGGAAATGAACAAGAGCTTGGCAAGCACCGTGAGGTTTCACCCAGG : AAAAATAGTCATACGGCAGAGCCTCATTGTGGAGCATGGGATCAGAAGACTGGGAACAGTCCAAATTATCCCATGGGGTTGTCCCACGATCGTGCCAAAAAGAAGCAGCATAGACATGGTTTAGCACGCCACAGCATGGGAACTGAGCAAGAGCTTGGTAAACACAGAGATGTTTCACCTGTG : AAAATTGGTTGGATGTCTGTACCTCAATTTGGAGAGTGGGAGCAAAAGACTCCGAGTGAGACCAATTATTCTATGGTGTTCTCACAAGCGCGCGCAAACAGAAAGAAGCACAAGAGTGATTTAACTCATCGTAGCTATGACTTTGAGCAGGATCTTCTATCCAGGGAGCGAGAGAAAGCTGCCACG : AGGAAAAAGAAGAAGTTCATGACCTACCTTAGTTGTTGTCTTCCTGCATGATGCCGTGGTTTTTAGTGTGAGCGAGGACCCCCTTTGTAGCAATCTTGAACTGACTATTTCTCTCCTGTATTCATACATGAAAACATGAGAGAGTTTTATCATTTTTCATCAGAGTATATATATATATATATATGCATTCAAGCCTCTTGCTTGGAGTAAAAATTAAGAAAATTTAGCAACGTTATAATCAAAA</gDNA_template>
            <first_frame> F  F  S  I  F  F  H  N  G  K  R  K  G   : E  K  W  I  A  V  C  T  S  V  W  S  M  A  S  Q  D  R  G  R  S  *  F  F  H  G  I  L  P  S  S  C  K  Q  E  A  K  *  T  E  Y  S  T  P  Q  P  R  K  *  A  R  N  A  W  Q  T  P  R  C  I  T  K   : E  K  *  F  Y  S  S  A  S  S  W  T  T  G  F  K  R  S  C  Q  Q  E  A  T  *  T  *  *  N  T  P  K  P  R  Q  *  A  R  T  W  Q  A  P  T  G  F  H  N   : G  S  S  K  V  C  P  S  I  W  R  V  G  S  K  E  W  G  *  S  *  L  L  E  S  V  P  S  S  L  C  Q  Q  E  A  A  *  A  *  F  S  T  P  Q  L  G  K  *  T  R  A  W  Q  A  P  *  G  F  T  Q   : E  K  *  S  Y  G  R  A  S  L  W  S  M  G  S  E  D  W  E  Q  S  K  L  S  H  G  V  V  P  R  S  C  Q  K  E  A  A  *  T  W  F  S  T  P  Q  H  G  N  *  A  R  A  W  *  T  Q  R  C  F  T  C   : E  N  W  L  D  V  C  T  S  I  W  R  V  G  A  K  D  S  E  *  D  Q  L  F  Y  G  V  L  T  S  A  R  K  Q  K  E  A  Q  E  *  F  N  S  S  *  L  *  L  *  A  G  S  S  I  Q  G  A  R  E  S  C  H   : E  E  K  E  E  V  H  D  L  P  *  L  L  S  S  C  M  M  P  W  F  L  V  *  A  R  T  P  F  V  A  I  L  N  *  L  F  L  S  C  I  H  T  *  K  H  E  R  V  L  S  F  F  I  R  V  Y  I  Y  I  Y  M  H  S  S  L  L  L  G  V  K  I  K  K  I  *  Q  R  Y  N  Q   </first_frame>
            <second_frame>  F  F  L  S  S  F  T  M  A  K  E  R  E  :  R  N  G  S  P  S  V  P  Q  F  G  A  W  H  H  K  T  A  D  D  L  N  F  S  M  V  F  S  Q  A  R  A  N  K  K  Q  S  R  Q  N  I  A  H  H  N  P  G  N  E  Q  E  M  L  G  K  H  Q  D  V  S  P  R  :  K  S  S  S  T  P  V  P  Q  V  G  P  R  D  S  K  D  R  A  N  K  K  P  H  K  P  D  K  T  H  R  S  L  G  N  E  Q  E  L  G  K  H  Q  Q  A  S  T  M  :  V  R  P  K  S  V  P  Q  F  G  E  W  D  Q  K  S  G  G  S  P  D  Y  S  K  V  S  P  Q  A  C  A  N  K  K  Q  H  K  H  D  S  A  H  R  S  L  G  N  E  Q  E  L  G  K  H  R  E  V  S  P  R  :  K  N  S  H  T  A  E  P  H  C  G  A  W  D  Q  K  T  G  N  S  P  N  Y  P  M  G  L  S  H  D  R  A  K  K  K  Q  H  R  H  G  L  A  R  H  S  M  G  T  E  Q  E  L  G  K  H  R  D  V  S  P  V  :  K  I  G  W  M  S  V  P  Q  F  G  E  W  E  Q  K  T  P  S  E  T  N  Y  S  M  V  F  S  Q  A  R  A  N  R  K  K  H  K  S  D  L  T  H  R  S  Y  D  F  E  Q  D  L  L  S  R  E  R  E  K  A  A  T  :  R  K  K  K  K  F  M  T  Y  L  S  C  C  L  P  A  *  C  R  G  F  *  C  E  R  G  P  P  L  *  Q  S  *  T  D  Y  F  S  P  V  F  I  H  E  N  M  R  E  F  Y  H  F  S  S  E  Y  I  Y  I  Y  I  C  I  Q  A  S  C  L  E  *  K  L  R  K  F  S  N  V  I  I  K  </second_frame>
            <third_frame>   F  F  Y  L  L  S  Q  W  Q  K  K  G  R :   E  M  D  R  R  L  Y  L  S  L  E  H  G  I  T  R  P  R  T  I  L  I  F  P  W  Y  S  P  K  L  V  Q  T  R  S  K  V  D  R  I  *  H  T  T  T  Q  E  M  S  K  K  C  L  A  N  T  K  M  Y  H  Q  G :   K  V  V  L  L  Q  C  L  K  L  D  H  G  I  Q  K  I  V  P  T  R  S  H  I  N  L  I  K  H  T  E  A  *  A  M  S  K  N  L  A  S  T  N  R  L  P  Q  W :   F  V  Q  S  L  S  L  N  L  E  S  G  I  K  R  V  G  V  V  L  I  T  R  K  C  P  L  K  L  V  P  T  R  S  S  I  S  M  I  Q  H  T  A  A  W  E  M  N  K  S  L  A  S  T  V  R  F  H  P  G :   K  I  V  I  R  Q  S  L  I  V  E  H  G  I  R  R  L  G  T  V  Q  I  I  P  W  G  C  P  T  I  V  P  K  R  S  S  I  D  M  V  *  H  A  T  A  W  E  L  S  K  S  L  V  N  T  E  M  F  H  L  * :   K  L  V  G  C  L  Y  L  N  L  E  S  G  S  K  R  L  R  V  R  P  I  I  L  W  C  S  H  K  R  A  Q  T  E  R  S  T  R  V  I  *  L  I  V  A  M  T  L  S  R  I  F  Y  P  G  S  E  R  K  L  P  R :   G  K  R  R  S  S  *  P  T  L  V  V  V  F  L  H  D  A  V  V  F  S  V  S  E  D  P  L  C  S  N  L  E  L  T  I  S  L  L  Y  S  Y  M  K  T  *  E  S  F  I  I  F  H  Q  S  I  Y  I  Y  I  Y  A  F  K  P  L  A  W  S  K  N  *  E  N  L  A  T  L  *  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104407" stop="104369"/>
                    <exon start="103863" stop="103678"/>
                    <exon start="103032" stop="102889"/>
                    <exon start="99627" stop="99448"/>
                    <exon start="97222" stop="97040"/>
                    <exon start="95862" stop="95677"/>
                    <exon start="95439" stop="95389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLSSFTMAKERERNGSPSVPQFGAWHHKTADDLNFSMVFSQARANKKQSRQNIAHHNPGNEQEMLGKHQDVSPRKSSSTPVPQVGPRDSKDRANKKPHKPDKTHRSLGNEQELGKHQQASTMVRPKSVPQFGEWDQKSGGSPDYSKVSPQACANKKQHKHDSAHRSLGNEQELGKHREVSPRKNSHTAEPHCGAWDQKTGNSPNYPMGLSHDRAKKKQHRHGLARHSMGTEQELGKHRDVSPVKIGWMSVPQFGEWEQKTPSETNYSMVFSQARANRKKHKSDLTHRSYDFEQDLLSREREKAATRKKKKFMTYLSCCLPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="107425" PGL_stop="107888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107425" e_stop="107888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="107425" e_stop="107888" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107425" stop="107888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCATACCCACAACATCTCTAGCCCGGTCCATTTTGGGTCCTTCCCGGCCACCCCCGAATCACCACCTCCCGTGCCACCCCCCAATACTCATTCCATGTTAACCCGTGGCAAAGCCGGTATTTTTAAACTCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAAGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGTCCCATAGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  Y  P  Q  H  L  *  P  G  P  F  W  V  L  P  G  H  P  R  I  T  T  S  R  A  T  P  Q  Y  S  F  H  V  N  P  W  Q  S  R  Y  F  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  S  F  D  *  S  E  N  L  G  S  C  T  *  V  P  *  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A   </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  H  T  H  N  I  S  S  P  V  H  F  G  S  F  P  A  T  P  E  S  P  P  P  V  P  P  P  N  T  H  S  M  L  T  R  G  K  A  G  I  F  K  L  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  S  H  R  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  I  P  T  T  S  L  A  R  S  I  L  G  P  S  R  P  P  P  N  H  H  L  P  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  F  L  N  S  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  K  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  I  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0119D16.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107426" stop="107887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPQYTRNHHPHSQPTRTTHTHNISSPVHFGSFPATPESPPPVPPPNTHSMLTRGKAGIFKLKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKSHRRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 49 chains have been computed
$ 
$ memory statistics:
$ 54312 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 4937 bytes was the average size of a spliced alignment
$ 18344 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1667 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 70 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:49:17
-->
