<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 17:59:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284025" ref_strand="+" ref_description="SGN-E284025 [cLER-13-E23]">
      <seq>aaagtaccacacaaagtgacatgctttacattgctactagccaaggaggcagtattgacattggataatgtggccaagagaggaatctctctatgcaatagatgttccttgtggggaatgctaatgagacagtgagacatctcttattacattgcaacttgactgggcaactgtggcagattttccttaatctcagaggcatatcttgatgtatgcctagcaagattgatgagactctattcggttgggagatggctggagttggggctacaaacagagaaagatggcggatgatccctgctagtatttggtggctatatggagggagagaaacgagagatgttacgaaaataggaacaaaaacctgcaggaaattaagcttaagtgtgttttattgatctgcttttggtgtacaaatgtctactccaatgaaactgagtcaatcatagatgttttaggatccatttacatttggttcagttttttggattgaatatacttactttctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="8672" stop="7568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8372" g_stop="7868" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E284025" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8372" e_stop="7868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGCCACACAAAGTGGCATGCTTCACATGGCTACTAGCCAATGAAGCAGTTTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATATCTTCTTGCATTGCAACTTTACTGGGCAGCTGTGGCAGATTTTCCTTTATCTCAGA-GCATATCTTGGTGTATGCCTAGCAAGATTGATGAGACTCTATTCAGTTGGAAGATGGCTGGAGTTGCGGCTACAAACAGAGAAAGGTGGAGAATGATCCCTGCTAGAATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATATTTTGAGAATTGGAACAACACCCTGCAGGAAGTTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATCGATATTTTAGGATCCATTTAGATTTGGTTCAGTTTTTTGGATAGATTATACTTTCT</genome_strand>
        <mrna_strand>AAAGTACCACACAAAGTGACATGCTTTACATTGCTACTAGCCAAGGAGGCAGTATTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTG-GGGAATGCTAATGAGACAGTGAGACATCTCTTATTACATTGCAACTTGACTGGGCAACTGTGGCAGATTTTCCTTAATCTCAGAGGCATATCTTGATGTATGCCTAGCAAGATTGATGAGACTCTATTCGGTTGGGAGATGGCTGGAGTTGGGGCTACAAACAGAGAAAGATGGCGGATGATCCCTGCTAGTATTTGGTGG-CTATATGGAGGGAGAGAAACGAGAGATGTTACGAAAATAGGAACAAAAACCTGCAGGAAATTAAGCTTAAGTGTGTTTTATTGATCTGCTTTTGGTGTACAAATGTCTACTCCAATGAAACTGAGTCAATCATAGATGTTTTAGGATCCATTTACATTTGGTTCAGTTTTTTGGATTGAATATACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723618" ref_strand="+" ref_description="SGN-E723618 [FC21AC06]">
      <seq>aattgctttctctgtacattcggaagcagcagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcaaatttgaagaaaatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19258" stop="21758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19553" g_stop="19628" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="172" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="399" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21458" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="582" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E723618" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19553" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCTCTGTACATTCGGAAGCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTA</genome_strand>
        <mrna_strand>AATTGCTTTCTCTGTACATTCGGAAGCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAAATTTGAAGAAAATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359648" ref_strand="+" ref_description="SGN-E359648 [cLPP-5-L10]">
      <seq>tctttctctgtaaagtcggaagcagcagcagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcaatagctgtatctggtggtggtggtgctgcagcaccagctgccgatgagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgactagaggaatgttttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19278" stop="21617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19557" g_stop="19628" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="165" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="392" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21317" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="434" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E359648" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19557" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCTGTACATTCGGAAGCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTG</genome_strand>
        <mrna_strand>TCTTTCTCTGTAAAGTCGGAAGCAGCAG---CAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAATAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGATGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGACTAGAGGAATGTTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713745" ref_strand="+" ref_description="SGN-E713745 [FB09CB05]">
      <seq>tcggaagcagcagcaatagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19272" stop="21774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19572" g_stop="19628" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="153" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="380" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21474" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="579" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E713745" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19572" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAGCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</genome_strand>
        <mrna_strand>TCGGAAGCAGCAGCAATAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732926" ref_strand="+" ref_description="SGN-E732926 [LB03CA11]">
      <seq>gcagcagcaacagcattcctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19278" stop="21764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19578" g_stop="19628" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="147" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="374" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21463" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="562" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="575"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E732926" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19578" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGT</genome_strand>
        <mrna_strand>GCAGCAGCAACAGCATTCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296178" ref_strand="+" ref_description="SGN-E296178 [cLET-24-P14]">
      <seq>agcagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgcttaactggtttctgtatgaatggactcgttccccagttcccgttgagttgattctgggaatctttttgtcaacttactgatttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgctggaaaacaactgaagattcttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19280" stop="21772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19580" g_stop="19628" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="145" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="372" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21471" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="568" r_length="196" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E296178" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19580" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>AGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGCTTAACTGGTTTCTGTATGAATGGACTCGTTCCCCAGTTCCCGTTGAGTTGATTCTGGGAATCTTTTTGTCAACTTACTGATTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712689" ref_strand="+" ref_description="SGN-E712689 [FB05CB12]">
      <seq>gcagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19281" stop="21737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19581" g_stop="19628" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="144" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="371" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21443" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="539" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E712689" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19581" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGA</genome_strand>
        <mrna_strand>GCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306304" ref_strand="+" ref_description="SGN-E306304 [cLEX-13-A24]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaaaanannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="587"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E306304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713867" ref_strand="+" ref_description="SGN-E713867 [FB09DE08]">
      <seq>cagttacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="583"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E713867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CAGTTACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714820" ref_strand="+" ref_description="SGN-E714820 [FB12CB05]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E714820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714866" ref_strand="+" ref_description="SGN-E714866 [FB12CF09]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E714866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732917" ref_strand="+" ref_description="SGN-E732917 [LB03CA02]">
      <seq>catcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="570" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="580"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E732917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CATCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303555" ref_strand="+" ref_description="SGN-E303555 [cLEX-2-L8]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21471" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="566" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E303555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372405" ref_strand="+" ref_description="SGN-E372405 [TUS-32-E16](-)">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtaatgtggaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21466" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="561" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E372405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345530" ref_strand="+" ref_description="SGN-E345530 [cTOF-18-M12]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21465" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="560" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E345530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309828" ref_strand="+" ref_description="SGN-E309828 [cLEZ-10-C10]">
      <seq>cagcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19282" stop="21600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19628" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21300" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="395" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E309828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATT</genome_strand>
        <mrna_strand>CAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732082" ref_strand="+" ref_description="SGN-E732082 [LB01AH10]">
      <seq>cgcatcagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19284" stop="21772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21471" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="565" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E732082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</genome_strand>
        <mrna_strand>CGCATCAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711928" ref_strand="+" ref_description="SGN-E711928 [FB03BF06]">
      <seq>agtaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21436" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="530" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="562"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E711928" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAAC</genome_strand>
        <mrna_strand>AGTAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297476" ref_strand="+" ref_description="SGN-E297476 [cLET-28-C19]">
      <seq>agcaacagcagccctactccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttccccgtgagtttattctgggaatctttttgtcaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21388" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="482" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E297476" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACTCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCCGTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309245" ref_strand="+" ref_description="SGN-E309245 [cLEY-22-I21]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccaattcccgttgagtttattctgggaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21376" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="470" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E309245" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAATTCCCGTTGAGTTTATTCTGGGAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310595" ref_strand="+" ref_description="SGN-E310595 [cLEZ-19-N12]">
      <seq>agcaacattcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttctattagaggaatgtttaactggtttctgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19291" stop="21628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.93"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="143" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="370" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21328" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="423" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E310595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAG-CAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATG</genome_strand>
        <mrna_strand>AGCAACATTCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCTATTAGAGGAATGTTTAACTGGTTTCTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372406" ref_strand="+" ref_description="SGN-E372406 [TUS-32-E16]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgctgcaccagctgccgaggagaagaaagaggaaaacattgtggaagacaaagaggaatctgatgatgacatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="369" r_length="227" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21285" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="379" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E372406" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCTGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAACATTGTGGAAGACAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292794" ref_strand="+" ref_description="SGN-E292794 [cLET-11-E3]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21178" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="374" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E292794" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAG</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294358" ref_strand="-" ref_description="SGN-E294358 [cLET-14-P2](-)">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="291" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E294358" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294358" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294357" ref_strand="+" ref_description="SGN-E294357 [cLET-14-P2]">
      <seq>agcaacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19283" stop="21395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19583" g_stop="19628" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="142" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21095" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="291" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E294357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19583" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</genome_strand>
        <mrna_strand>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732429" ref_strand="+" ref_description="SGN-E732429 [LB02AF03]">
      <seq>gcaatagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttatttgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19284" stop="21782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19584" g_stop="19628" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="141" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="368" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21479" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="572" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="587"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E732429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19584" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTT</genome_strand>
        <mrna_strand>GCAATAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735225" ref_strand="+" ref_description="SGN-E735225 [LB14DA12]">
      <seq>gctacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19284" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19584" g_stop="19628" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="141" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="368" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="568" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="569" polyA_stop="578"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E735225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19584" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>GCTACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348367" ref_strand="+" ref_description="SGN-E348367 [cTOF-27-K3]">
      <seq>caacagcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19285" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19585" g_stop="19628" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="140" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="367" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21476" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="568" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E348367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19585" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTA</genome_strand>
        <mrna_strand>CAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278594" ref_strand="+" ref_description="SGN-E278594 [cLER-10-H19]">
      <seq>aacattagccctacgccattgacgcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgattatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggatctttttgcaacttactgttttcgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19286" stop="21701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19586" g_stop="19628" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.91"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="139" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="366" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21401" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="490" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E278594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19586" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTA</genome_strand>
        <mrna_strand>AACATTAGCCCTACGCCATTGACGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATTATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGG-ATCTTTTTG-CAACTTACTGTTTTCGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733397" ref_strand="+" ref_description="SGN-E733397 [LB04DC05]">
      <seq>cgctgccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19290" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19589" g_stop="19628" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="136" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="363" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="563" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="577"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E733397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19589" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CGCTGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336384" ref_strand="+" ref_description="SGN-E336384 [cTOE-10-P4]">
      <seq>agcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgctttggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19289" stop="21737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19589" g_stop="19628" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="136" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="363" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21444" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="533" r_length="170" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E336384" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19589" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGC-TTGGTAAACATCTTGAG</genome_strand>
        <mrna_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTTGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336385" ref_strand="+" ref_description="SGN-E336385 [cTOE-10-P6]">
      <seq>agcatccctacgccatttaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagttaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19289" stop="21391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19589" g_stop="19628" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="136" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21091" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="281" r_length="145" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E336385" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19589" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC</genome_strand>
        <mrna_strand>AGCATCCCTACGCCATTTAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTTAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288504" ref_strand="+" ref_description="SGN-E288504 [cLES-8-H15]">
      <seq>gcagccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatgtttttgtcaacttaactgtttcgcttttagtttagttaatgcacctattttttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19290" stop="21729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19590" g_stop="19628" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="135" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="362" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21429" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="516" r_length="154" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E288504" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19590" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTT</genome_strand>
        <mrna_strand>GCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATGTTTTTGTCAACTTAACTGTTTCGCTTTTAGTTTAGTTAATGCACCTATTTTTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319177" ref_strand="+" ref_description="SGN-E319177 [cTOB-16-K24]">
      <seq>agccctacgccattaaagcttacaaatctcacacaaaataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttaatttagttaatgcaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19292" stop="21719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19592" g_stop="19628" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="133" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="360" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21419" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="504" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E319177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19592" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTA</genome_strand>
        <mrna_strand>AGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA..............................................................................................................ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAATTTAGTTAATGCACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713179" ref_strand="+" ref_description="SGN-E713179 [FB06DG06]">
      <seq>cccatatataaagccctacgccattatagcttacaaatctcacaccacataagaaaatgacggttctcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgtaagaagatccttgcttctgttggatctgaagctgatgatgataggattgaactcctcttgtcccatgtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggaattgcaataactgtatctggtggtggtggtgctgcagcaccaactgccgaggagaataaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttatttgcttcttttcttgaagatgtattcgttgtcagttcaactcgtcaaaacctgcaattctcaatttataataccaagttaacttggaatttcaatccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19292" stop="21876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19594" g_stop="19628" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="48" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="145" r_length="97" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="372" r_length="227" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21584" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="681" r_length="309" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E713179" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19594" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTG-AAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTGCTTCTTTTCTTGTTGATGTATTCGTTGTCAGTTCAACTCGTCAAAACCTGCAATTCTCAATTTATAATACCAAGTTAACTTGGAATTTCAATCCAACTGGAAAA</genome_strand>
        <mrna_strand>CCCTACGCCATTATAGCTTACAAATCTCACACCAC..............................................................................................................ATAAGAAAATGACGGTTCTCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGTAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCATGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAATTGCAATAACTGTATCTGGTGGTGGTGGTGCTGCAGCACCAACTGCCGAGGAGAATAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTGCTTCTTTTCTTGAAGATGTATTCGTTGTCAGTTCAACTCGTCAAAACCTGCAATTCTCAATTTATAATACCAAGTTAACTTGGAATTTCAATCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342495" ref_strand="+" ref_description="SGN-E342495 [cTOF-8-L5]">
      <seq>ccctacgccattaaagcttacaaatctcacacaaattttgtgtgtatttgtagataagaaaatgaaggttatcgcttcttacttgttagctgtgttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctgggggcggggggggaggtgcaggagctgtatctggtggggggggggcgtggacacccgctggcgaggggaagaaagagggaaagaagggggaagaaaaaggaggatctggtggagacctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19294" stop="21471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19594" g_stop="19628" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19720" i_length="92">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.246" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19721" g_stop="19834" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="149" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="376" r_length="227" r_score="0.890"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21283" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="384" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E342495" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19594" e_stop="19628"/>
          <exon e_start="19721" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGG</genome_strand>
        <mrna_strand>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA............................................................................................TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGGGGCGGGGGGGGAGGTGCAGGAGCTGTATCTGGTGGGGGGGGGGCGTGGACACCCGCTGGCGAGGGGAAGAAAGAGGGAAAGAAGGGGGAAGAAAAAGGAGGATCTGGTGGA......................................................................................................GACCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348734" ref_strand="+" ref_description="SGN-E348734 [cTOF-29-G3]">
      <seq>cttaccaaatctcacaccaaaataagaaaatgaaaggttatcgcttcttacttgttaagctgtgttgggtggcaaaccacctccccatctgctgcagaatttgaagaagatccttgcttctgttggagctgaagctgatgatgaataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtgggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactggtttcgcttttagtttaattaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactaatattggtggattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19437" stop="21775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19610" g_stop="19628" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="122" r_length="101" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="351" r_length="229" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="551" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E348734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19610" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTA-CAAATCTCACA-CAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATG-AAGGTTATCGCTTCTTACTTGTT-AGCTGTGTTGGGTGGC-AA-CACCTCCCCATCTGCTGCAG-ATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATG-ATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGT-GGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CTTACCAAATCTCACACCAAA..............................................................................................................ATAAGAAAATGAAAGGTTATCGCTTCTTACTTGTTAAGCTGTGTTGGGTGGCAAACCACCTCCCCATCTGCTGCAGAATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGAATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGGTTTCGCTTTTAGTTTAATTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAATATTGGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304814" ref_strand="+" ref_description="SGN-E304814 [cLEX-10-F19]">
      <seq>cacaaaataagaaaatgaagtatcgcttcttacttgtagctggttgggtggcaacacctcccatctgctgcaattgaaaaatccttgctttgtggagctgaagctgatgatgataggattgaactcctcttgtccaagtaagggcaaggacatcactgagctgattgctgctggcagggagaagttgngcttagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19437" stop="21774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19623" g_stop="19628" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19739" g_stop="19834" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="92" r_length="86" r_score="0.896"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="316" r_length="224" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21276" g_stop="21474" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="515" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E304814" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19623" e_stop="19628"/>
          <exon e_start="19739" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGTAAATTACTTGATTTGATTTGATCTCTTATGGTTTATCTAACAATTCATTTCTGTTGTTTTTTTCTTGTGTTTGTGTGTAATTATTATTAGTTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTG-GCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</genome_strand>
        <mrna_strand>CACAAA..............................................................................................................ATAAGAAAATGAA-GT-ATCGCTTCTTACTTG-TAGCTG-GTTGGGTGGCAACACCT-CCCATCTGCTGCA-A-TTGAA-AA-ATCCTTGCTT-TG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGT-CCAAGT-AAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGNGCTT-AGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295802" ref_strand="+" ref_description="SGN-E295802 [cLET-25-J7]">
      <seq>gttgggtggcaacacctccccatctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19479" stop="21362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19779" g_stop="19834" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20947" g_stop="21062" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="172" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E295802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19779" e_stop="19834"/>
          <exon e_start="20947" e_stop="21062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGT</genome_strand>
        <mrna_strand>GTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713208" ref_strand="+" ref_description="SGN-E713208 [FB08AB01]">
      <seq>cccttctgctgcagatttgaagaagatccttgcttctgttggagctgaagctgatgatgataggattgaactcctcttgtcccaagtaaagggcaaggacatcactgagctgattgctgctggcagggagaagttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="19497" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19797" g_stop="19834" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20947" g_stop="21173" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="265" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="465" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="476"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E713208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19797" e_stop="19834"/>
          <exon e_start="20947" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTGGTATTGTTTTTTTTTTTTTAATTTCTTTGTATATACATTTTTTTTTGTATGTTAGTTTCTGTGTGGTGGTTTGAAAATGATTCTTATGAATGTGAGTATGAATATGAAATAACCAGCTGCTTAAGGTTACGTATAATAGATCCTTGTAGTCAAGCCCTTTCTCGGACCCTATGCATAGAACTTAGTTCATCGGGCTGCCTTGTATTCATAAATTGTTTTCGTTGCGTGTAATTTCACAAGTGGGGTTTGTAGGTAGTAGTGGAAGAGGATTTATGATTAGAAAACTCATATTTTGTTGAATATTATGGCCTATATAAGATTGGTTAAGGTTTGCGGTACACACCAACTTCCCTAGACCTGACCTGTGGGATTTTACGTTATGCTGTTGTTTACTGATTTATTGATGTGTATTGATGTATAAGTATCAAATGAATGGTTGTAAGACCAAGATGATTAATTTATCTTTCCTTGTTTATAGTTTCTTCTATTTTTACTGATTTTGAGCATGACATTTCTGAATGTGGTGCTGTTTTCTTTGTGTTAGTTTATTGTAATGGATCCTTGGAACTTTTTGACACATGTGTTTGGTTTATTTTATGGATGTACGGAGAGATGTTTACGTGCCTAATGGAGTAATGCGGGTTATTGTAGTATTAGTTATAGTTTTCCAAACTGCTATAAAAGAAATTTTGATTCCTGGAAAACGAGAGTAATATTTGAGGAAAGTAATATGAAGCACCTATCTATTAGAGTAGGTTTAGTTTGTTTTATACTGAGAGGCCTCGCCTTTCTATATTTGATGTACTGTTAATTTTATGTTTAAGTTCTATGTTAACAACACATCCTATAGAATTCCATGAGTGCAGTCTTGGTAGAGTGGTGTGTGCACAATCTTACCTTGGGAGGGTAGATAGGCCGTTTCTGATGGACTATGTCATATAATTCCTTCCTGAGGTATCCATGCGAGACTGGATTACTCTATTATGCTTACTTTCCTTGCATAGATAGGATAACCCTGTCGTTGATTTGTATTTCATGGATAAAATAAGCATCATAATACTGTTTACTTTCTTTAATTTTGCATTCTCAACTTTTTTTAATGTGTGGTGCAGTTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>CCCTTCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238765" ref_strand="+" ref_description="SGN-E238765 [cLEL-9-N12](-)">
      <seq>ggcacgaggttggcttcagtaccctctggtggcggtggtggagttgcagtagctgtatctggtggtggtggtgctgcagcaccagctgccgaggagaagaaagaggaaaagaaggtggaagagaaagaggaatctgatgatgacatgggcttcagtctcttcgattagaggaatgtttaactggtttctgtatgaatggtcttgttccccagttcccgttgagtttattctgggaatctttttgtcaacttactgttttcgcttttagtttagttaatgcacctatattttgcttggtaaacatcttgagtcaattggaaattactagtattgttggatttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="20735" stop="21776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21034" g_stop="21173" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21276" g_stop="21475" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="341" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="360"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E238765" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21034" e_stop="21173"/>
          <exon e_start="21276" e_stop="21475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGA-GAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAGATTCTCCGTTTAGTTTAGGGGTCCTCGACTTTTTTCTGTTGTGGATGATGTTTCTTGTATATCTACTAACATGGTTGTCTGGTTTTCAATAATGCAGGACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</genome_strand>
        <mrna_strand>GGCACGAGGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT......................................................................................................GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227074" ref_strand="+" ref_description="SGN-E227074 [cLED-1-A15](-)">
      <seq>agtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttcacttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="22490" stop="21380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22190" g_stop="21679" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E227074" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22190" e_stop="21679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAC</genome_strand>
        <mrna_strand>AGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550748" ref_strand="+" ref_description="SGN-E550748 [TUS-50-H14]">
      <seq>ttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="22574" stop="21388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22274" g_stop="21688" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E550748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22274" e_stop="21688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</genome_strand>
        <mrna_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688435" ref_strand="+" ref_description="SGN-E688435 [t3_tus_50_h14]">
      <seq>ttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="22574" stop="21388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22274" g_stop="21688" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E688435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22274" e_stop="21688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</genome_strand>
        <mrna_strand>TTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207004" ref_strand="+" ref_description="SGN-E207004 [cLEC-33-F16]">
      <seq>tccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="22573" stop="21391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22273" g_stop="21691" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E207004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22273" e_stop="21691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCAT</genome_strand>
        <mrna_strand>TCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390123" ref_strand="+" ref_description="SGN-E390123 [TUS-17-K23](-)">
      <seq>actccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtctttagagaaagtgaagaccgacaaaggtgacaagccataccaggatgtaaaaatattgaatgtgactgttccaaagtcttaaatgggttcttgttgtggctatgctccttattggatagtttacatctgctttattctggagaactggaaggagtactacgactttacgttggaaagtattgctatcctcgttggaccctgatctgacatgtatctgtgtaatctatgacttctggtacttttctcaaaacctgctatacaacatagattccttcagttttaagaaacttttcgtgcctccgggaagtagaattccacttgcttcactcaagttgaaaggatattagtgaatgggagttgctggctgatctggtattaggattagctcattgccacaaggagtgtacgatcagcgttttccactcaagattcattagtgagacagaacggcctagcttattatcaatgttcatgttgtggacagtaatttatagagttagagacctagatgttgttttcgcggtttcaactgaactacaacaagtgtagacctttttgacatctttttaagtcctagcttcatatatttgaattgtagctgcagttactgtacaagaccctattatgaattcaaattatcagtaagcttcatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="22965" stop="21387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22665" g_stop="22600" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22599" i_stop="22345" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22344" g_stop="21702" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="709" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="724" polyA_stop="734"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E390123" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22665" e_stop="22600"/>
          <exon e_start="22344" e_stop="21702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCA</genome_strand>
        <mrna_strand>ACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAACTGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320509" ref_strand="+" ref_description="SGN-E320509 [cTOB-22-G21]">
      <seq>gagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctctcaattcttcataacaactgttgccactccatggttggacaataagcacacagtttttggcagagtggtgaaaggaatggatgttgtacagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="25987" stop="22295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25687" g_stop="25520" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25048" g_stop="24916" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24031" g_stop="23808" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="525" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23807" i_stop="22754" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22753" g_stop="22600" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="679" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22599" i_stop="22345" i_length="255">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22344" g_stop="22340" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="684" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E320509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25687" e_stop="25520"/>
          <exon e_start="25048" e_stop="24916"/>
          <exon e_start="24031" e_stop="23808"/>
          <exon e_start="22753" e_stop="22600"/>
          <exon e_start="22344" e_stop="22340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAGGTATTATTAGCTTATAAAGTTTCCCCCTCCTGTCTCTGCTATGGATTGATTACTGAACTAATAGACCACTTGGAGCTTTGTCCTGATCAGCACAATATCTCTAGTTATTTATTTATCCAGAAAGGAAGAAAGTTGGTGAATATGTTGTAGTTCAAATTGAAATGATAATTGCTGCAGTTTGTCTGATGTGATATTTAATGCATGGTTACTTCTTGGGACCTGATTAACCATTCCTTTTCTTTTGGATTTTTACAGTCTTT</genome_strand>
        <mrna_strand>GAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG...............................................................................................................................................................................................................................................................TCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227073" ref_strand="+" ref_description="SGN-E227073 [cLED-1-A15]">
      <seq>gaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttcagacaggagatccattaggagatggcacgggtggccaatctatttggggaagggagtttgaagatgagttccataaaagtctgcgacatgatagacccttcactgtctcgatggctaatgctgggccaaacacaaatggctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="25310" stop="22390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25010" g_stop="24916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24031" g_stop="23808" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="319" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23807" i_stop="22754" i_length="1054">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22753" g_stop="22690" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="383" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E227073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25010" e_stop="24916"/>
          <exon e_start="24031" e_stop="23808"/>
          <exon e_start="22753" e_stop="22690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAGGTATGTTAATGTATTGTTTTGTATATATCCATAAAAGCATAATTGTACAGGCTTAACTTATTTCCTATGCTCCCTCCTTCCTAGATATGTGTCGTGTGAAGGGCCGTTGTTTTACTGATGCTGCTTATTTAGTTTTTTGGAATGTTGAACGTGATGGTAGACTGTGGGAACCGGAAGTCTAGGCTCATAATAAAAGATTGTTCCATTTGAGTGTAAAATGTGTTTTTAGGTTCAATCGACCTTTTTTTTCTTTGAACATCAGCCCATTTTTAAGTGTCTGCAGCAGTAAAAGGGAATAAAAAAACCCAGTCAAATGGTAAGACTAATTAAGTATTCAATCCATGGAGTAAATGGATCCATAGTAATAGTACAGTGTAATTTTTTATCCGTGTACTTAAGGTTGCTGAAGCTTTTGCAGCCCCTAATATGCAATAGAAGATTGCCAGTGCATAGTTTAGAAATAAAAGTTAATGACTAGCCAAAAATGAAATCTCTTTTGCTTGCCTTCCTTTACTCGTCTTAAATATGCTGATGACCATGATTTTGTCAGTGTTTTGAATTTTTAAATTCAGTTGCAAATAATAAATTGCTAATTCTTCCTGGCAACAGCTGTTTAGCTATATCATGAATTTAACTAGATGACCCAGCGATTTCCTCCCTACCAATGAAAAGTATCTTTTGCTTTTCTGTGCTTTTTATATTATCATACAATTCTAATGCTTATGATTATGAAAGTGACTGATTGAATCTAATCAGAAGCTTGTACTCCATTCATGGAGCCACAAGTATACTTCTGGAACACGTCATAATATTTAGCATGTGCTGTAGTCTTCTTCCTTGCTTGACTCTGGAGATTCATTTTGCTTGCTTTGTAGACTCCGAGAAGATTTTTCTAGGGTCTAGAGAATGGATAGCTTAGTCATTGCCTTAAATAACAGCTGACGCAGCCTCATGACATCTAATTTTAACTTGATTTTCTAAATAGCTGATAAACATGTTTTCTAGTTTATGCTCTGGGTTAAGTTCATCTAAACGATTATATTGGTCTGTGCAGTCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCT</genome_strand>
        <mrna_strand>GAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390124" ref_strand="+" ref_description="SGN-E390124 [TUS-17-K23]">
      <seq>taaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgataatttgatatttcatcgggtcatcagaggctttatggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="26500" stop="23587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26200" g_stop="26167" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="211" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25737" g_stop="25520" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="429" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25048" g_stop="24916" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="562" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24031" g_stop="23887" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="707" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E390124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26200" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25520"/>
          <exon e_start="25048" e_stop="24916"/>
          <exon e_start="24031" e_stop="23887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTC</genome_strand>
        <mrna_strand>TAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212157" ref_strand="+" ref_description="SGN-E212157 [cLEC-75-F6]">
      <seq>ttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacattgggaagtccgttactacatcccttccagataatgtgatcatgcataccagtatgggtgacattcatatgaagctataccctgaagagtgtccaaaaacagtggagaactttacaacacactgcaggaatggatactatgantatttgatatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="26515" stop="23612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26215" g_stop="26167" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="226" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25737" g_stop="25520" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="444" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25048" g_stop="24916" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="577" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24031" g_stop="23912" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="697" r_length="120" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E212157" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26215" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25520"/>
          <exon e_start="25048" e_stop="24916"/>
          <exon e_start="24031" e_stop="23912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTGGTAAGTTATGGTTTTACTTGGCATATATCAAATAAATGGAAAATTTCAGATAGGTTCCGTTTTGGATTAGCTTAAAAAAAATAGCTTTTAAGTCAAAATAAAAAGTAGGGAAGGCCTACTTTTGGTTTTTAACTTATTTTAAGTTATTTTTAACCTTGTCAAACACTTCCCAACTTACTTTAAATCATTTTTTGCTTATTTTGAATTATTTTTATATTTGACTAACATTTGCAGAAGTCAAAAACTGACTTAGAAGTAGGTTTGACCAACTTTTAAGCCTATCCAAAACCCCTCTTGAACTGGATATCCTTGTCCATGAGTTTGTAGGAGCCGAACTGTATGTGAGTGACAATGATTGGTATCGACTGACAAAGGTTTTAAGTAAGATTGATTTTTGTGGTCCGTTTAAATCAAGTCACTTAATCCTGAATAAAGGACTTACCTTCTTCTACTTCTGTTTTCTGATTCCTGATCAATCAATGAATGAGATAACAGTATAGCATGCTATAAAACCGCTACCTCGAGAATGGTCTTCATAAGCTGGTACACGATGGGCAAACCTATTATGCGCTCTTGGGCAACCTTTCTTAACTGAAGAATGACACTTTTCTGCATTATTGTGGTATTCATAAAAGATTATAGTTCTTTCTATGTTATTCGGACTCTACAAAAATGTTGCCACCCCCGTGACAGATCCTCCAAAAAGTCATTACTTTTGGAGGATCCAACATGAACCTGGTGGGATTTTTAAGAGTCCGAGCAACGTATGTTCTTCCATTATTACTTCGCGTGGTAGAGGCCCTTCCTTTTTATGTATTTGTACTAATCCTGAGATAGACAGAAATTTGCTGATTCATTTCTTTCTTTCTTTTGCTCTGACCTAGATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCAT</genome_strand>
        <mrna_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGANTATTTGATATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206980" ref_strand="+" ref_description="SGN-E206980 [cLEC-33-K20]">
      <seq>ttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtgaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgctgtgctttcaagaaacatagaatctatttgttcagtcagagagaacctgaggaacctgatgatcctaccaagggaagagatgtcttcaatgaaaagccacctcctgatgaacttttggccgtatctgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="26515" stop="24652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26215" g_stop="26167" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="226" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25737" g_stop="25520" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="444" r_length="218" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25048" g_stop="24952" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="541" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E206980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26215" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25520"/>
          <exon e_start="25048" e_stop="24952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAGGTATCGTATATGCTATATAGTACAGAGAACGAAAAGAAGGCTATCTTGAACTTTGTTGCTTTTCTATCCATTGGTCAATGATGAACTTGGACCTTTTCCACTGCACTGACCTGTTCAGTCTAGACCTTAGTGGCATGGTAAAGGAAACATGGTGACAGCTTTATCTAAACTAGTCAAACTAGGACGTGTGCATGATGAAAAATGAATTGTTTTGAGAGATGCTTAAATATCGATTTTTCTACTAGAATTAAGCTTTAAAGTTGTCTGATAACTATCTTGAGCCGTGAAAAAATTGGAAAGTTCAGTTGGCTGCTGTTTCTTCGACATTGGGTGATTTAAATTGATGTTCCATACTTCTATAAAGTATCAGCCCTTGCCCTCTTGTTATCTCTTCTGTTGAATAAAACCTCATTTTCTTGTTTAAATTTCAAATTTATGCTTATTAACAGCTCAGATTTTATTCTTTAACAGTCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATT</genome_strand>
        <mrna_strand>TTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTGAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303743" ref_strand="+" ref_description="SGN-E303743 [cLEX-4-I19]">
      <seq>tttgatactgtgatatcagcagatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctacacactaacaaggtatctcgtatcctggggaaggtggagagcaatgatagatttttgagaattgctttgtatcaaggtgatagaagtagtaaaaaagtaagaaaaatccctgctgcggcagcaaatgcaaatgaaagcaaggagcccttgatagatcccaatctactttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="27418" stop="25254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27118" g_stop="27039" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26540" g_stop="26465" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="156" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26274" g_stop="26167" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="264" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="441" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25737" g_stop="25554" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="625" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E303743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27118" e_stop="27039"/>
          <exon e_start="26540" e_stop="26465"/>
          <exon e_start="26274" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCT</genome_strand>
        <mrna_strand>TTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210574" ref_strand="+" ref_description="SGN-E210574 [cLEC-35-P12]">
      <seq>aaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaactctcctaggaattaaaattataaatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="26499" stop="25561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26199" g_stop="26167" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26052" g_stop="25876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="210" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25737" g_stop="25724" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="224" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E210574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>224</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26199" e_stop="26167"/>
          <exon e_start="26052" e_stop="25876"/>
          <exon e_start="25737" e_stop="25724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAAGTAAGAAAATGTCCAGTAAACTGTCAAGATGCATTTATATTTTCTGTTTCTTGTACATGTGCCTTACTGGAGTTATTATAAGTTTCATGCTACTTCGATGTTCATTTTCTTATTTTGGGTTAATTTTTCTATTGTCAGATTATAAATCTACA</genome_strand>
        <mrna_strand>AAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA..........................................................................................................................................ATTATAAATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310274" ref_strand="+" ref_description="SGN-E310274 [cTOA-1-E24]">
      <seq>tggagtcctgccacacttaagttcccagagaatctggtgaattttagattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcttctatagaggtaagccctgatggtaaacagttctcggtaacttcaccagatcgcaggattcgtatattttggttcaagacaggtaaactaagacgtgtgtatgatgaatctcttgaggtggcacaagatctccagaggagtgatgttcctttataccgacttgaagctattgactttggacgaagaatggctgtggaaaaagaaattgagaaaacagaatgtgtaccacaacctaatgctgtttttgatgaaagttccaatttcattatatatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="27373" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27073" g_stop="27039" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26540" g_stop="26465" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="111" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26274" g_stop="26167" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="219" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26052" g_stop="25892" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="380" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E310274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27073" e_stop="27039"/>
          <exon e_start="26540" e_stop="26465"/>
          <exon e_start="26274" e_stop="26167"/>
          <exon e_start="26052" e_stop="25892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAGGTAAGAAATTACTCCTTTAAATAATCTATTAACTTATGTATGTACAGATGTGGTTTTTGTCTTCTTCTGTTCCTTTTTATTTTTGGTGATAATCGAAAAATTTCCATCTTTTAGGTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAAC</genome_strand>
        <mrna_strand>TGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG..................................................................................................................GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213609" ref_strand="+" ref_description="SGN-E213609 [cLEC-76-K13]">
      <seq>tgtttcagcatcacattttttcattattgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagataccattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtactgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggtatataaacaaagggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggggcatatatatgatgcaagagctggaacaaatgatcctataatatctaaagaggtacaggtgtgccccatcaaagtcatgaaatacaatcatgtctttgatactgtgatatcagcatatgacaaagggatcattgagtactggagtcctgccacacttaagttcccagagaatctggtgaattttatattgaagagtgatactgatctctttgaaattgtgaaatgcaaaactgctgtttcatctatagaggtaagccctgatggtaaacagntctcggtaacttcaccagatcgcangattcgtatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="28136" stop="25913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27836" g_stop="27796" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66">
            <donor d_prob="0.960" d_score="0.93"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27729" g_stop="27641" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="130" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27538" g_stop="27299" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="370" r_length="240" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27298" i_stop="27161" i_length="138">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.777" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27160" g_stop="27039" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="492" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26540" g_stop="26465" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="568" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26274" g_stop="26213" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="630" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E213609" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27836" e_stop="27796"/>
          <exon e_start="27729" e_stop="27641"/>
          <exon e_start="27538" e_stop="27299"/>
          <exon e_start="27160" e_stop="27039"/>
          <exon e_start="26540" e_stop="26465"/>
          <exon e_start="26274" e_stop="26213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAGGTATTCTCATTGACTTGACTCAATACTAAGGTTGATATGTCGTTTGTGCAGTTCATTGGTCTTCTTTGTTATGTTAATATGAAGTTTCTACCAGCAGTCACACTAATCAAATTGCTAACTTAGTTTCCTTGTAATCAGGTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCTGTATGTGTTCAAGTTCTAAAAGTAATTTTCCTTGTATCTGGTCCCTTAACGGAGGCAATAATCATTGATTTCAGGGAGCTCAAACCCCAATCTAAGTTTTAGAATGATCCATTTGGATATTTGTATTACATCTCTATGTATGGAATCCAAGAATTTGTGTTTCCCTTTTCTCTATTGCCCTTTATTGCTTTGGAATGGTGTTTTTTTGGGGTTGGCGAAGAGTATCAATTTTAAATTCTGAAATATAGCCTTGTCAAAAAAGGCCTTATATGGCATCTATTATTAGACCATATCCGTTGTTATTTTAGTGTGTATTCACTTCAATAGAGTAGTACTAAATCTACCGGTTATGGTTTTTCTTATACGATCTAAGAATATAAGCATACATTATTTAATTTATAGGTCCACTCACTTTCTTTGCTATATTCAAGAGTTTGTCTCTTGCTCCTAATTGTAATAGTCACCGCTCATGCTTTTCTTATTATGTTCTGCCTGCAGGGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAGGTATTACAGGAAAACCTTTGCTGGAAAATATGTGTACTTAAACCCTTTTACTTAACAACAATAACTACTACTCTTTGACTATGTACATTAGTACATGTCAAGTTAGCTATAAGCAGTTTCAATTTCTTATTCTTATCAATTAGTGGACAGCGTCTTCAAAAACCTTTTATCCGTTTCTCTTTGTATCCAGGTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTG</genome_strand>
        <mrna_strand>TGTTTCAGCATCACATTTTTTCATTATTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GATACCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTACTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAAGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGGGCATATATATGATGCAAGAGCTGGAACAAATGATCCTATAATATCTAAAGAG..........................................................................................................................................GTACAGGTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCATATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAATTTTATATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCATCTATAGAG..............................................................................................................................................................................................GTAAGCCCTGATGGTAAACAGNTCTCGGTAACTTCACCAGATCGCANGATTCGTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331412" ref_strand="+" ref_description="SGN-E331412 [cTOD-9-L17]">
      <seq>tcactgagaaagcaaatttctgcagcaaatcggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcctatcataatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcatgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattattgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcggcttcccttcatacctggatgtgttgaatgggtatataaacaaggggatgtcaaggctaaacttgccgttagtgatcgtaactcctcattggagcatatatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="29782" stop="27038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29255" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29254" i_stop="27882" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27881" g_stop="27796" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27729" g_stop="27641" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27538" g_stop="27338" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="604" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E331412" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29255"/>
          <exon e_start="27881" e_stop="27796"/>
          <exon e_start="27729" e_stop="27641"/>
          <exon e_start="27538" e_stop="27338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGAT</genome_strand>
        <mrna_strand>TCACTGAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCCTATCATAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCATGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTATTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGGCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGAGCATATATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283128" ref_strand="+" ref_description="SGN-E283128 [cLER-17-M23]">
      <seq>cggaagtgagattggaaatccggcgacggcgacgggagagatggaggaagcagatcagaatgagaacggaaatccggcggcggcggtggtggaggaaaccgaaacggttattggaccgggtccagctcctcgtgctcgtgctaaacgtcctcttcaatttgagcaagcttatctcgattcacttccgtctgctaacttgtatgaaaaaagttacatgcaccgagacgtggttactcatgttgctgtttcagcagcagattttttcattagtgggagtactgatggtcacctgaaattttggaagaaaaagcctactggtatcgagtttgcaaaacattttagatctcatcttggaccaattgaaggccttgcagttagcattgatggtatgctttgctgtacaatttcaagtgataagtctctgaaaatatatgacgtagtgaattatgacatgatgtccatgattcgtcttcccttcatacctggatgtgttgaatgggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="29752" stop="27110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29452" g_stop="29255" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29254" i_stop="27882" i_length="1373">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27881" g_stop="27796" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="284" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27729" g_stop="27641" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="373" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27538" g_stop="27410" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="502" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E283128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29452" e_stop="29255"/>
          <exon e_start="27881" e_stop="27796"/>
          <exon e_start="27729" e_stop="27641"/>
          <exon e_start="27538" e_stop="27410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTTGTAAGTAGTAATACTATTATGTATGGATATGTTTAACTTCACAGTGTTTGTTGTTTTTAAAATGCTTTTAGGGTTTATTATATTTTATAAGAATAGTGCTAATACTACGGGAATGAAGGATGAGGATAGAGACTGGAAATGAAAGAAAATCATACTAAAGCTATACTATATCTAAGTAAATGAATGAAAAAATAGGGAAAAAGTGGATTCACAAGCAATCCAAGGCATATTATACATTGAACCTCAAATGAAATCACAAAAGATCAAATGTAAAATTGTAGAAGTTCACGAAATCAACAAAGGAATATGATAGCTATACTTTGAATTTTGACATTCGAGATTTGAAACCAAAATCATAATGTCACCAACCTAGTCCGTTACGTGACTTAGTCCTTTACTAGTGTTGATGTGTCACCTAGCTCAAGTATGGTGGATAGCTTTAGTAGAATGGTTGTGGTGTCTGGAAACACTAAGGAAAGCTAGAGAGAAGCTTGGAAAGTGAACGAAATACCCCTTTTATTGATTACCGAAGATGTATGCATTAAATGGTTTACAAGATACTAGACCAAGGGTTTTGATGTGTCGTGTGTCAGTCTATGTGAATGGCTGCTCATGCCTACTAAGGTGCAGTCTTCGGTCTCCTACTATTTATAGGCTCCTAAGGCTTTGGATCCTTCAAAGTTGGTGGAAACCCCACTAAATCTGGTGGGCTTTGGGCTACCTAATGTACCCAAGGGCGAGTCTTTCTAGGTATTTCTAGAATCTTCCTCAAATTGCTAGCTTTCTTCGGCTGTCCTTTGGTATCCTTTGCTTGTTCTTTGTCGATCCCTTTTGATATTTTGAGGTTCTTGAGTCTTCTAGGATCCATGGGAACTTTTGCCATCTTTGGGAACATTCTTAAAACTTCCGTCCATTAATGTAGTTTGCTTAGTGGTCTTGGCATGTTTTTAACTTCACTTTATCATGCTCTATTGTGCTTCTTCCAATTTATTAGGCACATTTCAATGTTGAGACATCTCCTAATATGTTCCATGTCACACTTGCACATATCTGCCTGGCCCGATTTTCAATTGTAACCACAGGTCACACGACCATTGTTCAATATGGATTGTGTATGCTCCAGCCCTCTTTTTGTTGTCTTGCTCTGTTTAGGCAACTCGTGGCATGCATGGACAATCAATGCTTTTGGCTGGGTGTGACGATAAACCCAATGTTAATTAAAAAGAGATGAATTATAATTACTGTTAGAAAATAAGGATGAATTATCATAATGACTCAACTTTTTCTTTGAATTGGATAATGGCGCCTCAACTTTGAAAGGTTGGACATGGTCATGTCGGAAATTTTACTAAACCATGTATTATTCGATGCAGGTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATGGTAAGAGAGGACATATTAATTCTTGATGTTTGCTTAAATCACCAAATTCTCTTCTTTATTGTCCAGGTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCAGTAAGTAGCCAAAGGCTCACTGGAAGCAGTATTCCCTATTCCAGTTTATTATCAGTATGCTTGAACAGAACAATCCGCAACTTAACCTAAATTTCTTTGCAGGTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTA</genome_strand>
        <mrna_strand>CGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG..................................................................GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA......................................................................................................GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539342" ref_strand="+" ref_description="SGN-E539342 [TUS-59-A20]">
      <seq>tcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatatttttcacataaataattatcatggtanttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37448" stop="36167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37148" g_stop="36469" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E539342" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37148" e_stop="36469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</genome_strand>
        <mrna_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTTCACATAAATAATTATCATGGTANTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539339" ref_strand="+" ref_description="SGN-E539339 [TUS-59-A20](-)">
      <seq>tcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatattttccacataaataattatcatggtatttattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37448" stop="36167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37148" g_stop="36469" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="681" polyA_stop="690"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E539339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37148" e_stop="36469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</genome_strand>
        <mrna_strand>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539346" ref_strand="+" ref_description="SGN-E539346 [TUS-59-A24](-)">
      <seq>tccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatattttccacataaataattatcatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37383" stop="36174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37083" g_stop="36474" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E539346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37083" e_stop="36474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATT</genome_strand>
        <mrna_strand>TCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353286" ref_strand="+" ref_description="SGN-E353286 [cTOS-14-P8]">
      <seq>ttttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgtttttgctaatcttgttcttttccttgtggaaaagcatgatgtttccatgtgatttgtttaattattaggatcttgtaaggttgtagggtagtagctagtcatgggtgggtgccttgtgaatttcataaattacataaaaatattttccacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37095" stop="36192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36795" g_stop="36492" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E353286" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36795" e_stop="36492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATA</genome_strand>
        <mrna_strand>TTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281779" ref_strand="+" ref_description="SGN-E281779 [cLER-14-D19]">
      <seq>cagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattataggtggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaaggtcaagaatatgggtcagcatcatgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37447" stop="36341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37147" g_stop="36641" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E281779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37147" e_stop="36641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTT</genome_strand>
        <mrna_strand>CAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539349" ref_strand="+" ref_description="SGN-E539349 [TUS-59-A24]">
      <seq>gatcccccgggctgcaggtcagtaaagaatttctctctgatggaagttgccctgatacctcagttgaatactactagcctatatccctcagactcttcagaaatattgttgcactcgtatcagatcctactactaactagtgtgaataaagactcaaaaaaagtcaaaaattttggaccagaaaagaatggaagaagaagaaagaagtgatttgtggtggacttttgttggatcttaatgaatattgacccaccaatatgaatatgaggctatatgaatacaacaaagacattagtttttgttgttgtttgctagccaatgctctattgtacattgctattattatagggggacaaagaaaggaaggttcattttctaaatcttttataagtcaatgcctttgtctaaaacattggatcctgacaaaatacatgtagacaattgttacacaagcaaagggcctggttgtgtgaaggatttggttgggtggtggaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="37448" stop="36370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37144" g_stop="36670" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="497" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E539349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37144" e_stop="36670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGG</genome_strand>
        <mrna_strand>TAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGGGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701023" ref_strand="+" ref_description="SGN-E701023 [FA14DC09]">
      <seq>caaaagaaaaaaactcgagccaaaaatggagccatggctcgacgacttagtcgacgatcttcaaagcatcagcttcaactctactaccactaccgcaactgatattaaccggtcgactagctccggctccgaagccacatggacggctacggcttcttctatctcatccagctctcttcaccaccatatcactaagccacgcgccgctactccttccggtgatccttactgggacgccattacacggggtatttcaacttctacttcgtcggcaatttctctaactgatctccgatttctccatcgattaggatccggcgatataggttccgtttttctcgcggaaatcaaagctgctccggtaacggagatttcgaaatcgacggcggtatcggcgtactttgcagcgaaagttatggataagaaggaacttgcgagccgtaataaggaaggaagagcgaggactgaacgggaaatacttgaaatgttagatcatcctttccttcccacgctttatgcttctattgattcaccgaaatggtcgtgtttattaacggagttttgccccggcggtgatttacacgtactccggcaacgtcaaccggcgaaacgcttccctgaatccgctgtcaggttctatgtgtcggaggtggtggtggcgttggagtacattcacatgatgggaatagtttaccgcgacttgaaacctgaaaatgttttggtccgatcagatggtcatatcatgctcacggactttgatctctcgttaaaatgtgacacctctacatcaacaccagctcaagtgatttcaagccaaaatacacctaatggtggacctcaacaaaatgagtacaaaattgaaccaccaaagttcacagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="42676" stop="37345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42376" g_stop="41743" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41742" i_stop="37892" i_length="3851">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37891" g_stop="37645" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="880" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E701023" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42376" e_stop="41743"/>
          <exon e_start="37891" e_stop="37645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAGGTACACTATTCTCTACTCTCATAGTACATATGAACTATACACATCAACTTCAATCAATACTAATTTTGTTATTCGTGTTATCAAATTAGCTACAAAGTTCATAACTAATTTACTTTTTTTGATATTGATGTTGATAGTGACAAAACTAAACATTTTCACTAACCAATTCAAAAAAATACTACTCTCTCTTTCCATTTTATGTCATACTTTTTTCTTTAATCGAGTATTTGCGTATGAAATTTTTAAATTTTTTAAAATAAGCACAATAATTGATTAATCAAAATGTATAAAAAGACTTAAGTCTACGAATAAATTTATTTGAATCTCAAAAATGCAAAAAAGCAATACATGAAAAATGAAACAAAAGAAATAGTTATGTATAAGTTTTGATTAAATTCGAATGAATTTTTCGATCCTACCTTTATCGTTTTGCTCCTGTGGGGTCCACCAGGTGGTGTTGGAGCTGATAATTTGTCAGTATTATGGTTCCATCTAAGTTGGTCAGTGTCATTTTCTTCTTCTTTTCACTTTGGCCACACTGGATCTATGGTGGACTTGTGCACACTGGATCATTGATTAAAATGGTAATTAATTAGGAAAGATAATTAGAAAATTATGATTAGTCTAATTTATTATTATAAGTTGTGATCCACACGTGCTTAGTATTATGACTTCTATACTTAAAAGTCAAAGTTTAACTTACGCGCCATATGAAATTAAGTTGTTCGAATCTTTAAAAATGTTATTATTTTTATGATAAATTATAAAAAAAAAAATGTGAATTTGAATTAATCAATTTTAAAAGCATAATGATTTTTTAGGAAAAAAGAACTTGTGTGTTATAATTGTTTTGGGATTTATTTATTATGGTTTAGTTGGAGTGATAGAGCTTTTAATGATCATGATAGGAGTGGGCTATATTACTATTTACTAATCAATCAATACATATTTCATTAATTTTTTTAATAGTTGACTTGATGAGGTGCATGTGAAAAAGGAAGGAGCTAATCACCTCTCTAGTCCTTTTTTTAAAAGAATATATTTCATACTAAAATTTTATAATATCAAAGTGAGTTATAAATATGCGATGAGATAAATAAGAATATTTATAAATAAAATATCTCGCCTTTTATATGGATACCATATAGTATTCTCATTATTTTATTTTAATATAAATAGTGAAATAAAATGATTTTGAAATTAACCAACACTTCAAATCAAATTTTTAAATTTGAAAAATATTAATTGATGATATATTTCACTACAAGTATATTTGATTTGGAGTATTTTTTTTTCTGTTTTAAACTCTACCTTCACTCTGTTACTAATATGTTTTTAGAGACTTTCACGAAATAGAGATAAAATCTTTATATACTTTACTTTCTTATCATTTATCAATTAAATTTGTGATTATTATTTGTTATCACACTCGAAAAGAATGAACATGGAGTCACTAAAGTTTTGAGTTGTGTAGATTTTAGGTTTTTTGATTGATGTTTATGTGTTTATATTGAGATTTAATTAAATTTTAGATTATAATAGTAATAATTATATTTTTCTAAAAAAAAAGGTTTTTAACAAAAATAATTATTTTCAATTAAAGATCACTCTAGACTAATCTTCGTTGATATTATGTGGAATCGAATTCGAAAAGATTTTTACCTTCTTTCTTAAGAAAGATAGTCTTGGAAGATTCTATATAAATTTATTAATGAAATCAAGATAGTTAATTCTTCAAATATTTAAATTCTATTTTTGGTAATTGAGTCCAAAGTTAATTTGTCAAACAAACTTTTTAAAATGTAATACTTTTCCAGTTATCATTCCCAAAATTAAGGGGAATAGTCTTGCCTTGTAACTTTTCCTTAATATAAGGAATTTGGAATTTTAATTTTGAAAACTATTTTTTTCTTATTAATATATATTCTTTACCAAAGTGGTCCCTTATTATATTGCAATAAATTGATCTATATGGGAGGCCCCTGTATATATATATAAACTATTCCTATAATTGACAAATATGCCATGTTGGTACACAAGTTATACAGATAATCACAACCTATCTAGACCAAAAATAATAATATGGCTAGAAGGAAACTAGTAGAAATGATTCAAATTTAATTTCTCTAGCTTTTACTTTAGAAGTAGTTTTTGATTGAGCAGAAAATCCTGTTCTCAAGATTATTACTTTTTTTGACTTGACATTTCACTGCCTACATTTGGATTTTTATGATTTGGATGGACCTCTCTTTTGATTATACGATCCCTTGTGACACATGAAACAAAAAAAAAGAAAAATCAGATAATTTTTTATATTTTTATAAATCATTATGTTTAGACAGTTTATACGTATTTTAATTAATTATATAGAATATTTGTTACCTTATATCGATTAGATAGTTAGTAAGTAGTCGAGTAATTTCTCCCTTGTCAGTGGTAGAGCATGGTCATAGTCTGGAGTAACATCATCACTACAGTTCTTCCTTTTCTTTTTTTTTTGGTTATCAATATGATTTCTACTCTTTTTCTTAAACACAATTTTTCTTAAAGTTGAGGGCTTCTGAGAAATAATCTTTCTACCTCCACAAAGGTTAGGATAAGGGCAACGTACTTCCCATCCTCCCAAGACCCACTTATGAGATCATAGTATATTATACCAAATAACTTTGTCGGTCAAACTTGTACTAACCAAAAGATCAACAATTCACACCTAAAATAGTAGACGTAAAATAATGTCTCATAATAATTTAATTCTTTGTCAAAATGCAATACTACCTACTGAACTAATCAGAATTATTGGGGGTACATAGTCTTTCCCTTCTTGTTTCCCATGTTCATTGTTTTGCCTACAAAGTACAAGGATATATTTTGCATATAAAGATATGCCCTGTTTGTGTAGGCCATACTTTTCAACTAATATGTGGGTGAGTTTATTCTAATATACTTGCATTATCTTTTCAATTTGCTCATTGTCTACCTAGATAGTCGATATCCTATCCTAGTGGGAGATAACATATACCTCGTGGAATTAGTTGATGTTTGTGCTCATGTTAATTCGGACAGCTGTTATTATACTTGATTCATTTACTTTGTTCGTCTTCCTATTTTGTTATCGTTATTTTCCTTGTGTCTATCAAAAACAACCCTCCCTATCCCATAAAGGTAAGGTTAAGGTATGCGAAGAAAACCTTTCTCAGAGATAGCACTTGTGAAAATCCTTGGTATTTTCTTCTTTTATGGATATCCCACAAACTTTTTTTTTTCTCATTTTAATTAATCTAGTACAAAATGTAATGATGTTGCACTTGTGGAAAGCAACCAAACGAAGAGCACAAAAAGGAGAAGAGGACAGTAAAGTTGCGCCATGATATAGGGACAATGTTTCAAGGACCTACTTTTTTAATCTTGCTACGTTGCATGGGGAAACAATTAGGGGGGCCAGCATATATTCCACAAACTAAAGTATAGAGTAGTTTTGCTATCTTTAAAGAAGCATATTGGTCCCCCTCCCCATATGATAAGAGTTGAAACAAACTTCTTTGTGCAGCCGTGAGGTCTTGGATCCTCCTTGGTTTCGAACCTTAGCATGAAAAAAATCTTGCTCGGGAGCACTTTCCTATTTAATCATTCTCGTGTGTCTCAGAATCAATACAAATATCGAATACTAGATAAAAAAGTGGGCGTTAAAAAGTTTTGAGTCATAAAGTTCTTGCTTCATTTACTATGGTTCTTTTCTTTGTTCCCTCAGATGCTTCCATTAGTCTTATCTTCTTGTGTTTAACTTTTTACATTTCGAATCTCCTTAGTGAAAATCCTCATGTTACCACTTGCTAATCTCATGGTATCTACAGGTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</genome_strand>
        <mrna_strand>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTC-AACCGGCGAAACGCTTCCCTGAATCCGCTGTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744913" ref_strand="+" ref_description="SGN-E744913 [GI|2735247]">
      <seq>gactttaagccagagaacgtactagtgagagaagacggtcatatcatgctgtctgattttgatttatctcttaggtgtgctgttaatcctaccttggtgaaatcgtcttctcccatcattgagcttccaaaaaagtctagtccgtgctcagctagctgcatagatcccttctgcctacatccgtcgtggcaagtatcttgctttggccccaggtttctatctacagaagcaaagacacgtaaaataaaggctgacctagctgcacaagtctcacctttaacacagcttgttgtggagccaaccaacgctcgatccaactcatttgtaggaacccacgaatacttagctccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="52522" stop="53475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52822" g_stop="53175" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E744913" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52822" e_stop="53175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTAAAACCTGAGAATGTGTTGGTCCGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAGTATCTAGCTCCGGAG</genome_strand>
        <mrna_strand>GACTTTAAGCCAGAGAACGTACTAGTGAGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAATACTTAGCTCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729290" ref_strand="+" ref_description="SGN-E729290 [LA20CD07]">
      <seq>ctttattgttgcattaccagaaccaaccaccattgaagttttgagtgatgaggtccttactctttagtacagtgacaattctagccccttcaaaattaccaaactgccatcattctcactatgctgctcctcactctctcaaattcccatttctcacttctcttcttcctactaaatccccatttcttcttaaagaaagctataaaagtgtaaaaatcaaagctttaatggaatcaggaatggactcaagtacaaaacctttttctgttctctttgtgtgtcttggaaacatatgcagaagtccagctgctgaaggtgtttttacagatttggttaagaaaagggggcttgattcaaagtttaagattgattctgctggtactattaattatcatgagggaaatgaagctgatccaagaatgagggctgctgctaaaaggcgtggaattgcgataacgtctatatctaggccaattagggcttctgatttcaaagattttgatctcattcttgctatggatgagcaaaacaaatctgatattcttggggctctggagaggtggatccatagagagccattgccagctgatgcagcgganaaggtccgcttgatgtgttcctactgtaagaagcatcangaaactgaagttccagacccttactatggtggagctcaaggttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="54449" stop="56754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54749" g_stop="55146" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55147" i_stop="55749" i_length="603">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55750" g_stop="55885" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="534" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55886" i_stop="56218" i_length="333">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56219" g_stop="56286" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="602" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56287" i_stop="56372" i_length="86">
            <donor d_prob="0.881" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56373" g_stop="56454" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="684" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E729290" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54749" e_stop="55146"/>
          <exon e_start="55750" e_stop="55885"/>
          <exon e_start="56219" e_stop="56286"/>
          <exon e_start="56373" e_stop="56454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAGGTATTTTCAATTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGTCTGTAAAATTTGTAACTTTTTGATTGATTCTGCTGGTAGCATTGATTATCATGAGGTATTTCCATTTGGGTGTCTGTAAAATTTGTATTCAAGATTGGTGCTGTTGGTAGTATTGATTATCATGAGGTATTCTCACTTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGGCCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTCCACTAGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAATATTGATTATCATGAGGTATTTTCATTTGAGTTCTGTAAAATTTGTTAGTTATGATTGATTCTGCTGGTATTTTTAATTATCATGATGTATTTTCAATGATAATTAAATGTAATTTTTTATGGTTTTGAATATTTCTTGGAGTTGATCATGTTATAATGTTGCTTTTGTTTTTGTTTGTCTTAAAGGGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAATGTGGGTTATTGCAAAATCCCGTGTCATATTCTGGGTTATGTTTTTTTAGCTTTTCTTTTTATTAGGCCCATTTCATTTTTTATAACCGTGGTGTCGTGTCAGTTTGTGCATACCCGGACTAATTCCATAGGTACCTGTTACCTTCCACCAACACATATATCTGGTAACTCTGCTCACCAAGTTTTGCTTCTACTGAAATTTGAACTAGAGACCTCATGGTTAAGGGTCTATCTTGATTTTCCTACTTTATGTTCAGCTCCACATCTTCTTGGTATAATCTTGATGGTTTGAACATATGTACCGTATCAAGAACTGATTTGTTTTATAACACAGCTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAGGTTTTTGAATTGATAAGTCTTATACTGGTACTGGTTATCAACTGCATTTCTTAAGTCTGTTATCCTAAAAGTGCTTTTAAATTCAGGTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTG</genome_strand>
        <mrna_strand>CTTTATTGTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT.............................................................................................................................................................................................................................................................................................................................................CTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGANAAG......................................................................................GTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCANGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706163" ref_strand="+" ref_description="SGN-E706163 [FA29AG08]">
      <seq>gttgcattaccagaaccaaccaccattgaagttttgagtgatgaggtccttactctttagtacagtgacaattctagccccttcaaaattaccaaactgccatcattctcactatgctgctcctcactctctcaaattcccatttctcacttctcttcttcctactaaatccccatttcttcttaaagaaagctataaaagtgtaaaaatcaaagctttaatggaatcaggaatggactcaagtacaaaacctttttctgttctctttgtgtgtcttggaaacatatgcagaagtccagctgctgaaggtgtttttacagatttggttaagaaaagggggcttgattcaaagtttaagattgattctgctggtactattaattatcatgagggaaatgaagctgatccaagaatgagggctgctgctaaaaggcgtggaattgcgataacgtctatatctaggccaattagggcttctgatttcaaagattttgatctcattcttgctatggatgagcaaaacaaatctgatattcttggggctctggagaggtggatccatagagagccattgccagctgatgcagcggaaaaggtccgcttgatgtgttcctactgtaagaagcatcaggaaactgaagttccagacccttactatggtggagctcaaggttttgagaaggtactagatatgcttgaagatgcttgtgattcactgttggaaagcattgtgacagaacaaaatttangttcatagatgtactttaatcaccagtattcttactgccaataaggcaattggttattccaagcatataccatgtactctactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="54456" stop="58335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54756" g_stop="55146" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55147" i_stop="55749" i_length="603">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55750" g_stop="55885" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="527" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55886" i_stop="56218" i_length="333">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56219" g_stop="56286" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="595" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56287" i_stop="56372" i_length="86">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56373" g_stop="56459" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="682" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56460" i_stop="57882" i_length="1423">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57883" g_stop="58035" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="835" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E706163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54756" e_stop="55146"/>
          <exon e_start="55750" e_stop="55885"/>
          <exon e_start="56219" e_stop="56286"/>
          <exon e_start="56373" e_stop="56459"/>
          <exon e_start="57883" e_stop="58035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAGGTATTTTCAATTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGTCTGTAAAATTTGTAACTTTTTGATTGATTCTGCTGGTAGCATTGATTATCATGAGGTATTTCCATTTGGGTGTCTGTAAAATTTGTATTCAAGATTGGTGCTGTTGGTAGTATTGATTATCATGAGGTATTCTCACTTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGGCCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTCCACTAGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAATATTGATTATCATGAGGTATTTTCATTTGAGTTCTGTAAAATTTGTTAGTTATGATTGATTCTGCTGGTATTTTTAATTATCATGATGTATTTTCAATGATAATTAAATGTAATTTTTTATGGTTTTGAATATTTCTTGGAGTTGATCATGTTATAATGTTGCTTTTGTTTTTGTTTGTCTTAAAGGGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAATGTGGGTTATTGCAAAATCCCGTGTCATATTCTGGGTTATGTTTTTTTAGCTTTTCTTTTTATTAGGCCCATTTCATTTTTTATAACCGTGGTGTCGTGTCAGTTTGTGCATACCCGGACTAATTCCATAGGTACCTGTTACCTTCCACCAACACATATATCTGGTAACTCTGCTCACCAAGTTTTGCTTCTACTGAAATTTGAACTAGAGACCTCATGGTTAAGGGTCTATCTTGATTTTCCTACTTTATGTTCAGCTCCACATCTTCTTGGTATAATCTTGATGGTTTGAACATATGTACCGTATCAAGAACTGATTTGTTTTATAACACAGCTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAGGTTTTTGAATTGATAAGTCTTATACTGGTACTGGTTATCAACTGCATTTCTTAAGTCTGTTATCCTAAAAGTGCTTTTAAATTCAGGTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTGAGAAGGTAATGTCTGATAATCTCATAATCCATCTATCTTGTTACGCCATGATGAATAACCCAAAAGCTGCCTGATTTTCACATTTTAGATAGCGGAAGGCTTCTTGCTCCTAGCTATACTGGAGAATCTCAATTCTCACAGTGCTTACTTTGTTAATTTTAATGTTGGAGCATTATGATAGTCATACCACAATATGTTATGTTCTGTTGGCTTGAATTAAGTAGTTAATTCTCAATACTATGCCATATAATGCCTCGAGCTGTCAAATAATACAGAAGTATAATGGTTTAAAGACCCATTGCTCTTGATACACAATTGCTAACCACATTTTCATGGAAAGAATGGATGATGAATTGGAGAGATCATTGAATTTGTCCTCAACACTTCAGAATAATGAAGAAAAAAGTCTAGTTTATGTGTTCTTTGAAATTATGAGTGAATGACTTATTCTGCTTAGTTTATATGTCATCTATAATACAGCCTGCTGTCCTTTGCTTATACTAGAAGACTGATCTTGAAATACTAGTGCCATTTGAAAAGTGCACACAATAGTCACCTTACTCATGCTTACATGCAGTAAAGCCCTACTCAATAGAAAATTATCCAGCTTCTCACCTCATATTTCCTTCCCTCTGGCTGCACGGAGAGAAAAAGGAATGGTGTCTTGAGCTATAGCCCTGATAGCTAATTCTCCCTTCACTTCTTACCTTCTCGTTTAACCATTCTTCTAACTCCCTAAGACCCTAACAGCCTAACCCTTTCCAGTCCCTCAATCTCCCTGAAGTCATTAATTAACTCTGTTATCCTGACCTCAACCCTCCCCAAGTCCTACATATGAATCCTGATGCTTGTCTTTCATCAGCCATAGTTATAGTCTTATCGGTATCTTCAAGAAAGTACATAGGACAAAAATAGTCCTAAAATTTAGGCTATCGACAAGGATCGTTTGGAATATTTGGTTTGGAAAAATCCAAGGAGGTATTTTGGAGAACTTTTACCAAGTCCTTGTATGTTGTAAGAGGACTTCATATCTAGAAGAAAATTTTATAATTTGATGTTTCATTAAGTGCATGGAAATTTGGATACCTTTGTAGTTTCCCAAGGTCTTCTCAATAAGCCAAGCACATATTATCTTTTAATTCCTGTTGAATGATTTTCACAGAAAATGCTAGAAAAGCCCCATCTTAAAAAAGCAAAAGCTCTTTACAATGAGAAGAGTTTCTGCAAGAGGTCATTTCTGAAGGTCTTAAAAGACCTTATTAATTTACTAAGATGGTGTGTTGCTGCTACAATATATATATATTATGTGTAAACACTGTTCATTTGGATGAGTCAGTTCGCTTTTGTTTGCTGTTAAACTTGCAGTTGATGCTTACTGCCAGTGCCAGCAACATGCATCTAATTCTCAACTCTACATCTTGCTCACAGGTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCT</genome_strand>
        <mrna_strand>GTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT.............................................................................................................................................................................................................................................................................................................................................CTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAG......................................................................................GTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTANGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCCAAGCATATACCATGTACTCTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709782" ref_strand="+" ref_description="SGN-E709782 [FA53AE04]">
      <seq>cgcaccattgaagttttgagtgatgaggtccttactctttagtacagtgacaattctagccccttcaaaattaccaaactgccatcattctcactatgctgctcctcactctctcaaattcccatttctcacttctcttcttcctactaaatccccatttcttcttaaagaaagctataaaagtgtaaaaatcaaagctttaatggaatcaggaatggactcaagtacaaaacctttttctgttctctttgtgtgtcttggaaacatatgcagaagtccagctgctgaaggtgtttttacagatttggttaagaaaagggggcttgattcaaagtttaagattgattctgctggtactattaattatcatgagggaaatgaagctgatccaagaatgagggctgctgctaaaaggcgtggaattgcgataacgtctatatctaggccaattagggcttctgatttcaaagattttgatctcattcttgctatggatgagcaaaacaaatctgatattcttggggctctggagaggtggatccatagagagccattgccagctgatgcagcggaaaaggtccgcttgatgtgttcctactgtaagaagcatcaggaaactgaagttccagacccttactatggtggagctcaaggttttgagaaggtactagatatgcttgaagatgcttgtgattcactgttggaaagcattgtgacagaacaaaatttaggttcatagatgtacttttatcaccagtattcttactgccaataaggcaattggttattcaaagcatataccatgtactctactgctcattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="54476" stop="58343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54774" g_stop="55146" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55147" i_stop="55749" i_length="603">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55750" g_stop="55885" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="509" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55886" i_stop="56218" i_length="333">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56219" g_stop="56286" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="577" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56287" i_stop="56372" i_length="86">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56373" g_stop="56459" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="664" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56460" i_stop="57882" i_length="1423">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57883" g_stop="58043" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="825" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E709782" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54774" e_stop="55146"/>
          <exon e_start="55750" e_stop="55885"/>
          <exon e_start="56219" e_stop="56286"/>
          <exon e_start="56373" e_stop="56459"/>
          <exon e_start="57883" e_stop="58043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAGGTATTTTCAATTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGTCTGTAAAATTTGTAACTTTTTGATTGATTCTGCTGGTAGCATTGATTATCATGAGGTATTTCCATTTGGGTGTCTGTAAAATTTGTATTCAAGATTGGTGCTGTTGGTAGTATTGATTATCATGAGGTATTCTCACTTGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTTCACTTGGGGGGCCTGTAAAATTTGTAGTTTATGATTGATTCTGCTGGTAGTATTGATTATCATGAGGTATTTCCACTAGGGGGTCTGTAAAATTTGTAGTTTATGATTGATTCTGTTGGTAATATTGATTATCATGAGGTATTTTCATTTGAGTTCTGTAAAATTTGTTAGTTATGATTGATTCTGCTGGTATTTTTAATTATCATGATGTATTTTCAATGATAATTAAATGTAATTTTTTATGGTTTTGAATATTTCTTGGAGTTGATCATGTTATAATGTTGCTTTTGTTTTTGTTTGTCTTAAAGGGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAATGTGGGTTATTGCAAAATCCCGTGTCATATTCTGGGTTATGTTTTTTTAGCTTTTCTTTTTATTAGGCCCATTTCATTTTTTATAACCGTGGTGTCGTGTCAGTTTGTGCATACCCGGACTAATTCCATAGGTACCTGTTACCTTCCACCAACACATATATCTGGTAACTCTGCTCACCAAGTTTTGCTTCTACTGAAATTTGAACTAGAGACCTCATGGTTAAGGGTCTATCTTGATTTTCCTACTTTATGTTCAGCTCCACATCTTCTTGGTATAATCTTGATGGTTTGAACATATGTACCGTATCAAGAACTGATTTGTTTTATAACACAGCTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAGGTTTTTGAATTGATAAGTCTTATACTGGTACTGGTTATCAACTGCATTTCTTAAGTCTGTTATCCTAAAAGTGCTTTTAAATTCAGGTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTGAGAAGGTAATGTCTGATAATCTCATAATCCATCTATCTTGTTACGCCATGATGAATAACCCAAAAGCTGCCTGATTTTCACATTTTAGATAGCGGAAGGCTTCTTGCTCCTAGCTATACTGGAGAATCTCAATTCTCACAGTGCTTACTTTGTTAATTTTAATGTTGGAGCATTATGATAGTCATACCACAATATGTTATGTTCTGTTGGCTTGAATTAAGTAGTTAATTCTCAATACTATGCCATATAATGCCTCGAGCTGTCAAATAATACAGAAGTATAATGGTTTAAAGACCCATTGCTCTTGATACACAATTGCTAACCACATTTTCATGGAAAGAATGGATGATGAATTGGAGAGATCATTGAATTTGTCCTCAACACTTCAGAATAATGAAGAAAAAAGTCTAGTTTATGTGTTCTTTGAAATTATGAGTGAATGACTTATTCTGCTTAGTTTATATGTCATCTATAATACAGCCTGCTGTCCTTTGCTTATACTAGAAGACTGATCTTGAAATACTAGTGCCATTTGAAAAGTGCACACAATAGTCACCTTACTCATGCTTACATGCAGTAAAGCCCTACTCAATAGAAAATTATCCAGCTTCTCACCTCATATTTCCTTCCCTCTGGCTGCACGGAGAGAAAAAGGAATGGTGTCTTGAGCTATAGCCCTGATAGCTAATTCTCCCTTCACTTCTTACCTTCTCGTTTAACCATTCTTCTAACTCCCTAAGACCCTAACAGCCTAACCCTTTCCAGTCCCTCAATCTCCCTGAAGTCATTAATTAACTCTGTTATCCTGACCTCAACCCTCCCCAAGTCCTACATATGAATCCTGATGCTTGTCTTTCATCAGCCATAGTTATAGTCTTATCGGTATCTTCAAGAAAGTACATAGGACAAAAATAGTCCTAAAATTTAGGCTATCGACAAGGATCGTTTGGAATATTTGGTTTGGAAAAATCCAAGGAGGTATTTTGGAGAACTTTTACCAAGTCCTTGTATGTTGTAAGAGGACTTCATATCTAGAAGAAAATTTTATAATTTGATGTTTCATTAAGTGCATGGAAATTTGGATACCTTTGTAGTTTCCCAAGGTCTTCTCAATAAGCCAAGCACATATTATCTTTTAATTCCTGTTGAATGATTTTCACAGAAAATGCTAGAAAAGCCCCATCTTAAAAAAGCAAAAGCTCTTTACAATGAGAAGAGTTTCTGCAAGAGGTCATTTCTGAAGGTCTTAAAAGACCTTATTAATTTACTAAGATGGTGTGTTGCTGCTACAATATATATATATTATGTGTAAACACTGTTCATTTGGATGAGTCAGTTCGCTTTTGTTTGCTGTTAAACTTGCAGTTGATGCTTACTGCCAGTGCCAGCAACATGCATCTAATTCTCAACTCTACATCTTGCTCACAGGTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</genome_strand>
        <mrna_strand>CGCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT.............................................................................................................................................................................................................................................................................................................................................CTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAG......................................................................................GTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTTATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716024" ref_strand="+" ref_description="SGN-E716024 [FB15DF10]">
      <seq>catgcataaaaatgaagaggcctgaaatagctgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaacttctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcatactgtgttgttacctaaagcttttgtatagttactatatatctgcgcgatatacatactagtgttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="59289" stop="58179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58989" g_stop="58471" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E716024" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58989" e_stop="58471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATTCTGTAG</genome_strand>
        <mrna_strand>CATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347473" ref_strand="+" ref_description="SGN-E347473 [cTOF-33-B4]">
      <seq>tgtcattcacagaaatgttctaacatagagtagaatcgaacatgtaaagagatacattgacagcagaaaagatgagttgattattgtaaacatgaactgttttcagctgactgtggcatgcataaaaatgaagaggcctgaaatagctgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaactnctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcatactgtgttgntacctaaagcttttgtataggtactatatatctgcgcgatatacatactagtgttgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="59405" stop="58177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59105" g_stop="58477" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E347473" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59105" e_stop="58477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATT</genome_strand>
        <mrna_strand>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTNCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGNTACCTAAAGCTTTTGTATAGGTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352558" ref_strand="+" ref_description="SGN-E352558 [cTOS-9-L11]">
      <seq>tgaaaaagcaattaagattgcggaaagacgcttatccagagataggtggcctgagtactacgatacaaggcgaggagggttcattgggaaacaagcacgtctgtttcagacatggactattgcaggatatctagtggcaaagctgcttattgccaatccagaggctgcaaagatggtaatcaatgtggaggatacagaacttctaagtgctttttcaagcattctgagttcaaacccaaggcgaaaacgatcacgaaaaggagttaaacagtccttcatcatatgaaagttttatttttgttacttaagccttaagtgtgtactattgacctgagatgaactcaaatggaatgataattgtcagtggagattcatatagtcgacccccaaagtgctcgagattgaagcataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="59258" stop="58248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58958" g_stop="58551" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="409" polyA_stop="424"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E352558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58958" e_stop="58551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGC</genome_strand>
        <mrna_strand>TGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315346" ref_strand="+" ref_description="SGN-E315346 [cTOA-24-H16]">
      <seq>tcaatggcgcgaggcttcttgatttctacacaaaccaaaaattcttcacattttcttctaaactccatttctgaaacttcaagattaactaaattaccctattacccttcttcatcatctctccgtttctctctttcacctcctccttctccacctcggtttctgtgcagttgttgcagtcacttccaagaaaatggcacaattgacatgtcagtacactcagaggcatttgcaaagcgtatggctatggtgggtctcaaaccccatcatcgtattggttttgcagttataaaatatcaaatccaattctgggcgtttctggtggccctgatagcatggccctctgtgtcttaactgctgcatggaaaaccaataaccttggtaatgctgctcaaaagaatgagtttgttgacgggcttttagcagtggtagttgatcatggacttcgtgctgagagtaaagatgaagctcaccttgttcatcgtcgagtcacaagcatgggaatcaaatgtgagattgtttgctgtgaatggtcagaaggcaagccaaagcagggtcacttgcaagaagctgctcgccagaagaggtatgaaattctccaaagtgcttgcatccggcatcagattggtgtgttgatgactgcacaccatgcagatgaccaggcagaactattcattcttaggttatctcgcagtagtggcgtgcttggactcgctggaatggcatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="62840" stop="65726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63140" g_stop="63416" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63417" i_stop="64396" i_length="980">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64397" g_stop="64425" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="306" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64426" i_stop="64533" i_length="108">
            <donor d_prob="0.064" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64534" g_stop="64728" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="501" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64729" i_stop="64821" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64822" g_stop="64906" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="586" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64907" i_stop="65066" i_length="160">
            <donor d_prob="0.405" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65067" g_stop="65142" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="662" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65143" i_stop="65357" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65358" g_stop="65425" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="730" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E315346" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63140" e_stop="63416"/>
          <exon e_start="64397" e_stop="64425"/>
          <exon e_start="64534" e_stop="64728"/>
          <exon e_start="64822" e_stop="64906"/>
          <exon e_start="65067" e_stop="65142"/>
          <exon e_start="65358" e_stop="65425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTGGTAAGTTTTACCCCTCCATTGTATTTTTATTTTTATTTTACTTTGTGGATACAAAGAAAGAAGAGCTGAAAGTGAGAAAAAGATTGCAGTTTTATAGTATAGTCGTTTATTCTTTTTGTTATAGTGAAATGCTGATACTTGCATCTTCATGGAGGATTCAATTTTACCAGGTCCATGTTGGAGATATTGTATAAGATGAAAAAATTGGTTTAGATATGTGTTACAGGAGTTGAGGGTCTATTGGAAACAGTCCTTTTAACTTCATTACTAAGTCTCTGTACGGACCACCCTTCTCAGACTCCACTTGTGGGAGGGATTACACCGGGAATGCTGTTGTTGAAAATATTTGTTTAGAAAAAGACTTGGTGTTATAATGAAATGTTGTTATAGATGATGATGTGGAGGTCTCAGTGTACCTTTTTTCATTGGTTTGAAAAGTGGTTTGCATGAGTTAAAAATCTTAATATCATGAGAAGCTATTTTACATGTTTCATGGGATGATTAGTACTACCCCATTCCTAATCAGAAGTTTCTGATTTGAGTTTGGGGAATGGAGCTGTGTTTAACAGGGAGCTTTTTAGCCCAAGTGGATAAAAGATTGCAACTTTGTATAGTACCCTTTACCGTCCATTTGTATATTGGTTTGCTTTACTTAAAAATCTCAATATCATGAGAAAATGTTTCATGTGTTCCATGGGATGATAGGTACCCATCCATCTTTAGCCAGAGGCTTTAGGTTTGATATTTGTTAATGGAGTCCCCTTAAAGAGGGATCTCTTTATCCGAAAGTGGATAAAAGGTAGCAGCTTTATAGTGCCTTTTCGTCCATTTTGTTATTGATTTGCCTGACTTAAAAATCTGAAAAGCATGAGTTTTTGTTTTATGGATTTTCAATTTTCTTGTTATGTAATATAGCTTACAAAGAATTGCCCAAGGAAGAAAATTACAGCTCATGATTTATTTTTCTCTTTGATTGGTAGGTTTTGCAGTTATAAAATATCAAATCCAAGTAAATTTTCATGTTTGGCTATTCTCTCTTTAACGACTATTAGATTAAAATTTCAAATTCCAAGTGTGGTTTTGTGGTGACCATGATTCTTCTTGACCTTTTTTGTAGTTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGGGTATATATGTTCCTTTTAACTTCTTCTTTATCATGAATGTAGCAACATTGCTTAATACCTTTTTAATAGAGATATAATGTAGGCCTTGTATAGGAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAGGTCATTACCAGAGTTTCAAATCATCTTCAGTGAAATGCTATTTCAGAGCCTTGTCATATCTGGTTATGCTGGTTTTTTGACTGACTATGTTATACATTCATCCTGATGTTAATATGTCGTCATTATTGTGAGTAAATAAGTTGTCCCTCGTCTTGTTCAGGTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAGGTATTAATAGCATTTACTCTCTGGATTTTTGTATTTTGTCTCTAAAAACTTAGCACTTATAGATGGCAATCTGTTTAGTTTTGTCAATACATTAAAAAGAGCTAATGGTATTTGAATACAATTGATGTTGCGCTCATGCAAATGTAAGTTGAACATTATTGCTTTTGACAACATTGTTGATAGTTTTAGCAATTGCTAATCGGATTACTCTACAGGCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGT</genome_strand>
        <mrna_strand>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCAGTTATAAAATATCAAATCCAA............................................................................................................TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG.............................................................................................GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG................................................................................................................................................................GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG.......................................................................................................................................................................................................................GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313984" ref_strand="+" ref_description="SGN-E313984 [cTOA-19-O14]">
      <seq>tccaaagtgcttgcatccggcatcagattggtgtgttgatgactgcacaccatgcagatgaccaggcagaactattcattcttaggttatctcgcagtagtggcgtgcttggactcgctggaatggcatctgtttcagagctgttttttacatgtccagatttaagtgctgaagtgagtagcaatggacttttattggtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="64778" stop="65794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65078" g_stop="65142" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65143" i_stop="65357" i_length="215">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.787" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65358" g_stop="65494" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="202" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E313984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65078" e_stop="65142"/>
          <exon e_start="65358" e_stop="65494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAGGTATTAATAGCATTTACTCTCTGGATTTTTGTATTTTGTCTCTAAAAACTTAGCACTTATAGATGGCAATCTGTTTAGTTTTGTCAATACATTAAAAAGAGCTAATGGTATTTGAATACAATTGATGTTGCGCTCATGCAAATGTAAGTTGAACATTATTGCTTTTGACAACATTGTTGATAGTTTTAGCAATTGCTAATCGGATTACTCTACAGGCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</genome_strand>
        <mrna_strand>TCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG.......................................................................................................................................................................................................................GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309095" ref_strand="+" ref_description="SGN-E309095 [cLEZ-1-O9]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81920" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82220" g_stop="82304" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86819" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="657" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="668"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E309095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82220" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713398" ref_strand="+" ref_description="SGN-E713398 [FB08CB03]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81920" stop="87118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82220" g_stop="82304" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86818" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="656" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E713398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82220" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCT</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304238" ref_strand="+" ref_description="SGN-E304238 [cLEX-6-B20]">
      <seq>agaaaacggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81920" stop="86968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82220" g_stop="82304" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="185" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="373" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86668" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="506" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E304238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82220" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</genome_strand>
        <mrna_strand>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300550" ref_strand="+" ref_description="SGN-E300550 [cLET-45-M11]">
      <seq>gcggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtgcccaaacacctcagggaaactgctgtaattgaatgtgtacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81926" stop="86959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82225" g_stop="82304" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="180" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="368" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86659" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="492" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E300550" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82225" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATT</genome_strand>
        <mrna_strand>GCGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTGCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374272" ref_strand="+" ref_description="SGN-E374272 [TUS-33-F2]">
      <seq>ggagaagcatacttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81927" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82227" g_stop="82304" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="178" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="366" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86819" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="650" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="665"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E374272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82227" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>GGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345899" ref_strand="+" ref_description="SGN-E345899 [cTOF-24-B3]">
      <seq>cttcccgtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81938" stop="86075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82238" g_stop="82304" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="167" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="355" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E345899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82238" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG</genome_strand>
        <mrna_strand>CTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340677" ref_strand="+" ref_description="SGN-E340677 [cTOF-1-L7]">
      <seq>gtagttgtagcagtagcttgccggagccggcgatcggagatacttccgtccatagccgaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="81944" stop="87117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82244" g_stop="82304" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85389" g_stop="85488" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="161" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="349" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86536" g_stop="86817" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="631" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E340677" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82244" e_stop="82304"/>
          <exon e_start="85389" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAGGTAATTAAACACCTTCTCTACTTTCGAACAACTTCTATGTGCACAAAAATTGTTTCGGTTACTCGATTATAATTCTTTTTATGGATTTTTGTGCAATGATAATTTCGATGACGATCCTTGTAACTATGCTTCATTGAACGGGGTGTTTATAGGAAACAACCTCTCTAACTCGTAAATATAGGAGTAAGGTTTGCGTATAGTTTGTCCTTCACAGACTCCACTCGTGAGACTATATTGAATATGTTGTTGTTTATAATATCTATACCTCAAGGTCTGTGTGCACTCTTCGAGCTTGTTAGACTCTACTTCGTGGGACTACAATGAGTATGTTATGTTGTTAGAATCTCTCATGTGATGATAGTGGAACAAAACTTGATTGAACATAGATAGTGGTGGAAGTAGGAATTTATACAAAGGGATTCAAAAGTGGTAGCGATTTCTGAAATCCTTTGGGCTTTGTCACCTCAATAAAATTATCTTATGTCTAGGGGATTCAACTGTTTTAATTATGACAATAACGTCATACCAACCCACTGTAATTGTAATCTCACAAGTGGGGTATGGGGAGAATAATGTGATGGCTTTTGTAATTGAACGTCCTGGCATGAAATCGAACTGGTTCTCGGAAATAAACATGTTCCTCCTCACCCTTCTCCATCACCTCTCCCAAACCTTCATAGTGTGGCTTAACAACTTGATACCCTTATAGTTGTTGCAATTCTGGAAAAATTCCACTGTTTTTATAGAACTGAAAAATTCGTTTTTTAGCCCTGTTTGCATCGTATGGTTTTTTCATGAAATGGTCAATGCTCATAGTAGGTGTAGAAATATATTCAGACGGGAGATTATTGAGGAAACTGTGGAAGATTTAAAAGAGATTTAAGAGTGATCTTTAGAATTCTATGAGAGACTATTGTAGGAAAATGGAGCATTCGGAACCAGATTGATAGGATGATGATTTGATATTCTTAATACCAGAGTATAAATAATGTTACAAAATTCCTTAGAGAAAAAAAAATGAATCTATTTTTGGTAGAGAAAGTGAAGGCAGTTGTAATAAGCAATGTTCATGATAAGGCCCTTCGTCATTATTTCTGAGATGCCTGTTAATGTTGGAATTTTTTTTGAAGGGAACCTTTTTTGGGAAAGTTTTAGTGCCGCCTTTATTGCTGTAATAGCAAAGAACATAGACAGTTGAATTGAAAGATCTCAGACTAATTAGCCTTTAGTTAAGAGGATATAATCCTGCCCTGCTTGTTAGCAGATGATGGCCAAAATGCCTGTTCTATTTCTAGGGGTGATGGGGTCTCTCATCTTGGTGATAATATGGACCGTGAAATATGAGTGGATAAAAGGTTTTGGGATTGGTAAGTAAATAGAAGCATAGTGGAAGTATTGCCCTGCTTGTTAGCAGATGATACACACTGTGTGGTGCTGAAGTAGTGGTAGTCGAATATTTAAGATAATAGTGCTCCCAGCTGTTGTTGCTATTGCTGGGTATCACATTAACTTGACCAAGAGTAGCATATTTTTGGTGAATGCTAGAAATTTAGTAGATGAGCTGGCAAGTACACATATTGGGGACTACAGTGGAATATGTCCCGCCAGATTGGCCGGATGTTATCAAATGGTGTGGAACTAGGACCTTGAAAGAAGTAATATCTTTCTTTTGGAGGAAGGGTGACATTGATAAATAATGTATTAGATATTTCGGCTGTTCAAATTCTTACCGAAGTTGAGAAACAACTGGACTACTTGAGATGTAAAGAGATGCTGTGAAAGAAAGAAGGTATATTTGATCCAATGGTCCACACTGACAGTTGACTAAAGCAAAAACTAGTGGAGAATTAGTAGTGAAGAAACTAAGGCTTCATAATAGGAGCCTTCTTTTCCAATGGCTGTGGTATTCTGCAGAAAAGGAAGAGCTATGGAAGGAGTTGGTAAAAGAAAAATATGATGTGGATAGACAATTAGATAGAAAGCTCGACATGCTTGTCATGGTGGCTGTATGTAACAGAGTAGGAACCTATGACGAGTTTTCAGAAGTAATCAACTGAAACTGCATTGTGGTAAAAGATACAATTTTTATAGGATTAGGATAAGGTGCTGGATAACTACAGATCGAGGGAGGTGTGAGGTTATCTTGCCCCTTGGCCAACTGCCTGAATGATGATGAGGAACCTATAGTATAGAAGAAATCTGGAGGATCGAAATATTGAAACTGTTAGCTGTCAGACCGGACCGGATCCTACTCAAGAGTACCAGACCTAATGCCAGCATGAAGGATGATAATTTCTCAGTTAAGTCTTTTTATGAATGGTTATAAGCAGAGTATGATGGGATATTGGCCATTTGCCATGGAAAATGATTTGGAAAGCAAATGCTGCTGGCTAGAGTTTCTGTTTTGAATAAATTGTTTTGCATGAGGAATGTCTAAGACAGGACAACTTGCCAAAGTGAGGAATTAGTCTGTGCAATAGATGCTTTTTACTGCAGAGAGAGGCTGTCTTAATGGAAATACCTATTGATGTAAATAAGATAAATCCTTACTTGGTTAAAAGAAAAAAACAAATAGGGTATGGGTGAATTGTGGATGCATTAAGCAGCTTGGGTTTGATTTTGGGACTATATGGATGAAGTGTGGATGCACTAAGTAGCTTTGGGTGGGGTGGGGTGGGGTGGGGGTAGAGGTTTTAGAAGAGCCAGAGAATGCTTTGGAATATGATTTCTTTTCTATGTTTGGGCAGTCAAAGAATGGAAGGAAGCATAGATGTTTCAGGATATAACCTTATCCTTACTGGGAACTTTCAATATTCTTACAGAATATGTACTTTTGTAGTAATAGATGATCCTGTCAATATGGTGGAATTCATAGACTCCCTGCACTCTTACAGGGAATGATTCCTCACTCATTTTGTACTGACATAGCATCTTCTTGATGCTGGTTATTGACGATAAAGAAACTTAATTTTCCTATAAAAAAATGTTTTCATGTTGTTGGTACATAAATTATTGGGGTATTGCTACTTTTCTCTTTATGTTGTCTTACAGATGGAATAAGTCTCTTCATTTTTTTATTTGCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCC</genome_strand>
        <mrna_strand>GTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309096" ref_strand="+" ref_description="SGN-E309096 [cLEZ-1-O9](-)">
      <seq>gaagctgaaaatgcctagagttaagacaaaccgtataaaataccctgagggttgggagttgattgagcctacgttagctgaactggatgttaaaatgagagaagctggcaatgactctaatgacggtaaaagaaagtgtgaagcactctggcccatattcaaggttgcacatcagaggagcagatatgtatatgacctttactatggaaggaatgaaatatctaaagagctgtatgaattctgtttggaacaaggttatgcagatcgcaacttgattgcaaagtggaaaaagcctggatacgagcgtctctgctgcttgcactgcatacagccccgggatcacaactttgcgactacttgtgcgtgtcgtgtccccaaacacctcagggaaactgctgtaattgaatgtgtacattgtggatgtcaaggttgtgcaagtggtgactaatttgcttttccaatagctgtatgttatgagatcagatgttcttactggcttttcaaagcattagaaaccttttgtctgtaatgaccaaggatagtgatggattattcagtctttaaccttttatcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="85085" stop="87119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85385" g_stop="85488" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85588" g_stop="85775" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="292" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86536" g_stop="86819" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="576" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="586"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E309096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85385" e_stop="85488"/>
          <exon e_start="85588" e_stop="85775"/>
          <exon e_start="86536" e_stop="86819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAGGTAAGTAATTTGATGCTAGGTGGAATTCAGCAATCCCATTTTGCCTTTTTTAATTGAAATTCCAGACCATTAACTTCTGTTTTATTTGGGTTTTGGTAGCTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAGGTAATTGATGGCAACTTCCTTTGGAACTTATAAAATCTGTCTGTTCTAGTTAACCGCCCTGCCTCTTGCTCATCTAAAGTCAAAGTGAAAAAGTAATAAAGAGGGTGAAAATTTGTGATAGCTACAGTTTTTCTCTCTTTACATCTTTGGGATGCATACAAAACCCCTTCATCTTTTTAGTTTTTTTTGACAATTTGCCCATGACAAGGGAACAAGAGCAAATGCCCAAAAGCACAGTACAAAATGAAAAACTAAAAAAGGCGTTCTTTTCTTTTCTTCCTCATCTGCTGACTTCATCTATGTCTGTTAGATTTTAATATCCTTTCTAGGGAAATATTCATATATTTACTAATCTTTCAACATATTATCCATATTAAACATTGTTTGTCTTAGTTAGATGCTAGTTAATGGATGGAAAAGTTTGGAAGATAGGAGGCGTATTTTATTCCAGAAACTTGAAGCTTACCAAGATTTAGCATGTTTTGCCTCTGGAAACAGATTCATAGGCATTCTAGGAAAATGATTCTTCTTCTTTTTCTTGGAGAGGAGGTGTGATCTTTTTAAAATACCTGCACCGTTCTATTGAACTGTGTTTGACCCTTTGCTTCTTATCACCCATCAGATACTTTCTTGCTGAGACGGTAAACAAACGTTTTTCAGGCTTACAGCTTATTTACAGGCACTAAAACCCATCTTACCAGCCTTTGTATTTGGTCACTTGTATTTAACTCTTTCCTGTTTCCTGGGATTCGACTTGCAGCCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</genome_strand>
        <mrna_strand>GAAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG...................................................................................................CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537428" ref_strand="+" ref_description="SGN-E537428 [TUS-56-A11](-)">
      <seq>ttgttatcatccataacagtcccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaactaaagaaccattgacagacaaagtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgatttcgaaacgaagaaacgaagttctgtgaggagcaagaagcagatcaaggttattgcagttgcaccatgagaaggaaagaccaagttttagtttggcagggcaaaaatatatgttctgaatgatagctagacactttggctttgggttttgcttttgcttgcagctaattatattttgctatctaacttgatgaaagtagatacacccaaatatcatcatatatatatatatattattatatatatcatcatatcatatattattataaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="101883" stop="47844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101583" g_stop="101494" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101078" g_stop="100532" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="637" r_length="547" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100531" i_stop="99292" i_length="1240">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.589" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99291" g_stop="99273" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="656" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E537428" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101583" e_stop="101494"/>
          <exon e_start="101078" e_stop="100532"/>
          <exon e_start="99291" e_stop="99273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAGTTGGAAGATTTTAAGTTCAAAGTTAGCTTATTAAAATGCCCTTCACTTATTTATTAAATTAGAAAATGTCATTTACAAAATTTGAAAATTAAATAAATAATGATAGCAAAACAGTTATTTTTTAATCTTTAATTATTGATCCTTTGAGTTTCTGCAGTTAAACTCATTCCAGCCGAACTTAATGCGTTACACTAAATTCAATACTTAAGATTGAAGATAGATAGTCATAATCTCTTTGATTACAATTCAAAAACGTTTCATGTCATATTTTTCTTAGTTATTGTTGATCAATGTTCATATAATTTTCTCCACCTTTTCATATTCTTTACATTACAAAACTAGTTTTCTATCTCTCATTTTCCATTCATTCTCATTCTGCTAGAGATTATTTTTTTCCAGGTATATTTATCCTTTTTATATATGTATGTGTGGTTTAAGCCTCAATCTTAATATGTTTAGTGATATAGTGTTTGATATGAAAAGGGAATGATTATTTTTAAATTAGAACTATTTATCCCAATTTTTTAAATTAATCTTTTGATTCGTATAATTAATTTTCATCTTATGAAAACAAAGATCAAAAGATCTTCGAAAATGAAAATAATGTTCGTCAATTTTTTTATTTTCATTTAAAAAATACTATTGTATATTTTTTTAAAAAAAGAATGTAATTCATATAAGCACAAAAGAAAAAGATTTTTATATTTGTGATTTCAGCAATAACTAGAATTGCATTTATTTCTTCTTCATGTCTTTGCTACTTTCGTCAAAGACTTTTATATCTGTTTAATATTTTTTTCGAGTAGAAATTCATTGTAAACTACTTCAATAAATAAGTTGTTTGATCTGGAAAAACAATTAGCTATTCATAGACATATTCATACCATAAGAGATTAAATCATAACTAAAATTGTTAATTTCTGCATTTCTTATTATATAACTGAACTTTATAACGAAATATTTAAAATAAAATATTAAGGAACAAACGTACAACGCACATTTCAGATACTAGTATTATTATAAGTGGGAAGATTTTGAGTTTAAAGTTACATTACGAAACTGTCCTTCACCAAATTAAAATATTATAACACGTCAAATTATTTAGATATTAAATGCACATACAAAATTCATTAACTATTTTTTATCTTGAGAAAAATTGAAAAAGAAATTAAATGTGGAATTAGAGAGTTCATGTATCTATTTCATTTGTACTACATTATCAAAAATCATGGAATTTTAGAAGAAAAAAAAGATGAAAC</genome_strand>
        <mrna_strand>TTGTTATCATCCATAACAGTCCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395748" ref_strand="+" ref_description="SGN-E395748 [TUS-17-F2](-)">
      <seq>tccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatttacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgaagaaactaaagaaccattgacagacaaagtaggtaaaatcctttatggttaccttggaattgcagaagacctggacaaagttgatttcgaaacgaagaaacgaagttctgtgaggagcaagaagcagatcaaggttattgcagttgcaccatgagaaggaaagaccaagttttagtttggcagggcaaaaatatatgttttgaatgatagctagacactttgggtttgggttttgcttttgcttgcagctaattatattttgctatctaacttgatgaaagtagatacacccaaaagtcatcatatatatatatatattattatataaaaaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="101863" stop="100233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101563" g_stop="101494" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101078" g_stop="100560" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="589" r_length="519" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="616"/>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E395748" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101563" e_stop="101494"/>
          <exon e_start="101078" e_stop="100560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATAT</genome_strand>
        <mrna_strand>TCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATTTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGAAGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTTTGAATGATAGCTAGACACTTTGGGTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAAAGTCATCATATATATATATATATTATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284785" ref_strand="+" ref_description="SGN-E284785 [cLES-3-D4]">
      <seq>tttttttttttttgggtgtatctactttcatcaagttagatagcaaaatataattagctgcaagcaaaagcaaaacccaaagccaaagtgtctagctatcattcagaacatatatttttgccctgccaaactaaaacttggtctttccttctcatggtgcaactgcaataaccttgatctgcttcttgctcctcacagaacttcgtttcttcgtttcgaaatcaactttgtccaggtcttctgcaattccaaggtaaccataaaggattttacctactttgtctgtcaatggttctttagtttcatcgtcattgtttccagactgaccagaacttatacgctggaaatccgcccttccatgcttccgatgggcgtagatatcacacagtctcactgcttcttccaaacctgagagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="+" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="100281" stop="101298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100581" g_stop="100998" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="+" ref_id="SGN-E284785" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100581" e_stop="100998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGATGATATTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395749" ref_strand="+" ref_description="SGN-E395749 [TUS-17-F2]">
      <seq>tcaaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaactaaagaaccattgacagacaaagtaggtaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="106540" stop="100546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106240" g_stop="106107" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106106" i_stop="101802" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101801" g_stop="101494" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="442" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101078" g_stop="100846" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="675" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E395749" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106240" e_stop="106107"/>
          <exon e_start="101801" e_stop="101494"/>
          <exon e_start="101078" e_stop="100846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATC</genome_strand>
        <mrna_strand>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210503" ref_strand="+" ref_description="SGN-E210503 [cLEC-35-D9]">
      <seq>caaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtgtggttgtatcagctgaagagctcgagtctaagctgagagatatgggcttcggggagaaggccaaggtttctcgtggtaagcctgcaaatcagagtattcttatggtgaagtttagcgctactctctcaggtttggaagaagcagtgagactgtgtgatatctacgcccatcggaagcatggaagggcggatttccagcgtataagttctggtcagtctggaaacaatgacgatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="106539" stop="100580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106239" g_stop="106107" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106106" i_stop="101802" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101801" g_stop="101494" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101078" g_stop="100880" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="640" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E210503" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106239" e_stop="106107"/>
          <exon e_start="101801" e_stop="101494"/>
          <exon e_start="101078" e_stop="100880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAGGTAAGTTACTTTTGGTGGTCTGAAACACGCTGGATACATTTGTTTGGTTATAAAATCATGTTATTAGTGTGTCAATAAAATGGGTCGCGGGGATTAATAAAAAGCTAGCCACCCGCTCATTCCCTCCCTTTTAAAAGGCAATACAATTAGAAAAGGATATTACCTGTACTGGTTCAAATTCCTTTACTTGTGGACTTTTACCCTCAAACTCGTTCAAGAACTCGGGCATATTTTATTTTTGATGAAGACATTTGTTTCACCTTACTTCCTCTAGGGACTAAGAAGAGATATATCTCAATTCGAAAGGATATTTCGCCTCATTGTTTAATCGATTTGCTGCTTGATGAGATTTTCAGATGTTCGATTGCTTTTATCCTTGTATCCGCTAGTTTAGCTGAACAGCTCTTTGTTACAGATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAAC</genome_strand>
        <mrna_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364148" ref_strand="+" ref_description="SGN-E364148 [cLPP-16-K16]">
      <seq>ttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactctgcaccaatcgcatcatcatcatcatgatcagaagagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtagactcagaaagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatcccgatcagcgtgtggttgtatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="106533" stop="101221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106233" g_stop="106107" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106106" i_stop="101802" i_length="4305">
            <donor d_prob="0.786" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101801" g_stop="101521" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="408" r_length="281" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E364148" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106233" e_stop="106107"/>
          <exon e_start="101801" e_stop="101521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAG</genome_strand>
        <mrna_strand>TTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTCTGCACCAATCGCATCATCATCATCATGATCAGAAGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTAGACTCAGAAAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCCGATCAGCGTGTGGTTGTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339634" ref_strand="+" ref_description="SGN-E339634 [cTOE-16-N10]">
      <seq>gaaggtattactactacagcaaaacctgaacctcctgagaactctaaggattttaagcagctggtccaaaatgccttcttcaggttcgtgaggcacttgaatgagactccagctaaaagaagaaaattcagtgagcaagctggtagtttaaagtgcctcgtgtgtggcagagattcagaagagtttgtagactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagctatccaatgctgaaactgtggctttgaaggaagatctaatcatctggcctccagttgttatcatccataacagttccataactagcagcaatccggatcagcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="103660" stop="101233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103360" g_stop="103191" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103190" i_stop="101802" i_length="1389">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101801" g_stop="101533" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="439" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E339634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103360" e_stop="103191"/>
          <exon e_start="101801" e_stop="101533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</genome_strand>
        <mrna_strand>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210415" ref_strand="+" ref_description="SGN-E210415 [cLEC-35-C11]">
      <seq>caaatcttccaatttgacgccattacagacgcatcacagttctccatcttcgtaactttgcaccaatcgcatcatcaccatcatgattagaggagaaacagtggaatttccttcatattctcatcttaaaaagagattcagaagagtttgtatactcagagagcctcgtgcgtcatgcattaacatcctctaaggctggtctcagatcgcagcacttaggccttcacaaagctttatgtgctttgatgggatggaagagtgcagattctcatgaagatagttgggtttgtgaaaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="106539" stop="101336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106239" g_stop="106107" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106106" i_stop="101802" i_length="4305">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101801" g_stop="101636" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="299" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E210415" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106239" e_stop="106107"/>
          <exon e_start="101801" e_stop="101636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAGGTTTGAATTTGATAATCTGTTGATCGCGTTTTTGCGGATTGTTTGATCTGAAAGAGGTATTTTTGAATACCCTTTTGCTTGAATCGAATATATTTTAGCGGTAGAAAGAAGTTTACGGACGAATATATAATTTATTTTAGGGTTAGGGTTTCGGGGATCTGTCGTTTTGCTGTTGATTAGCAAGTTAGTTTTTTTTTTTTTATGTTGTGCTGTGAAATTTTTGGTGATTGAAAGTGGGAAGCTGTTGTTTGCTGTAGAAGTTTGGGTTGATTTAGGTTGGAAATTGCTGAAGTTTAGTCTTTTGTTGATAATGAGGGGGGAGAGGAGATTTGGAGGAGATGCTAGAGGTCCACCACGGTTGCCGGAAAGGAGAAAGGATCGTGGTTACTCGCCTCGACAGAGGAATAGGAACAGGGATTACTCATCTCCACGGAGAATTAGGGATGAGGGTTACTCGCCTAGACGGAGGATAAGAGATAGGGATTATGTGTCTCCACGGAGGATTAGGGGCTCACCCCCAATGAGGATTCAAGAGCGGAAAAACTCACCACCAAGGAGGTATCAGGGGCGTGAATACTCACCTGTGGAAACTAACAGGAACCGCGATCGCTCACCACCAGTAAGGAGACGGAACCAGGAATACTCTCCACCAGGAAGGAATAGGAACATGGAGATTTCGCCACCAGCAAGGACTAGGAACTGGGAGCAGCACTCACCAGGAAGGAATAGGAACAGGGAGATATCGCCACCAGTAAGGACTAGGAACTGGGAGCAGCGCTCACCACGTGGACGGAGTAGGGAGCGTCACCTTTCACCTAGTGGCCAGATGATTAGTGAACAGCGGGGTGAGTACTTTCACGAGCTTGAGAGGTCGAGAAGGATGGGAATTGATGGTGGTGGAGACTTTGGAGAGTTGCAGAATGCCCGACCCATGAATTATGTTGGTGGAGATAGAGATTATGGGCCATCTCAGAGCTTGAGAATCTCTGATCGTGATAGAGGAAACACTGACATTCTTGGTGAACATTCACACAGGCTGCATGAGATAAAGGAGGGCTCAGGGAATGAGGACTCAACTTCTAATAAGTATCCATGGAGCCATTTGTTGGATAAGCCCAGAAAGTTTGATACTGTTAATGGGTCCAGAGAATATGGAGTTAGTGGTAGTAGAGTAAGCAGCGAGAGAGAAAATCGTGGAAGGCCTTATCCGGGTTTCGGTGATGGTATCATTTCTTCAGAAGCTGATAAGAGGGCGTTGTACTCTTCATATGAATCTCATCTCCCTGATGTTGGTGCACAGCCAAGAATCTCTGGCATTGGAAATAGTGGTGGCTACTCTTTGGCATCACGTTATTTGGATGCTGATCCTATCAAAGATGAGGAAATACATTTACAAGAAGGTTTCCATTCTCATAAAGCAGCAGGAAGAGGAGTGCCGACATCAATGGACCCATACATGGAGGACTCCTTGAAGACCAGACGATATTCAGAATTCAATACTGAGTACGCGATATCATCTCAATCTAACATGTTGCCCGGAGTTAATAAGGATGATATTGCCAGTTCATATGGTATAGAGGGCCAAATCCATTCACATGGTGGTAGACTGGACAGTGGAAAGGCTATTGAGTCTATTGGCCATGACGGATATGATAAAAGTCCCAGGACCATATCATCTCTGAACCCTGAAAAGCAAGTTAGTGGGTTCAGGAACTACACGGAGTCTTACTTTGGTCGAGCTGAGGAAAGGCGTGAAGCATACAGTTATTCTGACGTTCAAAGAGGTGAAGTTGGTAGTCCTAATGCCCTGTCTAGTGAATTCTATGGGAAGAGAGTGGGTTCTGGAGAAGTACATCTTCAAAATCTTCCAAGGAACATGGGATTGGGCAAATATGATGAATTTTCTCATCGGGAGATTTTGATGGAAGATAAGCCACGGGAATCTCTTTTTTCTTCACAAAGACGGTCACCGCCGGATTATTTTGAGTCCCGCAGAGCACTAGACCAAAGAAAGCCAGATTTGGACATATTGGATTATGGGGCTAATCGTCTACAGTATGAAAATGAATCACATCGAGGCTATGAAAGCTCCCGTAAAAGAGAGCTTCATAAGTATCAGATGGATGATGATCTTCTAGAAAGATCTGATGCCTTGTATAGAGAATACGACCCCCATTTAGAGAAGATAGAGGCAGGTTCTCGTGAAAGATTTATTTCAAGGGACTTGCCTGGATCATCTAATTTTTCTCTTAGAGAAAAACATGGCACAATGAGCAATCATGGTGCCGGAATTATGATTTCAAGTGATATAAGGACTGCACACATAACCCATGACCGTGGAGATGCTGATAAAATGCGGATCAGTAGGGATATGGATTCTGTAGTTATGTCTAGAAAGCCAAATGTTCCACGCTCTAAATATGCGAAGAATGGTAGGCCACACAAAGCCACTGCAACTATTAGTTCCACCAGAAACCTTTCAGTGTCAATGTTGAGACGTACAAGCAAATTTAGTAAATCTGGTGGAAGTGATATAAAGAAGCGGCTGGGGCCACGTTACCAGAATGTTGATGTTGAACGCCCACTAGGAACAAAATATAAATCTTCACTGAAGAAGCGCTTGGGACCCCGTATAGTGAAGAATCATGCACCTCCGCCGTGGGTGAAAAAGTTCAATTCTCATGAGCTCTCTAGAAATCAAGATACTTTAGATGAAAGTGTTGTTGAACCAGGTGATGACCCCAAAGAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAGGTAGGTCTGTCTTTTACATCATGAAATGTTTTAATAGATGGAGTAAACTCCTTCTCTTTTAATTGAACTTATTCATAACTATATTGCTGCGGTCAAGTCAGTGGAAGTAATTCATATTACTGGTTTTATGAGGACTCATTTGGCTAAAGTAAATAAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGATCAAATAGGAGAATTTGCTTACATGTATACTCGACTATAGGCATTTGCATTTTTAGCGACTAATTCCAGATCTTGTTAGGCAGACATAGTTTTTAGCCTAGTCTTTGCAGATCCAGTTAATCTTTGTGAGCTTTGGATTTTGCTTCTCTCACTGGCTTATTTTGTATTGGACGAGATGAGAAATTTTTCTTGATGAGTCTTGTTTAAAGATAATGTCTGTTGTAGTTGCCACCTGAATGAAGAACTTAAGTAAACACCTGCAGTTCTGTTGTCTTTTGTGAAAACTAAATTCATTTTAGAGGTGTTTTTGGTTGGTAAGTTGAGTAACGGTCTATTTGTCTGTTTAAGTATCTAGAATGTCATTGCTTACCTTTTTGCTCCTAAATTCCATCTATATTTACTGTTTACTTGGAGAACTGTATAGCTTATTTTCTTTGCTTTGTATTGACCTTGTTTTGTTTCTGAAAACTTTATCGGACCTTTTCTTCATCAAGAACTTCACTGGACTCTTTTCTTTATGACGTCTTCTATGCTGTTTCAGAGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTA</genome_strand>
        <mrna_strand>CAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCAGAAGAGTTTGTATACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537431" ref_strand="+" ref_description="SGN-E537431 [TUS-56-A11]">
      <seq>aaggagactagctgggctcccatgaggcgttttcattccatgctgcttcaacccatgaagtctgttggagtaaaaaaaaaaatcctgcacggacggaatgaaatgtgcctgaatacagtcgttatataaggattttttttatatatttggctctaagtagtgtggtttcaaggattactttattgatgcatggaaactccggagttggagaaaaagttcaattatgtaggtcggaagtcttattgttcaggaaattatataacccaaagcttagggcatttcctctcgatctggctagttagcaccatctcatataaggtgcttattatgaagagcaaatgtattttttgagttagtacatttgcccttatcttaaaatggtgcttacaaagaagatcaaataccttggttgttcaaacaaccatgactttgaggaaatgaaaagggaagatgttgaatgagttgctaaagaaacctcttctgctgttcccttaagtatttgacactaacctggatttgacacaccagatgttcaagtggtgtgattgcttgggaaaggggctgtagctgaagcagtttgtttgataattgggtttaaaatagagctataacagtttgcatatttcttattttaagtctgatgattagtagcgtctccacttaaccatagtcaatgttgatcctactgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="103336" stop="102043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103036" g_stop="102343" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E537431" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103036" e_stop="102343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTT-AAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</genome_strand>
        <mrna_strand>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGACGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCT-TCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAAATAG-AGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265138" ref_strand="+" ref_description="SGN-E265138 [cLEI-2-O15]">
      <seq>aggagactagctgggctcccatgaggcgttttcattccatgctgcttcaacccatgaagtctgttggagtaaaaaaaaaaatcctgcacggatggaatgaaatgtgcctgaatacagtcgttatataaggattttttttatatatttggctctaagtagtgtggtttcaaggattactttattgatgcatggaaactccggagttggagaaaaagttcaattatgtaggtcggaagtcttattgttcaggaaattatataacccaaagcttagggcatttcctctcgatctggctagttagcaccatctcatataaggtgcttattatgaagagcaaatgtattttttgagttagtacatttgcccttatcttaaaatggtgcttacaaagaagatcaaataccttggttgttcaaacaaccatgactttgaggaaatgaaaagggaagatgttgaatgagttgctaaagaaacctcttctgctgttcccttaagtatttgacactaacctggatttgacacaccagatgttcaagtggtgtgattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0139J14-AXyxp/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0139J14.2" temp_strand="-" temp_description="C11HBa0139J14.2  AC212436.2 htgs_phase:3 submitted_to_sgn_as:gi|166159194|gb|AC212436.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0139J14, complete sequence">
        <position start="103335" stop="102186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103035" g_stop="102486" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0139J14.2" gen_strand="-" ref_id="SGN-E265138" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0139J14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103035" e_stop="102486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCT</genome_strand>
        <mrna_strand>AGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCT-TCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>91</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8372" PGL_stop="7868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8372" e_stop="7868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="8372" e_stop="7868" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8372" stop="7868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTGCCACACAAAGTGGCATGCTTCACATGGCTACTAGCCAATGAAGCAGTTTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATATCTTCTTGCATTGCAACTTTACTGGGCAGCTGTGGCAGATTTTCCTTTATCTCAGAGCATATCTTGGTGTATGCCTAGCAAGATTGATGAGACTCTATTCAGTTGGAAGATGGCTGGAGTTGCGGCTACAAACAGAGAAAGGTGGAGAATGATCCCTGCTAGAATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATATTTTGAGAATTGGAACAACACCCTGCAGGAAGTTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAGACTGAGTCAATCATCGATATTTTAGGATCCATTTAGATTTGGTTCAGTTTTTTGGATAGATTATACTTTCT</gDNA_template>
            <first_frame> K  V  P  H  K  V  A  C  F  T  W  L  L  A  N  E  A  V  L  T  L  D  N  V  A  K  R  G  I  S  L  C  N  R  C  S  L  C  G  K  A  N  E  T  V  R  H  I  F  L  H  C  N  F  T  G  Q  L  W  Q  I  F  L  Y  L  R  A  Y  L  G  V  C  L  A  R  L  M  R  L  Y  S  V  G  R  W  L  E  L  R  L  Q  T  E  K  G  G  E  *  S  L  L  E  F  G  G  L  Y  G  G  R  E  T  R  D  I  L  R  I  G  T  T  P  C  R  K  L  S  L  S  V  F  C  C  S  A  F  G  V  Q  M  S  T  P  M  R  L  S  Q  S  S  I  F  *  D  P  F  R  F  G  S  V  F  W  I  D  Y  T  F  </first_frame>
            <second_frame>  K  C  H  T  K  W  H  A  S  H  G  Y  *  P  M  K  Q  F  *  H  W  I  M  W  P  R  E  E  S  L  Y  A  I  D  V  P  C  V  G  R  L  M  R  Q  *  D  I  S  S  C  I  A  T  L  L  G  S  C  G  R  F  S  F  I  S  E  H  I  L  V  Y  A  *  Q  D  *  *  D  S  I  Q  L  E  D  G  W  S  C  G  Y  K  Q  R  K  V  E  N  D  P  C  *  N  L  V  D  Y  M  E  G  E  K  R  E  I  F  *  E  L  E  Q  H  P  A  G  S  *  A  *  V  Y  F  V  V  L  L  L  V  Y  K  C  L  L  Q  *  D  *  V  N  H  R  Y  F  R  I  H  L  D  L  V  Q  F  F  G  *  I  I  L  S </second_frame>
            <third_frame>   S  A  T  Q  S  G  M  L  H  M  A  T  S  Q  *  S  S  F  D  I  G  *  C  G  Q  E  R  N  L  S  M  Q  *  M  F  L  V  W  E  G  *  *  D  S  E  T  Y  L  L  A  L  Q  L  Y  W  A  A  V  A  D  F  P  L  S  Q  S  I  S  W  C  M  P  S  K  I  D  E  T  L  F  S  W  K  M  A  G  V  A  A  T  N  R  E  R  W  R  M  I  P  A  R  I  W  W  T  I  W  R  E  R  N  E  R  Y  F  E  N  W  N  N  T  L  Q  E  V  K  L  K  C  I  L  L  F  C  F  W  C  T  N  V  Y  S  N  E  T  E  S  I  I  D  I  L  G  S  I  *  I  W  F  S  F  L  D  R  L  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8244" stop="7903"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSETYLLALQLYWAAVADFPLSQSISWCMPSKIDETLFSWKMAGVAATNRERWRMIPARIWWTIWRERNERYFENWNNTLQEVKLKCILLFCFWCTNVYSNETESIIDILGSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8372" stop="8079"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVPHKVACFTWLLANEAVLTLDNVAKRGISLCNRCSLCGKANETVRHIFLHCNFTGQLWQIFLYLRAYLGVCLARLMRLYSVGRWLELRLQTEKGGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="19553" PGL_stop="21584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19553" e_stop="19628"/>
            <exon e_start="19739" e_stop="19834"/>
            <exon e_start="20947" e_stop="21173"/>
            <exon e_start="21276" e_stop="21584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19553" e_stop="19628" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19739" e_stop="19834" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20947" e_stop="21173" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="21276" e_stop="21584" e_length="309"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19553" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19557" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19572" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19578" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19580" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19581" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19584" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19584" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19585" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19586" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19590" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19592" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19594" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19610" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19623" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19779" stop="19834"/>
              <exon start="20947" stop="21062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19797" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21034" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCTCTTTCTCTGTACATTCGGAAGCAGCAGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA : ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTTATTTGCTTCTTTTCTTGTTGATGTATTCGTTGTCAGTTCAACTCGTCAAAACCTGCAATTCTCAATTTATAATACCAAGTTAACTTGGAATTTCAATCCAACTGGAAAA</gDNA_template>
            <first_frame> R  L  F  L  C  T  F  G  S  S  S  N  S  S  P  T  P  L  K  L  T  N  L  T  Q   : N  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M  G  F  S  L  F  D  *  R  N  V  *  L  V  S  V  *  M  V  L  F  P  S  S  R  *  V  Y  S  G  N  L  F  V  N  L  L  F  S  L  L  V  *  L  M  H  L  Y  F  A  W  *  T  S  *  V  N  W  K  L  L  V  L  L  D  L  F  A  S  F  L  V  D  V  F  V  V  S  S  T  R  Q  N  L  Q  F  S  I  Y  N  T  K  L  T  W  N  F  N  P  T  G  K </first_frame>
            <second_frame>  A  S  F  S  V  H  S  E  A  A  A  T  A  A  L  R  H  *  S  L  Q  I  S  H  K  :  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  A  S  V  S  S  I  R  G  M  F  N  W  F  L  Y  E  W  S  C  S  P  V  P  V  E  F  I  L  G  I  F  L  S  T  Y  C  F  R  F  *  F  S  *  C  T  Y  I  L  L  G  K  H  L  E  S  I  G  N  Y  *  Y  C  W  I  Y  L  L  L  F  L  L  M  Y  S  L  S  V  Q  L  V  K  T  C  N  S  Q  F  I  I  P  S  *  L  G  I  S  I  Q  L  E   </second_frame>
            <third_frame>   P  L  S  L  Y  I  R  K  Q  Q  Q  Q  Q  P  Y  A  I  K  A  Y  K  S  H  T  K :   *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G  L  Q  S  L  R  L  E  E  C  L  T  G  F  C  M  N  G  L  V  P  Q  F  P  L  S  L  F  W  E  S  F  C  Q  L  T  V  F  A  F  S  L  V  N  A  P  I  F  C  L  V  N  I  L  S  Q  L  E  I  T  S  I  V  G  F  I  C  F  F  S  C  *  C  I  R  C  Q  F  N  S  S  K  P  A  I  L  N  L  *  Y  Q  V  N  L  E  F  Q  S  N  W  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19553" stop="19628"/>
                    <exon start="19739" stop="19834"/>
                    <exon start="20947" stop="21173"/>
                    <exon start="21276" stop="21302"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLFLCTFGSSSNSSPTPLKLTNLTQNKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21278" stop="21496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGLQSLRLEECLTGFCMNGLVPQFPLSLFWESFCQLTVFAFSLVNAPIFCLVNILSQLEITSIVGFICFFSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19594" e_stop="19628"/>
            <exon e_start="19721" e_stop="19834"/>
            <exon e_start="20947" e_stop="21173"/>
            <exon e_start="21276" e_stop="21475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.246" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19594" e_stop="19628" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.246">
            <gDNA_intron_boundary i_start="19629" i_stop="19720" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19721" e_stop="19834" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20947" e_stop="21173" e_length="227"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="21174" i_stop="21275" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21276" e_stop="21475" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19594" stop="19628"/>
              <exon start="19721" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19779" stop="19834"/>
              <exon start="20947" stop="21062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19797" stop="19834"/>
              <exon start="20947" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21034" stop="21173"/>
              <exon start="21276" stop="21475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTACGCCATTAAAGCTTACAAATCTCACACAAA : TTTTGTGTGTATTTGTAGATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGAT : GACATGGGCTTCAGTCTCTTCGATTAGAGGAATGTTTAACTGGTTTCTGTATGAATGGTCTTGTTCCCCAGTTCCCGTTGAGTTTATTCTGGGAATCTTTTTGTCAACTTACTGTTTTCGCTTTTAGTTTAGTTAATGCACCTATATTTTGCTTGGTAAACATCTTGAGTCAATTGGAAATTACTAGTATTGTTGGATTT</gDNA_template>
            <first_frame> P  Y  A  I  K  A  Y  K  S  H  T  N :   F  V  C  I  C  R  *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *   : *  H  G  L  Q  S  L  R  L  E  E  C  L  T  G  F  C  M  N  G  L  V  P  Q  F  P  L  S  L  F  W  E  S  F  C  Q  L  T  V  F  A  F  S  L  V  N  A  P  I  F  C  L  V  N  I  L  S  Q  L  E  I  T  S  I  V  G  F </first_frame>
            <second_frame>  P  T  P  L  K  L  T  N  L  T  Q   : I  L  C  V  F  V  D  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  :  D  M  G  F  S  L  F  D  *  R  N  V  *  L  V  S  V  *  M  V  L  F  P  S  S  R  *  V  Y  S  G  N  L  F  V  N  L  L  F  S  L  L  V  *  L  M  H  L  Y  F  A  W  *  T  S  *  V  N  W  K  L  L  V  L  L  D   </second_frame>
            <third_frame>   L  R  H  *  S  L  Q  I  S  H  K  :  F  C  V  Y  L  *  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M :   T  W  A  S  V  S  S  I  R  G  M  F  N  W  F  L  Y  E  W  S  C  S  P  V  P  V  E  F  I  L  G  I  F  L  S  T  Y  C  F  R  F  *  F  S  *  C  T  Y  I  L  L  G  K  H  L  E  S  I  G  N  Y  *  Y  C  W  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19595" stop="19628"/>
                    <exon start="19721" stop="19834"/>
                    <exon start="20947" stop="21173"/>
                    <exon start="21276" stop="21302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTPLKLTNLTQILCVFVDKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21278" stop="21475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HGLQSLRLEECLTGFCMNGLVPQFPLSLFWESFCQLTVFAFSLVNAPIFCLVNILSQLEITSIVGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19583" e_stop="19628"/>
            <exon e_start="19739" e_stop="19834"/>
            <exon e_start="20947" e_stop="21178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19583" e_stop="19628" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19629" i_stop="19738" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19739" e_stop="19834" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19835" i_stop="20946" i_length="1112"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="20947" e_stop="21178" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294358" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19583" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19628"/>
              <exon start="19739" stop="19834"/>
              <exon start="20947" stop="21091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19779" stop="19834"/>
              <exon start="20947" stop="21062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAACAGCAGCCCTACGCCATTAAAGCTTACAAATCTCACACAAA : ATAAGAAAATGAAGGTTATCGCTTCTTACTTGTTAGCTGTGTTGGGTGGCAACACCTCCCCATCTGCTGCAGATTTGAAGAAGATCCTTGCTTCTG : TTGGAGCTGAAGCTGATGATGATAGGATTGAACTCCTCTTGTCCCAAGTAAAGGGCAAGGACATCACTGAGCTGATTGCTGCTGGCAGGGAGAAGTTGGCTTCAGTACCCTCTGGTGGCGGTGGTGGAGTTGCAGTAGCTGTATCTGGTGGTGGTGGTGCTGCAGCACCAGCTGCCGAGGAGAAGAAAGAGGAAAAGAAGGTGGAAGAGAAAGAGGAATCTGATGATGTAAG</gDNA_template>
            <first_frame> S  N  S  S  P  T  P  L  K  L  T  N  L  T  Q   : N  K  K  M  K  V  I  A  S  Y  L  L  A  V  L  G  G  N  T  S  P  S  A  A  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  E  L  L  L  S  Q  V  K  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  S  G  G  G  G  G  V  A  V  A  V  S  G  G  G  G  A  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  V   </first_frame>
            <second_frame>  A  T  A  A  L  R  H  *  S  L  Q  I  S  H  K  :  I  R  K  *  R  L  S  L  L  T  C  *  L  C  W  V  A  T  P  P  H  L  L  Q  I  *  R  R  S  L  L  L  :  L  E  L  K  L  M  M  I  G  L  N  S  S  C  P  K  *  R  A  R  T  S  L  S  *  L  L  L  A  G  R  S  W  L  Q  Y  P  L  V  A  V  V  E  L  Q  *  L  Y  L  V  V  V  V  L  Q  H  Q  L  P  R  R  R  K  R  K  R  R  W  K  R  K  R  N  L  M  M  *  </second_frame>
            <third_frame>   Q  Q  Q  P  Y  A  I  K  A  Y  K  S  H  T  K :   *  E  N  E  G  Y  R  F  L  L  V  S  C  V  G  W  Q  H  L  P  I  C  C  R  F  E  E  D  P  C  F  C :   W  S  *  S  *  *  *  *  D  *  T  P  L  V  P  S  K  G  Q  G  H  H  *  A  D  C  C  W  Q  G  E  V  G  F  S  T  L  W  W  R  W  W  S  C  S  S  C  I  W  W  W  W  C  C  S  T  S  C  R  G  E  E  R  G  K  E  G  G  R  E  R  G  I  *  *  C  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19583" stop="19628"/>
                    <exon start="19739" stop="19834"/>
                    <exon start="20947" stop="21176"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNSSPTPLKLTNLTQNKKMKVIASYLLAVLGGNTSPSAADLKKILASVGAEADDDRIELLLSQVKGKDITELIAAGREKLASVPSGGGGGVAVAVSGGGGAAAPAAEEKKEEKKVEEKEESDDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="29482" PGL_stop="21679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29482" e_stop="29255"/>
            <exon e_start="27881" e_stop="27796"/>
            <exon e_start="27729" e_stop="27641"/>
            <exon e_start="27538" e_stop="27299"/>
            <exon e_start="27160" e_stop="27039"/>
            <exon e_start="26540" e_stop="26465"/>
            <exon e_start="26274" e_stop="26167"/>
            <exon e_start="26052" e_stop="25876"/>
            <exon e_start="25737" e_stop="25520"/>
            <exon e_start="25048" e_stop="24916"/>
            <exon e_start="24031" e_stop="23808"/>
            <exon e_start="22753" e_stop="22600"/>
            <exon e_start="22344" e_stop="21679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.777" e_score="0.975"/>
          <exon-intron don_prob="0.979" acc_prob="0.974" e_score="0.984"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29482" e_stop="29255" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29254" i_stop="27882" i_length="1373"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27881" e_stop="27796" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27795" i_stop="27730" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27729" e_stop="27641" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.864" acc_prob="0.926">
            <gDNA_intron_boundary i_start="27640" i_stop="27539" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="27538" e_stop="27299" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.777">
            <gDNA_intron_boundary i_start="27298" i_stop="27161" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="27160" e_stop="27039" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27038" i_stop="26541" i_length="498"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26540" e_stop="26465" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="26464" i_stop="26275" i_length="190"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26274" e_stop="26167" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26166" i_stop="26053" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26052" e_stop="25876" e_length="177"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="0.976">
            <gDNA_intron_boundary i_start="25875" i_stop="25738" i_length="138"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25737" e_stop="25520" e_length="218"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="25519" i_stop="25049" i_length="471"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25048" e_stop="24916" e_length="133"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="24915" i_stop="24032" i_length="884"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24031" e_stop="23808" e_length="224"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="23807" i_stop="22754" i_length="1054"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="22753" e_stop="22600" e_length="154"/>
          </exon>
          <intron i_serial="12" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="22599" i_stop="22345" i_length="255"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="22344" e_stop="21679" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29255"/>
              <exon start="27881" stop="27796"/>
              <exon start="27729" stop="27641"/>
              <exon start="27538" stop="27338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29452" stop="29255"/>
              <exon start="27881" stop="27796"/>
              <exon start="27729" stop="27641"/>
              <exon start="27538" stop="27410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27836" stop="27796"/>
              <exon start="27729" stop="27641"/>
              <exon start="27538" stop="27299"/>
              <exon start="27160" stop="27039"/>
              <exon start="26540" stop="26465"/>
              <exon start="26274" stop="26213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27118" stop="27039"/>
              <exon start="26540" stop="26465"/>
              <exon start="26274" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27073" stop="27039"/>
              <exon start="26540" stop="26465"/>
              <exon start="26274" stop="26167"/>
              <exon start="26052" stop="25892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26215" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25520"/>
              <exon start="25048" stop="24916"/>
              <exon start="24031" stop="23912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26215" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25520"/>
              <exon start="25048" stop="24952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26200" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25520"/>
              <exon start="25048" stop="24916"/>
              <exon start="24031" stop="23887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26199" stop="26167"/>
              <exon start="26052" stop="25876"/>
              <exon start="25737" stop="25724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25687" stop="25520"/>
              <exon start="25048" stop="24916"/>
              <exon start="24031" stop="23808"/>
              <exon start="22753" stop="22600"/>
              <exon start="22344" stop="22340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25010" stop="24916"/>
              <exon start="24031" stop="23808"/>
              <exon start="22753" stop="22690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22665" stop="22600"/>
              <exon start="22344" stop="21702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22274" stop="21688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22274" stop="21688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22273" stop="21691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22190" stop="21679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACTTAGAAAGCAAATTTCTGCAGCAAATCGGAAGTGAGATTGGAAATCCGGCGACGGCGACGGGAGAGATGGAGGAAGCAGATCAGAATGAGAACGGAAATCCGGCGGCGGCGGTGGTGGAGGAAACCGAAACGGTTATTGGACCGGGTCCAGCTCCTCGTGCTCGTGCTAAACGTCCTCTTCAATTTGAGCAAGCTTATCTCGATTCACTTCCGTCTGCTAACTT : GTATGAAAAAAGTTACATGCACCGAGACGTGGTTACTCATGTTGCTGTTTCAGCAGCAGATTTTTTCATTAGTGGGAGTACTGATG : GTCACCTGAAATTTTGGAAGAAAAAGCCTACTGGTATCGAGTTTGCAAAACATTTTAGATCTCATCTTGGACCAATTGAAGGCCTTGCA : GTTAGCATTGATGGTATGCTTTGCTGTACAATTTCAAGTGATAAGTCTCTGAAAATATATGACGTAGTGAATTATGACATGATGTCCATGATTCGTCTTCCCTTCATACCTGGATGTGTTGAATGGGTATATAAACAAGGGGATGTCAAGGCTAAACTTGCCGTTAGTGATCGTAACTCCTCATTGGTGCATATATATGATGCAAGAGCTGGTACAAATGATCCTATAATATCTAAAGAG : GTACAGTTGTGCCCCATCAAAGTCATGAAATACAATCATGTCTTTGATACTGTGATATCAGCAGATGACAAAGGGATCATTGAGTACTGGAGTCCTGCCACACTTAAGTTCCCAGAGAATCT : GGTGAATTTTAGATTGAAGAGTGATACTGATCTCTTTGAAATTGTGAAATGCAAAACTGCTGTTTCTTCTATAGAG : GTAAGCCCTGATGGTAAACAGTTCTCGGTAACTTCACCAGATCGCAGGATTCGTATATTTTGGTTCAAGACAGGTAAACTAAGACGTGTGTATGATGAATCTCTTGAG : GTGGCACAAGATCTCCAGAGGAGTGATGTTCCTTTATACCGACTTGAAGCTATTGACTTTGGACGAAGAATGGCTGTGGAAAAAGAAATTGAGAAAACAGAATGTGTACCACAACCTAATGCTGTTTTTGATGAAAGTTCCAATTTCATTATATATGCAACTCTCCTAGGAATTAAA : ATTATAAATCTACACACTAACAAGGTATCTCGTATCCTGGGGAAGGTGGAGAGCAATGATAGATTTTTGAGAATTGCTTTGTATCAAGGTGATAGAAGTAGTAAAAAAGTAAGAAAAATCCCTGCTGCGGCAGCAAATGCAAATGAAAGCAAGGAGCCCTTGATAGATCCCAATCTACTTTGCTGTGCTTTCAAGAAACATAGAATCTATTTGTTCAG : TCAGAGAGAACCTGAGGAACCTGATGATCCTACCAAGGGAAGAGATGTCTTCAATGAAAAGCCACCTCCTGATGAACTTTTGGCCGTATCTGACATTGGGAAGTCCGTTACTACATCCCTTCCAGATAATGTG : ATCATGCATACCAGTATGGGTGACATTCATATGAAGCTATACCCTGAAGAGTGTCCAAAAACAGTGGAGAACTTTACAACACACTGCAGGAATGGATACTATGATAATTTGATATTTCATCGGGTCATCAGAGGCTTTATGGTTCAGACAGGAGATCCATTAGGAGATGGCACGGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAAGATGAGTTCCATAAAAG : TCTGCGACATGATAGACCCTTCACTGTCTCGATGGCTAATGCTGGGCCAAACACAAATGGCTCTCAATTCTTCATAACAACTGTTGCCACTCCATGGTTGGACAATAAGCACACAGTTTTTGGCAGAGTGGTGAAAGGAATGGATGTTGTACAG : TCTTTAGAGAAAGTGAAGACCGACAAAGGTGACAAGCCATACCAGGATGTAAAAATATTGAATGTGACTGTTCCAAAGTCTTAAATGGGTTCTTGTTGTGGCTATGCTCCTTATTGGATAGTTTACATCTGCTTTATTCTGGAGAACTGGAAGGAGTACTACGACTTTACGTTGGAAAGTATTGCTATCCTCGTTGGACCCTGATCTGACATGTATCTGTGTAATCTATGACTTCTGGTACTTTTCTCAAAACCTGCTATACAACATAGATTCCTTCAGTTTTAAGAAACTTTTCGTGCCTCCGGGAAGTAGAATTCCACTTGCTTCACTCAAGTTGAAAGGATATTAGTGAATGGGAGTTGCTGGCTGATCTGGTATTAGGATTAGCTCATTGCCACAAGGAGTGTACGATCAGCGTTTTCCACTCAAGATTCATTAGTGAGACAGAACGGCCTAGCTTATTATCAATGTTCATGTTGTGGACAGTAATTTATAGAGTTAGAGACCTAGATGTTGTTTTCGCGGTTTCAAATGAACTACAACAAGTGTAGACCTTTTTGACATCTTTTTAAGTCCTAGCTTCATATATTTGAATTGTAGCTGCAGTTACTGTACAAGACCCTATTATGAATTCAAATTATCAGTAAGCTTCATTTCACTTCTCAC</gDNA_template>
            <first_frame> S  L  R  K  Q  I  S  A  A  N  R  K  *  D  W  K  S  G  D  G  D  G  R  D  G  G  S  R  S  E  *  E  R  K  S  G  G  G  G  G  G  G  N  R  N  G  Y  W  T  G  S  S  S  S  C  S  C  *  T  S  S  S  I  *  A  S  L  S  R  F  T  S  V  C  *  L  :  V  *  K  K  L  H  A  P  R  R  G  Y  S  C  C  C  F  S  S  R  F  F  H  *  W  E  Y  *  W :   S  P  E  I  L  E  E  K  A  Y  W  Y  R  V  C  K  T  F  *  I  S  S  W  T  N  *  R  P  C   : S  *  H  *  W  Y  A  L  L  Y  N  F  K  *  *  V  S  E  N  I  *  R  S  E  L  *  H  D  V  H  D  S  S  S  L  H  T  W  M  C  *  M  G  I  *  T  R  G  C  Q  G  *  T  C  R  *  *  S  *  L  L  I  G  A  Y  I  *  C  K  S  W  Y  K  *  S  Y  N  I  *  R   : G  T  V  V  P  H  Q  S  H  E  I  Q  S  C  L  *  Y  C  D  I  S  R  *  Q  R  D  H  *  V  L  E  S  C  H  T  *  V  P  R  E  S  :  G  E  F  *  I  E  E  *  Y  *  S  L  *  N  C  E  M  Q  N  C  C  F  F  Y  R   : G  K  P  *  W  *  T  V  L  G  N  F  T  R  S  Q  D  S  Y  I  L  V  Q  D  R  *  T  K  T  C  V  *  *  I  S  *   : G  G  T  R  S  P  E  E  *  C  S  F  I  P  T  *  S  Y  *  L  W  T  K  N  G  C  G  K  R  N  *  E  N  R  M  C  T  T  T  *  C  C  F  *  *  K  F  Q  F  H  Y  I  C  N  S  P  R  N  *   : N  Y  K  S  T  H  *  Q  G  I  S  Y  P  G  E  G  G  E  Q  *  *  I  F  E  N  C  F  V  S  R  *  *  K  *  *  K  S  K  K  N  P  C  C  G  S  K  C  K  *  K  Q  G  A  L  D  R  S  Q  S  T  L  L  C  F  Q  E  T  *  N  L  F  V  Q  :  S  E  R  T  *  G  T  *  *  S  Y  Q  G  K  R  C  L  Q  *  K  A  T  S  *  *  T  F  G  R  I  *  H  W  E  V  R  Y  Y  I  P  S  R  *  C   : D  H  A  Y  Q  Y  G  *  H  S  Y  E  A  I  P  *  R  V  S  K  N  S  G  E  L  Y  N  T  L  Q  E  W  I  L  *  *  F  D  I  S  S  G  H  Q  R  L  Y  G  S  D  R  R  S  I  R  R  W  H  G  W  P  I  Y  L  G  K  G  V  *  R  *  V  P  *  K  :  S  A  T  *  *  T  L  H  C  L  D  G  *  C  W  A  K  H  K  W  L  S  I  L  H  N  N  C  C  H  S  M  V  G  Q  *  A  H  S  F  W  Q  S  G  E  R  N  G  C  C  T   : V  F  R  E  S  E  D  R  Q  R  *  Q  A  I  P  G  C  K  N  I  E  C  D  C  S  K  V  L  N  G  F  L  L  W  L  C  S  L  L  D  S  L  H  L  L  Y  S  G  E  L  E  G  V  L  R  L  Y  V  G  K  Y  C  Y  P  R  W  T  L  I  *  H  V  S  V  *  S  M  T  S  G  T  F  L  K  T  C  Y  T  T  *  I  P  S  V  L  R  N  F  S  C  L  R  E  V  E  F  H  L  L  H  S  S  *  K  D  I  S  E  W  E  L  L  A  D  L  V  L  G  L  A  H  C  H  K  E  C  T  I  S  V  F  H  S  R  F  I  S  E  T  E  R  P  S  L  L  S  M  F  M  L  W  T  V  I  Y  R  V  R  D  L  D  V  V  F  A  V  S  N  E  L  Q  Q  V  *  T  F  L  T  S  F  *  V  L  A  S  Y  I  *  I  V  A  A  V  T  V  Q  D  P  I  M  N  S  N  Y  Q  *  A  S  F  H  F  S  </first_frame>
            <second_frame>  H  L  E  S  K  F  L  Q  Q  I  G  S  E  I  G  N  P  A  T  A  T  G  E  M  E  E  A  D  Q  N  E  N  G  N  P  A  A  A  V  V  E  E  T  E  T  V  I  G  P  G  P  A  P  R  A  R  A  K  R  P  L  Q  F  E  Q  A  Y  L  D  S  L  P  S  A  N  L :   Y  E  K  S  Y  M  H  R  D  V  V  T  H  V  A  V  S  A  A  D  F  F  I  S  G  S  T  D   : G  H  L  K  F  W  K  K  K  P  T  G  I  E  F  A  K  H  F  R  S  H  L  G  P  I  E  G  L  A  :  V  S  I  D  G  M  L  C  C  T  I  S  S  D  K  S  L  K  I  Y  D  V  V  N  Y  D  M  M  S  M  I  R  L  P  F  I  P  G  C  V  E  W  V  Y  K  Q  G  D  V  K  A  K  L  A  V  S  D  R  N  S  S  L  V  H  I  Y  D  A  R  A  G  T  N  D  P  I  I  S  K  E  :  V  Q  L  C  P  I  K  V  M  K  Y  N  H  V  F  D  T  V  I  S  A  D  D  K  G  I  I  E  Y  W  S  P  A  T  L  K  F  P  E  N  L :   V  N  F  R  L  K  S  D  T  D  L  F  E  I  V  K  C  K  T  A  V  S  S  I  E  :  V  S  P  D  G  K  Q  F  S  V  T  S  P  D  R  R  I  R  I  F  W  F  K  T  G  K  L  R  R  V  Y  D  E  S  L  E  :  V  A  Q  D  L  Q  R  S  D  V  P  L  Y  R  L  E  A  I  D  F  G  R  R  M  A  V  E  K  E  I  E  K  T  E  C  V  P  Q  P  N  A  V  F  D  E  S  S  N  F  I  I  Y  A  T  L  L  G  I  K  :  I  I  N  L  H  T  N  K  V  S  R  I  L  G  K  V  E  S  N  D  R  F  L  R  I  A  L  Y  Q  G  D  R  S  S  K  K  V  R  K  I  P  A  A  A  A  N  A  N  E  S  K  E  P  L  I  D  P  N  L  L  C  C  A  F  K  K  H  R  I  Y  L  F  S :   Q  R  E  P  E  E  P  D  D  P  T  K  G  R  D  V  F  N  E  K  P  P  P  D  E  L  L  A  V  S  D  I  G  K  S  V  T  T  S  L  P  D  N  V  :  I  M  H  T  S  M  G  D  I  H  M  K  L  Y  P  E  E  C  P  K  T  V  E  N  F  T  T  H  C  R  N  G  Y  Y  D  N  L  I  F  H  R  V  I  R  G  F  M  V  Q  T  G  D  P  L  G  D  G  T  G  G  Q  S  I  W  G  R  E  F  E  D  E  F  H  K  S :   L  R  H  D  R  P  F  T  V  S  M  A  N  A  G  P  N  T  N  G  S  Q  F  F  I  T  T  V  A  T  P  W  L  D  N  K  H  T  V  F  G  R  V  V  K  G  M  D  V  V  Q  :  S  L  E  K  V  K  T  D  K  G  D  K  P  Y  Q  D  V  K  I  L  N  V  T  V  P  K  S  *  M  G  S  C  C  G  Y  A  P  Y  W  I  V  Y  I  C  F  I  L  E  N  W  K  E  Y  Y  D  F  T  L  E  S  I  A  I  L  V  G  P  *  S  D  M  Y  L  C  N  L  *  L  L  V  L  F  S  K  P  A  I  Q  H  R  F  L  Q  F  *  E  T  F  R  A  S  G  K  *  N  S  T  C  F  T  Q  V  E  R  I  L  V  N  G  S  C  W  L  I  W  Y  *  D  *  L  I  A  T  R  S  V  R  S  A  F  S  T  Q  D  S  L  V  R  Q  N  G  L  A  Y  Y  Q  C  S  C  C  G  Q  *  F  I  E  L  E  T  *  M  L  F  S  R  F  Q  M  N  Y  N  K  C  R  P  F  *  H  L  F  K  S  *  L  H  I  F  E  L  *  L  Q  L  L  Y  K  T  L  L  *  I  Q  I  I  S  K  L  H  F  T  S  H </second_frame>
            <third_frame>   T  *  K  A  N  F  C  S  K  S  E  V  R  L  E  I  R  R  R  R  R  E  R  W  R  K  Q  I  R  M  R  T  E  I  R  R  R  R  W  W  R  K  P  K  R  L  L  D  R  V  Q  L  L  V  L  V  L  N  V  L  F  N  L  S  K  L  I  S  I  H  F  R  L  L  T   : C  M  K  K  V  T  C  T  E  T  W  L  L  M  L  L  F  Q  Q  Q  I  F  S  L  V  G  V  L  M  :  V  T  *  N  F  G  R  K  S  L  L  V  S  S  L  Q  N  I  L  D  L  I  L  D  Q  L  K  A  L  Q :   L  A  L  M  V  C  F  A  V  Q  F  Q  V  I  S  L  *  K  Y  M  T  *  *  I  M  T  *  C  P  *  F  V  F  P  S  Y  L  D  V  L  N  G  Y  I  N  K  G  M  S  R  L  N  L  P  L  V  I  V  T  P  H  W  C  I  Y  M  M  Q  E  L  V  Q  M  I  L  *  Y  L  K  R :   Y  S  C  A  P  S  K  S  *  N  T  I  M  S  L  I  L  *  Y  Q  Q  M  T  K  G  S  L  S  T  G  V  L  P  H  L  S  S  Q  R  I   : W  *  I  L  D  *  R  V  I  L  I  S  L  K  L  *  N  A  K  L  L  F  L  L  *  R :   *  A  L  M  V  N  S  S  R  *  L  H  Q  I  A  G  F  V  Y  F  G  S  R  Q  V  N  *  D  V  C  M  M  N  L  L  R :   W  H  K  I  S  R  G  V  M  F  L  Y  T  D  L  K  L  L  T  L  D  E  E  W  L  W  K  K  K  L  R  K  Q  N  V  Y  H  N  L  M  L  F  L  M  K  V  P  I  S  L  Y  M  Q  L  S  *  E  L  K :   L  *  I  Y  T  L  T  R  Y  L  V  S  W  G  R  W  R  A  M  I  D  F  *  E  L  L  C  I  K  V  I  E  V  V  K  K  *  E  K  S  L  L  R  Q  Q  M  Q  M  K  A  R  S  P  *  *  I  P  I  Y  F  A  V  L  S  R  N  I  E  S  I  C  S   : V  R  E  N  L  R  N  L  M  I  L  P  R  E  E  M  S  S  M  K  S  H  L  L  M  N  F  W  P  Y  L  T  L  G  S  P  L  L  H  P  F  Q  I  M  * :   S  C  I  P  V  W  V  T  F  I  *  S  Y  T  L  K  S  V  Q  K  Q  W  R  T  L  Q  H  T  A  G  M  D  T  M  I  I  *  Y  F  I  G  S  S  E  A  L  W  F  R  Q  E  I  H  *  E  M  A  R  V  A  N  L  F  G  E  G  S  L  K  M  S  S  I  K   : V  C  D  M  I  D  P  S  L  S  R  W  L  M  L  G  Q  T  Q  M  A  L  N  S  S  *  Q  L  L  P  L  H  G  W  T  I  S  T  Q  F  L  A  E  W  *  K  E  W  M  L  Y  S :   L  *  R  K  *  R  P  T  K  V  T  S  H  T  R  M  *  K  Y  *  M  *  L  F  Q  S  L  K  W  V  L  V  V  A  M  L  L  I  G  *  F  T  S  A  L  F  W  R  T  G  R  S  T  T  T  L  R  W  K  V  L  L  S  S  L  D  P  D  L  T  C  I  C  V  I  Y  D  F  W  Y  F  S  Q  N  L  L  Y  N  I  D  S  F  S  F  K  K  L  F  V  P  P  G  S  R  I  P  L  A  S  L  K  L  K  G  Y  *  *  M  G  V  A  G  *  S  G  I  R  I  S  S  L  P  Q  G  V  Y  D  Q  R  F  P  L  K  I  H  *  *  D  R  T  A  *  L  I  I  N  V  H  V  V  D  S  N  L  *  S  *  R  P  R  C  C  F  R  G  F  K  *  T  T  T  S  V  D  L  F  D  I  F  L  S  P  S  F  I  Y  L  N  C  S  C  S  Y  C  T  R  P  Y  Y  E  F  K  L  S  V  S  F  I  S  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29481" stop="29255"/>
                    <exon start="27881" stop="27796"/>
                    <exon start="27729" stop="27641"/>
                    <exon start="27538" stop="27299"/>
                    <exon start="27160" stop="27039"/>
                    <exon start="26540" stop="26465"/>
                    <exon start="26274" stop="26167"/>
                    <exon start="26052" stop="25876"/>
                    <exon start="25737" stop="25520"/>
                    <exon start="25048" stop="24916"/>
                    <exon start="24031" stop="23808"/>
                    <exon start="22753" stop="22600"/>
                    <exon start="22344" stop="22261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1935</number_coding_nucleotides>
                  <number_encoded_amino_acids>645</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLESKFLQQIGSEIGNPATATGEMEEADQNENGNPAAAVVEETETVIGPGPAPRARAKRPLQFEQAYLDSLPSANLYEKSYMHRDVVTHVAVSAADFFISGSTDGHLKFWKKKPTGIEFAKHFRSHLGPIEGLAVSIDGMLCCTISSDKSLKIYDVVNYDMMSMIRLPFIPGCVEWVYKQGDVKAKLAVSDRNSSLVHIYDARAGTNDPIISKEVQLCPIKVMKYNHVFDTVISADDKGIIEYWSPATLKFPENLVNFRLKSDTDLFEIVKCKTAVSSIEVSPDGKQFSVTSPDRRIRIFWFKTGKLRRVYDESLEVAQDLQRSDVPLYRLEAIDFGRRMAVEKEIEKTECVPQPNAVFDESSNFIIYATLLGIKIINLHTNKVSRILGKVESNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPLIDPNLLCCAFKKHRIYLFSQREPEEPDDPTKGRDVFNEKPPPDELLAVSDIGKSVTTSLPDNVIMHTSMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIRGFMVQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQSLEKVKTDKGDKPYQDVKILNVTVPKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22223" stop="21996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTSALFWRTGRSTTTLRWKVLLSSLDPDLTCICVIYDFWYFSQNLLYNIDSFSFKKLFVPPGSRIPLASLKLKGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22006" stop="21794"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDISEWELLADLVLGLAHCHKECTISVFHSRFISETERPSLLSMFMLWTVIYRVRDLDVVFAVSNELQQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37148" PGL_stop="36469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37148" e_stop="36469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37148" e_stop="36469" e_length="680"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37148" stop="36469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37148" stop="36469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37147" stop="36641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37144" stop="36670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37083" stop="36474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36795" stop="36492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGTAAAGAATTTCTCTCTGATGGAAGTTGCCCTGATACCTCAGTTGAATACTACTAGCCTATATCCCTCAGACTCTTCAGAAATATTGTTGCACTCGTATCAGATCCTACTACTAACTAGTGTGAATAAAGACTCAAAAAAAGTCAAAAATTTTGGACCAGAAAAGAATGGAAGAAGAAGAAAGAAGTGATTTGTGGTGGACTTTTGTTGGATCTTAATGAATATTGACCCACCAATATGAATATGAGGCTATATGAATACAACAAAGACATTAGTTTTTGTTGTTGTTTGCTAGCCAATGCTCTATTGTACATTGCTATTATTATAGGTGGACAAAGAAAGGAAGGTTCATTTTCTAAATCTTTTATAAGTCAATGCCTTTGTCTAAAACATTGGATCCTGACAAAATACATGTAGACAATTGTTACACAAGCAAAGGGCCTGGTTGTGTGAAGGATTTGGTTGGGTGGTGGAAGGTCAAGAATATGGGTCAGCATCATGTTTTTGCTAATCTTGTTCTTTTCCTTGTGGAAAAGCATGATGTTTCCATGTGATTTGTTTAATTATTAGGATCTTGTAAGGTTGTAGGGTAGTAGCTAGTCATGGGTGGGTGCCTTGTGAATTTCATAAATTACATAAAAATATTTTCCACATAAATAATTATCATGGTATTTATTA</gDNA_template>
            <first_frame> S  V  K  N  F  S  L  M  E  V  A  L  I  P  Q  L  N  T  T  S  L  Y  P  S  D  S  S  E  I  L  L  H  S  Y  Q  I  L  L  L  T  S  V  N  K  D  S  K  K  V  K  N  F  G  P  E  K  N  G  R  R  R  K  K  *  F  V  V  D  F  C  W  I  L  M  N  I  D  P  P  I  *  I  *  G  Y  M  N  T  T  K  T  L  V  F  V  V  V  C  *  P  M  L  Y  C  T  L  L  L  L  *  V  D  K  E  R  K  V  H  F  L  N  L  L  *  V  N  A  F  V  *  N  I  G  S  *  Q  N  T  C  R  Q  L  L  H  K  Q  R  A  W  L  C  E  G  F  G  W  V  V  E  G  Q  E  Y  G  S  A  S  C  F  C  *  S  C  S  F  P  C  G  K  A  *  C  F  H  V  I  C  L  I  I  R  I  L  *  G  C  R  V  V  A  S  H  G  W  V  P  C  E  F  H  K  L  H  K  N  I  F  H  I  N  N  Y  H  G  I  Y   </first_frame>
            <second_frame>  Q  *  R  I  S  L  *  W  K  L  P  *  Y  L  S  *  I  L  L  A  Y  I  P  Q  T  L  Q  K  Y  C  C  T  R  I  R  S  Y  Y  *  L  V  *  I  K  T  Q  K  K  S  K  I  L  D  Q  K  R  M  E  E  E  E  R  S  D  L  W  W  T  F  V  G  S  *  *  I  L  T  H  Q  Y  E  Y  E  A  I  *  I  Q  Q  R  H  *  F  L  L  L  F  A  S  Q  C  S  I  V  H  C  Y  Y  Y  R  W  T  K  K  G  R  F  I  F  *  I  F  Y  K  S  M  P  L  S  K  T  L  D  P  D  K  I  H  V  D  N  C  Y  T  S  K  G  P  G  C  V  K  D  L  V  G  W  W  K  V  K  N  M  G  Q  H  H  V  F  A  N  L  V  L  F  L  V  E  K  H  D  V  S  M  *  F  V  *  L  L  G  S  C  K  V  V  G  *  *  L  V  M  G  G  C  L  V  N  F  I  N  Y  I  K  I  F  S  T  *  I  I  I  M  V  F  I  </second_frame>
            <third_frame>   S  K  E  F  L  S  D  G  S  C  P  D  T  S  V  E  Y  Y  *  P  I  S  L  R  L  F  R  N  I  V  A  L  V  S  D  P  T  T  N  *  C  E  *  R  L  K  K  S  Q  K  F  W  T  R  K  E  W  K  K  K  K  E  V  I  C  G  G  L  L  L  D  L  N  E  Y  *  P  T  N  M  N  M  R  L  Y  E  Y  N  K  D  I  S  F  C  C  C  L  L  A  N  A  L  L  Y  I  A  I  I  I  G  G  Q  R  K  E  G  S  F  S  K  S  F  I  S  Q  C  L  C  L  K  H  W  I  L  T  K  Y  M  *  T  I  V  T  Q  A  K  G  L  V  V  *  R  I  W  L  G  G  G  R  S  R  I  W  V  S  I  M  F  L  L  I  L  F  F  S  L  W  K  S  M  M  F  P  C  D  L  F  N  Y  *  D  L  V  R  L  *  G  S  S  *  S  W  V  G  A  L  *  I  S  *  I  T  *  K  Y  F  P  H  K  *  L  S  W  Y  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36787" stop="36593"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYKSMPLSKTLDPDKIHVDNCYTSKGPGCVKDLVGWWKVKNMGQHHVFANLVLFLVEKHDVSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="42376" PGL_stop="37645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42376" e_stop="41743"/>
            <exon e_start="37891" e_stop="37645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="42376" e_stop="41743" e_length="634"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41742" i_stop="37892" i_length="3851"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37891" e_stop="37645" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42376" stop="41743"/>
              <exon start="37891" stop="37645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAGAAAAAAACTCGAGCCAAAAATGGAGCCATGGCTCGACGACTTAGTCGACGATCTTCAAAGCATCAGCTTCAACTCTACTACCACTACCGCAACTGATATTAACCGGTCGACTAGCTCCGGCTCCGAAGCCACATGGACGGCTACGGCTTCTTCTATCTCATCCAGCTCTCTTCACCACCATATCACTAAGCCACGCGCCGCTACTCCTTCCGGTGATCCTTACTGGGACGCCATTACACGGGGTATTTCAACTTCTACTTCGTCGGCAATTTCTCTAACTGATCTCCGATTTCTCCATCGATTAGGATCCGGCGATATAGGTTCCGTTTTTCTCGCGGAAATCAAAGCTGCTCCGGTAACGGAGATTTCGAAATCGACGGCGGTATCGGCGTACTTTGCAGCGAAAGTTATGGATAAGAAGGAACTTGCGAGCCGTAATAAGGAAGGAAGAGCGAGGACTGAACGGGAAATACTTGAAATGTTAGATCATCCTTTCCTTCCCACGCTTTATGCTTCTATTGATTCACCGAAATGGTCGTGTTTATTAACGGAGTTTTGCCCCGGCGGTGATTTACACGTACTCCGGCAACGTCAAACCGGCGAAACGCTTCCATGAATCCGCTGTCAG : GTTCTATGTGTCGGAGGTGGTGGTGGCGTTGGAGTACATTCACATGATGGGAATAGTTTACCGCGACTTGAAACCTGAAAATGTTTTGGTCCGATCAGATGGTCATATCATGCTCACGGACTTTGATCTCTCGTTAAAATGTGACACCTCTACATCAACACCAGCTCAAGTGATTTCAAGCCAAAATACACCTAATGGTGGACCTCAACAAAATGAGTACAAAATTGAACCACCAAAGTTCACAGCT</gDNA_template>
            <first_frame> Q  K  K  K  T  R  A  K  N  G  A  M  A  R  R  L  S  R  R  S  S  K  H  Q  L  Q  L  Y  Y  H  Y  R  N  *  Y  *  P  V  D  *  L  R  L  R  S  H  M  D  G  Y  G  F  F  Y  L  I  Q  L  S  S  P  P  Y  H  *  A  T  R  R  Y  S  F  R  *  S  L  L  G  R  H  Y  T  G  Y  F  N  F  Y  F  V  G  N  F  S  N  *  S  P  I  S  P  S  I  R  I  R  R  Y  R  F  R  F  S  R  G  N  Q  S  C  S  G  N  G  D  F  E  I  D  G  G  I  G  V  L  C  S  E  S  Y  G  *  E  G  T  C  E  P  *  *  G  R  K  S  E  D  *  T  G  N  T  *  N  V  R  S  S  F  P  S  H  A  L  C  F  Y  *  F  T  E  M  V  V  F  I  N  G  V  L  P  R  R  *  F  T  R  T  P  A  T  S  N  R  R  N  A  S  M  N  P  L  S   : G  S  M  C  R  R  W  W  W  R  W  S  T  F  T  *  W  E  *  F  T  A  T  *  N  L  K  M  F  W  S  D  Q  M  V  I  S  C  S  R  T  L  I  S  R  *  N  V  T  P  L  H  Q  H  Q  L  K  *  F  Q  A  K  I  H  L  M  V  D  L  N  K  M  S  T  K  L  N  H  Q  S  S  Q   </first_frame>
            <second_frame>  K  R  K  K  L  E  P  K  M  E  P  W  L  D  D  L  V  D  D  L  Q  S  I  S  F  N  S  T  T  T  T  A  T  D  I  N  R  S  T  S  S  G  S  E  A  T  W  T  A  T  A  S  S  I  S  S  S  S  L  H  H  H  I  T  K  P  R  A  A  T  P  S  G  D  P  Y  W  D  A  I  T  R  G  I  S  T  S  T  S  S  A  I  S  L  T  D  L  R  F  L  H  R  L  G  S  G  D  I  G  S  V  F  L  A  E  I  K  A  A  P  V  T  E  I  S  K  S  T  A  V  S  A  Y  F  A  A  K  V  M  D  K  K  E  L  A  S  R  N  K  E  G  R  A  R  T  E  R  E  I  L  E  M  L  D  H  P  F  L  P  T  L  Y  A  S  I  D  S  P  K  W  S  C  L  L  T  E  F  C  P  G  G  D  L  H  V  L  R  Q  R  Q  T  G  E  T  L  P  *  I  R  C  Q  :  V  L  C  V  G  G  G  G  G  V  G  V  H  S  H  D  G  N  S  L  P  R  L  E  T  *  K  C  F  G  P  I  R  W  S  Y  H  A  H  G  L  *  S  L  V  K  M  *  H  L  Y  I  N  T  S  S  S  D  F  K  P  K  Y  T  *  W  W  T  S  T  K  *  V  Q  N  *  T  T  K  V  H  S  </second_frame>
            <third_frame>   K  E  K  N  S  S  Q  K  W  S  H  G  S  T  T  *  S  T  I  F  K  A  S  A  S  T  L  L  P  L  P  Q  L  I  L  T  G  R  L  A  P  A  P  K  P  H  G  R  L  R  L  L  L  S  H  P  A  L  F  T  T  I  S  L  S  H  A  P  L  L  L  P  V  I  L  T  G  T  P  L  H  G  V  F  Q  L  L  L  R  R  Q  F  L  *  L  I  S  D  F  S  I  D  *  D  P  A  I  *  V  P  F  F  S  R  K  S  K  L  L  R  *  R  R  F  R  N  R  R  R  Y  R  R  T  L  Q  R  K  L  W  I  R  R  N  L  R  A  V  I  R  K  E  E  R  G  L  N  G  K  Y  L  K  C  *  I  I  L  S  F  P  R  F  M  L  L  L  I  H  R  N  G  R  V  Y  *  R  S  F  A  P  A  V  I  Y  T  Y  S  G  N  V  K  P  A  K  R  F  H  E  S  A  V  R :   F  Y  V  S  E  V  V  V  A  L  E  Y  I  H  M  M  G  I  V  Y  R  D  L  K  P  E  N  V  L  V  R  S  D  G  H  I  M  L  T  D  F  D  L  S  L  K  C  D  T  S  T  S  T  P  A  Q  V  I  S  S  Q  N  T  P  N  G  G  P  Q  Q  N  E  Y  K  I  E  P  P  K  F  T  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42375" stop="41755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKKLEPKMEPWLDDLVDDLQSISFNSTTTTATDINRSTSSGSEATWTATASSISSSSLHHHITKPRAATPSGDPYWDAITRGISTSTSSAISLTDLRFLHRLGSGDIGSVFLAEIKAAPVTEISKSTAVSAYFAAKVMDKKELASRNKEGRARTEREILEMLDHPFLPTLYASIDSPKWSCLLTEFCPGGDLHVLRQRQTGETLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="52822" PGL_stop="53175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52822" e_stop="53175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="52822" e_stop="53175" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52822" stop="53175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTAAAACCTGAGAATGTGTTGGTCCGAGAAGACGGTCATATCATGCTGTCTGATTTTGATTTATCTCTTAGGTGTGCTGTTAATCCTACCTTGGTGAAATCGTCTTCTCCCATCATTGAGCTTCCAAAAAAGTCTAGTCCGTGCTCAGCTAGCTGCATAGATCCCTTCTGCCTACATCCGTCGTGGCAAGTATCTTGCTTTGGCCCCAGGTTTCTATCTACAGAAGCAAAGACACGTAAAATAAAGGCTGACCTAGCTGCACAAGTCTCACCTTTAACACAGCTTGTTGTGGAGCCAACCAACGCTCGATCCAACTCATTTGTAGGAACCCACGAGTATCTAGCTCCGGAG</gDNA_template>
            <first_frame> D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  A  V  N  P  T  L  V  K  S  S  S  P  I  I  E  L  P  K  K  S  S  P  C  S  A  S  C  I  D  P  F  C  L  H  P  S  W  Q  V  S  C  F  G  P  R  F  L  S  T  E  A  K  T  R  K  I  K  A  D  L  A  A  Q  V  S  P  L  T  Q  L  V  V  E  P  T  N  A  R  S  N  S  F  V  G  T  H  E  Y  L  A  P  E </first_frame>
            <second_frame>  T  *  N  L  R  M  C  W  S  E  K  T  V  I  S  C  C  L  I  L  I  Y  L  L  G  V  L  L  I  L  P  W  *  N  R  L  L  P  S  L  S  F  Q  K  S  L  V  R  A  Q  L  A  A  *  I  P  S  A  Y  I  R  R  G  K  Y  L  A  L  A  P  G  F  Y  L  Q  K  Q  R  H  V  K  *  R  L  T  *  L  H  K  S  H  L  *  H  S  L  L  W  S  Q  P  T  L  D  P  T  H  L  *  E  P  T  S  I  *  L  R   </second_frame>
            <third_frame>   L  K  T  *  E  C  V  G  P  R  R  R  S  Y  H  A  V  *  F  *  F  I  S  *  V  C  C  *  S  Y  L  G  E  I  V  F  S  H  H  *  A  S  K  K  V  *  S  V  L  S  *  L  H  R  S  L  L  P  T  S  V  V  A  S  I  L  L  W  P  Q  V  S  I  Y  R  S  K  D  T  *  N  K  G  *  P  S  C  T  S  L  T  F  N  T  A  C  C  G  A  N  Q  R  S  I  Q  L  I  C  R  N  P  R  V  S  S  S  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52822" stop="53175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKSSSPIIELPKKSSPCSASCIDPFCLHPSWQVSCFGPRFLSTEAKTRKIKADLAAQVSPLTQLVVEPTNARSNSFVGTHEYLAPE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="54749" PGL_stop="58043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54749" e_stop="55146"/>
            <exon e_start="55750" e_stop="55885"/>
            <exon e_start="56219" e_stop="56286"/>
            <exon e_start="56373" e_stop="56459"/>
            <exon e_start="57883" e_stop="58043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.917" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54749" e_stop="55146" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55147" i_stop="55749" i_length="603"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55750" e_stop="55885" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.813" acc_prob="0.980">
            <gDNA_intron_boundary i_start="55886" i_stop="56218" i_length="333"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56219" e_stop="56286" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.945">
            <gDNA_intron_boundary i_start="56287" i_stop="56372" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56373" e_stop="56459" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.917">
            <gDNA_intron_boundary i_start="56460" i_stop="57882" i_length="1423"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="57883" e_stop="58043" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54749" stop="55146"/>
              <exon start="55750" stop="55885"/>
              <exon start="56219" stop="56286"/>
              <exon start="56373" stop="56454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54756" stop="55146"/>
              <exon start="55750" stop="55885"/>
              <exon start="56219" stop="56286"/>
              <exon start="56373" stop="56459"/>
              <exon start="57883" stop="58035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54774" stop="55146"/>
              <exon start="55750" stop="55885"/>
              <exon start="56219" stop="56286"/>
              <exon start="56373" stop="56459"/>
              <exon start="57883" stop="58043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTATTGTTGCATTACCAGAACCAACCACCATTGAAGTTTTGAGTGATGAGGTCCTTACTCTTTAGTACAGTGACAATTCTAGCCCCTTCAAAATTACCAAACTGCCATCATTCTCACTATGCTGCTCCTCACTCTCTCAAATTCCCATTTCTCACTTCTCTTCTTCCTACTAAATCCCCATTTCTTCTTAAAGAAAGCTATAAAAGTGTAAAAATCAAAGCTTTAATGGAATCAGGAATGGACTCAAGTACAAAACCTTTTTCTGTTCTCTTTGTGTGTCTTGGAAACATATGCAGAAGTCCAGCTGCTGAAGGTGTTTTTACAGATTTGGTTAAGAAAAGGGGGCTTGATTCAAAGTTTAAGATTGATTCTGCTGGTACTATTAATTATCATGAG : GGAAATGAAGCTGATCCAAGAATGAGGGCTGCTGCTAAAAGGCGTGGAATTGCGATAACGTCTATATCTAGGCCAATTAGGGCTTCTGATTTCAAAGATTTTGATCTCATTCTTGCTATGGATGAGCAAAACAAAT : CTGATATTCTTGGGGCTCTGGAGAGGTGGATCCATAGAGAGCCATTGCCAGCTGATGCAGCGGAAAAG : GTCCGCTTGATGTGTTCCTACTGTAAGAAGCATCAGGAAACTGAAGTTCCAGACCCTTACTATGGTGGAGCTCAAGGTTTTGAGAAG : GTACTAGATATGCTTGAAGATGCTTGTGATTCACTGTTGGAAAGCATTGTGACAGAACAAAATTTAGGTTCATAGATGTACTTTAATCACCAGTATTCTTACTGCCAATAAGGCAATTGGTTATTCAAAGCATATACCATGTACTCTACTGCTCATTGTTT</gDNA_template>
            <first_frame> L  Y  C  C  I  T  R  T  N  H  H  *  S  F  E  *  *  G  P  Y  S  L  V  Q  *  Q  F  *  P  L  Q  N  Y  Q  T  A  I  I  L  T  M  L  L  L  T  L  S  N  S  H  F  S  L  L  F  F  L  L  N  P  H  F  F  L  K  K  A  I  K  V  *  K  S  K  L  *  W  N  Q  E  W  T  Q  V  Q  N  L  F  L  F  S  L  C  V  L  E  T  Y  A  E  V  Q  L  L  K  V  F  L  Q  I  W  L  R  K  G  G  L  I  Q  S  L  R  L  I  L  L  V  L  L  I  I  M  R :   E  M  K  L  I  Q  E  *  G  L  L  L  K  G  V  E  L  R  *  R  L  Y  L  G  Q  L  G  L  L  I  S  K  I  L  I  S  F  L  L  W  M  S  K  T  N  :  L  I  F  L  G  L  W  R  G  G  S  I  E  S  H  C  Q  L  M  Q  R  K  R :   S  A  *  C  V  P  T  V  R  S  I  R  K  L  K  F  Q  T  L  T  M  V  E  L  K  V  L  R  R :   Y  *  I  C  L  K  M  L  V  I  H  C  W  K  A  L  *  Q  N  K  I  *  V  H  R  C  T  L  I  T  S  I  L  T  A  N  K  A  I  G  Y  S  K  H  I  P  C  T  L  L  L  I  V  </first_frame>
            <second_frame>  F  I  V  A  L  P  E  P  T  T  I  E  V  L  S  D  E  V  L  T  L  *  Y  S  D  N  S  S  P  F  K  I  T  K  L  P  S  F  S  L  C  C  S  S  L  S  Q  I  P  I  S  H  F  S  S  S  Y  *  I  P  I  S  S  *  R  K  L  *  K  C  K  N  Q  S  F  N  G  I  R  N  G  L  K  Y  K  T  F  F  C  S  L  C  V  S  W  K  H  M  Q  K  S  S  C  *  R  C  F  Y  R  F  G  *  E  K  G  A  *  F  K  V  *  D  *  F  C  W  Y  Y  *  L  S  *   : G  K  *  S  *  S  K  N  E  G  C  C  *  K  A  W  N  C  D  N  V  Y  I  *  A  N  *  G  F  *  F  Q  R  F  *  S  H  S  C  Y  G  *  A  K  Q  I :   *  Y  S  W  G  S  G  E  V  D  P  *  R  A  I  A  S  *  C  S  G  K   : G  P  L  D  V  F  L  L  *  E  A  S  G  N  *  S  S  R  P  L  L  W  W  S  S  R  F  *  E   : G  T  R  Y  A  *  R  C  L  *  F  T  V  G  K  H  C  D  R  T  K  F  R  F  I  D  V  L  *  S  P  V  F  L  L  P  I  R  Q  L  V  I  Q  S  I  Y  H  V  L  Y  C  S  L  F </second_frame>
            <third_frame>   L  L  L  H  Y  Q  N  Q  P  P  L  K  F  *  V  M  R  S  L  L  F  S  T  V  T  I  L  A  P  S  K  L  P  N  C  H  H  S  H  Y  A  A  P  H  S  L  K  F  P  F  L  T  S  L  L  P  T  K  S  P  F  L  L  K  E  S  Y  K  S  V  K  I  K  A  L  M  E  S  G  M  D  S  S  T  K  P  F  S  V  L  F  V  C  L  G  N  I  C  R  S  P  A  A  E  G  V  F  T  D  L  V  K  K  R  G  L  D  S  K  F  K  I  D  S  A  G  T  I  N  Y  H  E  :  G  N  E  A  D  P  R  M  R  A  A  A  K  R  R  G  I  A  I  T  S  I  S  R  P  I  R  A  S  D  F  K  D  F  D  L  I  L  A  M  D  E  Q  N  K   : S  D  I  L  G  A  L  E  R  W  I  H  R  E  P  L  P  A  D  A  A  E  K  :  V  R  L  M  C  S  Y  C  K  K  H  Q  E  T  E  V  P  D  P  Y  Y  G  G  A  Q  G  F  E  K  :  V  L  D  M  L  E  D  A  C  D  S  L  L  E  S  I  V  T  E  Q  N  L  G  S  *  M  Y  F  N  H  Q  Y  S  Y  C  Q  *  G  N  W  L  F  K  A  Y  T  M  Y  S  T  A  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54793" stop="55146"/>
                    <exon start="55750" stop="55885"/>
                    <exon start="56219" stop="56286"/>
                    <exon start="56373" stop="56459"/>
                    <exon start="57883" stop="57957"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMRSLLFSTVTILAPSKLPNCHHSHYAAPHSLKFPFLTSLLPTKSPFLLKESYKSVKIKALMESGMDSSTKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGLDSKFKIDSAGTINYHEGNEADPRMRAAAKRRGIAITSISRPIRASDFKDFDLILAMDEQNKSDILGALERWIHREPLPADAAEKVRLMCSYCKKHQETEVPDPYYGGAQGFEKVLDMLEDACDSLLESIVTEQNLGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="59105" PGL_stop="58471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59105" e_stop="58471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="59105" e_stop="58471" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59105" stop="58477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58989" stop="58471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58958" stop="58551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCATTCACAGAAATGTTCTAACATAGAGTAGAATCGAACATGTAAAGAGATACATTGACAGCAGAAAAGATGAGTTGATTATTGTAAACATGAACTGTTTTCAGCTGACTGTGGCATGCATAAAAATGAAGAGGCCTGAAATAGCTGAAAAAGCAATTAAGATTGCGGAAAGACGCTTATCCAGAGATAGGTGGCCTGAGTACTACGATACAAGGCGAGGAGGGTTCATTGGGAAACAAGCACGTCTGTTTCAGACATGGACTATTGCAGGATATCTAGTGGCAAAGCTGCTTATTGCCAATCCAGAGGCTGCAAAGATGGTAATCAATGTGGAGGATACAGAACTTCTAAGTGCTTTTTCAAGCATTCTGAGTTCAAACCCAAGGCGAAAACGATCACGAAAAGGAGTTAAACAGTCCTTCATCATATGAAAGTTTTATTTTTGTTACTTAAGCCTTAAGTGTGTACTATTGACCTGAGATGAACTCAAATGGAATGATAATTGTCAGTGGAGATTCATATAGTCGACCCCCAAAGTGCTCGAGATTGAAGCATACTGTGTTGTTACCTAAAGCTTTTGTATAGTTACTATATATCTGCGCGATATACATACTAGTGTTGAAAATTCTGTAG</gDNA_template>
            <first_frame> C  H  S  Q  K  C  S  N  I  E  *  N  R  T  C  K  E  I  H  *  Q  Q  K  R  *  V  D  Y  C  K  H  E  L  F  S  A  D  C  G  M  H  K  N  E  E  A  *  N  S  *  K  S  N  *  D  C  G  K  T  L  I  Q  R  *  V  A  *  V  L  R  Y  K  A  R  R  V  H  W  E  T  S  T  S  V  S  D  M  D  Y  C  R  I  S  S  G  K  A  A  Y  C  Q  S  R  G  C  K  D  G  N  Q  C  G  G  Y  R  T  S  K  C  F  F  K  H  S  E  F  K  P  K  A  K  T  I  T  K  R  S  *  T  V  L  H  H  M  K  V  L  F  L  L  L  K  P  *  V  C  T  I  D  L  R  *  T  Q  M  E  *  *  L  S  V  E  I  H  I  V  D  P  Q  S  A  R  D  *  S  I  L  C  C  Y  L  K  L  L  Y  S  Y  Y  I  S  A  R  Y  T  Y  *  C  *  K  F  C   </first_frame>
            <second_frame>  V  I  H  R  N  V  L  T  *  S  R  I  E  H  V  K  R  Y  I  D  S  R  K  D  E  L  I  I  V  N  M  N  C  F  Q  L  T  V  A  C  I  K  M  K  R  P  E  I  A  E  K  A  I  K  I  A  E  R  R  L  S  R  D  R  W  P  E  Y  Y  D  T  R  R  G  G  F  I  G  K  Q  A  R  L  F  Q  T  W  T  I  A  G  Y  L  V  A  K  L  L  I  A  N  P  E  A  A  K  M  V  I  N  V  E  D  T  E  L  L  S  A  F  S  S  I  L  S  S  N  P  R  R  K  R  S  R  K  G  V  K  Q  S  F  I  I  *  K  F  Y  F  C  Y  L  S  L  K  C  V  L  L  T  *  D  E  L  K  W  N  D  N  C  Q  W  R  F  I  *  S  T  P  K  V  L  E  I  E  A  Y  C  V  V  T  *  S  F  C  I  V  T  I  Y  L  R  D  I  H  T  S  V  E  N  S  V  </second_frame>
            <third_frame>   S  F  T  E  M  F  *  H  R  V  E  S  N  M  *  R  D  T  L  T  A  E  K  M  S  *  L  L  *  T  *  T  V  F  S  *  L  W  H  A  *  K  *  R  G  L  K  *  L  K  K  Q  L  R  L  R  K  D  A  Y  P  E  I  G  G  L  S  T  T  I  Q  G  E  E  G  S  L  G  N  K  H  V  C  F  R  H  G  L  L  Q  D  I  *  W  Q  S  C  L  L  P  I  Q  R  L  Q  R  W  *  S  M  W  R  I  Q  N  F  *  V  L  F  Q  A  F  *  V  Q  T  Q  G  E  N  D  H  E  K  E  L  N  S  P  S  S  Y  E  S  F  I  F  V  T  *  A  L  S  V  Y  Y  *  P  E  M  N  S  N  G  M  I  I  V  S  G  D  S  Y  S  R  P  P  K  C  S  R  L  K  H  T  V  L  L  P  K  A  F  V  *  L  L  Y  I  C  A  I  Y  I  L  V  L  K  I  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59077" stop="58673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRIEHVKRYIDSRKDELIIVNMNCFQLTVACIKMKRPEIAEKAIKIAERRLSRDRWPEYYDTRRGGFIGKQARLFQTWTIAGYLVAKLLIANPEAAKMVINVEDTELLSAFSSILSSNPRRKRSRKGVKQSFII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="63140" PGL_stop="65494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63140" e_stop="63416"/>
            <exon e_start="64397" e_stop="64425"/>
            <exon e_start="64534" e_stop="64728"/>
            <exon e_start="64822" e_stop="64906"/>
            <exon e_start="65067" e_stop="65142"/>
            <exon e_start="65358" e_stop="65494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.064" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.405" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.787" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63140" e_stop="63416" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63417" i_stop="64396" i_length="980"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64397" e_stop="64425" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.064" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64426" i_stop="64533" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64534" e_stop="64728" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.690">
            <gDNA_intron_boundary i_start="64729" i_stop="64821" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64822" e_stop="64906" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.405" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64907" i_stop="65066" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65067" e_stop="65142" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.787">
            <gDNA_intron_boundary i_start="65143" i_stop="65357" i_length="215"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65358" e_stop="65494" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63140" stop="63416"/>
              <exon start="64397" stop="64425"/>
              <exon start="64534" stop="64728"/>
              <exon start="64822" stop="64906"/>
              <exon start="65067" stop="65142"/>
              <exon start="65358" stop="65425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65078" stop="65142"/>
              <exon start="65358" stop="65494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATGGCGCGAGGCTTCTTGATTTCTACACAAACCAAAAATTCTTCACATTTTCTTCTAAACTCCATTTCTGAAACTTCAAGATTAACTAAATTACCCTATTACCCTTCTTCATCATCTCTCCGTTTCTCTCTTTCACCTCCTCCTTCTCCACCTCGGTTTCTGTGCAGTTGTTGCAGTCACTTCCAAGAAAATGGCACAATTGACATGTCAGTACACTCAGAGGCATTTGCAAAGCGTATGGCTATGGTGGGTCTCAAACCCCATCATCGTATTG : GTTTTGCAGTTATAAAATATCAAATCCAA : TTCTGGGCGTTTCTGGTGGCCCTGATAGCATGGCCCTCTGTGTCTTAACTGCTGCATGGAAAACCAATAACCTTGGTAATGCTGCTCAAAAGAATGAGTTTGTTGACGGGCTTTTAGCAGTGGTAGTTGATCATGGACTTCGTGCTGAGAGTAAAGATGAAGCTCACCTTGTTCATCGTCGAGTCACAAGCATGG : GAATCAAATGTGAGATTGTTTGCTGTGAATGGTCAGAAGGCAAGCCAAAGCAGGGTCACTTGCAAGAAGCTGCTCGCCAGAAGAG : GTATGAAATTCTCCAAAGTGCTTGCATCCGGCATCAGATTGGTGTGTTGATGACTGCACACCATGCAGATGACCAG : GCAGAACTATTCATTCTTAGGTTATCTCGCAGTAGTGGCGTGCTTGGACTCGCTGGAATGGCATCTGTTTCAGAGCTGTTTTTTACATGTCCAGATTTAAGTGCTGAAGTGAGTAGCAATGGACTTTTATTGGTGAG</gDNA_template>
            <first_frame> S  M  A  R  G  F  L  I  S  T  Q  T  K  N  S  S  H  F  L  L  N  S  I  S  E  T  S  R  L  T  K  L  P  Y  Y  P  S  S  S  S  L  R  F  S  L  S  P  P  P  S  P  P  R  F  L  C  S  C  C  S  H  F  Q  E  N  G  T  I  D  M  S  V  H  S  E  A  F  A  K  R  M  A  M  V  G  L  K  P  H  H  R  I   : G  F  A  V  I  K  Y  Q  I  Q  :  F  W  A  F  L  V  A  L  I  A  W  P  S  V  S  *  L  L  H  G  K  P  I  T  L  V  M  L  L  K  R  M  S  L  L  T  G  F  *  Q  W  *  L  I  M  D  F  V  L  R  V  K  M  K  L  T  L  F  I  V  E  S  Q  A  W  :  E  S  N  V  R  L  F  A  V  N  G  Q  K  A  S  Q  S  R  V  T  C  K  K  L  L  A  R  R   : G  M  K  F  S  K  V  L  A  S  G  I  R  L  V  C  *  *  L  H  T  M  Q  M  T  R :   Q  N  Y  S  F  L  G  Y  L  A  V  V  A  C  L  D  S  L  E  W  H  L  F  Q  S  C  F  L  H  V  Q  I  *  V  L  K  *  V  A  M  D  F  Y  W  *  </first_frame>
            <second_frame>  Q  W  R  E  A  S  *  F  L  H  K  P  K  I  L  H  I  F  F  *  T  P  F  L  K  L  Q  D  *  L  N  Y  P  I  T  L  L  H  H  L  S  V  S  L  F  H  L  L  L  L  H  L  G  F  C  A  V  V  A  V  T  S  K  K  M  A  Q  L  T  C  Q  Y  T  Q  R  H  L  Q  S  V  W  L  W  W  V  S  N  P  I  I  V  L  :  V  L  Q  L  *  N  I  K  S  N :   S  G  R  F  W  W  P  *  *  H  G  P  L  C  L  N  C  C  M  E  N  Q  *  P  W  *  C  C  S  K  E  *  V  C  *  R  A  F  S  S  G  S  *  S  W  T  S  C  *  E  *  R  *  S  S  P  C  S  S  S  S  H  K  H  G :   N  Q  M  *  D  C  L  L  *  M  V  R  R  Q  A  K  A  G  S  L  A  R  S  C  S  P  E  E  :  V  *  N  S  P  K  C  L  H  P  A  S  D  W  C  V  D  D  C  T  P  C  R  *  P   : G  R  T  I  H  S  *  V  I  S  Q  *  W  R  A  W  T  R  W  N  G  I  C  F  R  A  V  F  Y  M  S  R  F  K  C  *  S  E  *  Q  W  T  F  I  G  E </second_frame>
            <third_frame>   N  G  A  R  L  L  D  F  Y  T  N  Q  K  F  F  T  F  S  S  K  L  H  F  *  N  F  K  I  N  *  I  T  L  L  P  F  F  I  I  S  P  F  L  S  F  T  S  S  F  S  T  S  V  S  V  Q  L  L  Q  S  L  P  R  K  W  H  N  *  H  V  S  T  L  R  G  I  C  K  A  Y  G  Y  G  G  S  Q  T  P  S  S  Y  W :   F  C  S  Y  K  I  S  N  P   : I  L  G  V  S  G  G  P  D  S  M  A  L  C  V  L  T  A  A  W  K  T  N  N  L  G  N  A  A  Q  K  N  E  F  V  D  G  L  L  A  V  V  V  D  H  G  L  R  A  E  S  K  D  E  A  H  L  V  H  R  R  V  T  S  M   : G  I  K  C  E  I  V  C  C  E  W  S  E  G  K  P  K  Q  G  H  L  Q  E  A  A  R  Q  K  R :   Y  E  I  L  Q  S  A  C  I  R  H  Q  I  G  V  L  M  T  A  H  H  A  D  D  Q  :  A  E  L  F  I  L  R  L  S  R  S  S  G  V  L  G  L  A  G  M  A  S  V  S  E  L  F  F  T  C  P  D  L  S  A  E  V  S  S  N  G  L  L  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63346" stop="63416"/>
                    <exon start="64397" stop="64425"/>
                    <exon start="64534" stop="64728"/>
                    <exon start="64822" stop="64906"/>
                    <exon start="65067" stop="65142"/>
                    <exon start="65358" stop="65492"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVSTLRGICKAYGYGGSQTPSSYWFCSYKISNPILGVSGGPDSMALCVLTAAWKTNNLGNAAQKNEFVDGLLAVVVDHGLRAESKDEAHLVHRRVTSMGIKCEIVCCEWSEGKPKQGHLQEAARQKRYEILQSACIRHQIGVLMTAHHADDQAELFILRLSRSSGVLGLAGMASVSELFFTCPDLSAEVSSNGLLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="82220" PGL_stop="86819"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82220" e_stop="82304"/>
            <exon e_start="85389" e_stop="85488"/>
            <exon e_start="85588" e_stop="85775"/>
            <exon e_start="86536" e_stop="86819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82220" e_stop="82304" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82305" i_stop="85388" i_length="3084"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85389" e_stop="85488" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85588" e_stop="85775" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86536" e_stop="86819" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82220" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82220" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82220" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82225" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82227" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82238" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82244" stop="82304"/>
              <exon start="85389" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340677" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAACGGAGAAGCATACTTCCCGTAGTTGTAGCAGTAGCTTGCCGGAGCCGGCGATCGGAGATACTTCCGTCCATAGCCGAAG : CTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</gDNA_template>
            <first_frame> R  K  R  R  S  I  L  P  V  V  V  A  V  A  C  R  S  R  R  S  E  I  L  P  S  I  A  E   : A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M  S  R  L  C  K  W  *  L  I  C  F  S  N  S  C  M  L  *  D  Q  M  F  L  L  A  F  Q  S  I  R  N  L  L  S  V  M  T  K  D  S  D  G  L  F  S  L  *  P  F  I  L </first_frame>
            <second_frame>  E  N  G  E  A  Y  F  P  *  L  *  Q  *  L  A  G  A  G  D  R  R  Y  F  R  P  *  P  K  :  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  Q  G  C  A  S  G  D  *  F  A  F  P  I  A  V  C  Y  E  I  R  C  S  Y  W  L  F  K  A  L  E  T  F  C  L  *  *  P  R  I  V  M  D  Y  S  V  F  N  L  L  S   </second_frame>
            <third_frame>   K  T  E  K  H  T  S  R  S  C  S  S  S  L  P  E  P  A  I  G  D  T  S  V  H  S  R  S :   *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V  K  V  V  Q  V  V  T  N  L  L  F  Q  *  L  Y  V  M  R  S  D  V  L  T  G  F  S  K  H  *  K  P  F  V  C  N  D  Q  G  *  *  W  I  I  Q  S  L  T  F  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82299" stop="82304"/>
                    <exon start="85389" stop="85488"/>
                    <exon start="85588" stop="85775"/>
                    <exon start="86536" stop="86691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGCQGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85385" e_stop="85488"/>
            <exon e_start="85588" e_stop="85775"/>
            <exon e_start="86536" e_stop="86819"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="85385" e_stop="85488" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="85489" i_stop="85587" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85588" e_stop="85775" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.978">
            <gDNA_intron_boundary i_start="85776" i_stop="86535" i_length="760"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86536" e_stop="86819" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85385" stop="85488"/>
              <exon start="85588" stop="85775"/>
              <exon start="86536" stop="86819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCTGAAAATGCCTAGAGTTAAGACAAACCGTATAAAATACCCTGAGGGTTGGGAGTTGATTGAGCCTACGTTAGCTGAACTGGATGTTAAAATGAGAGAAG : CTGGCAATGACTCTAATGACGGTAAAAGAAAGTGTGAAGCACTCTGGCCCATATTCAAGGTTGCACATCAGAGGAGCAGATATGTATATGACCTTTACTATGGAAGGAATGAAATATCTAAAGAGCTGTATGAATTCTGTTTGGAACAAGGTTATGCAGATCGCAACTTGATTGCAAAGTGGAAAAAG : CCTGGATACGAGCGTCTCTGCTGCTTGCACTGCATACAGCCCCGGGATCACAACTTTGCGACTACTTGTGCGTGTCGTGTCCCCAAACACCTCAGGGAAACTGCTGTAATTGAATGTGTACATTGTGGATGTCAAGGTTGTGCAAGTGGTGACTAATTTGCTTTTCCAATAGCTGTATGTTATGAGATCAGATGTTCTTACTGGCTTTTCAAAGCATTAGAAACCTTTTGTCTGTAATGACCAAGGATAGTGATGGATTATTCAGTCTTTAACCTTTTATCCTA</gDNA_template>
            <first_frame> A  A  E  N  A  *  S  *  D  K  P  Y  K  I  P  *  G  L  G  V  D  *  A  Y  V  S  *  T  G  C  *  N  E  R  S :   W  Q  *  L  *  *  R  *  K  K  V  *  S  T  L  A  H  I  Q  G  C  T  S  E  E  Q  I  C  I  *  P  L  L  W  K  E  *  N  I  *  R  A  V  *  I  L  F  G  T  R  L  C  R  S  Q  L  D  C  K  V  E  K   : A  W  I  R  A  S  L  L  L  A  L  H  T  A  P  G  S  Q  L  C  D  Y  L  C  V  S  C  P  Q  T  P  Q  G  N  C  C  N  *  M  C  T  L  W  M  S  R  L  C  K  W  *  L  I  C  F  S  N  S  C  M  L  *  D  Q  M  F  L  L  A  F  Q  S  I  R  N  L  L  S  V  M  T  K  D  S  D  G  L  F  S  L  *  P  F  I  L </first_frame>
            <second_frame>  Q  L  K  M  P  R  V  K  T  N  R  I  K  Y  P  E  G  W  E  L  I  E  P  T  L  A  E  L  D  V  K  M  R  E   : A  G  N  D  S  N  D  G  K  R  K  C  E  A  L  W  P  I  F  K  V  A  H  Q  R  S  R  Y  V  Y  D  L  Y  Y  G  R  N  E  I  S  K  E  L  Y  E  F  C  L  E  Q  G  Y  A  D  R  N  L  I  A  K  W  K  K  :  P  G  Y  E  R  L  C  C  L  H  C  I  Q  P  R  D  H  N  F  A  T  T  C  A  C  R  V  P  K  H  L  R  E  T  A  V  I  E  C  V  H  C  G  C  Q  G  C  A  S  G  D  *  F  A  F  P  I  A  V  C  Y  E  I  R  C  S  Y  W  L  F  K  A  L  E  T  F  C  L  *  *  P  R  I  V  M  D  Y  S  V  F  N  L  L  S   </second_frame>
            <third_frame>   S  *  K  C  L  E  L  R  Q  T  V  *  N  T  L  R  V  G  S  *  L  S  L  R  *  L  N  W  M  L  K  *  E  K  :  L  A  M  T  L  M  T  V  K  E  S  V  K  H  S  G  P  Y  S  R  L  H  I  R  G  A  D  M  Y  M  T  F  T  M  E  G  M  K  Y  L  K  S  C  M  N  S  V  W  N  K  V  M  Q  I  A  T  *  L  Q  S  G  K  S :   L  D  T  S  V  S  A  A  C  T  A  Y  S  P  G  I  T  T  L  R  L  L  V  R  V  V  S  P  N  T  S  G  K  L  L  *  L  N  V  Y  I  V  D  V  K  V  V  Q  V  V  T  N  L  L  F  Q  *  L  Y  V  M  R  S  D  V  L  T  G  F  S  K  H  *  K  P  F  V  C  N  D  Q  G  *  *  W  I  I  Q  S  L  T  F  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85386" stop="85488"/>
                    <exon start="85588" stop="85775"/>
                    <exon start="86536" stop="86691"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLKMPRVKTNRIKYPEGWELIEPTLAELDVKMREAGNDSNDGKRKCEALWPIFKVAHQRSRYVYDLYYGRNEISKELYEFCLEQGYADRNLIAKWKKPGYERLCCLHCIQPRDHNFATTCACRVPKHLRETAVIECVHCGCQGCASGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="106240" PGL_stop="99273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106240" e_stop="106107"/>
            <exon e_start="101801" e_stop="101494"/>
            <exon e_start="101078" e_stop="100532"/>
            <exon e_start="99291" e_stop="99273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.786" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106240" e_stop="106107" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.786" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106106" i_stop="101802" i_length="4305"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="101801" e_stop="101494" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="101078" e_stop="100532" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="100531" i_stop="99292" i_length="1240"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="99291" e_stop="99273" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106240" stop="106107"/>
              <exon start="101801" stop="101494"/>
              <exon start="101078" stop="100846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106239" stop="106107"/>
              <exon start="101801" stop="101494"/>
              <exon start="101078" stop="100880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106239" stop="106107"/>
              <exon start="101801" stop="101636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106233" stop="106107"/>
              <exon start="101801" stop="101521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101583" stop="101494"/>
              <exon start="101078" stop="100532"/>
              <exon start="99291" stop="99273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101563" stop="101494"/>
              <exon start="101078" stop="100560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATCTTCCAATTTGACGCCATTACAGACGCATCACAGTTCTCCATCTTCGTAACTTTGCACCAATCGCATCATCACCATCATGATTAGAGGAGAAACAGTGGAATTTCCTTCATATTCTCATCTTAAAAAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> S  N  L  P  I  *  R  H  Y  R  R  I  T  V  L  H  L  R  N  F  A  P  I  A  S  S  P  S  *  L  E  E  K  Q  W  N  F  L  H  I  L  I  L  K  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  Q  I  F  Q  F  D  A  I  T  D  A  S  Q  F  S  I  F  V  T  L  H  Q  S  H  H  H  H  H  D  *  R  R  N  S  G  I  S  F  I  F  S  S  *  K   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   K  S  S  N  L  T  P  L  Q  T  H  H  S  S  P  S  S  *  L  C  T  N  R  I  I  T  I  M  I  R  G  E  T  V  E  F  P  S  Y  S  H  L  K  K  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106153" stop="106107"/>
                    <exon start="101801" stop="101494"/>
                    <exon start="101078" stop="100732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEEKQWNFLHILILKRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103360" e_stop="103191"/>
            <exon e_start="101801" e_stop="101494"/>
            <exon e_start="101078" e_stop="100532"/>
            <exon e_start="99291" e_stop="99273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.589" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103360" e_stop="103191" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.995">
            <gDNA_intron_boundary i_start="103190" i_stop="101802" i_length="1389"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101801" e_stop="101494" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101493" i_stop="101079" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="101078" e_stop="100532" e_length="547"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.589">
            <gDNA_intron_boundary i_start="100531" i_stop="99292" i_length="1240"/>
          </intron>
          <exon e_serial="4" e_score="0.789">
            <gDNA_exon_boundary e_start="99291" e_stop="99273" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103360" stop="103191"/>
              <exon start="101801" stop="101533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101583" stop="101494"/>
              <exon start="101078" stop="100532"/>
              <exon start="99291" stop="99273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101563" stop="101494"/>
              <exon start="101078" stop="100560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGTATTACTACTACAGCAAAACCTGAACCTCCTGAGAACTCTAAGGATTTTAAGCAGCTGGTCCAAAATGCCTTCTTCAGGTTCGTGAGGCACTTGAATGAGACTCCAGCTAAAAGAAGAAAATTCAGTGAGCAAGCTGGTAGTTTAAAGTGCCTCGTGTGTGGCAG : AGATTCAGAAGAGTTTGTAGACTCAGAGAGCCTCGTGCGTCATGCATTAACATCCTCTAAGGCTGGTCTCAGATCGCAGCACTTAGGCCTTCACAAAGCTTTATGTGCTTTGATGGGATGGAAGAGTGCAGATTCTCATGAAGATAGTTGGGTTTGTGAAAAGCTATCCAATGCTGAAACTGTGGCTTTGAAGGAAGATCTAATCATCTGGCCTCCAGTTGTTATCATCCATAACAGTTCCATAACTAGCAGCAATCCGGATCAGCGTGTGGTTGTATCAGCTGAAGAGCTCGAGTCTAAGCTGAGAG : ATATGGGCTTCGGGGAGAAGGCCAAGGTTTCTCGTGGTAAGCCTGCAAATCAGAGTATTCTTATGGTGAAGTTTAGCGCTACTCTCTCAGGTTTGGAAGAAGCAGTGAGACTGTGTGATATCTACGCCCATCGGAAGCATGGAAGGGCGGATTTCCAGCGTATAAGTTCTGGTCAGTCTGGAAACAATGACGATGAAACTAAAGAACCATTGACAGACAAAGTAGGTAAAATCCTTTATGGTTACCTTGGAATTGCAGAAGACCTGGACAAAGTTGATTTCGAAACGAAGAAACGAAGTTCTGTGAGGAGCAAGAAGCAGATCAAGGTTATTGCAGTTGCACCATGAGAAGGAAAGACCAAGTTTTAGTTTGGCAGGGCAAAAATATATGTTCTGAATGATAGCTAGACACTTTGGCTTTGGGTTTTGCTTTTGCTTGCAGCTAATTATATTTTGCTATCTAACTTGATGAAAGTAGATACACCCAAATATCATCATATATATATATATATTATTATATATATCATCATATCATATATTATTATAAG : AAGAAAAAAAAGATGAAAC</gDNA_template>
            <first_frame> E  G  I  T  T  T  A  K  P  E  P  P  E  N  S  K  D  F  K  Q  L  V  Q  N  A  F  F  R  F  V  R  H  L  N  E  T  P  A  K  R  R  K  F  S  E  Q  A  G  S  L  K  C  L  V  C  G  R :   D  S  E  E  F  V  D  S  E  S  L  V  R  H  A  L  T  S  S  K  A  G  L  R  S  Q  H  L  G  L  H  K  A  L  C  A  L  M  G  W  K  S  A  D  S  H  E  D  S  W  V  C  E  K  L  S  N  A  E  T  V  A  L  K  E  D  L  I  I  W  P  P  V  V  I  I  H  N  S  S  I  T  S  S  N  P  D  Q  R  V  V  V  S  A  E  E  L  E  S  K  L  R   : D  M  G  F  G  E  K  A  K  V  S  R  G  K  P  A  N  Q  S  I  L  M  V  K  F  S  A  T  L  S  G  L  E  E  A  V  R  L  C  D  I  Y  A  H  R  K  H  G  R  A  D  F  Q  R  I  S  S  G  Q  S  G  N  N  D  D  E  T  K  E  P  L  T  D  K  V  G  K  I  L  Y  G  Y  L  G  I  A  E  D  L  D  K  V  D  F  E  T  K  K  R  S  S  V  R  S  K  K  Q  I  K  V  I  A  V  A  P  *  E  G  K  T  K  F  *  F  G  R  A  K  I  Y  V  L  N  D  S  *  T  L  W  L  W  V  L  L  L  L  A  A  N  Y  I  L  L  S  N  L  M  K  V  D  T  P  K  Y  H  H  I  Y  I  Y  I  I  I  Y  I  I  I  S  Y  I  I  I  R :   R  K  K  R  *  N </first_frame>
            <second_frame>  K  V  L  L  L  Q  Q  N  L  N  L  L  R  T  L  R  I  L  S  S  W  S  K  M  P  S  S  G  S  *  G  T  *  M  R  L  Q  L  K  E  E  N  S  V  S  K  L  V  V  *  S  A  S  C  V  A   : E  I  Q  K  S  L  *  T  Q  R  A  S  C  V  M  H  *  H  P  L  R  L  V  S  D  R  S  T  *  A  F  T  K  L  Y  V  L  *  W  D  G  R  V  Q  I  L  M  K  I  V  G  F  V  K  S  Y  P  M  L  K  L  W  L  *  R  K  I  *  S  S  G  L  Q  L  L  S  S  I  T  V  P  *  L  A  A  I  R  I  S  V  W  L  Y  Q  L  K  S  S  S  L  S  *  E  :  I  W  A  S  G  R  R  P  R  F  L  V  V  S  L  Q  I  R  V  F  L  W  *  S  L  A  L  L  S  Q  V  W  K  K  Q  *  D  C  V  I  S  T  P  I  G  S  M  E  G  R  I  S  S  V  *  V  L  V  S  L  E  T  M  T  M  K  L  K  N  H  *  Q  T  K  *  V  K  S  F  M  V  T  L  E  L  Q  K  T  W  T  K  L  I  S  K  R  R  N  E  V  L  *  G  A  R  S  R  S  R  L  L  Q  L  H  H  E  K  E  R  P  S  F  S  L  A  G  Q  K  Y  M  F  *  M  I  A  R  H  F  G  F  G  F  C  F  C  L  Q  L  I  I  F  C  Y  L  T  *  *  K  *  I  H  P  N  I  I  I  Y  I  Y  I  L  L  Y  I  S  S  Y  H  I  L  L  *   : E  E  K  K  D  E   </second_frame>
            <third_frame>   R  Y  Y  Y  Y  S  K  T  *  T  S  *  E  L  *  G  F  *  A  A  G  P  K  C  L  L  Q  V  R  E  A  L  E  *  D  S  S  *  K  K  K  I  Q  *  A  S  W  *  F  K  V  P  R  V  W  Q  :  R  F  R  R  V  C  R  L  R  E  P  R  A  S  C  I  N  I  L  *  G  W  S  Q  I  A  A  L  R  P  S  Q  S  F  M  C  F  D  G  M  E  E  C  R  F  S  *  R  *  L  G  L  *  K  A  I  Q  C  *  N  C  G  F  E  G  R  S  N  H  L  A  S  S  C  Y  H  P  *  Q  F  H  N  *  Q  Q  S  G  S  A  C  G  C  I  S  *  R  A  R  V  *  A  E  R :   Y  G  L  R  G  E  G  Q  G  F  S  W  *  A  C  K  S  E  Y  S  Y  G  E  V  *  R  Y  S  L  R  F  G  R  S  S  E  T  V  *  Y  L  R  P  S  E  A  W  K  G  G  F  P  A  Y  K  F  W  S  V  W  K  Q  *  R  *  N  *  R  T  I  D  R  Q  S  R  *  N  P  L  W  L  P  W  N  C  R  R  P  G  Q  S  *  F  R  N  E  E  T  K  F  C  E  E  Q  E  A  D  Q  G  Y  C  S  C  T  M  R  R  K  D  Q  V  L  V  W  Q  G  K  N  I  C  S  E  *  *  L  D  T  L  A  L  G  F  A  F  A  C  S  *  L  Y  F  A  I  *  L  D  E  S  R  Y  T  Q  I  S  S  Y  I  Y  I  Y  Y  Y  I  Y  H  H  I  I  Y  Y  Y  K  :  K  K  K  K  M  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103360" stop="103191"/>
                    <exon start="101801" stop="101494"/>
                    <exon start="101078" stop="100732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGITTTAKPEPPENSKDFKQLVQNAFFRFVRHLNETPAKRRKFSEQAGSLKCLVCGRDSEEFVDSESLVRHALTSSKAGLRSQHLGLHKALCALMGWKSADSHEDSWVCEKLSNAETVALKEDLIIWPPVVIIHNSSITSSNPDQRVVVSAEELESKLRDMGFGEKAKVSRGKPANQSILMVKFSATLSGLEEAVRLCDIYAHRKHGRADFQRISSGQSGNNDDETKEPLTDKVGKILYGYLGIAEDLDKVDFETKKRSSVRSKKQIKVIAVAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103036" e_stop="102343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="103036" e_stop="102343" e_length="694"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103036" stop="102343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103035" stop="102486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAGACTAGCTGGGCTCCCATGAGGCGTTTTCATTCCATGCTGCTTCAACCCATGAAGTCTGTTGGAGTAAAAAAAAAAATCCTGCACGGATGGAATGAAATGTGCCTGAATACAGTCGTTATATAAGGATTTTTTTTATATATTTGGCTCTAAGTAGTGTGGTTTCAAGGATTACTTTATTGATGCATGGAAACTCCGGAGTTGGAGAAAAAGTTCAATTATGTAGGTCGGAAGTCTTATTGTTCAGGAAATTATATAACCCAAAGCTTAGGGCATTTCCTCTCGATCTGGCTAGTTAGCACCATCTCATATAAGGTGCTTATTATGAAGAGCAAATGTATTTTTTGAGTTAGTACATTTGCCCTTATCTTAAAATGGTGCTTACAAAGAAGATCAAATACCTTGGTTGTTCAAACAACCATGACTTTGAGGAAATGAAAAGGGAAGATGTTGAATGAGTTGCTAAAGAAACCTCTCTCTGCTGTTCCCTTAAGTATTTGACACTAACCTGGATTTGACACACCAGATGTTCAAGTGGTGTGATTGCTTGGGAAAGGGGCTGTAGCTGAAGCAGTTTGTTTGATAATTGGGTTTAAATAGAAGCTATAACAGTTTGCATATTTCTTATTTTAAGTCTGATGATTAGTAGCGTCTCCACTTAACCATAGTCAATGTTGATCCTACTGCATGA</gDNA_template>
            <first_frame> K  E  T  S  W  A  P  M  R  R  F  H  S  M  L  L  Q  P  M  K  S  V  G  V  K  K  K  I  L  H  G  W  N  E  M  C  L  N  T  V  V  I  *  G  F  F  L  Y  I  W  L  *  V  V  W  F  Q  G  L  L  Y  *  C  M  E  T  P  E  L  E  K  K  F  N  Y  V  G  R  K  S  Y  C  S  G  N  Y  I  T  Q  S  L  G  H  F  L  S  I  W  L  V  S  T  I  S  Y  K  V  L  I  M  K  S  K  C  I  F  *  V  S  T  F  A  L  I  L  K  W  C  L  Q  R  R  S  N  T  L  V  V  Q  T  T  M  T  L  R  K  *  K  G  K  M  L  N  E  L  L  K  K  P  L  S  A  V  P  L  S  I  *  H  *  P  G  F  D  T  P  D  V  Q  V  V  *  L  L  G  K  G  A  V  A  E  A  V  C  L  I  I  G  F  K  *  K  L  *  Q  F  A  Y  F  L  F  *  V  *  *  L  V  A  S  P  L  N  H  S  Q  C  *  S  Y  C  M  </first_frame>
            <second_frame>  R  R  L  A  G  L  P  *  G  V  F  I  P  C  C  F  N  P  *  S  L  L  E  *  K  K  K  S  C  T  D  G  M  K  C  A  *  I  Q  S  L  Y  K  D  F  F  Y  I  F  G  S  K  *  C  G  F  K  D  Y  F  I  D  A  W  K  L  R  S  W  R  K  S  S  I  M  *  V  G  S  L  I  V  Q  E  I  I  *  P  K  A  *  G  I  S  S  R  S  G  *  L  A  P  S  H  I  R  C  L  L  *  R  A  N  V  F  F  E  L  V  H  L  P  L  S  *  N  G  A  Y  K  E  D  Q  I  P  W  L  F  K  Q  P  *  L  *  G  N  E  K  G  R  C  *  M  S  C  *  R  N  L  S  L  L  F  P  *  V  F  D  T  N  L  D  L  T  H  Q  M  F  K  W  C  D  C  L  G  K  G  L  *  L  K  Q  F  V  *  *  L  G  L  N  R  S  Y  N  S  L  H  I  S  Y  F  K  S  D  D  *  *  R  L  H  L  T  I  V  N  V  D  P  T  A  * </second_frame>
            <third_frame>   G  D  *  L  G  S  H  E  A  F  S  F  H  A  A  S  T  H  E  V  C  W  S  K  K  K  N  P  A  R  M  E  *  N  V  P  E  Y  S  R  Y  I  R  I  F  F  I  Y  L  A  L  S  S  V  V  S  R  I  T  L  L  M  H  G  N  S  G  V  G  E  K  V  Q  L  C  R  S  E  V  L  L  F  R  K  L  Y  N  P  K  L  R  A  F  P  L  D  L  A  S  *  H  H  L  I  *  G  A  Y  Y  E  E  Q  M  Y  F  L  S  *  Y  I  C  P  Y  L  K  M  V  L  T  K  K  I  K  Y  L  G  C  S  N  N  H  D  F  E  E  M  K  R  E  D  V  E  *  V  A  K  E  T  S  L  C  C  S  L  K  Y  L  T  L  T  W  I  *  H  T  R  C  S  S  G  V  I  A  W  E  R  G  C  S  *  S  S  L  F  D  N  W  V  *  I  E  A  I  T  V  C  I  F  L  I  L  S  L  M  I  S  S  V  S  T  *  P  *  S  M  L  I  L  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102935" stop="102735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPEYSRYIRIFFIYLALSSVVSRITLLMHGNSGVGEKVQLCRSEVLLFRKLYNPKLRAFPLDLAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="100581" PGL_stop="100998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100581" e_stop="100998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="100581" e_stop="100998" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100581" stop="100998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGATGATATTTGGGTGTATCTACTTTCATCAAGTTAGATAGCAAAATATAATTAGCTGCAAGCAAAAGCAAAACCCAAAGCCAAAGTGTCTAGCTATCATTCAGAACATATATTTTTGCCCTGCCAAACTAAAACTTGGTCTTTCCTTCTCATGGTGCAACTGCAATAACCTTGATCTGCTTCTTGCTCCTCACAGAACTTCGTTTCTTCGTTTCGAAATCAACTTTGTCCAGGTCTTCTGCAATTCCAAGGTAACCATAAAGGATTTTACCTACTTTGTCTGTCAATGGTTCTTTAGTTTCATCGTCATTGTTTCCAGACTGACCAGAACTTATACGCTGGAAATCCGCCCTTCCATGCTTCCGATGGGCGTAGATATCACACAGTCTCACTGCTTCTTCCAAACCTGAGAGAGT</gDNA_template>
            <first_frame> Y  D  D  I  W  V  Y  L  L  S  S  S  *  I  A  K  Y  N  *  L  Q  A  K  A  K  P  K  A  K  V  S  S  Y  H  S  E  H  I  F  L  P  C  Q  T  K  T  W  S  F  L  L  M  V  Q  L  Q  *  P  *  S  A  S  C  S  S  Q  N  F  V  S  S  F  R  N  Q  L  C  P  G  L  L  Q  F  Q  G  N  H  K  G  F  Y  L  L  C  L  S  M  V  L  *  F  H  R  H  C  F  Q  T  D  Q  N  L  Y  A  G  N  P  P  F  H  A  S  D  G  R  R  Y  H  T  V  S  L  L  L  P  N  L  R  E  </first_frame>
            <second_frame>  M  M  I  F  G  C  I  Y  F  H  Q  V  R  *  Q  N  I  I  S  C  K  Q  K  Q  N  P  K  P  K  C  L  A  I  I  Q  N  I  Y  F  C  P  A  K  L  K  L  G  L  S  F  S  W  C  N  C  N  N  L  D  L  L  L  A  P  H  R  T  S  F  L  R  F  E  I  N  F  V  Q  V  F  C  N  S  K  V  T  I  K  D  F  T  Y  F  V  C  Q  W  F  F  S  F  I  V  I  V  S  R  L  T  R  T  Y  T  L  E  I  R  P  S  M  L  P  M  G  V  D  I  T  Q  S  H  C  F  F  Q  T  *  E  S </second_frame>
            <third_frame>   *  *  Y  L  G  V  S  T  F  I  K  L  D  S  K  I  *  L  A  A  S  K  S  K  T  Q  S  Q  S  V  *  L  S  F  R  T  Y  I  F  A  L  P  N  *  N  L  V  F  P  S  H  G  A  T  A  I  T  L  I  C  F  L  L  L  T  E  L  R  F  F  V  S  K  S  T  L  S  R  S  S  A  I  P  R  *  P  *  R  I  L  P  T  L  S  V  N  G  S  L  V  S  S  S  L  F  P  D  *  P  E  L  I  R  W  K  S  A  L  P  C  F  R  W  A  *  I  S  H  S  L  T  A  S  S  K  P  E  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0139J14.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100624" stop="100992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNIISCKQKQNPKPKCLAIIQNIYFCPAKLKLGLSFSWCNCNNLDLLLAPHRTSFLRFEINFVQVFCNSKVTIKDFTYFVCQWFFSFIVIVSRLTRTYTLEIRPSMLPMGVDITQSHCFFQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 289432 bytes spliced alignments in total
$ 91 spliced alignments have been stored
$ 3180 bytes was the average size of a spliced alignment
$ 20792 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1732 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 122 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 18:01:17
-->
