<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:48:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7341" ref_strand="+" ref_description="SGN-M7341 C2_At2g28600 [cosii_markers]">
      <seq>gccactacacaaaactgcaaaaaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaacccctaccttttattccttgttccctcccaagagaaagctgtcaaggtgcggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaagaactgtgagcccgaatttcttatttctactcctgaaagacttcaagaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctctttctgagacaggttatgttgatgcggttgaatccattgcaaaatctatttctggaaagccacaaatactggctttcaatgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgatccagtaaatgatcataacatggcttgagatatttgtgcttctaagttgtcaatgacaaacgcgacatgctgtccttgcagttgatttgccttatcatcgttacagatcctctggcgtcattcaacttaatagaagaaagttctgtaattgtaaacttcttccatatcaccggtgcagctacgtgctgctacttttcacattgtctgcaaaattctttgttatacagtagatgtattcgagatatcttagataaaaggttctcaatgttgtgttaggagaggaagttaattgtaaccccatatggtctgttgtgttctgggaatagcccaactggataattgcaggagatgcatataaccccttttttactatttgaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10443" stop="4529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10143" g_stop="9936" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="688" r_length="480" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="777" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="877" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6283" g_stop="6056" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="1105" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903">
            <donor d_prob="0.834" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5152" g_stop="4830" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1106" r_stop="1428" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1429" polyA_stop="1449"/>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M7341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1428</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10143" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6056"/>
          <exon e_start="5152" e_stop="4830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</genome_strand>
        <mrna_strand>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7341-2" ref_strand="+" ref_description="SGN-M7341-2 C2_At2g28600-2 [cosii_markers]">
      <seq>cacaaaactgcaaaaaccgcctctctcacttgaacaacagcagcagccagagcaagctatggggaaaagcgatgattccattcagagaaggaagaataagaagactagaaagaagcaagatgacaaggtctctaatcgtatcgccggaattattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttgcctacacctgaggatccattcaatgagaggcatgggaaagttgatcttgtgaagaaaaagaagaagaagcagaacctgtcgaagaagggcaagaaccctattaagaagactagtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaccattcaggatggccttcagcaggatggagccttcaatggtggagaggaaaagcctttcttcgtccatacatggggaattgaattctggaaatattttaccagtggcaaagatataattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaaggtctatcaattagcaaccccttccttttattccttgttccctcccaagagaaagctgtcaaggtacggaaaatatgcaagcctctgaaagctcttggaatacatacagtgagtctgcatcctggtgcttctatagaccaccagattcagggcctgaagaactgtgagcccgagtttcttatttctactcctgaaagacttcaagaactcctctcacatggtgccattaaaacttctgatgtttctttcctggtcatcgatggacctcttactgagacaggttatgttgatgcggttgaatccattacaaaatctatttctggaaagccacaaatactggctttcagtgattgctcaaattcttcatccaattttcttatgaagaagagtgttggagaatcaatctgtagaataccgcttgatgaaccagtaaatggtcataacatggcttgagatatttgtgcttctaagttgtcaaagacaaacggggcatgctgtccttgcagttgatttgccacagctctcttgcgaaagttgttcaaactcatcatcgttacagatcctctggcgtcattcaacttaatagaaggaagttctatagtagtaaacttcttccatatcacggtgctgcttcttttcacattcgtctgcaaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10436" stop="4724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10136" g_stop="9936" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8677" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="679" r_length="480" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8252" g_stop="8164" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="768" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7833" g_stop="7734" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="868" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6283" g_stop="6056" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="1096" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6055" i_stop="5697" i_length="359">
            <donor d_prob="0.834" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5696" g_stop="5673" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1097" r_stop="1119" r_length="23" r_score="0.500"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5672" i_stop="5306" i_length="367">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5305" g_stop="5301" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1120" r_stop="1124" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5300" i_stop="5153" i_length="148">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.855" a_score="0.56"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5152" g_stop="5026" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1250" r_length="126" r_score="0.780"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M7341-2" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>1254</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7341-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10136" e_stop="9936"/>
          <exon e_start="9156" e_stop="8677"/>
          <exon e_start="8252" e_stop="8164"/>
          <exon e_start="7833" e_stop="7734"/>
          <exon e_start="6283" e_stop="6056"/>
          <exon e_start="5696" e_stop="5673"/>
          <exon e_start="5305" e_stop="5301"/>
          <exon e_start="5152" e_stop="5026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAGGTTGGTGCAATATTCTCCAAATTTTCTCTGCTTCCATTGTTTGTAATATGTTCAACACAACATTGTGAAAGTTGTATTGATTTCTAATGGTATGGTTGCAAAATAATACGTAGCTATTTTCTTAAGCTAGTTGGACTTCTGATAGAAAGTATTTCAGCTGAAAGTCTTGATTTTTGGATAAAAGGTCCTTAGAATATCTTGTGTTGTACAGAATTTCTTTATGCATCTCCTACTTCTTTTAGTAAATTAATTAATAATCCAGAACAGTTTATCCTTCTCCGTGCATGTATTCTTCCTGTGCTTACATTATAATTTAGATAGATGTTCACTAAGCTGTAAGTTCATGTGTGAAAATTATATGGATATCTACATGTATCCTTCTACGCCTTGTGGTATCTTAATAAGCATTTCAATTGTTCATTAGGTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGGGTATGATTCCCCTGTAACTTCTCTATAATTGAGGCTATTAGTCCTCAAAGTTGATTTATTTGTCTTTCTTGAAAGATGATAATTATTTTTTTTCAGAACCTTGACTTATTGCTAACTTTCCCTGTTTAGCATATGATTTGTTCTGTTAATAACAAGATGTAGTTATTATTATGATAGATAAATAACTTCGTGTATGTGTCATTAGCTTTCCATGTTGTATTGGCTCTAGTTGCAATTAGAAACTACTTGTGTGCTTTCCAGCCTTCTGTTTTCTTTTGAAGAAATTCACTATCTTCCCTGTTTTTATATGATTACACTTTTTGTTGACAGCCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTGGTAATTTTGATTATTTTGCATTTTGCTTATGTATTAATTTTATCTTGGATCTTTTGTCCTTCTATCACTGTTTTCGTATTTAAATAATAGGAGGGAAAGGTTGAAACTGGTTTACTGTGCTCTCTAGTTAACACAAGAAGTCCTCTTTTTTCCATTTCCACACGATTTCTAATTTAAAAAATTTTGCTTTGTTATTTTGGCAAAAGTTAGTGCCTAGCAATTTTCTTATTGTCTTCTCTGTAAGGGGAAAAAAGAGAAACAGTTTATCCTCACAATGGGGTAAGCTTCAAGAAAGCAAAAGGAATTGCAGTAACAAATTGAAATAAGAACAGGTAAGTGCAAGAACCACAAACTGGCATATAGCTAAAGTAGAACGGATCTGGATAGAAAGCAGAATTTGGATAAGGTTTTCCCTGTAAATAGCGAGACAAACTGGCACTCAAATTACGTATTGCTCTGTGGAAAACAAGTAAAGGAAAACTAATATAAGTATACAATACATATTTTCCATTTTTAGTGGGTGGAGAAAATGGAAGGTTTTGAAAGTTTTTCTAAGCGACACCAATCAGGTTTAAGGGCCTCTTTGATTTGGCGAGTCTGCCTGATTTCATTTAAGTTACATTTTCAGTTAACCACATAACTTTTTAGGTGAAAGTAATTGATATTAAATTAGTTATTCTACAATCACTTGTTTCAATAATCAGAATCAAATTTACATGCAAACCAAACAGGCTCTTCATTGGGAACTTAATATCCCTCGTGGAATATCCAGGTTAAAGGCTAGGATTATGGTGGCAGTCTCCAAATGATAGGCATAGATGTGACTCTCACAATTCCTCTTCTCCTTTCCAGTCCCTACATGATAAAATATCGAAAAACAAAAAATTTCTGTAGGTCTCTTTCTCCTCTCTCGTTTGGTTTATTTCCAATTCTATGGTTGGCATTACTCTGATTTCCTCTTTCTGTTAAACTTTGATGTTTTCTTGTTATGATCCATTCAGAGTTTTCAACATTTTCGCTTGATTTTTTTCTTTTCTAATTGTGGACAGAGCATTTGGGTCCTGCCTTGTATACTGGTTTTTTAAAAAAGTTGTATCTTGCCTTTCATGTAATGGAGCTAGCATATCTTCTTTTGTACTCTTTGCATCTTCTTGATGCCGATAATGAAACAACTTACTTCATCAAAAAAAAAAAAAGTTGAATCTTGCCTTGTAATTGAGATTATTCATTGTTATCTCTTGTGGAGAAATTTAGGATGTTATACTTTTGGCAGTTATGCCACTATCATGTATTCTCTTATTTGATTATATGGTCCAGTCAGACTGGGGTTTCGAGGTTATATTCATGATCTCTGAGATGGATATGCAAGATGTATATATGTCATTTACGTCACTAGCATCATGTGTTCCGAACCATTCAGAGATTACTCATGGTAGTCTTTGTATTTCAGGTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATGGTATGTCACTATCTCTGAAACGTAAATTCTGCACTTCAGATTTTAGAGTGGAATACATTAGTCAGTTAATATATAAGCTGTCGTTTTGGTTTGTTTAATTTTGCAAACACTCTTTTTACTGTGATCTTTGGGTGCAAGAAGTTATCTACTTGTAATTTCCAACTTAATGAGAATTTGGATAGTAGCAACTTTATAGTCCTCCATGCCCATCTAACTTTACAGAACTTGTGAAAAATTGAGTTTGCTCTATGTTGTTCCCAGAGCTGCCTAATTACCTAAGCTAGCTGTCTTAATGACCGAGGGTACATCGGAGACAACCTCCAAGGTAGGGATAAGGTCTGTGTACATCCCCTCCTCAGACCCCACACGTGCGACTGTACTGGGTATGTCTTTGTTGTAGTTGTCTTAATGAATGGCTTGTAAGTTGTGATATTGGTTCAATACGAGTTATATTTGAAGTTTTGAACCTTAACAGAGGATAACTGGTAAGATAAACAAATTCAATAAGATAAGGACAAATGCAAGGAAAAAGGAAAAGAGAAAGATGGTTAAAAATATAGCAGCACCTGCACTCACCACTAGTCAAGCAGACAAGCAGTACTGATCTTTTGGCTTCACAATATAGCAGCTCCTTTGCCCCGAAAATAGTCTAGTTTGAAGGTAGAAGCAGCTAGATAGACTAGTGTAATCTATTTTACGATCGTGCTATGCAAGCAGAACATAAATATGCCAATGGATCGGCAAAAACAGTAGTTGTAGGTATCTATTAGATCTTTCTGTTATAGCTTTAAAGTACTTTTGAGTTGAGGGTAAATTTTCCTTACTTTTGACGAATGTTTTCCTTTTTATGTTCAACTTCTCGTTCATATAATCTGATATTTGCCTCCCCACTTCTTTCCACAGACAAACGCGACATGCTGTCCT-TG-CAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTAC</genome_strand>
        <mrna_strand>CACAAAACTGCAAAAACCGCCTCTCTCACTTGAACAACAGCAGCAGCCAGAGCA--AGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGACTAGAAAGAAGCAAGATGACAAGGTCTCTAATCGTATCGCCGGAATTATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTGCCTACACCTGAGGATCCATTCAATGAGAGGCATGGGAAAGTTGATCTTGTGAAGAAAAAGAAGAAGAAGCAGAACCTGTCGAAGAAGGGCAAGAACCCTATTAAGAAGACTAGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAACCATTCAGGATGGCCTTCAGCAGGATGGAGCCTTCAATGGTGGAGAGGAAAAGCCTTTCTTCGTCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATAATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTTCCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG..........................................................................................................................................................................................................................................................................................................................................CCTGAAGAACTGTGAGCCCGAGTTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCGATGGACCTCTTACTGAGACAGGTTATGTTGATGCGGTTGAATCCATTACAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAGTGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGAACCAGTAAATGGTCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAAAG.......................................................................................................................................................................................................................................................................................................................................................................A-CAAACGGGGCATGCTGTCCTTG...............................................................................................................................................................................................................................................................................................................................................................................CAGTT....................................................................................................................................................-GATTTGCCACA-GCTCTCTTGCGAAAGTTGTTCAAACTCATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGGAAGTTCTATAGTAGTAAACTTCTTCCATATCA-CGGTGCTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M809" ref_strand="+" ref_description="SGN-M809 SSR136 [est_by_read_no_qc_info]">
      <seq>cagaaaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagcaaattgcttgggttgcagcaacaactgctgatgccatatcaagaaaggagaaagaagtctatcaattagcaacccctaccttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10426" stop="8408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10126" g_stop="9936" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8708" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="639" r_length="448" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M809" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10126" e_stop="9936"/>
          <exon e_start="9156" e_stop="8708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATT</genome_strand>
        <mrna_strand>CAGAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAA-GTCTATCAATTAGCAACCCCTACCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M809-2" ref_strand="+" ref_description="SGN-M809-2 SSR136-2 [est_by_read]">
      <seq>aaccgcctctttcacttgaacaacagcagcagcagcagcagcagctatggggaaaagcgatgattccattcagagaaggaagaataagaagagtagaaagaagcaagatgacaaggtatctaatcgtatcgctggaatcattgctgctaagaaacgtcgactctccggcaaacgccgtatgtgtgagggaatgtgctatagtttacctacacctgaggatccattcaatgagaggcatggaaaagttgatcctgtaaagaagaagaagaagaagcagaaccagtcgaaaaagggcaagaaccctattaagaagaccggtttaccacaaaattctgacaaattaaaggaagagttccacatgcatgctccatctaagttcttaattctctgtttgaaaaacattcaggatgaccttcagcaggatggagccttcagtggtagagaggaaaagcctttcttcatccatacatggggaattgaattctggaaatattttaccagtggcaaagatattattggtacaaatcaagcccatgctacaactgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="10422" stop="8496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10122" g_stop="9936" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9156" g_stop="8796" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="548" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M809-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M809-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10122" e_stop="9936"/>
          <exon e_start="9156" e_stop="8796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAGGTAAATTTCACATTATATGAACTCATTTGGTCCATTTGGGTGTTGGGTTTGTTGATTTTTATTGTGAGATTTCGTTGAGTATCTGGGTATGTTGTATTGACAAATGGGTGTCGAGAAAAGATTATGGAAGTTGTGTGTTTTGAGAAGTTTTATTTTGTAAAGCTGAAGAGAGGGATTTGAGGAAGAAAGAGGAAGATTAAGGTTTTGGTGTGTTGTAATGGTGTTTTGAGGAACTGGGTATTCGTTATTTGTATGCAAAAGTAGTGTTTTGAGTAGCTTTTTTTTGTGAAGCTGTTAATGGTAAAAGGTGGAAGATTTTCGTTTTGGTATATTCAAATGGAGTTTTAAGGAATTGGGTATTCTTTATTTGTTTTCAAAATTAGTGTCTTGAGTAGTTCTTTTTTGTGAAGTTGTCAAATGTGAGGAAAGTTATTGTTTTCTTTGTTGCGTAGGAATTGAGAAATGTTTTGGAATTCATTTACTTAGTATGATCTTGTTGGTGGTGTATCTTTATGGAAGTGCATTTGTTTGATTATTGAATACTCCATGTCTTATTCATTCATGTATGCTCATACCAGTTACCATCGAAGTTTTGCACTTCTTTTTTCGTCATGTGAAACTGCCAAGAGGAAAATGCAGGACTTAGATTAAGTGGTATTGGAATGGATCTATACATTTATATATATATATGACTCCTATATTAATTTGTCGCAACCAGCCTAATGGGGCTAATTTGCGTTGTGTTAATTTTGCTGTTTTTTCTTACCTTCCATCGACAGGGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGC</genome_strand>
        <mrna_strand>AACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7994-2" ref_strand="+" ref_description="SGN-M7994-2 C2_At3g52230-2 [cosii_markers]">
      <seq>ggcggacaccacaacaacaatctccggcgactctattccgattcccgatgaccagcaaaacaattccacgaacccacttgcatcatttatctctagtgttcttcagttcttcaaaccgccgccgccatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccacgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaaccccattgtcttgtggcaggtttatgctattggagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatctgatgaagaacctcctcccagtcaagagtagactttgtactgcaacatgttagacaagagaaaacaaagaatgacacttgtggagacaggtttatgacttcatatgagtcttgtaaagtgttgaagtcacagttctggttttacaatactaaatgtaaaaacccggatcaagctttacgtcaattagccagtcagcattattttgtacaacctgtgtttcggccgttcttgctaaagcaagtggatgtgtgcatgagttattgtaaagctcatatattcattcaacttgataagctcctttttttgaatgaaaagttggtgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58439" stop="54659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58145" g_stop="57846" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54937" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="705" r_length="407" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M7994-2" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7994-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58145" e_stop="57846"/>
          <exon e_start="55352" e_stop="54937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAG-T--TCTTTTTAAATGAAAAGATAGTGCTCTTG</genome_strand>
        <mrna_strand>GGCG-GAC-ACCACAACAACAATCTCCGGCGACTCTATTCCGATTCCCGATGACCAGCAAAACAATTCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGTTCTTCAAACCGCCGCCGCCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCACGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAACCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATTGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCTGATGAAGAACCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGACAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTCATATGAGTCTTGTAAAGTGTTGAAGTCACAGTTCTGGTTTTACAATACTAAATGTAAAAACCCGGATCAAGCTTTACGTCAATTAGCCAGTCAGCATTATTTTGTACAACCTGTGTTTC-GGCC-----G----TTCTTGCTAAAGCAAGTGGATGTGTGCATGAGTTATTGT-AAAGCTCATATA-TTCATTCAACTTGATAAGCTCCTTTTTTTGAATGAAAAGTTGGTGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7994" ref_strand="+" ref_description="SGN-M7994 C2_At3g52230 [cosii_markers]">
      <seq>gcacgagaaaacctccaaaaacttagctatggcggacaccacaacaacaacaacaatctccggtgactctattacggttaccgatgaccagaaaaacaatcccacgaacccacttgcatcatttatctctagtgttcttcagcttttcaaaccgccgccggcatctagtaagaagattgaacccaccgctgctacttcagacctcaaaccaattgcttcagctgaaaaagaggagaaagctgctgtagtgaagtttccgcgacaggatttgccttcgttgaagctcgaaacagaaggggctgaacctaatacaaatcccattgtcttgtggcaggtttatgctatctgagggttctttgtcttaaggtgggcatggtcaagatggaacgagcgtcgtggaaacaggaagccatccgatgaagagcctcctcccagtcaagagtagactttgtactgcaacatgttagaaaagagaaaacaaagaatgacacttgtggagacaggtttatgactttatttgagtcttgtaaagtgttgaaatcacagttctggttttacagtactaaatgtaaaaacccgaatcaagctttacgtcaatttgccagtcagcatcattttgtacagcctgtgtttcagcccttgttgataattcttgctaaagcaagtgnatgcgtgcatgagctatactgtaagctcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="58472" stop="54687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58179" g_stop="57846" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55352" g_stop="54987" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="700" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M7994" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58179" e_stop="57846"/>
          <exon e_start="55352" e_stop="54987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAGGTATTATATTACTTATGCTCTGTTTCATTTTTGGAATTCAGTTTCATTTTATTAAGTCGTTTTAATTAGTTTTTGAGCTACTATTTGGTATTTGTGATTTTGGTGCGTGTATATATCAAATTAACATGATAAACTCCATATACTCCACCATCCCTGAACGTCATTTGTGTGGTTACATTGGGTATGTTGTTGTTGAAATTCCGTAGACCCACACCTTAGCTAGACCTCAGTTGTGGGATTATACTGGGTATGTTGTTGTTTGTGGTTGAAATTCCGTACAACTCGCCATCCTGAGACCTCATTTGTGAGATTATATTGAGTATGTGGTTGAAATTCCATACAGCCCACCATCTCCAGAACTCATTTCTGGGATTACATTTGATATGTTGTTGTTGAAATTCCGTACATCCCACCTCTAGTGATGCCACTTGTGGGATTACTCAGGATATATTGTTGTTTGTGGTTGAAATTCCGTAGACCCCACTGTCAGTAGACCCCGTATGTGGGATTATACTGGGTATGCTGTTGTTTTGTTGTTGGAATTCCATACACCCCACTGTCCCTGAACCCACTTGTGGGATTACATTGTGTGTGTTGTTATTGTTGTTGAAAATCCCTATACACCACCTCGCTAGACTCAACTTGTGGGATTAAATTGGGTATGTGGTTGTTGAAATTCCATACGTCCCATGCAGACTAGGTATGTTGATAAAATTCCTTGTGGAATTAATCGAATTGTTCTTTTGAATTCCTTCTGCTTATTAGGAGACGATCTTTTTTGCTATGTGAAATCTGATTGTTTGATTCTTTCACAGAAGCATATAGTTGACTTATTCAATGTAGAATATTACTCAGAAACAGGTGATAAAGATGACCCCCATGGTTTGCTATGTTATATAGCTAAGGTCAACTATAGTTGTGAAATGTATTGGCGTACAACTTTTCTGTTACTGGCTAAAGCATAGTTCTGCAAATGGAAGGATGGATAATGGTGCAAGGTGAGTAGAGACTATTTGGGTAAAGGCCCTTCATGTCTTGAATTAGAGAAGAGTTTTCGTTGACCGGCTCAAACTTAATTAAGTGGATTGAAGTGTGTAAACAGTTACTAAAAAGTCGTGGTAAGAATTAAAAACTCCAAAAATTATTAAAGAAACCATTGTTTTGGATTTTCAAATTTGAATTTTCTCTCCACTCCTCTTCATCTTCTCATCCTATATTTGGTTGGTGAAAAATATTTTCGAACAAATGGAGGGGATTCTCCAGTAATTCCAACAACTTTGCTACTTACTGAAGTTTTCAAACAAGCTCCATCAAAGAGTTATTGGACAACTGTTGAAGTTGTTGGGATGTGGTCTCAAAGAGGAGTTCTGTATTACCTTCTGGTTGTTGTGAGATTTCTATTATTCTGGGTTTAAGATAAACGCGGAGGCCGATGAGATGGGGGAAAGGAGCTTTATGTAAATAAAAAAACTTGTTGGTTTTTAAATATGTATCATTAATACTAATTAAAGGAGTCACTTGTAGCAAAGAACTTGAGTCACTCTTCCTTAAAAAGAAGACTCAAAAGTTGTCCACAACAGTTGTTGGTCAACTACTAAATTTGTTCCTGACAACTTCATATTTGTCTGCACCAGTTGTTGGACTACTACGTAATTCGTTCCAACACTCATTAGTAGTTATTGGAACACTTTGGACAACTTTAGTAAGTTGTTGGATTTACTGGATAATCCAACAACTTTTTCGTTTTCTTTCAATTGTTGGACTACTACATAATTCGTTTCTTTCAATTTTTTATTTCCTTGTAAGATCCTTGGCCTTTTGTAACTACCTACTGCCAGTATCAGTACCGTACTGATGAATACAATGTTACTTCTCTTAAAATGATAATAATAGTAGTATCAGATATCATAGTTCATGTATGGAGTAACTGAATGAGTACTGTGGAACCATCTGTTACATCTATTACATGTTTCAGAACATCAGCTGTATAATTTAGTAAGATGTAAATGAATCATCTTGCTGTGGATATATATACACATTAAAATACGTAAGGATGAAGTGGAAACAAGATTTTGTATTCTATATTGACACAAAGGCAGAGAAAAAAGGAAGGAAGAGAAATAGAGGAAGTGGGTTATAGTAAGTGTTCTTTCTCCTATATGCATGGACACAACTTGTTTATGCTTTTGGGGTTTATTCCATATCTGTCCTGATCTGTGTTCGATGACCAAATTTTCTAGATTTTATCTTTCCTTTTTTCTGTTTGTGTAGTTTCAAATTTTATTTGTCTCGATATAGTGTTCTGATGAGAAAATAAGTAGGTAAATGGATTCTGTAACCAAAAAAAGGAAAAGGAGGAAACATTGAACAATAATCTCTTTGACGAGCAAAATGCGGTGCCCCTACATATCTTAAGATTTCGCTTTTTTCCCTGTCATATTCTGCCTTATCTGCTCTTACCACCTTAATCTTCTGCACTGTTTCTGAAATCAGGTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATAT</genome_strand>
        <mrna_strand>GCACGAGAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATGCTATCTGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGNATGCGTGCATGAGCTATACTGTAAGCTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8575-2" ref_strand="+" ref_description="SGN-M8575-2 C2_At5g04500-2 [cosii_markers]">
      <seq>taagttggtgccctcacaatgttggaaagaggagtgacgcttcgttcgattgggaaagatcaagcttgttatctaatagaatgaggctattttgtagtcggttgaacagagcaagctcgtctctccgtgccagaataaagcctaaaacatgcagtggaggattggttcttgctgtaatctttatagtcactgtggtgttaatgtgcactggagttaaatacatctatggaggcagcggtgcagaggaagcttacccgttaaatggtcagtactctcagttcactttattaacaatgacctacgatgctcggctctggaacttgaaaatgtatgtcaagcattactcaaggtgttcttcagtacgtgagatcgttgtagtgtggaataaaggccaacctccagaactgagtgagctcgattcagcagtgccagtgaggataagagtagagaaacagatctcactaaacaatcgattcaaagtagatcctttgataaagacacgagcagttcttgaacttgatgatgacattatgatgccttgtgatgatgttgaaaggggatttaaggtatggcgtgagtaccctgaacgcatcgttgggttttacccccggcttgcagatggaaacccattgaaatatagagctgagaatcatgctcgcgagcacaatggatacaacatgattcttacaggagctgccttcatggacagcaaaatggctttcgaaaagtactggagcaatgaagctgcagcaggaagggccgtggtggacaagcttttcaactgtgaagatgtgttgctaaactacttgtatgcaaacgcgagctcctccagtacagttgaatacgtaaaaccagcatgggcaatcgatacttcaaagttttctggcgttgcaattagccggaatacacagactcactatggactcagaagcagttgcctccaaaagttctcagaaatgtatggaagtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0143O06-8yjbq/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0143O06.1" temp_strand="-" temp_description="C11HBa0143O06.1  AC220058.1 htgs_phase:3 submitted_to_sgn_as:gi|170933588|gb|AC220058.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0143O06, complete sequence">
        <position start="132613" stop="131403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132613" g_stop="131703" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="971" r_length="911" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0143O06.1" gen_strand="-" ref_id="SGN-M8575-2" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0143O06.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8575-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132613" e_stop="131703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGAACTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</genome_strand>
        <mrna_strand>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGATCTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10143" PGL_stop="4830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10143" e_stop="9936"/>
            <exon e_start="9156" e_stop="8677"/>
            <exon e_start="8252" e_stop="8164"/>
            <exon e_start="7833" e_stop="7734"/>
            <exon e_start="6283" e_stop="6056"/>
            <exon e_start="5152" e_stop="4830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.834" acc_prob="0.855" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10143" e_stop="9936" e_length="208"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9156" e_stop="8677" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8252" e_stop="8164" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.951">
            <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7833" e_stop="7734" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.962">
            <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6283" e_stop="6056" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.855">
            <gDNA_intron_boundary i_start="6055" i_stop="5153" i_length="903"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5152" e_stop="4830" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10143" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6056"/>
              <exon start="5152" stop="4830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9936"/>
              <exon start="9156" stop="8708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10122" stop="9936"/>
              <exon start="9156" stop="8796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M809-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACTACACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG : GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG : GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG : CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG : GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG : ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTACGTGCTGCTACTTTTCACATTGTCTGCAAAATTCTTTGTTATACAGTAGATGTATTCGAGATATCTTAGATAAAAGGTTCTCAATGTTGTGTTAGGAGAGGAAGTTAATTGTAACCCCATATGGTCTGTTGTGTTCTGGGAATAGCCCAACTGGATAATTGCAGGAGATGCATATAACCCCTTTTTTACTATTTGAA</gDNA_template>
            <first_frame> A  T  T  Q  N  C  K  N  R  L  F  H  L  N  N  S  S  S  S  S  S  S  Y  G  E  K  R  *  F  H  S  E  K  E  E  *  E  E  *  K  E  A  R  *  Q  G  I  *  S  Y  R  W  N  H  C  C  *  E  T  S  T  L  R  Q  T  P  Y  V  *   : G  N  V  L  *  F  T  Y  T  *  G  S  I  Q  *  E  A  W  K  S  *  S  C  K  E  E  E  E  E  A  E  P  V  E  K  G  Q  E  P  Y  *  E  D  R  F  T  T  K  F  *  Q  I  K  G  R  V  P  H  A  C  S  I  *  V  L  N  S  L  F  E  K  H  S  G  *  P  S  A  G  W  S  L  Q  W  *  R  G  K  A  F  L  H  P  Y  M  G  N  *  I  L  E  I  F  Y  Q  W  Q  R  Y  Y  W  Y  K  S  S  P  C  Y  N  *  A  N  C  L  G  C  S  N  N  C  *  C  H  I  K  K  G  E  R  R  S  I  N  *  Q  P  L  P  F  I  P  C  S  L  P  R  E  S  C  Q   : G  A  E  N  M  Q  A  S  E  S  S  W  N  T  Y  S  E  S  A  S  W  C  F  Y  R  P  P  D  S  G  :  P  E  E  L  *  A  R  I  S  Y  F  Y  S  *  K  T  S  R  T  P  L  T  W  C  H  *  N  F  *  C  F  F  P   : G  H  R  W  T  S  F  *  D  R  L  C  *  C  G  *  I  H  C  K  I  Y  F  W  K  A  T  N  T  G  F  Q  *  L  L  K  F  F  I  Q  F  S  Y  E  E  E  C  W  R  I  N  L  *  N  T  A  *  *  S  S  K  *  S  *  H  G  L  R  Y  L  C  F  *  V  V  N   : D  K  R  D  M  L  S  L  Q  L  I  C  L  I  I  V  T  D  P  L  A  S  F  N  L  I  E  E  S  S  V  I  V  N  F  F  H  I  T  G  A  A  T  C  C  Y  F  S  H  C  L  Q  N  S  L  L  Y  S  R  C  I  R  D  I  L  D  K  R  F  S  M  L  C  *  E  R  K  L  I  V  T  P  Y  G  L  L  C  S  G  N  S  P  T  G  *  L  Q  E  M  H  I  T  P  F  L  L  F  E </first_frame>
            <second_frame>  P  L  H  K  T  A  K  T  A  S  F  T  *  T  T  A  A  A  A  A  A  A  M  G  K  S  D  D  S  I  Q  R  R  K  N  K  K  S  R  K  K  Q  D  D  K  V  S  N  R  I  A  G  I  I  A  A  K  K  R  R  L  S  G  K  R  R  M  C  E  :  G  M  C  Y  S  L  P  T  P  E  D  P  F  N  E  R  H  G  K  V  D  P  V  K  K  K  K  K  K  Q  N  Q  S  K  K  G  K  N  P  I  K  K  T  G  L  P  Q  N  S  D  K  L  K  E  E  F  H  M  H  A  P  S  K  F  L  I  L  C  L  K  N  I  Q  D  D  L  Q  Q  D  G  A  F  S  G  R  E  E  K  P  F  F  I  H  T  W  G  I  E  F  W  K  Y  F  T  S  G  K  D  I  I  G  T  N  Q  A  H  A  T  T  E  Q  I  A  W  V  A  A  T  T  A  D  A  I  S  R  K  E  K  E  G  L  S  I  S  N  P  Y  L  L  F  L  V  P  S  Q  E  K  A  V  K  :  V  R  K  I  C  K  P  L  K  A  L  G  I  H  T  V  S  L  H  P  G  A  S  I  D  H  Q  I  Q  G :   L  K  N  C  E  P  E  F  L  I  S  T  P  E  R  L  Q  E  L  L  S  H  G  A  I  K  T  S  D  V  S  F  L  :  V  I  D  G  P  L  S  E  T  G  Y  V  D  A  V  E  S  I  A  K  S  I  S  G  K  P  Q  I  L  A  F  N  D  C  S  N  S  S  S  N  F  L  M  K  K  S  V  G  E  S  I  C  R  I  P  L  D  D  P  V  N  D  H  N  M  A  *  D  I  C  A  S  K  L  S  M  :  T  N  A  T  C  C  P  C  S  *  F  A  L  S  S  L  Q  I  L  W  R  H  S  T  *  *  K  K  V  L  *  L  *  T  S  S  I  S  P  V  Q  L  R  A  A  T  F  H  I  V  C  K  I  L  C  Y  T  V  D  V  F  E  I  S  *  I  K  G  S  Q  C  C  V  R  R  G  S  *  L  *  P  H  M  V  C  C  V  L  G  I  A  Q  L  D  N  C  R  R  C  I  *  P  L  F  Y  Y  L   </second_frame>
            <third_frame>   H  Y  T  K  L  Q  K  P  P  L  S  L  E  Q  Q  Q  Q  Q  Q  Q  Q  L  W  G  K  A  M  I  P  F  R  E  G  R  I  R  R  V  E  R  S  K  M  T  R  Y  L  I  V  S  L  E  S  L  L  L  R  N  V  D  S  P  A  N  A  V  C  V  R :   E  C  A  I  V  Y  L  H  L  R  I  H  S  M  R  G  M  E  K  L  I  L  *  R  R  R  R  R  S  R  T  S  R  K  R  A  R  T  L  L  R  R  P  V  Y  H  K  I  L  T  N  *  R  K  S  S  T  C  M  L  H  L  S  S  *  F  S  V  *  K  T  F  R  M  T  F  S  R  M  E  P  S  V  V  E  R  K  S  L  S  S  S  I  H  G  E  L  N  S  G  N  I  L  P  V  A  K  I  L  L  V  Q  I  K  P  M  L  Q  L  S  K  L  L  G  L  Q  Q  Q  L  L  M  P  Y  Q  E  R  R  K  K  V  Y  Q  L  A  T  P  T  F  Y  S  L  F  P  P  K  R  K  L  S  R :   C  G  K  Y  A  S  L  *  K  L  L  E  Y  I  Q  *  V  C  I  L  V  L  L  *  T  T  R  F  R   : A  *  R  T  V  S  P  N  F  L  F  L  L  L  K  D  F  K  N  S  S  H  M  V  P  L  K  L  L  M  F  L  S  W :   S  S  M  D  L  F  L  R  Q  V  M  L  M  R  L  N  P  L  Q  N  L  F  L  E  S  H  K  Y  W  L  S  M  I  A  Q  I  L  H  P  I  F  L  *  R  R  V  L  E  N  Q  S  V  E  Y  R  L  M  I  Q  *  M  I  I  T  W  L  E  I  F  V  L  L  S  C  Q  * :   Q  T  R  H  A  V  L  A  V  D  L  P  Y  H  R  Y  R  S  S  G  V  I  Q  L  N  R  R  K  F  C  N  C  K  L  L  P  Y  H  R  C  S  Y  V  L  L  L  F  T  L  S  A  K  F  F  V  I  Q  *  M  Y  S  R  Y  L  R  *  K  V  L  N  V  V  L  G  E  E  V  N  C  N  P  I  W  S  V  V  F  W  E  *  P  N  W  I  I  A  G  D  A  Y  N  P  F  F  T  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10103" stop="9936"/>
                    <exon start="9156" stop="8677"/>
                    <exon start="8252" stop="8164"/>
                    <exon start="7833" stop="7734"/>
                    <exon start="6283" stop="6083"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTAAAAAAAMGKSDDSIQRRKNKKSRKKQDDKVSNRIAGIIAAKKRRLSGKRRMCEGMCYSLPTPEDPFNERHGKVDPVKKKKKKQNQSKKGKNPIKKTGLPQNSDKLKEEFHMHAPSKFLILCLKNIQDDLQQDGAFSGREEKPFFIHTWGIEFWKYFTSGKDIIGTNQAHATTEQIAWVAATTADAISRKEKEGLSISNPYLLFLVPSQEKAVKVRKICKPLKALGIHTVSLHPGASIDHQIQGLKNCEPEFLISTPERLQELLSHGAIKTSDVSFLVIDGPLSETGYVDAVESIAKSISGKPQILAFNDCSNSSSNFLMKKSVGESICRIPLDDPVNDHNMA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6065" stop="6056"/>
                    <exon start="5152" stop="4932"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVNDKRDMLSLQLICLIIVTDPLASFNLIEESSVIVNFFHITGAATCCYFSHCLQNSLLYSRCIRDILDKRFSMLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10136" e_stop="9936"/>
            <exon e_start="9156" e_stop="8677"/>
            <exon e_start="8252" e_stop="8164"/>
            <exon e_start="7833" e_stop="7734"/>
            <exon e_start="6283" e_stop="6056"/>
            <exon e_start="5696" e_stop="5673"/>
            <exon e_start="5305" e_stop="5301"/>
            <exon e_start="5152" e_stop="5026"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="0.967"/>
          <exon-intron don_prob="0.882" acc_prob="0.951" e_score="0.989"/>
          <exon-intron don_prob="0.927" acc_prob="0.962" e_score="0.990"/>
          <exon-intron don_prob="0.834" acc_prob="0.000" e_score="0.974"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="0.905" acc_prob="0.855" e_score="0.800"/>
          <exon-only e_score="0.780"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10136" e_stop="9936" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="9935" i_stop="9157" i_length="779"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="9156" e_stop="8677" e_length="480"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="8676" i_stop="8253" i_length="424"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="8252" e_stop="8164" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.951">
            <gDNA_intron_boundary i_start="8163" i_stop="7834" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="7833" e_stop="7734" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.927" acc_prob="0.962">
            <gDNA_intron_boundary i_start="7733" i_stop="6284" i_length="1450"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="6283" e_stop="6056" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.834" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6055" i_stop="5697" i_length="359"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="5696" e_stop="5673" e_length="24"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5672" i_stop="5306" i_length="367"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="5305" e_stop="5301" e_length="5"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="0.855">
            <gDNA_intron_boundary i_start="5300" i_stop="5153" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="0.780">
            <gDNA_exon_boundary e_start="5152" e_stop="5026" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10136" stop="9936"/>
              <exon start="9156" stop="8677"/>
              <exon start="8252" stop="8164"/>
              <exon start="7833" stop="7734"/>
              <exon start="6283" stop="6056"/>
              <exon start="5696" stop="5673"/>
              <exon start="5305" stop="5301"/>
              <exon start="5152" stop="5026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7341-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9936"/>
              <exon start="9156" stop="8708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10122" stop="9936"/>
              <exon start="9156" stop="8796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M809-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAACTGCAAAAACCGCCTCTTTCACTTGAACAACAGCAGCAGCAGCAGCAGCAGCTATGGGGAAAAGCGATGATTCCATTCAGAGAAGGAAGAATAAGAAGAGTAGAAAGAAGCAAGATGACAAGGTATCTAATCGTATCGCTGGAATCATTGCTGCTAAGAAACGTCGACTCTCCGGCAAACGCCGTATGTGTGAG : GGAATGTGCTATAGTTTACCTACACCTGAGGATCCATTCAATGAGAGGCATGGAAAAGTTGATCCTGTAAAGAAGAAGAAGAAGAAGCAGAACCAGTCGAAAAAGGGCAAGAACCCTATTAAGAAGACCGGTTTACCACAAAATTCTGACAAATTAAAGGAAGAGTTCCACATGCATGCTCCATCTAAGTTCTTAATTCTCTGTTTGAAAAACATTCAGGATGACCTTCAGCAGGATGGAGCCTTCAGTGGTAGAGAGGAAAAGCCTTTCTTCATCCATACATGGGGAATTGAATTCTGGAAATATTTTACCAGTGGCAAAGATATTATTGGTACAAATCAAGCCCATGCTACAACTGAGCAAATTGCTTGGGTTGCAGCAACAACTGCTGATGCCATATCAAGAAAGGAGAAAGAAGGTCTATCAATTAGCAACCCCTACCTTTTATTCCTTGTTCCCTCCCAAGAGAAAGCTGTCAAG : GTGCGGAAAATATGCAAGCCTCTGAAAGCTCTTGGAATACATACAGTGAGTCTGCATCCTGGTGCTTCTATAGACCACCAGATTCAGGG : CCTGAAGAACTGTGAGCCCGAATTTCTTATTTCTACTCCTGAAAGACTTCAAGAACTCCTCTCACATGGTGCCATTAAAACTTCTGATGTTTCTTTCCTG : GTCATCGATGGACCTCTTTCTGAGACAGGTTATGTTGATGCGGTTGAATCCATTGCAAAATCTATTTCTGGAAAGCCACAAATACTGGCTTTCAATGATTGCTCAAATTCTTCATCCAATTTTCTTATGAAGAAGAGTGTTGGAGAATCAATCTGTAGAATACCGCTTGATGATCCAGTAAATGATCATAACATGGCTTGAGATATTTGTGCTTCTAAGTTGTCAATG : ACCCCACACGTGCGACTGTACTGG : TAGTT : ACAAACGCGACATGCTGTCCTTGCAGTTGATTTGCCTTATCATCGTTACAGATCCTCTGGCGTCATTCAACTTAATAGAAGAAAGTTCTGTAATTGTAAACTTCTTCCATATCACCGGTGCAGCTAC</gDNA_template>
            <first_frame> H  K  T  A  K  T  A  S  F  T  *  T  T  A  A  A  A  A  A  A  M  G  K  S  D  D  S  I  Q  R  R  K  N  K  K  S  R  K  K  Q  D  D  K  V  S  N  R  I  A  G  I  I  A  A  K  K  R  R  L  S  G  K  R  R  M  C  E  :  G  M  C  Y  S  L  P  T  P  E  D  P  F  N  E  R  H  G  K  V  D  P  V  K  K  K  K  K  K  Q  N  Q  S  K  K  G  K  N  P  I  K  K  T  G  L  P  Q  N  S  D  K  L  K  E  E  F  H  M  H  A  P  S  K  F  L  I  L  C  L  K  N  I  Q  D  D  L  Q  Q  D  G  A  F  S  G  R  E  E  K  P  F  F  I  H  T  W  G  I  E  F  W  K  Y  F  T  S  G  K  D  I  I  G  T  N  Q  A  H  A  T  T  E  Q  I  A  W  V  A  A  T  T  A  D  A  I  S  R  K  E  K  E  G  L  S  I  S  N  P  Y  L  L  F  L  V  P  S  Q  E  K  A  V  K  :  V  R  K  I  C  K  P  L  K  A  L  G  I  H  T  V  S  L  H  P  G  A  S  I  D  H  Q  I  Q  G :   L  K  N  C  E  P  E  F  L  I  S  T  P  E  R  L  Q  E  L  L  S  H  G  A  I  K  T  S  D  V  S  F  L  :  V  I  D  G  P  L  S  E  T  G  Y  V  D  A  V  E  S  I  A  K  S  I  S  G  K  P  Q  I  L  A  F  N  D  C  S  N  S  S  S  N  F  L  M  K  K  S  V  G  E  S  I  C  R  I  P  L  D  D  P  V  N  D  H  N  M  A  *  D  I  C  A  S  K  L  S  M  :  T  P  H  V  R  L  Y  W  :  *  L :   Q  T  R  H  A  V  L  A  V  D  L  P  Y  H  R  Y  R  S  S  G  V  I  Q  L  N  R  R  K  F  C  N  C  K  L  L  P  Y  H  R  C  S  Y </first_frame>
            <second_frame>  T  K  L  Q  K  P  P  L  S  L  E  Q  Q  Q  Q  Q  Q  Q  Q  L  W  G  K  A  M  I  P  F  R  E  G  R  I  R  R  V  E  R  S  K  M  T  R  Y  L  I  V  S  L  E  S  L  L  L  R  N  V  D  S  P  A  N  A  V  C  V  R :   E  C  A  I  V  Y  L  H  L  R  I  H  S  M  R  G  M  E  K  L  I  L  *  R  R  R  R  R  S  R  T  S  R  K  R  A  R  T  L  L  R  R  P  V  Y  H  K  I  L  T  N  *  R  K  S  S  T  C  M  L  H  L  S  S  *  F  S  V  *  K  T  F  R  M  T  F  S  R  M  E  P  S  V  V  E  R  K  S  L  S  S  S  I  H  G  E  L  N  S  G  N  I  L  P  V  A  K  I  L  L  V  Q  I  K  P  M  L  Q  L  S  K  L  L  G  L  Q  Q  Q  L  L  M  P  Y  Q  E  R  R  K  K  V  Y  Q  L  A  T  P  T  F  Y  S  L  F  P  P  K  R  K  L  S  R :   C  G  K  Y  A  S  L  *  K  L  L  E  Y  I  Q  *  V  C  I  L  V  L  L  *  T  T  R  F  R   : A  *  R  T  V  S  P  N  F  L  F  L  L  L  K  D  F  K  N  S  S  H  M  V  P  L  K  L  L  M  F  L  S  W :   S  S  M  D  L  F  L  R  Q  V  M  L  M  R  L  N  P  L  Q  N  L  F  L  E  S  H  K  Y  W  L  S  M  I  A  Q  I  L  H  P  I  F  L  *  R  R  V  L  E  N  Q  S  V  E  Y  R  L  M  I  Q  *  M  I  I  T  W  L  E  I  F  V  L  L  S  C  Q  * :   P  H  T  C  D  C  T  G :   S   : Y  K  R  D  M  L  S  L  Q  L  I  C  L  I  I  V  T  D  P  L  A  S  F  N  L  I  E  E  S  S  V  I  V  N  F  F  H  I  T  G  A  A   </second_frame>
            <third_frame>   Q  N  C  K  N  R  L  F  H  L  N  N  S  S  S  S  S  S  S  Y  G  E  K  R  *  F  H  S  E  K  E  E  *  E  E  *  K  E  A  R  *  Q  G  I  *  S  Y  R  W  N  H  C  C  *  E  T  S  T  L  R  Q  T  P  Y  V  *   : G  N  V  L  *  F  T  Y  T  *  G  S  I  Q  *  E  A  W  K  S  *  S  C  K  E  E  E  E  E  A  E  P  V  E  K  G  Q  E  P  Y  *  E  D  R  F  T  T  K  F  *  Q  I  K  G  R  V  P  H  A  C  S  I  *  V  L  N  S  L  F  E  K  H  S  G  *  P  S  A  G  W  S  L  Q  W  *  R  G  K  A  F  L  H  P  Y  M  G  N  *  I  L  E  I  F  Y  Q  W  Q  R  Y  Y  W  Y  K  S  S  P  C  Y  N  *  A  N  C  L  G  C  S  N  N  C  *  C  H  I  K  K  G  E  R  R  S  I  N  *  Q  P  L  P  F  I  P  C  S  L  P  R  E  S  C  Q   : G  A  E  N  M  Q  A  S  E  S  S  W  N  T  Y  S  E  S  A  S  W  C  F  Y  R  P  P  D  S  G  :  P  E  E  L  *  A  R  I  S  Y  F  Y  S  *  K  T  S  R  T  P  L  T  W  C  H  *  N  F  *  C  F  F  P   : G  H  R  W  T  S  F  *  D  R  L  C  *  C  G  *  I  H  C  K  I  Y  F  W  K  A  T  N  T  G  F  Q  *  L  L  K  F  F  I  Q  F  S  Y  E  E  E  C  W  R  I  N  L  *  N  T  A  *  *  S  S  K  *  S  *  H  G  L  R  Y  L  C  F  *  V  V  N   : D  P  T  R  A  T  V  L   : V  V  :  T  N  A  T  C  C  P  C  S  *  F  A  L  S  S  L  Q  I  L  W  R  H  S  T  *  *  K  K  V  L  *  L  *  T  S  S  I  S  P  V  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10103" stop="9936"/>
                    <exon start="9156" stop="8677"/>
                    <exon start="8252" stop="8164"/>
                    <exon start="7833" stop="7734"/>
                    <exon start="6283" stop="6083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1035</number_coding_nucleotides>
                  <number_encoded_amino_acids>345</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTAAAAAAAMGKSDDSIQRRKNKKSRKKQDDKVSNRIAGIIAAKKRRLSGKRRMCEGMCYSLPTPEDPFNERHGKVDPVKKKKKKQNQSKKGKNPIKKTGLPQNSDKLKEEFHMHAPSKFLILCLKNIQDDLQQDGAFSGREEKPFFIHTWGIEFWKYFTSGKDIIGTNQAHATTEQIAWVAATTADAISRKEKEGLSISNPYLLFLVPSQEKAVKVRKICKPLKALGIHTVSLHPGASIDHQIQGLKNCEPEFLISTPERLQELLSHGAIKTSDVSFLVIDGPLSETGYVDAVESIAKSISGKPQILAFNDCSNSSSNFLMKKSVGESICRIPLDDPVNDHNMA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="58179" PGL_stop="54937"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58179" e_stop="57846"/>
            <exon e_start="55352" e_stop="54937"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="0.982"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="58179" e_stop="57846" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="57845" i_stop="55353" i_length="2493"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="55352" e_stop="54937" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58179" stop="57846"/>
              <exon start="55352" stop="54987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58145" stop="57846"/>
              <exon start="55352" stop="54937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7994-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCAAAAACCTCCAAAAACTTAGCTATGGCGGACACCACAACAACAACAACAATCTCCGGTGACTCTATTACGGTTACCGATGACCAGAAAAACAATCCCACGAACCCACTTGCATCATTTATCTCTAGTGTTCTTCAGCTTTTCAAACCGCCGCCGGCATCTAGTAAGAAGATTGAACCCACCGCTGCTACTTCAGACCTCAAACCAATTGCTTCAGCTGAAAAAGAGGAGAAAGCTGCTGTAGTGAAGTTTCCGCGACAGGATTTGCCTTCGTTGAAGCTCGAAACAGAAGGGGCTGAACCTAATACAAATCCCATTGTCTTGTGGCAG : GTTTATGCTATCGGAGGGTTCTTTGTCTTAAGGTGGGCATGGTCAAGATGGAACGAGCGTCGTGGAAACAGGAAGCCATCCGATGAAGAGCCTCCTCCCAGTCAAGAGTAGACTTTGTACTGCAACATGTTAGAAAAGAGAAAACAAAGAATGACACTTGTGGAGACAGGTTTATGACTTTATTTGAGTCTTGTAAAGTGTTGAAATCACAGTTCTGGTTTTACAGTACTAAATGTAAAAACCCGAATCAAGCTTTACGTCAATTTGCCAGTCAGCATCATTTTGTACAGCCTGTGTTTCAGCCCTTGTTGATAATTCTTGCTAAAGCAAGTGGATGCGTGCATGAGCTATACTGTAAGCTCATATATTTCATTCAACTTGATAAGTTCTTTTTAAATGAAAAGATAGTGCTCTTG</gDNA_template>
            <first_frame> K  V  K  N  L  Q  K  L  S  Y  G  G  H  H  N  N  N  N  N  L  R  *  L  Y  Y  G  Y  R  *  P  E  K  Q  S  H  E  P  T  C  I  I  Y  L  *  C  S  S  A  F  Q  T  A  A  G  I  *  *  E  D  *  T  H  R  C  Y  F  R  P  Q  T  N  C  F  S  *  K  R  G  E  S  C  C  S  E  V  S  A  T  G  F  A  F  V  E  A  R  N  R  R  G  *  T  *  Y  K  S  H  C  L  V  A   : G  L  C  Y  R  R  V  L  C  L  K  V  G  M  V  K  M  E  R  A  S  W  K  Q  E  A  I  R  *  R  A  S  S  Q  S  R  V  D  F  V  L  Q  H  V  R  K  E  K  T  K  N  D  T  C  G  D  R  F  M  T  L  F  E  S  C  K  V  L  K  S  Q  F  W  F  Y  S  T  K  C  K  N  P  N  Q  A  L  R  Q  F  A  S  Q  H  H  F  V  Q  P  V  F  Q  P  L  L  I  I  L  A  K  A  S  G  C  V  H  E  L  Y  C  K  L  I  Y  F  I  Q  L  D  K  F  F  L  N  E  K  I  V  L  L </first_frame>
            <second_frame>  K  S  K  T  S  K  N  L  A  M  A  D  T  T  T  T  T  T  I  S  G  D  S  I  T  V  T  D  D  Q  K  N  N  P  T  N  P  L  A  S  F  I  S  S  V  L  Q  L  F  K  P  P  P  A  S  S  K  K  I  E  P  T  A  A  T  S  D  L  K  P  I  A  S  A  E  K  E  E  K  A  A  V  V  K  F  P  R  Q  D  L  P  S  L  K  L  E  T  E  G  A  E  P  N  T  N  P  I  V  L  W  Q  :  V  Y  A  I  G  G  F  F  V  L  R  W  A  W  S  R  W  N  E  R  R  G  N  R  K  P  S  D  E  E  P  P  P  S  Q  E  *  T  L  Y  C  N  M  L  E  K  R  K  Q  R  M  T  L  V  E  T  G  L  *  L  Y  L  S  L  V  K  C  *  N  H  S  S  G  F  T  V  L  N  V  K  T  R  I  K  L  Y  V  N  L  P  V  S  I  I  L  Y  S  L  C  F  S  P  C  *  *  F  L  L  K  Q  V  D  A  C  M  S  Y  T  V  S  S  Y  I  S  F  N  L  I  S  S  F  *  M  K  R  *  C  S   </second_frame>
            <third_frame>   S  Q  K  P  P  K  T  *  L  W  R  T  P  Q  Q  Q  Q  Q  S  P  V  T  L  L  R  L  P  M  T  R  K  T  I  P  R  T  H  L  H  H  L  S  L  V  F  F  S  F  S  N  R  R  R  H  L  V  R  R  L  N  P  P  L  L  L  Q  T  S  N  Q  L  L  Q  L  K  K  R  R  K  L  L  *  *  S  F  R  D  R  I  C  L  R  *  S  S  K  Q  K  G  L  N  L  I  Q  I  P  L  S  C  G  R :   F  M  L  S  E  G  S  L  S  *  G  G  H  G  Q  D  G  T  S  V  V  E  T  G  S  H  P  M  K  S  L  L  P  V  K  S  R  L  C  T  A  T  C  *  K  R  E  N  K  E  *  H  L  W  R  Q  V  Y  D  F  I  *  V  L  *  S  V  E  I  T  V  L  V  L  Q  Y  *  M  *  K  P  E  S  S  F  T  S  I  C  Q  S  A  S  F  C  T  A  C  V  S  A  L  V  D  N  S  C  *  S  K  W  M  R  A  *  A  I  L  *  A  H  I  F  H  S  T  *  *  V  L  F  K  *  K  D  S  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58178" stop="57846"/>
                    <exon start="55352" stop="55242"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKTSKNLAMADTTTTTTISGDSITVTDDQKNNPTNPLASFISSVLQLFKPPPASSKKIEPTAATSDLKPIASAEKEEKAAVVKFPRQDLPSLKLETEGAEPNTNPIVLWQVYAIGGFFVLRWAWSRWNERRGNRKPSDEEPPPSQE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55266" stop="54937"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RASSQSRVDFVLQHVRKEKTKNDTCGDRFMTLFESCKVLKSQFWFYSTKCKNPNQALRQFASQHHFVQPVFQPLLIILAKASGCVHELYCKLIYFIQLDKFFLNEKIVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="132613" PGL_stop="131703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132613" e_stop="131703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="132613" e_stop="131703" e_length="911"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132613" stop="131703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8575-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCTTGTTATCTAATAGAATGAGGCTATTTTGTAGTCGGTTGAACAGAGCAAGCTCGTCTCTCCGTGCCAGAATAAAGCCTAAAACATGCAGTGGAGGATTGGTTCTTGCTGTAATCTTTATAGTCACTGTGGTGTTAATGTGCACTGGAGTTAAATACATCTATGGAGGCAGCGGTGCAGAGGAAGCTTACCCGTTAAATGGTCAGTACTCTCAGTTCACTTTATTAACAATGACCTACGATGCTCGGCTCTGGAACTTGAAAATGTATGTCAAGCATTACTCAAGGTGTTCTTCAGTACGTGAGATCGTTGTAGTGTGGAATAAAGGCCAACCTCCAGAACTGAGTGAGCTCGATTCAGCAGTGCCAGTGAGGATAAGAGTAGAGAAACAGAACTCACTAAACAATCGATTCAAAGTAGATCCTTTGATAAAGACACGAGCAGTTCTTGAACTTGATGATGACATTATGATGCCTTGTGATGATGTTGAAAGGGGATTTAAGGTATGGCGTGAGTACCCTGAACGCATCGTTGGGTTTTACCCCCGGCTTGCAGATGGAAACCCATTGAAATATAGAGCTGAGAATCATGCTCGCGAGCACAATGGATACAACATGATTCTTACAGGAGCTGCCTTCATGGACAGCAAAATGGCTTTCGAAAAGTACTGGAGCAATGAAGCTGCAGCAGGAAGGGCCGTGGTGGACAAGCTTTTCAACTGTGAAGATGTGTTGCTAAACTACTTGTATGCAAACGCGAGCTCCTCCAGTACAGTTGAATACGTAAAACCAGCATGGGCAATCGATACTTCAAAGTTTTCTGGCGTTGCAATTAGCCGGAATACACAGACTCACTATGGACTCAGAAGCAGTTGCCTCCAAAAGTTCTCAGAAATGTATGGAAGTATA</gDNA_template>
            <first_frame> Q  A  C  Y  L  I  E  *  G  Y  F  V  V  G  *  T  E  Q  A  R  L  S  V  P  E  *  S  L  K  H  A  V  E  D  W  F  L  L  *  S  L  *  S  L  W  C  *  C  A  L  E  L  N  T  S  M  E  A  A  V  Q  R  K  L  T  R  *  M  V  S  T  L  S  S  L  Y  *  Q  *  P  T  M  L  G  S  G  T  *  K  C  M  S  S  I  T  Q  G  V  L  Q  Y  V  R  S  L  *  C  G  I  K  A  N  L  Q  N  *  V  S  S  I  Q  Q  C  Q  *  G  *  E  *  R  N  R  T  H  *  T  I  D  S  K  *  I  L  *  *  R  H  E  Q  F  L  N  L  M  M  T  L  *  C  L  V  M  M  L  K  G  D  L  R  Y  G  V  S  T  L  N  A  S  L  G  F  T  P  G  L  Q  M  E  T  H  *  N  I  E  L  R  I  M  L  A  S  T  M  D  T  T  *  F  L  Q  E  L  P  S  W  T  A  K  W  L  S  K  S  T  G  A  M  K  L  Q  Q  E  G  P  W  W  T  S  F  S  T  V  K  M  C  C  *  T  T  C  M  Q  T  R  A  P  P  V  Q  L  N  T  *  N  Q  H  G  Q  S  I  L  Q  S  F  L  A  L  Q  L  A  G  I  H  R  L  T  M  D  S  E  A  V  A  S  K  S  S  Q  K  C  M  E  V   </first_frame>
            <second_frame>  K  L  V  I  *  *  N  E  A  I  L  *  S  V  E  Q  S  K  L  V  S  P  C  Q  N  K  A  *  N  M  Q  W  R  I  G  S  C  C  N  L  Y  S  H  C  G  V  N  V  H  W  S  *  I  H  L  W  R  Q  R  C  R  G  S  L  P  V  K  W  S  V  L  S  V  H  F  I  N  N  D  L  R  C  S  A  L  E  L  E  N  V  C  Q  A  L  L  K  V  F  F  S  T  *  D  R  C  S  V  E  *  R  P  T  S  R  T  E  *  A  R  F  S  S  A  S  E  D  K  S  R  E  T  E  L  T  K  Q  S  I  Q  S  R  S  F  D  K  D  T  S  S  S  *  T  *  *  *  H  Y  D  A  L  *  *  C  *  K  G  I  *  G  M  A  *  V  P  *  T  H  R  W  V  L  P  P  A  C  R  W  K  P  I  E  I  *  S  *  E  S  C  S  R  A  Q  W  I  Q  H  D  S  Y  R  S  C  L  H  G  Q  Q  N  G  F  R  K  V  L  E  Q  *  S  C  S  R  K  G  R  G  G  Q  A  F  Q  L  *  R  C  V  A  K  L  L  V  C  K  R  E  L  L  Q  Y  S  *  I  R  K  T  S  M  G  N  R  Y  F  K  V  F  W  R  C  N  *  P  E  Y  T  D  S  L  W  T  Q  K  Q  L  P  P  K  V  L  R  N  V  W  K  Y  </second_frame>
            <third_frame>   S  L  L  S  N  R  M  R  L  F  C  S  R  L  N  R  A  S  S  S  L  R  A  R  I  K  P  K  T  C  S  G  G  L  V  L  A  V  I  F  I  V  T  V  V  L  M  C  T  G  V  K  Y  I  Y  G  G  S  G  A  E  E  A  Y  P  L  N  G  Q  Y  S  Q  F  T  L  L  T  M  T  Y  D  A  R  L  W  N  L  K  M  Y  V  K  H  Y  S  R  C  S  S  V  R  E  I  V  V  V  W  N  K  G  Q  P  P  E  L  S  E  L  D  S  A  V  P  V  R  I  R  V  E  K  Q  N  S  L  N  N  R  F  K  V  D  P  L  I  K  T  R  A  V  L  E  L  D  D  D  I  M  M  P  C  D  D  V  E  R  G  F  K  V  W  R  E  Y  P  E  R  I  V  G  F  Y  P  R  L  A  D  G  N  P  L  K  Y  R  A  E  N  H  A  R  E  H  N  G  Y  N  M  I  L  T  G  A  A  F  M  D  S  K  M  A  F  E  K  Y  W  S  N  E  A  A  A  G  R  A  V  V  D  K  L  F  N  C  E  D  V  L  L  N  Y  L  Y  A  N  A  S  S  S  S  T  V  E  Y  V  K  P  A  W  A  I  D  T  S  K  F  S  G  V  A  I  S  R  N  T  Q  T  H  Y  G  L  R  S  S  C  L  Q  K  F  S  E  M  Y  G  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0143O06.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132611" stop="131703"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSNRMRLFCSRLNRASSSLRARIKPKTCSGGLVLAVIFIVTVVLMCTGVKYIYGGSGAEEAYPLNGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVREIVVVWNKGQPPELSELDSAVPVRIRVEKQNSLNNRFKVDPLIKTRAVLELDDDIMMPCDDVERGFKVWREYPERIVGFYPRLADGNPLKYRAENHAREHNGYNMILTGAAFMDSKMAFEKYWSNEAAAGRAVVDKLFNCEDVLLNYLYANASSSSTVEYVKPAWAIDTSKFSGVAISRNTQTHYGLRSSCLQKFSEMYGSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 17 chains have been computed
$ 
$ memory statistics:
$ 14696 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2099 bytes was the average size of a spliced alignment
$ 8384 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2794 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 17 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 05:48:40
-->
