<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 20:55:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360256" ref_strand="+" ref_description="SGN-E360256 [cLPP-14-H8]">
      <seq>acgtttctctctccttcctttttcccgtccgccatcattttctacttctccgaaatcctccgtcaccgggaaaaataagttaaccggaaccgaaaatgagcgtcatcgacattatcttcagagtcgatacgatatgtaagaagtacgaaaagtacgatgtcgagaagcattcagctaatgattcccccggcgacgccttcgctcgcctttattcgtccttcgaatctcaaattgacgctacttctgagaaagcagagatggctgctatggaaactaacagagctaaagcggtggctatgaaggcggaagtacgacgaacaaaggctcgtttaatggatgaaatcaaaaaattgcacaaacttgctcagaaaaaggttaaaggactatcccaagaggaactggagactcgtggtgatttggtacatatgctatcggagagaattcaggcaatacctgatggaagtataaatgcagccaaaacaacaggaggtcgcgggacttcatcattcaacaaaaatataaaatttgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="3889" stop="5731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4187" g_stop="4433" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4638" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="374" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4639" i_stop="5273" i_length="635">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5274" g_stop="5431" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="532" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E360256" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4187" e_stop="4433"/>
          <exon e_start="4513" e_stop="4638"/>
          <exon e_start="5274" e_stop="5431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTCTCTCTCCTCCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACC-GGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAGGTAATTTCTCGTTCCGATTTCAAAGTTGAATCGAATTTAGAGGTTTTTTTTTTGAGAAATTTGTTGTTCGATTTTGCAGAAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAGGTAAAAATTTGTTTAAATTTTGGGTATTTTGGTGTTTTAATGTATGTATGTAATTGGAGAAGTTGTTCTTTTGTGTGTTTTCGAGAATTCTGTATTTTGCTCGTTGTTTTGGTTACCCATCCAACGTCTAGTACCTGTATTTGGACCCATTTAATGAAAGCGCTCTGTACCAGGATTTTTTCTATATCGAGGCTCGAACCTTAGACCTCTAGTTAAGTACGAAGCTCATCACAATTCTTGATAGTGCGTCAAGGCGAGCTTTGAATGTGATTTTGAACCATATGGTTTTCTTTTTATGTTTAGTAATGTCAAAATTAGTTGATAGGTTCTCCTGTTGTAAGTGTTATGTTGAGCAAAATGGTTGCTTCCAACATTCCCGAGTATCATGTTACTCATACTATCCAAAAATGCTCCCATAACCATGTTGGATCCTTCTAAATGCACTACTTTTGAAGAATCCAACATGCGCTTGTTGACGTTTCTTAAGAGTCCAAGCAACAAAGATATTAGGTATAAAGAAAGTTTAACTGCGGAATTTAATTACCCAAGGTGCTAGTTTTGATAACTTGTCTTTTGGTCGAGGTATATAGCTTTTTACATTGGGCAAATGTTAGTGATAACTAGATTACAATCAGGTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGGAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTC</genome_strand>
        <mrna_strand>ACGTTTCTCTCTCCTTCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACCGGGAAAAATAAGTTAACCGGAACCGAAAATGAGCGTCATCGACATTATCTTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGACGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG...............................................................................AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAAGTACGACGAACAAAGGCTCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGAAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360088" ref_strand="+" ref_description="SGN-E360088 [cLPP-14-M19]">
      <seq>ttttctacttctccgaaatcctccgtcaccgggaaaaataagttaaccggaaccgaaaatgagcgtcatcgacattatcttcagagtcgatacgatatgtaagaagtacgaaaagtacgatgtcgagaagcattcagctaatgattcccccggcgacgccttcgctcgcctttattcgtccttcgaatctcaaattgacgctacttctgagaaagcagagatggctgctatggaaactaacagagctaaagcggtggctatgaaggcggaagtacgacgaacaaaggctcgtttaatggatgaaatcaaaaaattgcacaaacttgctcagaaaaaggttaaaggactatcccaagaggaactggagactcgtggtgatttggtacatatgctatcggagagaattcaggcaatacctgatggaagtataaatgcagccaaaacaacaggaggtcgcgggacttcatcattcaacaaaaatataaaatttgactcagagggacagttcaacgagggtttctacgagcaaactgaagagggctctcattttagatctgagtatgagatgcggaaaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="3924" stop="5893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4224" g_stop="4433" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4638" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="337" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4639" i_stop="5273" i_length="635">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5274" g_stop="5433" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="497" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5434" i_stop="5511" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5512" g_stop="5593" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="579" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E360088" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4224" e_stop="4433"/>
          <exon e_start="4513" e_stop="4638"/>
          <exon e_start="5274" e_stop="5433"/>
          <exon e_start="5512" e_stop="5593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTTCTCCGAAATCCTCCGTCACC-GGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAGGTAATTTCTCGTTCCGATTTCAAAGTTGAATCGAATTTAGAGGTTTTTTTTTTGAGAAATTTGTTGTTCGATTTTGCAGAAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAGGTAAAAATTTGTTTAAATTTTGGGTATTTTGGTGTTTTAATGTATGTATGTAATTGGAGAAGTTGTTCTTTTGTGTGTTTTCGAGAATTCTGTATTTTGCTCGTTGTTTTGGTTACCCATCCAACGTCTAGTACCTGTATTTGGACCCATTTAATGAAAGCGCTCTGTACCAGGATTTTTTCTATATCGAGGCTCGAACCTTAGACCTCTAGTTAAGTACGAAGCTCATCACAATTCTTGATAGTGCGTCAAGGCGAGCTTTGAATGTGATTTTGAACCATATGGTTTTCTTTTTATGTTTAGTAATGTCAAAATTAGTTGATAGGTTCTCCTGTTGTAAGTGTTATGTTGAGCAAAATGGTTGCTTCCAACATTCCCGAGTATCATGTTACTCATACTATCCAAAAATGCTCCCATAACCATGTTGGATCCTTCTAAATGCACTACTTTTGAAGAATCCAACATGCGCTTGTTGACGTTTCTTAAGAGTCCAAGCAACAAAGATATTAGGTATAAAGAAAGTTTAACTGCGGAATTTAATTACCCAAGGTGCTAGTTTTGATAACTTGTCTTTTGGTCGAGGTATATAGCTTTTTACATTGGGCAAATGTTAGTGATAACTAGATTACAATCAGGTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGGAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAGGTAATATATAATCAGTTCTCTTTGTTTTCGTTACAATGTAGTTTCTGGATTTCTCACGATGTCAAAAATGCATATTAGAGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCACTCATTTTAGATCTGAGTATGAGATACGGAAAATGAA</genome_strand>
        <mrna_strand>TTTTCTACTTCTCCGAAATCCTCCGTCACCGGGAAAAATAAGTTAACCGGAACCGAAAATGAGCGTCATCGACATTATCTTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGACGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG...............................................................................AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAAGTACGACGAACAAAGGCTCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGAAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAG..............................................................................AGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCTCTCATTTTAGATCTGAGTATGAGATGCGGAAAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360093" ref_strand="+" ref_description="SGN-E360093 [cLPP-14-O19]">
      <seq>ttttctacttctccgaaatcctccgtcaccgggaaaaataagttaaccggaaccgaaaatgagcgtcatcgacattatcttcagagtcgatacgatatgtaagaagtacgaaaagtacgatgtcgagaagcattcaactaatgattcccccggcgacgccttcgctcgcctttattcgtccttcgaatctcaaattgacgctacttctgagaaagcagagatggctgctatggaaactaacagagctaaagcggtggctatgaaggcggaagtacgacgaacaaaggctcgtttaatggatgaaatcaaaaaattgcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="3924" stop="4923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4224" g_stop="4433" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4513" g_stop="4623" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="322" r_length="111" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E360093" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4224" e_stop="4433"/>
          <exon e_start="4513" e_stop="4623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTACTTCTCCGAAATCCTCCGTCACC-GGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAGGTAATTTCTCGTTCCGATTTCAAAGTTGAATCGAATTTAGAGGTTTTTTTTTTGAGAAATTTGTTGTTCGATTTTGCAGAAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAA</genome_strand>
        <mrna_strand>TTTTCTACTTCTCCGAAATCCTCCGTCACCGGGAAAAATAAGTTAACCGGAACCGAAAATGAGCGTCATCGACATTATCTTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAACTAATGATTCCCCCGGCGACGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG...............................................................................AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAAGTACGACGAACAAAGGCTCGTTTAATGGATGAAATCAAAAAATTGCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590451" ref_strand="+" ref_description="SGN-E590451 [44047]">
      <seq>atactaaaatcaaacataaactcaaagaagaggaaaatcaagaagaagtgaagttgttataacaactctattgtttgtttttgttttaaaaacattgtacactatacaatgagtatttcttgggatttagctgttttgagcaaatcttgtgacttctcttgaaatcgagctgagctgagctgaactaaactaaactaaaccgaactttttttttttttggtgtgtgtgttcattttacttcaaattttgaggttcaagaagaaaatgatgtctaatgatggactttcttgttccatgagaggtggtttcactttcattcaagatccaaaaaaccctagtactaatattaatcatccaaatccaaaccctaattcaaatccagatgtttcttgtgctaataagaggaagagaaatctccccggaaatccagatccagatgcagaagtgatagctttttcaccaacatctctaatggcgacgaatcgattcgtgtgtgaaatatgcaacaagggtttccaaagagatcaaaatttacaactccatagaagaggtcacaatttaccatggaaattgaaacaaagaaataacaaagaagttattaacaaaaaaagtttatatttgtccagaaaaatcatgtgtacatcatgatccatcaagagcattaggtgatttaactggggttaaaaaaagcattattcaagaaaaccatggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="10925" stop="12500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11200" g_stop="11633" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11634" i_stop="11717" i_length="84">
            <donor d_prob="0.957" d_score="0.86"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11718" g_stop="11727" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="430" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11728" i_stop="11936" i_length="209">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11937" g_stop="12217" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="715" r_length="285" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E590451" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11200" e_stop="11633"/>
          <exon e_start="11718" e_stop="11727"/>
          <exon e_start="11937" e_stop="12217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTAAAATCAAACAAAAACTTAGAAAAAAGGAAAATCAAGAAGAAGAAGTGAAGTTGTTATAACAACTCTATTGTTTGTTTTTGTTTTAATAACATTGTACACTATACAATGAGTATTTTTTGGGATTTAGCTGTTTTGAGTAAAATCTTGTGGCTTCTCTTGAAATCGAGCTGAGCTGAACTGAACTGAATTGAACTAAATCGAACTTCTTCTTTTTTCTTTTTGGTGTGTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAGAAAAATGATGTCTAATGATGGACTTTCTTGTTCCATGAGAGGTGGTTTGACTTTGATTCAAGATTCAAAAAACCATAATACTAATATAAATCATCAAAATCCAAACCCTAATTCAAATCTAGATGTTTCTTCAGCTAATAAGAGGAAGAGAAATCTGAATGCATCTCTAAACTTAGTATTTATTCAACTATAGTTTTTAAGGGTTTTTCATGTATGTATATTATTTTAGTTGAAAATGATGTAGGAACGTCCATCAAACTCCATCCTAAAACTCTGAATCCGCCTCTGAATCAATCAATAACATGTTTTGTATATATACATACAAGATTTTATTTTTTTTCCCCCTTTTTTTCAATTGAAAATGATATACAACACTCTAAATTAAGATTTTTTTCTTCTCTTTTTAACTCTTCTAATTGCTCTAACATAACTATAACTTCTTTTTTGTTGCTAAAAAAAATAGATCCAAATGCAGAAGTGATAGCTCTTTCACCAAAATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAACTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTA-TAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTT-AAAAAA-CATTACTCAAGAAAA-CATGGTGAA</genome_strand>
        <mrna_strand>ATACTAAAATCAAACATAAACTCAAAGAAGAGGAAAATC---AAGAAGAAGTGAAGTTGTTATAACAACTCTATTGTTTGTTTTTGTTTTAAAAACATTGTACACTATACAATGAGTATTTCTTGGGATTTAGCTGTTTTGAG-CAAATCTTGTGACTTCTCTTGAAATCGAGCTGAGCTGAGCTGAACTAAACTAAACTAAACCGAA---C-T-TTTTTT-TTTTT--TG-GTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAG-AAAATGATGTCTAATGATGGACTTTCTTGTTCCATGAGAGGTGGTTTCACTTTCATTCAAGATCCAAAAAACCCTAGTACTAATATTAATCATCCAAATCCAAACCCTAATTCAAATCCAGATGTTTCTTGTGCTAATAAGAGGAAGAGAAATCTCCCC....................................................................................GGAAATCCAG.................................................................................................................................................................................................................ATCCAGATGCAGAAGTGATAGCTTTTTCACCAACATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAATTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATTAACAAAAAAAGTTTATATTTGTCCAGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAAAGCATTATTCAAGAAAACCATGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440132" ref_strand="+" ref_description="SGN-E440132 [cSTA-15-K17]">
      <seq>caaagaagaggaaaatcaagaagaagtgaagttgttataacaactctattgtttgtttttgttttaaaaacattgtacactatacaatgagtatttcttgggatttaactgttttgagcaaatcttgtgacttctcttgaaatcgagctgagctgagctgaactaaactaaactaaaccgaacttttttttttttttttggtgtgtgtgttcattttacttcaaattttgaggttcaagaagaaaatgatgtctaatgatggactttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="10925" stop="11802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11222" g_stop="11502" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E440132" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.041" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11222" e_stop="11502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAAAAGGAAAATCAAGAAGAAGAAGTGAAGTTGTTATAACAACTCTATTGTTTGTTTTTGTTTTAATAACATTGTACACTATACAATGAGTATTTTTTGGGATTTAGCTGTTTTGAGTAAAATCTTGTGGCTTCTCTTGAAATCGAGCTGAGCTGAACTGAACTGAATTGAACTAAATCGAACTTCTTCTTTTTTCTTTTTGGTGTGTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAGAAAAATGATGTCTAATGATGGACTTTCTT</genome_strand>
        <mrna_strand>CAAAGAAGAGGAAAATC-A-A-GAAGAAGTGAAGTTGTTATAACAACTCTATTGTTTGTTTTTGTTTTAAAAACATTGTACACTATACAATGAGTATTTCTTGGGATTTAACTGTTTTGAG-CAAATCTTGTGACTTCTCTTGAAATCGAGCTGAGCTGAGCTGAACTAAACTAAACTAAACCGAACTT-TT-TTTTTT-TTTTT--TG-GTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAG-AAAATGATGTCTAATGATGGACTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484181" ref_strand="+" ref_description="SGN-E484181 [cSTE-12-K22]">
      <seq>tgtttgtttttgttttaaaaacctgtaccacctcacaatgagtactttcttgggacttaagcctgttttgagccaaatcttgtgacttctcttgaaatcgagcctgagctgagcctgaactaaactaaactaaaccgaacctttttttttttttttggtgtgtgtgttcattttacttcaaattttgaggttcaagaaagaaaatgatgtctaatgatggactttcttgttccatgagaggtggtttcactttcattcaagatccaaaaaaccctagtactaatattaatcatccaaatccaaaccctaattcaaatccagatgtttcttgtgctaataagaggaagagaaatctccccggaaatccagatccagatgcagaagtgatagctttttcaccaacatctctaatggcgacgaatcgattcgtgtgtgaaatatgcaacaagggtttccaaagagatcaaaatttacaactccatagaagaggtcacaatttaccatggaaattgaaacaaagaaataacaaagaagttattaaaaaaaaagtttatatttgtccagaaaaatcatgtgtacatcatgatccatcaagagcattaggtgatttaactggggttaaaaaacattattcaagaaaacatggtgaaaaaaaatggaaatgtgaaaaatgttcaaaaaaatatgcagttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="10974" stop="12566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11274" g_stop="11633" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11634" i_stop="11717" i_length="84">
            <donor d_prob="0.957" d_score="0.86"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11718" g_stop="11727" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="369" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11728" i_stop="11936" i_length="209">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11937" g_stop="12266" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="699" r_length="330" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E484181" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11274" e_stop="11633"/>
          <exon e_start="11718" e_stop="11727"/>
          <exon e_start="11937" e_stop="12266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTGTTTTTGTTTTAATAACATTGTACACTATACAATGAGTA-TTTTTTGGGA-TTTAG-CTGTTTTGAGTAAAATCTTGTGGCTTCTCTTGAAATCGAG-CTGAGCTGA-ACTGAACTGAATTGAACTAAATCGAACTTCTTCTTTTTTCTTTTTGGTGTGTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAGAAAAATGATGTCTAATGATGGACTTTCTTGTTCCATGAGAGGTGGTTTGACTTTGATTCAAGATTCAAAAAACCATAATACTAATATAAATCATCAAAATCCAAACCCTAATTCAAATCTAGATGTTTCTTCAGCTAATAAGAGGAAGAGAAATCTGAATGCATCTCTAAACTTAGTATTTATTCAACTATAGTTTTTAAGGGTTTTTCATGTATGTATATTATTTTAGTTGAAAATGATGTAGGAACGTCCATCAAACTCCATCCTAAAACTCTGAATCCGCCTCTGAATCAATCAATAACATGTTTTGTATATATACATACAAGATTTTATTTTTTTTCCCCCTTTTTTTCAATTGAAAATGATATACAACACTCTAAATTAAGATTTTTTTCTTCTCTTTTTAACTCTTCTAATTGCTCTAACATAACTATAACTTCTTTTTTGTTGCTAAAAAAAATAGATCCAAATGCAGAAGTGATAGCTCTTTCACCAAAATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAACTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTG</genome_strand>
        <mrna_strand>TGTTTGTTTTTGTTTTAAAAACCTGTACCACCTCACAATGAGTACTTTCTTGGGACTTAAGCCTGTTTTGAGCCAAATCTTGTGACTTCTCTTGAAATCGAGCCTGAGCTGAGCCTGAACTAAACTAAACTAAACCGAAC--CTT-TTTTTT-TTTTT-TTG-GTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAAGAAAATGATGTCTAATGATGGACTTTCTTGTTCCATGAGAGGTGGTTTCACTTTCATTCAAGATCCAAAAAACCCTAGTACTAATATTAATCATCCAAATCCAAACCCTAATTCAAATCCAGATGTTTCTTGTGCTAATAAGAGGAAGAGAAATCTCCCC....................................................................................GGAAATCCAG.................................................................................................................................................................................................................ATCCAGATGCAGAAGTGATAGCTTTTTCACCAACATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAATTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATTAAAAAAAAAGTTTATATTTGTCCAGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTATTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461091" ref_strand="+" ref_description="SGN-E461091 [cPRO-34-C10]">
      <seq>gttaattgaactcactcccaacactctaaatcaagatttttcttctctttttaacccttcttgctcttaacataactaactttttttgttgctaaaaaatagatccagatgcagaagtgatagctctttcaccaacatctctaatggcgacgaatcgattcgtgtgtgaaatatgcaacaagggtttccaaagagatcaaaatttacaactccatagaagaggtcacaatttaccatggaaattgaaacaaagaaataacaaagaagttattaaaaaaaaagtttatatttgtccagaaaaatcatgtgtacatcatgatccatcaagagcattaggtgatttaactggggttaaaaaacattattcaagaaaacatggtgaaaaaaaatggaaatgtgaaaaatgttcaaaaaaatatgcagttcaatctgattggaaagctcatagtaagatttgtggtactaaagagtacaaatgtgattgtggcacacttttttccaggtacgtaatctctgtctcaatttacgtaacacatttcagatttactggtaactaagtttaaatgtgactatggtactctcttttctaggtacttttcatgactaagattttattacttttagagaatttaatttaatagagaatattggtaataaagtactagtcctataatatgattagtttgttgatgaaataaatggtctagatatatgtgaaatttaattctaactcaatcaagattcactacaaaaaagtgtaagcttctatcgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="11543" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11824" g_stop="12378" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12379" i_stop="12669" i_length="291">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12670" g_stop="12863" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="739" r_length="195" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E461091" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11824" e_stop="12378"/>
          <exon e_start="12670" e_stop="12863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGAAAATGATATACAACACTCTAAATTAAGATTTTTTTCTTCTCTTTTTAACTCTTCTAATTGCTCTAACATAACTATAACTTCTTTTTTGTTGCTAAAAAAAATAGATCCAAATGCAGAAGTGATAGCTCTTTCACCAAAATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAACTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAGAGAGTATAAATGTGATTGTGGCACACTTTTTTCCAGGTACGTAATCTCTGTCTCAATTTACGTGACACATTTTACATTTCAAAATTCATTATACAAGTCTTTCTTTAATTATATATATGTCTCAATTCATGTGACATATTCAGATTTCAAGATTCATACAAGTCTTTCTTTGACTGTATTGTATCTATTTCAATTTATATGACATATTCAGATTTCAAGATTCATACGAATTTTTCTTTAATCGTATCTGTCTTAATTTATATGATATATATTTAAATTTTAAAATTTATACAAGTCTTTCTTTATTTATATCTGTCTCAATTTATATGTCATATTCAGATGTCAAGATTCATACGAGTCTTTTTTGAGTGTCTTTAGCTAAGTATTAGATGTGACTATGGTACACTATTTTCTAGGTACCTTTCATGAATTAGATTTTATTACTTTTAAGAGAATTTAATTTGATAGAGAATATAGGTAATAAAGTAATA-T--TGTCCTATGATTAGTTTGTTGATGAAATAAATGGTATAGATATATGTGAAATTTAATTCAAACTCTATCAA</genome_strand>
        <mrna_strand>GTTAATTGAA-CTCACTCCCAACACTCTAAATCAAGA--TTTTTCTTCTCTTTTTAACCCTTCTTGCT-CT-TAACATAAC--TAAC-T-TTTTTTGTTGCT--AAAAAATAGATCCAGATGCAGAAGTGATAGCTCTTTCACCAACATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAATTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATTAAAAAAAAAGTTTATATTTGTCCAGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTATTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAAAGAGTACAAATGTGATTGTGGCACACTTTTTTCCAGGTACGTAATCTCTGTCTCAATTTACGTAACACATTTCAGATT...................................................................................................................................................................................................................................................................................................TACTGGTAACTAAGT-TTAAATGTGACTATGGTACTCTCTTTTCTAGGTACTTTTCATGACTAAGATTTTATTACTTTT-AGAGAATTTAATTTAATAGAGAATATTGGTAATAAAGTACTAGTCCTATAATATGATTAGTTTGTTGATGAAATAAATGGTCTAGATATATGTGAAATTTAATTCTAACTCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486050" ref_strand="+" ref_description="SGN-E486050 [cSTE-20-D12]">
      <seq>catggaaattgaaacaaagaaataacaaagaagttattaaaaaaaaagtttatatttgtccagaaaaatcatgtgtacatcatgatccatcaagagcattaggtgatttaactggggttaaaaaacattattcaagaaaacatggtgaaaaaaaatggaaatgtgaaaaatgttcaaaaaaatatgcagttcaatctgattggaaagctcatagtaagatttgtggtactaaagagtacaaatgtgattgtggcacacttttttccagaaaggatagctttataacacacagagcattttgtgatgcattagctgaagaaagtacaagatttacatcaatcccaacagcaacaaatcttaataacttcagaaatcaattgattaatggtgggattagtactaatctccaacaacaacaacaaatgagtggaaatatttctcaattaatgggattgggatcattagacccttcaaatcaacttaatcttgatcatggacaaaaaaacaaggctaccactttggcttcatcataacaatgcaaattatggtaaccctaatgactttttatcaacacccatcaccacaacaagcaccttggctcatgaattggtacaaatggcaccacatacaaacatgttaggcttgtcttcgtcncngaacaataacaacaacaacaataatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="11769" stop="16529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12069" g_stop="12336" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12337" i_stop="13215" i_length="879">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13216" g_stop="13493" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="547" r_length="279" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13494" i_stop="16092" i_length="2599">
            <donor d_prob="0.973" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16093" g_stop="16229" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="684" r_length="137" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E486050" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12069" e_stop="12336"/>
          <exon e_start="13216" e_stop="13493"/>
          <exon e_start="16093" e_stop="16229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAGAGAGTATAAATGTGATTGTGGCACACTTTTTTCCAGGTACGTAATCTCTGTCTCAATTTACGTGACACATTTTACATTTCAAAATTCATTATACAAGTCTTTCTTTAATTATATATATGTCTCAATTCATGTGACATATTCAGATTTCAAGATTCATACAAGTCTTTCTTTGACTGTATTGTATCTATTTCAATTTATATGACATATTCAGATTTCAAGATTCATACGAATTTTTCTTTAATCGTATCTGTCTTAATTTATATGATATATATTTAAATTTTAAAATTTATACAAGTCTTTCTTTATTTATATCTGTCTCAATTTATATGTCATATTCAGATGTCAAGATTCATACGAGTCTTTTTTGAGTGTCTTTAGCTAAGTATTAGATGTGACTATGGTACACTATTTTCTAGGTACCTTTCATGAATTAGATTTTATTACTTTTAAGAGAATTTAATTTGATAGAGAATATAGGTAATAAAGTAATATTGTCCTATGATTAGTTTGTTGATGAAATAAATGGTATAGATATATGTGAAATTTAATTCAAACTCTATCAAGTTGATGAAATTTTTTTATATATATAATCCATCGTTAATCTGTTACAAAATTACTTGTTTGCTAAGTTTTTTAATAATACGTCTCTAACATGTCACTAATACATTCTTTGTAGCTAAGTTTTTTTTAAATAATTTGTCGTTAATTTATGGTAAATTGCTCGTAGTAATATTTTTGATAATTTATCGTTAATTGTTCGTAGATAAGTGTTGATAATATGTCATTGTGTATGTAATATATCGCTAAATAGGACTAGCGATGGATTTTTGTTGTTGTCATTTATATATAATTTGTATTTTTGAAGGGTTTTGTTTTCTTCTATTTAATTTTATCTGTCGCTAATTTCTATAACAGAAAGGATAGCTTTATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTACAAGATTTACATCAATCCAAACAGCAGTAAATCTTAATAATTTGAGAAATCAATTGATTAATGGTGGGATTAGCACTAATCTCCAACAACAACAACAAATGAGTGGAAATATTTCTCAATTAATGGGATTGGGATCCTTAGACCCTTCAAATCAACTTAATCTTGATCATGGAC-AAAAATCAAGGCTACCACTTTGGCTTCATCATGAAAATTCAAATTATGGTAAGCATATAAGTTCATCTGAATTTAGTATGTATATATATAAGTGAAAAGTCACTAAAATATCAAAAAAATTCATTTTGACACGTAATTTCGAAAAGTTCAATAAATTAGCACTATTAGTAGATGTTAGATTCTCAAAAAATTAGTGTATTTTGAAGGATGTAAAACATGGTGCAACATCATATTTTATAGAGTCTAAATAACATAAATTAAATGTTTTAATCATCACTATAAGAAAATTATGAATTACATAAAGACTTTTTTAGGAATTAGTATGAAAATTTATAGAAAAATAAGTGAACTATGAAATTTTATACTAATCCCTATGAAAATTTTCATATAATTCACTTTTTTTTTAAAATACATATTCAAAATTAAAATTATGATTTCGTTTCTTTAAGTTACTAGTGAGTTCCAGTTAACTAGGTATGTATATATATATAAAAAAATTCTAATAAATTTTTTTTTATTAAATCGTTGCAATAAGCAATTTTTTAAATAAAAAAATTAAAAATGTTAAAACAGCGATTTTATATATATAAAAAAATTATAATATTTTTTAAAATTTATGTATATAACTTATAAGAAAATATACATTATTTTATAAAAATTAAAAATAAGTAAAGTAATAAATATATTTTCTTCTAAAAAAAGATATTATATTGAATTTAAATTTAAATAATATTTGAATTCAAATAATTAATTTTTTAAAATAAAAAATTAAAGGAGAAAAATTATTGAATTTTTTTTTAAAACAAAATGATATATATATATATATATATATATATATATATATATATATATATATAAAGTTAAAGAGGATCACATGACAATAGTAGACCCTTTGTTTTTATTGTAAATTTTGAAGAAAATATTCACATGTAAATAGTACATCATACTTTCAATTCTATAAATTGGTACTTTCAATCTTTCAATCTTCCAATCCAATCTACTTTCAATCTTCCACAATCTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAGGAAAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAACAATATCATATAATTTAAAATTTATTTTAATTAATTTTATACTTTTATATGAGATTGTTAATAATTTAAAATTTATGTAATATACATACTAATGCCTCATGTCTTCCTGCCATGTGTTGATACCCTTTTTGTACAACATGTTGTGGATTTCCAATGACCATGCGGGTATGCCTCATGTACCAAGGATATCATATAAAAGTATAAAATTAATTAAAATAAATTAAAAATAAAATAAATTTAAACTTGCCTTATAAAGAAAATGCTTTTAAAAACTTTAGAAAATTTGAAGAATAACAAGAATTTTAAGATTGTGGAAGATTGAAAGTAGATTGGATTGGAAGATTGAAAGTACCAATTTATAGAATTGAAAGTATGATGTACTATTTACATGTGAATATTTTCTTCAAAATTTACAATAAAAACAAAGGATCTACTATTGTCATGTGATCCTCTTTAACTTTATATATATATATATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATATTTTTTACCCCTTTTTAGCCTACGTGACATTATCTTGTGGGCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTGTAAAATAAGTTCAGGAGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGCCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTATATATATATATATATATATATATATATATATATATATATATATATATCATTTTGTTTTCAATAATTTTTCTCCTTTAATTTTTTATTTAAAAAAATTAATTATTTGAATTCAAATATTATTTAAATTTAAATTCAATATAATATCTTTTTTTTAGAAAGAAAATATATTTATTACTTTACTTATTTTTAATTTTTTAAAAATAATGTATATTTTCTTATAAGTTATATACATTAATTTTAAAAAATATTATAATTTTTTTATATATATAAAATCGCTGTTTTAACATTTTTAAATTTTTTTTATTTAAAAAATTGCTTATTGCAGCGATTTAATAATTTATTTTTTTTTATAAATCGCTGCTCAGGCAGCGATTTATATTAGAATTTTTTTTTATTTTTATAAATCGCTGCACTGGCAGCGATTTGTAAGAAGAAAAATTTTGAAATCGCTGCTTGGGCAGCGATTTCATTTTTTTATTAATTTTTTTTTTTTTGCAAAATCGCTGCCTCAGCAGCGATTTTACTTTTTCAGGTGAAGTAATCCTGCACCGGCAGCGATTTTACCGTTTTGGTTAATATAAAATTTTATATACCGTTTTGAAATTTTTATTAATATTTTTTACCCTTTGAGTTTCGGACTCATGTATATATGTGTGAAATTTCTTTTATTGTTATTTCAAATTTTGAATCAGTCTTTATTGTGTAGGTAACCCTAATGACTTTTTATCAACA-CCATCAACCACAACAAGCACCTTGCCTCATGAGTTGGTACAAGTGGCACCACACGCAAACATGCTAGGCTCGTCTTCGTTACATAAGAATAACAACAACAATAACAATAAT</genome_strand>
        <mrna_strand>CATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATTAAAAAAAAAGTTTATATTTGTCCAGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTATTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAAAGAGTACAAATGTGATTGTGGCACACTTTTTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATAGCTTTATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTACAAGATTTACATCAATCCCAACAGCAACAAATCTTAATAACTTCAGAAATCAATTGATTAATGGTGGGATTAGTACTAATCTCCAACAACAACAACAAATGAGTGGAAATATTTCTCAATTAATGGGATTGGGATCATTAGACCCTTCAAATCAACTTAATCTTGATCATGGACAAAAAAACAAGGCTACCACTTTGGCTTCATCATAACAATGCAAATTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTAATGACTTTTTATCAACACCCATC-ACCACAACAAGCACCTTGGCTCATGAATTGGTACAAATGGCACCACATACAAACATGTTAGGCTTGTCTTCGTCNCNGAACAATAACAACAACAACAATAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482076" ref_strand="+" ref_description="SGN-E482076 [cSTD-20-D12]">
      <seq>catggaaattgaaacaaagaaataacaaagaagttattaaaaaaaaagtttatatttgtccagaaaaatcatgtgtacatcatgatccatcaagagcattaggtgatttaactggggttaaaaaacattattcaagaaaacatggtgaaaaaaaatggaaatgtgaaaaatgttcaaaaaaatatgcagttcaatctgattggaaagctcatagtaagatttgtggtactaaagagtacaaatgtgattgtggcacacttttttccagaaaggatagctttataacacacagagcattttgtgatgcattagctgaagaaagtacaagatttacatcaatcccaacagcaacaaatcttaataacttcagaaatcaattgattaatggtgggattagtactaatctccaacaacaacaacaaatgagtggaaatatttctcaattaatgggattgggatcattagacccttcaaatcaacttaatcttgatcatggacaaaaaaacaaggctaccactttggcttcatcataacaatgcaaattatggtaaccctaatgactttttatcaacaccatcaaccacaacaagcaccttggctcatgaattggtacaaatggcaccacatacaaacatgttaggcttgtcttcgtcacagaacataacacaacacatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="11769" stop="16524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12069" g_stop="12336" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12337" i_stop="13215" i_length="879">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13216" g_stop="13493" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="547" r_length="279" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13494" i_stop="16092" i_length="2599">
            <donor d_prob="0.973" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16093" g_stop="16224" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="678" r_length="131" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E482076" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12069" e_stop="12336"/>
          <exon e_start="13216" e_stop="13493"/>
          <exon e_start="16093" e_stop="16224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAGAGAGTATAAATGTGATTGTGGCACACTTTTTTCCAGGTACGTAATCTCTGTCTCAATTTACGTGACACATTTTACATTTCAAAATTCATTATACAAGTCTTTCTTTAATTATATATATGTCTCAATTCATGTGACATATTCAGATTTCAAGATTCATACAAGTCTTTCTTTGACTGTATTGTATCTATTTCAATTTATATGACATATTCAGATTTCAAGATTCATACGAATTTTTCTTTAATCGTATCTGTCTTAATTTATATGATATATATTTAAATTTTAAAATTTATACAAGTCTTTCTTTATTTATATCTGTCTCAATTTATATGTCATATTCAGATGTCAAGATTCATACGAGTCTTTTTTGAGTGTCTTTAGCTAAGTATTAGATGTGACTATGGTACACTATTTTCTAGGTACCTTTCATGAATTAGATTTTATTACTTTTAAGAGAATTTAATTTGATAGAGAATATAGGTAATAAAGTAATATTGTCCTATGATTAGTTTGTTGATGAAATAAATGGTATAGATATATGTGAAATTTAATTCAAACTCTATCAAGTTGATGAAATTTTTTTATATATATAATCCATCGTTAATCTGTTACAAAATTACTTGTTTGCTAAGTTTTTTAATAATACGTCTCTAACATGTCACTAATACATTCTTTGTAGCTAAGTTTTTTTTAAATAATTTGTCGTTAATTTATGGTAAATTGCTCGTAGTAATATTTTTGATAATTTATCGTTAATTGTTCGTAGATAAGTGTTGATAATATGTCATTGTGTATGTAATATATCGCTAAATAGGACTAGCGATGGATTTTTGTTGTTGTCATTTATATATAATTTGTATTTTTGAAGGGTTTTGTTTTCTTCTATTTAATTTTATCTGTCGCTAATTTCTATAACAGAAAGGATAGCTTTATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTACAAGATTTACATCAATCCAAACAGCAGTAAATCTTAATAATTTGAGAAATCAATTGATTAATGGTGGGATTAGCACTAATCTCCAACAACAACAACAAATGAGTGGAAATATTTCTCAATTAATGGGATTGGGATCCTTAGACCCTTCAAATCAACTTAATCTTGATCATGGAC-AAAAATCAAGGCTACCACTTTGGCTTCATCATGAAAATTCAAATTATGGTAAGCATATAAGTTCATCTGAATTTAGTATGTATATATATAAGTGAAAAGTCACTAAAATATCAAAAAAATTCATTTTGACACGTAATTTCGAAAAGTTCAATAAATTAGCACTATTAGTAGATGTTAGATTCTCAAAAAATTAGTGTATTTTGAAGGATGTAAAACATGGTGCAACATCATATTTTATAGAGTCTAAATAACATAAATTAAATGTTTTAATCATCACTATAAGAAAATTATGAATTACATAAAGACTTTTTTAGGAATTAGTATGAAAATTTATAGAAAAATAAGTGAACTATGAAATTTTATACTAATCCCTATGAAAATTTTCATATAATTCACTTTTTTTTTAAAATACATATTCAAAATTAAAATTATGATTTCGTTTCTTTAAGTTACTAGTGAGTTCCAGTTAACTAGGTATGTATATATATATAAAAAAATTCTAATAAATTTTTTTTTATTAAATCGTTGCAATAAGCAATTTTTTAAATAAAAAAATTAAAAATGTTAAAACAGCGATTTTATATATATAAAAAAATTATAATATTTTTTAAAATTTATGTATATAACTTATAAGAAAATATACATTATTTTATAAAAATTAAAAATAAGTAAAGTAATAAATATATTTTCTTCTAAAAAAAGATATTATATTGAATTTAAATTTAAATAATATTTGAATTCAAATAATTAATTTTTTAAAATAAAAAATTAAAGGAGAAAAATTATTGAATTTTTTTTTAAAACAAAATGATATATATATATATATATATATATATATATATATATATATATATATAAAGTTAAAGAGGATCACATGACAATAGTAGACCCTTTGTTTTTATTGTAAATTTTGAAGAAAATATTCACATGTAAATAGTACATCATACTTTCAATTCTATAAATTGGTACTTTCAATCTTTCAATCTTCCAATCCAATCTACTTTCAATCTTCCACAATCTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAGGAAAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAACAATATCATATAATTTAAAATTTATTTTAATTAATTTTATACTTTTATATGAGATTGTTAATAATTTAAAATTTATGTAATATACATACTAATGCCTCATGTCTTCCTGCCATGTGTTGATACCCTTTTTGTACAACATGTTGTGGATTTCCAATGACCATGCGGGTATGCCTCATGTACCAAGGATATCATATAAAAGTATAAAATTAATTAAAATAAATTAAAAATAAAATAAATTTAAACTTGCCTTATAAAGAAAATGCTTTTAAAAACTTTAGAAAATTTGAAGAATAACAAGAATTTTAAGATTGTGGAAGATTGAAAGTAGATTGGATTGGAAGATTGAAAGTACCAATTTATAGAATTGAAAGTATGATGTACTATTTACATGTGAATATTTTCTTCAAAATTTACAATAAAAACAAAGGATCTACTATTGTCATGTGATCCTCTTTAACTTTATATATATATATATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATATTTTTTACCCCTTTTTAGCCTACGTGACATTATCTTGTGGGCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTGTAAAATAAGTTCAGGAGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGCCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTATATATATATATATATATATATATATATATATATATATATATATATATCATTTTGTTTTCAATAATTTTTCTCCTTTAATTTTTTATTTAAAAAAATTAATTATTTGAATTCAAATATTATTTAAATTTAAATTCAATATAATATCTTTTTTTTAGAAAGAAAATATATTTATTACTTTACTTATTTTTAATTTTTTAAAAATAATGTATATTTTCTTATAAGTTATATACATTAATTTTAAAAAATATTATAATTTTTTTATATATATAAAATCGCTGTTTTAACATTTTTAAATTTTTTTTATTTAAAAAATTGCTTATTGCAGCGATTTAATAATTTATTTTTTTTTATAAATCGCTGCTCAGGCAGCGATTTATATTAGAATTTTTTTTTATTTTTATAAATCGCTGCACTGGCAGCGATTTGTAAGAAGAAAAATTTTGAAATCGCTGCTTGGGCAGCGATTTCATTTTTTTATTAATTTTTTTTTTTTTGCAAAATCGCTGCCTCAGCAGCGATTTTACTTTTTCAGGTGAAGTAATCCTGCACCGGCAGCGATTTTACCGTTTTGGTTAATATAAAATTTTATATACCGTTTTGAAATTTTTATTAATATTTTTTACCCTTTGAGTTTCGGACTCATGTATATATGTGTGAAATTTCTTTTATTGTTATTTCAAATTTTGAATCAGTCTTTATTGTGTAGGTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGCCTCATGAGTTGGTACAAGTGGCACCACACGCAAACATGCTAGGCTCGTCTTCGTTACATAAGAATAACAACAACA-ATAACA</genome_strand>
        <mrna_strand>CATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATTAAAAAAAAAGTTTATATTTGTCCAGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTATTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAAAGAGTACAAATGTGATTGTGGCACACTTTTTTCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATAGCTTTATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTACAAGATTTACATCAATCCCAACAGCAACAAATCTTAATAACTTCAGAAATCAATTGATTAATGGTGGGATTAGTACTAATCTCCAACAACAACAACAAATGAGTGGAAATATTTCTCAATTAATGGGATTGGGATCATTAGACCCTTCAAATCAACTTAATCTTGATCATGGACAAAAAAACAAGGCTACCACTTTGGCTTCATCATAACAATGCAAATTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGGCTCATGAATTGGTACAAATGGCACCACATACAAACATGTTAGGCTTGTCTTCGTCACAGAA-CATAAC-ACAACACATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612339" ref_strand="+" ref_description="SGN-E612339 [62100]">
      <seq>ttcaaatcaacttaatcttgatcatggacaaaaaacaaggctaccactttggcttcatcataacaatgcaaattatggtaaccctaatgactttttatcaacaccatcaaccacaacaagcaccttggctcatgaattggtacaaatggcaccacatacaaacatgttaggcttgtcttcgtcacagaacaataacaacaacaacaataatcaatggttcgtgaatgacaatggtggtggtgccatcaccaccacctcgtcatcgatgccacgtgtgctaaaggaggaagaagagaacaaaagtcttagcccaatgtattacaataatagccacatgtcagcaacagcacttttgcaaaaagcatcccaaattggatcaacaattcaccacaacaattcaccactctttagcaatcaatttgggctaatgacctcatctagccttaatatgatgaataattcttcatcatcaagtgctacaaatgtggctattcatgaaaatattcaaggaaataatggattgctaataggggctacaaattcaacatcttttgttgccagcaatgcaaatactttgatgatgatacaagataaagggaagcaaggttacttaacaagagattttcttggtgttggaaggaatgaaaagaggccatttttgcaacaaactcatgagatggccaagtgtgataataataataataataattctaggattatttaataggttattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="13117" stop="17061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13417" g_stop="13493" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13494" i_stop="16092" i_length="2599">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16093" g_stop="16761" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="736" r_length="659" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E612339" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13417" e_stop="13493"/>
          <exon e_start="16093" e_stop="16761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATCAACTTAATCTTGATCATGGACAAAAATCAAGGCTACCACTTTGGCTTCATCATGAAAATTCAAATTATGGTAAGCATATAAGTTCATCTGAATTTAGTATGTATATATATAAGTGAAAAGTCACTAAAATATCAAAAAAATTCATTTTGACACGTAATTTCGAAAAGTTCAATAAATTAGCACTATTAGTAGATGTTAGATTCTCAAAAAATTAGTGTATTTTGAAGGATGTAAAACATGGTGCAACATCATATTTTATAGAGTCTAAATAACATAAATTAAATGTTTTAATCATCACTATAAGAAAATTATGAATTACATAAAGACTTTTTTAGGAATTAGTATGAAAATTTATAGAAAAATAAGTGAACTATGAAATTTTATACTAATCCCTATGAAAATTTTCATATAATTCACTTTTTTTTTAAAATACATATTCAAAATTAAAATTATGATTTCGTTTCTTTAAGTTACTAGTGAGTTCCAGTTAACTAGGTATGTATATATATATAAAAAAATTCTAATAAATTTTTTTTTATTAAATCGTTGCAATAAGCAATTTTTTAAATAAAAAAATTAAAAATGTTAAAACAGCGATTTTATATATATAAAAAAATTATAATATTTTTTAAAATTTATGTATATAACTTATAAGAAAATATACATTATTTTATAAAAATTAAAAATAAGTAAAGTAATAAATATATTTTCTTCTAAAAAAAGATATTATATTGAATTTAAATTTAAATAATATTTGAATTCAAATAATTAATTTTTTAAAATAAAAAATTAAAGGAGAAAAATTATTGAATTTTTTTTTAAAACAAAATGATATATATATATATATATATATATATATATATATATATATATATATAAAGTTAAAGAGGATCACATGACAATAGTAGACCCTTTGTTTTTATTGTAAATTTTGAAGAAAATATTCACATGTAAATAGTACATCATACTTTCAATTCTATAAATTGGTACTTTCAATCTTTCAATCTTCCAATCCAATCTACTTTCAATCTTCCACAATCTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAGGAAAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAACAATATCATATAATTTAAAATTTATTTTAATTAATTTTATACTTTTATATGAGATTGTTAATAATTTAAAATTTATGTAATATACATACTAATGCCTCATGTCTTCCTGCCATGTGTTGATACCCTTTTTGTACAACATGTTGTGGATTTCCAATGACCATGCGGGTATGCCTCATGTACCAAGGATATCATATAAAAGTATAAAATTAATTAAAATAAATTAAAAATAAAATAAATTTAAACTTGCCTTATAAAGAAAATGCTTTTAAAAACTTTAGAAAATTTGAAGAATAACAAGAATTTTAAGATTGTGGAAGATTGAAAGTAGATTGGATTGGAAGATTGAAAGTACCAATTTATAGAATTGAAAGTATGATGTACTATTTACATGTGAATATTTTCTTCAAAATTTACAATAAAAACAAAGGATCTACTATTGTCATGTGATCCTCTTTAACTTTATATATATATATATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATATTTTTTACCCCTTTTTAGCCTACGTGACATTATCTTGTGGGCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTGTAAAATAAGTTCAGGAGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGCCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTATATATATATATATATATATATATATATATATATATATATATATATATCATTTTGTTTTCAATAATTTTTCTCCTTTAATTTTTTATTTAAAAAAATTAATTATTTGAATTCAAATATTATTTAAATTTAAATTCAATATAATATCTTTTTTTTAGAAAGAAAATATATTTATTACTTTACTTATTTTTAATTTTTTAAAAATAATGTATATTTTCTTATAAGTTATATACATTAATTTTAAAAAATATTATAATTTTTTTATATATATAAAATCGCTGTTTTAACATTTTTAAATTTTTTTTATTTAAAAAATTGCTTATTGCAGCGATTTAATAATTTATTTTTTTTTATAAATCGCTGCTCAGGCAGCGATTTATATTAGAATTTTTTTTTATTTTTATAAATCGCTGCACTGGCAGCGATTTGTAAGAAGAAAAATTTTGAAATCGCTGCTTGGGCAGCGATTTCATTTTTTTATTAATTTTTTTTTTTTTGCAAAATCGCTGCCTCAGCAGCGATTTTACTTTTTCAGGTGAAGTAATCCTGCACCGGCAGCGATTTTACCGTTTTGGTTAATATAAAATTTTATATACCGTTTTGAAATTTTTATTAATATTTTTTACCCTTTGAGTTTCGGACTCATGTATATATGTGTGAAATTTCTTTTATTGTTATTTCAAATTTTGAATCAGTCTTTATTGTGTAGGTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGCCTCATGAGTTGGTACAAGTGGCACCACACGCAAACATGCTAGGCTCGTCTTCGTTACATAAGAATAACAACAACAATAACAATAATCAATGGTTCGTCAATGACGATGGTGGTGATGCCATCATCACCACCTCGTCATCGATGCTGATGCCACGTGTGCTAAAAGAGGAAGAAGAGAACAAAACTCTTAGCCCAATGTATTACAATAATAGCCACATGTCAGCAACAGCACTTTTGCAAATAGCAGCCCAGATTGGATCAACAAGGAGCAACAACAATTCACCACTCTTTAGCAATCAATTTGGGCTAATGACCTCATCTAGCCTTAGTATGAAGAATAGTTCTTCATCATCAAGTGCCTCAAATGTGGCTATTCATGAAAATGTTCAAGGAAATAATGGATTGCTAATAGGGGCTACAAATTCAACAACTTTTGTGGCTAACAATGCAAATACTTTGATGATGATGCAAGATAAAGGGAAGCAAGGTAACTTAACAAGAGATTTTCTTGGTGGTGGAAGGAATGAAAAGAGGCTATTTTTGCAACAAACTCATGAGATGGCCAAGTTTGAAAATAATAAATAATAATAATTCTAGGATTTTTTAATAGGTTATTAGA</genome_strand>
        <mrna_strand>TTCAAATCAACTTAATCTTGATCATGGACAAAAAACAAGGCTACCACTTTGGCTTCATCATAACAATGCAAATTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGGCTCATGAATTGGTACAAATGGCACCACATACAAACATGTTAGGCTTGTCTTCGTCACAGAACAATAACAACAAC---AACAATAATCAATGGTTCGTGAATGACAATGGTGGTGGTGCCATCACCACCACCTCG---TC-AT-C-GATGCCACGTGTGCTAAAGGAGGAAGAAGAGAACAAAAGTCTTAGCCCAATGTATTACAATAATAGCCACATGTCAGCAACAGCACTTTTGCAAAAAGCATCCCAAATTGGATCAACAATTCACCACAACAATTCACCACTCTTTAGCAATCAATTTGGGCTAATGACCTCATCTAGCCTTAATATGATGAATAATTCTTCATCATCAAGTGCTACAAATGTGGCTATTCATGAAAATATTCAAGGAAATAATGGATTGCTAATAGGGGCTACAAATTCAACATCTTTTGTTGCCAGCAATGCAAATACTTTGATGATGATACAAGATAAAGGGAAGCAAGGTTACTTAACAAGAGATTTTCTTGGTGTTGGAAGGAATGAAAAGAGGCCATTTTTGCAACAAACTCATGAGATGGCCAAGTGTGATAATAAT-AATAATAATAATTCTAGGATTATTTAATAGGTTATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612139" ref_strand="+" ref_description="SGN-E612139 [61898]">
      <seq>aaacaaggctaccactttggcttcatcantaacaagtgcaaattatggtaaccctaatgactttttatcaacaccatcaaccacaacaagcaccttggctcatgaattggtacaaatggcaccacatacaaacatgttaggcttgtcttcgtcacagaacaataacaacaacaacaataatcaatggttcgtgaatgacaatggtggtggtgccatcaccaccacctcgtcatcgatgccacgtgtgctaaaggaggaagaagagaacaaaagtcttagcccaatgtattacaataatagccacatgtcagcaacagcacttttgcaaaaagcatcccaaattggatcaacaattcaccacaacaattcaccactctttagcaatcaatttgggctaatgacctcatctagccttaatatgatgaataattcttcatcatcaagtgctacaaatgtggctattcatgaaaatattcaaggaaataatggattgctaataggggctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="13149" stop="16864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13449" g_stop="13493" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.822"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13494" i_stop="16092" i_length="2599">
            <donor d_prob="0.973" d_score="0.82"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16093" g_stop="16571" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="517" r_length="470" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E612139" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13449" e_stop="13493"/>
          <exon e_start="16093" e_stop="16571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGGCTACCACTTTGGCTTCATCATGAA-AA-TTCAAATTATGGTAAGCATATAAGTTCATCTGAATTTAGTATGTATATATATAAGTGAAAAGTCACTAAAATATCAAAAAAATTCATTTTGACACGTAATTTCGAAAAGTTCAATAAATTAGCACTATTAGTAGATGTTAGATTCTCAAAAAATTAGTGTATTTTGAAGGATGTAAAACATGGTGCAACATCATATTTTATAGAGTCTAAATAACATAAATTAAATGTTTTAATCATCACTATAAGAAAATTATGAATTACATAAAGACTTTTTTAGGAATTAGTATGAAAATTTATAGAAAAATAAGTGAACTATGAAATTTTATACTAATCCCTATGAAAATTTTCATATAATTCACTTTTTTTTTAAAATACATATTCAAAATTAAAATTATGATTTCGTTTCTTTAAGTTACTAGTGAGTTCCAGTTAACTAGGTATGTATATATATATAAAAAAATTCTAATAAATTTTTTTTTATTAAATCGTTGCAATAAGCAATTTTTTAAATAAAAAAATTAAAAATGTTAAAACAGCGATTTTATATATATAAAAAAATTATAATATTTTTTAAAATTTATGTATATAACTTATAAGAAAATATACATTATTTTATAAAAATTAAAAATAAGTAAAGTAATAAATATATTTTCTTCTAAAAAAAGATATTATATTGAATTTAAATTTAAATAATATTTGAATTCAAATAATTAATTTTTTAAAATAAAAAATTAAAGGAGAAAAATTATTGAATTTTTTTTTAAAACAAAATGATATATATATATATATATATATATATATATATATATATATATATATAAAGTTAAAGAGGATCACATGACAATAGTAGACCCTTTGTTTTTATTGTAAATTTTGAAGAAAATATTCACATGTAAATAGTACATCATACTTTCAATTCTATAAATTGGTACTTTCAATCTTTCAATCTTCCAATCCAATCTACTTTCAATCTTCCACAATCTTAAAATTCTTGTTATTCTTCAAATTTTCTAAAGTTTTTAAAAGCATTTTCTTTATAAGGAAAGTTTAAATTTATTTTATTTTTAATTTATTTTAATTAATTTTATACTTTTATATGATATTGTTGATATATTCAACAATATCATATAATTTAAAATTTATTTTAATTAATTTTATACTTTTATATGAGATTGTTAATAATTTAAAATTTATGTAATATACATACTAATGCCTCATGTCTTCCTGCCATGTGTTGATACCCTTTTTGTACAACATGTTGTGGATTTCCAATGACCATGCGGGTATGCCTCATGTACCAAGGATATCATATAAAAGTATAAAATTAATTAAAATAAATTAAAAATAAAATAAATTTAAACTTGCCTTATAAAGAAAATGCTTTTAAAAACTTTAGAAAATTTGAAGAATAACAAGAATTTTAAGATTGTGGAAGATTGAAAGTAGATTGGATTGGAAGATTGAAAGTACCAATTTATAGAATTGAAAGTATGATGTACTATTTACATGTGAATATTTTCTTCAAAATTTACAATAAAAACAAAGGATCTACTATTGTCATGTGATCCTCTTTAACTTTATATATATATATATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATATTTTTTACCCCTTTTTAGCCTACGTGACATTATCTTGTGGGCCAACGATGGTTGACTTTTTTTTTTCAAACTAGTGCCACGTAGGCTAAAAAGGGGTAGAAAATTACTTGTAAAATAAGTTCAGGAGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGGGATTTCGGCCATAGGTTGAGGGGGTACTTGTGCATTTTCCCTATATATATATATATATATATATATATATATATATATATATATATATATCATTTTGTTTTCAATAATTTTTCTCCTTTAATTTTTTATTTAAAAAAATTAATTATTTGAATTCAAATATTATTTAAATTTAAATTCAATATAATATCTTTTTTTTAGAAAGAAAATATATTTATTACTTTACTTATTTTTAATTTTTTAAAAATAATGTATATTTTCTTATAAGTTATATACATTAATTTTAAAAAATATTATAATTTTTTTATATATATAAAATCGCTGTTTTAACATTTTTAAATTTTTTTTATTTAAAAAATTGCTTATTGCAGCGATTTAATAATTTATTTTTTTTTATAAATCGCTGCTCAGGCAGCGATTTATATTAGAATTTTTTTTTATTTTTATAAATCGCTGCACTGGCAGCGATTTGTAAGAAGAAAAATTTTGAAATCGCTGCTTGGGCAGCGATTTCATTTTTTTATTAATTTTTTTTTTTTTGCAAAATCGCTGCCTCAGCAGCGATTTTACTTTTTCAGGTGAAGTAATCCTGCACCGGCAGCGATTTTACCGTTTTGGTTAATATAAAATTTTATATACCGTTTTGAAATTTTTATTAATATTTTTTACCCTTTGAGTTTCGGACTCATGTATATATGTGTGAAATTTCTTTTATTGTTATTTCAAATTTTGAATCAGTCTTTATTGTGTAGGTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGCCTCATGAGTTGGTACAAGTGGCACCACACGCAAACATGCTAGGCTCGTCTTCGTTACATAAGAATAACAACAACAATAACAATAATCAATGGTTCGTCAATGACGATGGTGGTGATGCCATCATCACCACCTCGTCATCGATGCTGATGCCACGTGTGCTAAAAGAGGAAGAAGAGAACAAAACTCTTAGCCCAATGTATTACAATAATAGCCACATGTCAGCAACAGCACTTTTGCAAATAGCAGCCCAGATTGGATCAACAAGGAGCAACAACAATTCACCACTCTTTAGCAATCAATTTGGGCTAATGACCTCATCTAGCCTTAGTATGAAGAATAGTTCTTCATCATCAAGTGCCTCAAATGTGGCTATTCATGAAAATGTTCAAGGAAATAATGGATTGCTAATAGGGGCTACAAATTCAACA</genome_strand>
        <mrna_strand>AAACAAGGCTACCACTTTGGCTTCATCANTAACAAGTGCAAATTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGGCTCATGAATTGGTACAAATGGCACCACATACAAACATGTTAGGCTTGTCTTCGTCACAGAACAATAACAACAAC---AACAATAATCAATGGTTCGTGAATGACAATGGTGGTGGTGCCATCACCACCACCTCG---TC-AT-C-GATGCCACGTGTGCTAAAGGAGGAAGAAGAGAACAAAAGTCTTAGCCCAATGTATTACAATAATAGCCACATGTCAGCAACAGCACTTTTGCAAAAAGCATCCCAAATTGGATCAACAATTCACCACAACAATTCACCACTCTTTAGCAATCAATTTGGGCTAATGACCTCATCTAGCCTTAATATGATGAATAATTCTTCATCATCAAGTGCTACAAATGTGGCTATTCATGAAAATATTCAAGGAAATAATGGATTGCTAATAGGGGCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426883" ref_strand="+" ref_description="SGN-E426883 [STM-47-I4]">
      <seq>atcattttttttaacttttagaattcacaaatctgaaattttgattctgcctctgattatttgatggattttttttctggaggcgacgctctcaactactctcttttgttgtcttcaacatctacgaatccaattaaggaaaaacaaaatctaataacctattaaataatcctagaattattattattattattatcaaacttggccatctcatgagtttgttgcaaaaatggcctcttttcattccttccaacaccaagaaaatctcttgttaagtaaccttgcttccctttatcttgtatcatcatcaaagtatttgcattgctggcaacaaaagatgttgaatttgtagcccctattagcaatccattatttccttgaatattttcatgaatagccacatttgtagcacttgatgatgaagaattattcatcatattaaggctagatgaggtcattagcccaaattgattgctaaagagtggtgaattgttgtggtgaattgttgatccaatttgggatgctttttgcaaaagtgctgttgctgacatgtggctattattgtatacattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="17183" stop="16033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16859" g_stop="16333" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="576" r_length="523" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E426883" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16859" e_stop="16333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATTTGGTGGATTTTTTTTCTAGAGGTGACATTCTCAACTACTTTTTTTTTGGTGTCTTCAACATCGTACGATTCCAATTAAGTGAACGAAAAATCTAATAACCTATTAAAAAATCCTAGAATTATTATTATTTATTATTTTCAAACTTGGCCATCTCATGAGTTTGTTGCAAAAATAGCCTCTTTTCATTCCTTCCACCACCAAGAAAATCTCTTGTTAAGTTACCTTGCTTCCCTTTATCTTGCATCATCATCAAAGTATTTGCATTGTTAGCCACAAAAGTTGTTGAATTTGTAGCCCCTATTAGCAATCCATTATTTCCTTGAACATTTTCATGAATAGCCACATTTGAGGCACTTGATGATGAAGAACTATTCTTCATACTAAGGCTAGATGAGGTCATTAGCCCAAATTGATTGCTAAAGAGTGGTGAATTGTTGTTGCTCCTTGTTGATCCAATCTGGGCTGCTATTTGCAAAAGTGCTGTTGCTGACATGTGGCTATTATTGTAATACATTGGGC</genome_strand>
        <mrna_strand>TGATTATTTGATGGATTTTTTTTCTGGAGGCGACGCTCTCAACTAC-TCTCTTTTGTTGTCTTCAACATC-TACGAATCCAATTAAGGAAAAACAAAATCTAATAACCTATTAAATAATCCTAGAATTATTATTA-TTATTATTATCAAACTTGGCCATCTCATGAGTTTGTTGCAAAAATGGCCTCTTTTCATTCCTTCCAACACCAAGAAAATCTCTTGTTAAGTAACCTTGCTTCCCTTTATCTTGTATCATCATCAAAGTATTTGCATTGCTGGCAACAAAAGATGTTGAATTTGTAGCCCCTATTAGCAATCCATTATTTCCTTGAATATTTTCATGAATAGCCACATTTGTAGCACTTGATGATGAAGAATTATTCATCATATTAAGGCTAGATGAGGTCATTAGCCCAAATTGATTGCTAAAGAGTGGTGAATTGTTGTGGTGAATTGTTGATCCAATTTGGGATGCTTTTTGCAAAAGTGCTGTTGCTGACATGTGGCTATTATTGT-ATACATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424879" ref_strand="-" ref_description="SGN-E424879 [STM-44-A6]">
      <seq>tcccggaaacttcccgttaaacgtaacgacgtccggtaatcaagttaatgtctctaccggagttgatgatgctactgtttctaacacaatttatactgatggtcagcttgcagtttatcaggttgataaagtgcttcaacctatgagtatctttgctgctccttctccggcagtggctccggctccggcgacattgaaaccaaagggcaagtctccggcaggattgagccctacctccggcaatgacgactcgccggcggataattccggtgttgagaggattgccatgcgcggcacggcggttttggtttttggaatttctttgtttgtattgttgtaaattttagaaaattaacggtgaggattcgttgtgatttttttgatgagttgattcaacggttgtgattcatttgaataattactatttcattttaaattcttctttttcatgtatttttttttacctttattatttttggatatattcatctatgtaaactactaagaaacaattttttgatgtatctacaaatgtaatattttataaaaaaaaaggttagtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23539" stop="21261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23239" g_stop="23119" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21576" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="530" r_length="409" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="554"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E424879" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424879" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23239" e_stop="23119"/>
          <exon e_start="21989" e_stop="21576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGTTTTGTTTTTTGGAATTTCTTTGTTTGTAGTGTTGTAAATTTTAGAAAA-T-GCGGTGAGGATTCGTTGTGATTTTTTTGATGAGTTGATTCAACGGTTGTGATTCATTTGAATAATTACCATTTCATTTCAAATTCTTCTTTTTTATGTTTTTATTTTTTTTACCTTTTATTATTTTTGGGTATATTCATCTATGTAAACTACTAAGAAACAATTTTTTGATGTATCTACA</genome_strand>
        <mrna_strand>TCCCGGAAACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTTAATGTCTCTACCGGAGTTGATGATGCTACTGTTTCTAACACAATTTATACTGATGGTCAGCTTGCAGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCTTCTCCGGCAGTGGCTCCGGCTCCGGCGACATTGAAACCAAAGGGCAAGTCTCCGGCAGGATTGAGCCCTACCTCCGGCAATGACGAC-T--CGCCGGCGGATAATTCCGGTGTTGAGAGGATTGCCATGCGCGGCACGGCGGTTTTGGTTTTTGGAATTTCTTTGTTTGTATTGTTGTAAATTTTAGAAAATTAACGGTGAGGATTCGTTGTGATTTTTTTGATGAGTTGATTCAACGGTTGTGATTCATTTGAATAATTACTATTTCATTTTAAATTCTTCTTTTTCATG--TAT-TTTTTTTTACC-TTTATTATTTTTGGATATATTCATCTATGTAAACTACTAAGAAACAATTTTTTGATGTATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586658" ref_strand="+" ref_description="SGN-E586658 [75491]">
      <seq>aaaaaattgtttcttagtagtttacatagatgaatatacccaaaaataataaaggtaaaaaaaaatacatgaaaaagaagaatttaaaatgaaatagtaattattcaaatgaatcacaaccgttgaatcaactcatcaaaaaaatcacaacgaatcctcaccgttcattttctaaaatttacaacaatacaaacaaagaaattccaaaaaccaaaaccgccgtgccgcgcatggcaatcctctcaacaccggaattatccgccggcgagtcgtcattgccggaggtagggctcaatcctgccggagacttgccctttggtttcaatgtcgccggagccggagccactgccggagaaggagcagcaaagatactcataggttgaagcactttatcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="21288" stop="22290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21588" g_stop="21990" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E586658" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21588" e_stop="21990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGTTTCTTAGTAGTTTACATAGATGAATATACCCAAAAATAATAAAAGGTAAAAAAAATAAAAACATAAAAAAGAAGAATTTGAAATGAAATGGTAATTATTCAAATGAATCACAACCGTTGAATCAACTCATCAAAAAAATCACAACGAATCCTCACCG--CATTTTCTAAAATTTACAACACTACAAACAAAGAAATTCCAAAAAACAAAACCGTTGTGCCGTGCATGGCAATCCTCTCAACACCGGAATCATCCGCCGCCGGCAAGTCGTCGTTGCCGGAGGTAGGGTTCAATCCTGCCGGAGACTTGCTCTTTGGTTTCAACGTTGCCGGAGTCGGTGCCATTGCCGGAGCCGGAGCAGCAAAGATACTCATAGGTTGAAGCACTTTATCAACC</genome_strand>
        <mrna_strand>AAAAAATTGTTTCTTAGTAGTTTACATAGATGAATATACCCAAAAATAAT-AAAGGT--AAAAAA-AAATACATGAAAAAGAAGAATTTAAAATGAAATAGTAATTATTCAAATGAATCACAACCGTTGAATCAACTCATCAAAAAAATCACAACGAATCCTCACCGTTCATTTTCTAAAATTTACAACAATACAAACAAAGAAATTCCAAAAACCAAAACCGCCGTGCCGCGCATGGCAATCCTCTCAACACCGGAATTAT---CCGCCGGCGAGTCGTCATTGCCGGAGGTAGGGCTCAATCCTGCCGGAGACTTGCCCTTTGGTTTCAATGTCGCCGGAGCCGGAGCCACTGCCGGAGAAGGAGCAGCAAAGATACTCATAGGTTGAAGCACTTTATCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347855" ref_strand="+" ref_description="SGN-E347855 [cTOF-31-A13]">
      <seq>tcatttccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcaggttgataaagtgcttcaacctatgagtatctttgctgctccggctccggcaatggcaccgactccggcaacgttgaaaccaaagagcaagtctccggcaggattgaaccctacctccggcaacgacgacttgccggcggcggatgaattccggtgttgagaggattgccatgcacggcacaacgggntttgttttttggaatttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23965" stop="21484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23665" g_stop="23119" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21784" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="755" r_length="208" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E347855" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23665" e_stop="23119"/>
          <exon e_start="21989" e_stop="21784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATG-ATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAAC-GGTTTTGTTTTTTGGAATTTCTTT</genome_strand>
        <mrna_strand>TCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGAATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGGNTTTGTTTTTTGGAATTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453396" ref_strand="+" ref_description="SGN-E453396 [cSTS-19-H24]">
      <seq>atttccctctatatcccattcttgaataaaaatgaaacaccaaatttttattattattattatcctccaattttcaattttaacactatctcaaacacccccttctggtccaacaaacataacgcaaatactagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaaggcatgactgtttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaattcattaagtgcacaacaacaagttcaattagtacaatttcatgttttaccaaattttatttcaatgtcacaatttcaaactattagtaaccctttaagaacacaagctggtgatgctactcccggaaacttcccgttaaacgtaacgacgtccggtaatcaagttaatgtctctaccggagttgatgatgctactgtttctaacacaatttatactgatggtcagcttgcagtttatcaggttgataaagtgcttcaacctatgagtatctttgctgctccttctccggcagtggctccggctccggcgacattgaaaccaaagggcaagtctccggcaggattgagccctacctncnngcatgacgactcgccggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23937" stop="21573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23629" g_stop="23119" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="529" r_length="502" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21852" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="667" r_length="138" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E453396" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23629" e_stop="23119"/>
          <exon e_start="21989" e_stop="21852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCG</genome_strand>
        <mrna_strand>AAAAATGAAACACCAAA-T-TTTTATT-ATTATTATTATCCTCCAATTTTCAATTTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATAACGCAAATACTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATC-----AA-GGCATGACTGTTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATTCATTAAGTGCACAACAACAAGTTCAATTAGTACAATTTCATGTTTTACCAAATTTTATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTAAGAACACAAGCTGGTGATGCTACTCCCGGAAACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTTAATGTCTCTACCGGAGTTGATGATGCTACTGTTTCTAACACAATTTATACTGATGGTCAGCTTGCAGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCTTCTCCGGCAGTGGCTCCGGCTCCGGCGACATTGAAACCAAAGGGCAAGTCTCCGGCAGGATTGAGCCCTACCTNCNNGCATGACGACTCGCCGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424878" ref_strand="+" ref_description="SGN-E424878 [STM-44-A6]">
      <seq>atttccctctatatcccattcttgaataaaaatgaaacaccaaatttttattattattattatcctccaattttcaattttaacactatctcaaacacccccttctggtccaacaaacataacgcaaatactagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaaggcatgactgtttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaattcattaagtgcacaacaacaagttcaattagtacaatttcatgttttaccaaattttatttcaatgtcacaatttcaaactattagtaaccctttaagaacacaagctggtgatgctactcccggaaacttcccgttaaacgtaacgacgtccggtaatcaagttaatgtctctaccggagttgatgatgctactgtttctaacacaatttatactgatggtcagcttgcagtttatcaggttgataaagtgcttcaacctatgaatatctttgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23937" stop="21651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23629" g_stop="23119" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="529" r_length="502" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21951" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="568" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E424878" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23629" e_stop="23119"/>
          <exon e_start="21989" e_stop="21951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCT</genome_strand>
        <mrna_strand>AAAAATGAAACACCAAA-T-TTTTATT-ATTATTATTATCCTCCAATTTTCAATTTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATAACGCAAATACTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATC-----AA-GGCATGACTGTTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATTCATTAAGTGCACAACAACAAGTTCAATTAGTACAATTTCATGTTTTACCAAATTTTATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTAAGAACACAAGCTGGTGATGCTACTCCCGGAAACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTTAATGTCTCTACCGGAGTTGATGATGCTACTGTTTCTAACACAATTTATACTGATGGTCAGCTTGCAGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAATATCTTTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341604" ref_strand="+" ref_description="SGN-E341604 [cTOE-23-I9]">
      <seq>aagaactacatcatttccttcttgaattttttttattttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcaggttgataaagtgcttcaacctatgagtatctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23975" stop="21654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23675" g_stop="23119" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21989" g_stop="21954" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="594" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E341604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23675" e_stop="23119"/>
          <exon e_start="21989" e_stop="21954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTA-TTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAGGTAATCGTTTTACGTTTATTTGGTACGATGAAAAATATTTTTTTTTTTTTATGAAAAATAACTTCTCTATGTTACATTATAAGGTAGGGGTAAACATGTAATGTTACGATTAGGGTTACACTGAATATTTTCTTTTCGTTGTTGTTGTTCATTGTGAGAAAATGTTTTAAATTTTGGGGATAGGTCATTTTTTCAATTGATTGAACTCTTAAATATTATTTTAATTATTTTCAAGATCGAATTGTAGTTTTTTCTTACGTAGTGGAAACGCCCTACAATTTGAAGTTTTACGCTTCAGGCAAGAAATGTTTTTCTTTTAAAAAAAAAACTAAAAGTTTGCTAATTAATATTATTGTTTTGGATCCTTGAAGAAATGTTTTAGAGGGAAATATTTTTTTGCTTACCAATCAAATACCGAGAAACATTCTACCGGCGAATTAATAGTTTCAGAAAATAAGCTATGTTGCTCGAATTTTTTAATAATGTCGACAGATATGCATCGAATCCTCTAAAGATAATGTATTTTTGAAGAAAACAAGTTATGTTGCTCGAATTTTTCAATAATATCGACAGATATGCATCGAATCCTCTAAAGATAGTGTATTTTTAAAAGATCTGATACGAATATAACAACCTTGTGAAGAGTTCGAGCAATTTAAATTTAATAGATTGTTTTTAAAATAATCTTTTTCTAATTCAATGTTGACAATTAGTCAAAGGGTACAAGTGAGTCAATAATACAAATAGAGGATGATTGTTGCAAAACAGGTTAATGAAGGGTATTTTAGACCTTTTACAATAGCTTCAGGGCATTTTTGCTTTTTTCCGTTGATAAAAACATATTAATTGGACGTTAATATCGATAGATATAAATTCTTTAAGATTTTGTTGGACGTTAATACCCTTTTAAAAAAAGAACTAATTTATCTTTTCACATTAATTGACATGCAAAGATGTAATATTATAATGAGAGTATGTATATATAAGAATTTTTACACCATTATATGGTCCTTAACAATTTTAGTAGGAGATAACATGTTTTATTTTCGAGATAAATTTTTTTGACATTTTATAAGAACGTATATTTGTAAATATTTTTTCGATGATCTAATAGTGTAATAATTATTAGGTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCT</genome_strand>
        <mrna_strand>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346132" ref_strand="+" ref_description="SGN-E346132 [cTOF-34-M9]">
      <seq>gaaactacatcatttccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagacttcccgttaaacgtaacgacgtccggtaatcaagtcaatgtctctaccggagttgatgatgctactattgctaacacaatttatactgatggtcagcttgctgtttatcangttgataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23972" stop="22817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23674" g_stop="23119" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E346132" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23674" e_stop="23119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG</genome_strand>
        <mrna_strand>GAAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725952" ref_strand="+" ref_description="SGN-E725952 [LA08DD04]">
      <seq>ccttcttgaattttttttatttttttttaaaaaaatgaaacaccaaattatttttttaattattatcatcctccaattttcaaccttaacactatctcaaacacccccttctggtccaacaaacatcacacaaatcctagaaaaagcaggccaattcacaacattaattagactaatgaaagtatcacaagttagtgatcaaatcaacacacaattaaacaattcaaatcaagggaatgggatgactatttttgcaccaacagataatgcattttctagcctaaaatcaggcacaataaatacactaagtgcacaacaacaagttcaattggtgcaatttcatgttttaccaaatttcatttcaatgtcacaatttcaaactattagtaaccctttgagaacacaagctggtgattctactcccggagactgcccgttnaacgtatcgacgtccggtaatcaagtcaatgtctctcccggagttgatgatgctactattgctaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="23959" stop="22852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23659" g_stop="23152" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E725952" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23659" e_stop="23152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACA</genome_strand>
        <mrna_strand>CCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTGCCCGTTNAACGTATCGACGTCCGGTAATCAAGTCAATGTCTCTCCCGGAGTTGATGATGCTACTATTGCTAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268794" ref_strand="+" ref_description="SGN-E268794 [cLEM-4-D17]">
      <seq>aatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagatattagcaggtctattgagtccatatgatggtttcttgtatgtggagaggccaaggagctttgtgtatcagaatcctgatcatcaggtcgtgatgccaacagtggaagctgatgtcgcttttggtcttggtaaattgaacttaacaccaaatgagattaagactagggtggcaaaagctttggatgcagttgggatgtatgaatattttaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30533" stop="27051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30233" g_stop="30091" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29819" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="318" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29818" i_stop="28966" i_length="853">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28965" g_stop="28879" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="405" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28878" i_stop="27477" i_length="1402">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27476" g_stop="27351" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="531" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E268794" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30233" e_stop="30091"/>
          <exon e_start="29993" e_stop="29819"/>
          <exon e_start="28965" e_stop="28879"/>
          <exon e_start="27476" e_stop="27351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAGGTATATATATCTAGGACCATTGTTTTTTGGTTGTTAGTATGTTAGAATAGATACGAATGTGTGGAGGTCGAGGATTAGCTTAGAAGACTAGTAGTAGGTAATTTCGCCTTTTTTTAAACCAGCAGTTTTAGTATTATTTGGGAAGATGTGATTATACATGACATGTCGCAGTTGAAGGTTATCGAGTATATGACATATGGAGATTGTGGATTACATAGATTAAGTTAGAACTTAGAAGTATAGCTAGTGGTTTAGCTTTTTCTCGCTTATCCTTCCGTACTAGTAGTCGTAGTAATTTTCCTGTAGTTTCTTGTCCTTCGATATATGTTAGTTACTTTCTATTGTCTCTTGTACTTTGATCATCACACTATTTTATTGTAGTTTATTTTTTTTGTTTGTGATGCTTTTTATAGTATCTTCTTCGATATGTTTTTTCATGAGCAGAGGGTCTATTGGATAAAACTTCTCTACCTCCCAAGGTAGAGGTAAGGTCTGCTTACACTCTACCTTCCCGAGCCCCACTTTTGGTATTATATTTGGGTATTTTAATGTATTTTTGTTATTTTATTATTTTCGTATTTCTCATTCTTAGTTTTCTAATACTACTTGTTGTCTCTTATGCTTTGATTTTTTCTTACTATCTTGCTGTTGTTACTACTTATGTTTTCATCAATGTTGTGTTTATATTTTTGTTGCTCCGAGGGTCTATCAGAAACTACCTATTTACCTGCACAAGGTAAGGGTAAGGTTTGCCTACCCTCGCCAAACCCCACTTGTGGAATTACATTGGTATGTTGTTGTAGTTTGTCAGAATTAATGGGTTTTGTTCTTTTTTTGGGTGAAATTGTTTCAGATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAGGTGTACTTACTTGAAGCAATTTTCAGTTTTTTCGTTTTAAGTTGCCTTTAGGCTTTAGAGGGTAATGCTGCCTAATTATCAGTCGTCTTCGGATTTGTGGCCCTCTTTTGTGGGTTAAATTGGATGATTAAGCGAGAATGTTTGGATTCCCGTGTTGTGCTGATGAATGAATTGTAAGATTAATGGTGTAAAATTCGAGATTCAAGATACTTATCACAACAACAACAACAACAACAACTTATACACCTCAATTCCAATCTAGTCTGCCAGCTATATAAATCTTCACTATCCATGTCACTCTATTTAAACTCGTCTCGATCCAATCTTTGAAAAAAAAAGGGATTCCTATCAAACCAATTCAATAACTGAGAATTGGAGTTTAATGGAATCACTGCGAATGCATGTAAAACACTAGGGGAACCTAAAGATGTTGCCTAATGGTCAATTAAGAGGGTGAAAACCACGGAAGATAAGTTCAAAAATGAGCATAGACCAAAAAGAAGGCCTAGGTGATCTTTTTTCCTTTGCTTAAGCCAACGAGTTACTAGGTACCTGTGATGGTGTGAAATAACATGTACCTAGTGAAATAGTCGAGATGCGTATAAGTTGGCTCAGACACTGACATTATCACAAAGAGAATGTAAATCATGAGTGAACTACAAAAGATTGAGTGCTTCATCTTGTATAAGCTTGATTTCATATCAGAGAATCAAGTCCCCTTGATAACTATCCTACTGATGTAATTATGCTTTTGGGTTTTCTTGCTTTTGTTGAACTATATCTCAGTCGAGTTTAGATTTGGAAAGATCATACTTTTGAAGAAATTAGGCAATTTGCCATCATAAGGACTAAAATGTCATTATAGAACTTCTATTGTAGCCCTGTAAGTAGGCAGAATCTGGAAAGTTCTTAACTTTATACATCCGTATTGCTGATTATACTGGTTTGTAACTCTGCATGTCCATTACTTTGGGTTGATAGTGCAGTTTATCCATCTTTGTAAAACCTCCAGAATATGTGGTTGCAAAGTCCTCATCATTTTAGCTTTGCACTCATGAGTCATTTAGTAGCACAAGTGTCTGTCATGATTCCAAACTCTGCATTTACTGATTCGAGAATGCGAATCTATAGAGTTTTTATTACATTGGCCCATTTATTTTTTGTATGGTAATTCTACAAGGCTTCTTATCATAGACTCACATGCTTTTGGCATGATGAGTTCACGAGGTCTCTGCAAAACAGATGTTGTGCTTGGTGCGGCTAAAGCAGAGAGCCACATATGCCGTTATTTGTTATGTTATTTTGCCTGGATCGCTGGATGGTTTTTATGAATTGGACTTTCCATGACCACATATTATTCTGCTCTGAAATGCATGGCCTTCTTTATTTTTTGTGTTTACAGGTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</genome_strand>
        <mrna_strand>AATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGCAGGTCTATTGAGTCCATATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282312" ref_strand="+" ref_description="SGN-E282312 [cLER-18-E1]">
      <seq>acatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30540" stop="29515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30240" g_stop="30091" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29819" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="325" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29818" i_stop="29769" i_length="50">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.706" a_score="0.00"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29768" g_stop="29764" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="330" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E282312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30240" e_stop="30091"/>
          <exon e_start="29993" e_stop="29819"/>
          <exon e_start="29768" e_stop="29764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAGGTATATATATCTAGGACCATTGTTTTTTGGTTGTTAGTATGTTAGAATAGATACG</genome_strand>
        <mrna_strand>ACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG..................................................ATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302237" ref_strand="+" ref_description="SGN-E302237 [cLEW-19-K6]">
      <seq>gggagagattagcctcatcccctcccctcttattagtattagtagttttttctgatttctacttaacataagcgtgattaaatttaaattcaagctaacaaagtttacatgaattgataaatgctttcgaacatgtgcactttatacggacggaaaatagtagttactaatcactaaactttgctagctacctttactacgatagcaataaagttttttcgtgtttcaatttatttgacactcttattccgaacaccttcacataaaaaacatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaatggttgtggaaaatcaacccttttaaagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30810" stop="29516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30509" g_stop="30091" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29819" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="594" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E302237" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30509" e_stop="30091"/>
          <exon e_start="29993" e_stop="29819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG</genome_strand>
        <mrna_strand>GGGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302314" ref_strand="+" ref_description="SGN-E302314 [cLEW-19-H24]">
      <seq>gggagagattagcctcatcccctcccctcttattagtattagtagttttttctgatttctacttaacataagcgtgattaaatttaaattcaagctaacaaagtttacatgaattgataaatgctttcgaacatgtgcactttatacggacggaaaatagtagttactaatcactaaactttgctagctacctttactacgatagcaataaagttttttcgtgtttcaatttatttgacactcttattccgaacaccttcacataaaaaacatcataatttactataattttctttaaaaattgttcaaaaaagaagccatagacaagcttggagtcaagttttttgttgggtaaaaatgatacaatctgtttgtgttcgagcttcagctctgccattgccacccattgattctcacagaaatgccgcaatggcaaacagttttgcaattgatgctcaaaatcttagctattcagttgtctcaaaacaaggaaaaatacttccaattcttaaagattgttcactacaagttccttctggacaattctggatgcttttgggacctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30810" stop="29546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30509" g_stop="30091" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29846" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="567" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E302314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30509" e_stop="30091"/>
          <exon e_start="29993" e_stop="29846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAAT</genome_strand>
        <mrna_strand>GGGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG.................................................................................................AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612135" ref_strand="-" ref_description="SGN-E612135 [61894]">
      <seq>ctagcttgaaatcgagtttttgttgggtaaaaatgatacagtctgtttgtgttcgagcttcagctctgcaattgccacccattaattctcacagaaatgccgcaatggctaacagttttgcaattgatgctcaaaatctcagctattcagttgtgtcaagaccaaggaaaattacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="30485" stop="29610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30185" g_stop="30091" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29993" g_stop="29910" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="179" r_length="85" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E612135" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612135" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30185" e_stop="30091"/>
          <exon e_start="29993" e_stop="29910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAGGCAATTTCTATTTCCTCACATTTGTGTTAATTTTTTTTTTTTTGGGGAAATACCCATTTTTTATTGATACCATAATTTGCTTACTATGTGTTTGTAGAAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAA-AACAAGGAAAAATACTTCC</genome_strand>
        <mrna_strand>CTAGCTTGAAATCGAGT-TTTTGTTGGGTAAAAATGATACAGTCTGTTTGTGTTCGAGCTTCAGCTCTGCAATTGCCACCCATTAATTCTCACAG.................................................................................................AAATGCCGCAATGGCTAACAGTTTTGCAATTGATGCTCAAAATCTCAGCTATTCAGTTGTGTCAAGACCAAGGAAAATTACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705856" ref_strand="+" ref_description="SGN-E705856 [FA28BD04]">
      <seq>atttcatagaagaatattattactctgtttttatacattttcttatataatacccagaaatggctaaaatgtttgcttgcttagtgttttgagccgacaatactaaatactctgtatttattttcattatataattcatatgtattgaaaaaaattcatcatcatcatcagtataaagccgtccagtactgcagaaaaatgatgaacaaaacgacgatgacaacgtcattaggataattaattttaatttttttatttttacattattagttgtcgtgtcgtctccggcttatgataacttcatcttcatccttaacaatttgtttcctttttcagttttcatacttttaagcaaacttctaaaagctgcaaaagcaaaaaaaaaaaaactcaaaaagctctgtttctaacaaagtattactctgaacattgttttgggtataaataatttggggttttttttttttttggaataagtgaaccgaaaattaaaaattttttgcccgaaaaaggaaaaaaaaaagggggttttttttaccaataaaaatgtaagggttgggagggttttttttcctttgttggggaaaaaccctttttccccctatgggaacaaataacccccggctttggttttttaccaaaaaaaaaaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="37718" stop="38902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38018" g_stop="38671" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E705856" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38018" e_stop="38671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGG-AAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTT</genome_strand>
        <mrna_strand>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAAAGTATTACTCTGAACATTGTTTTGGGTATAAATAATTTGGGGTTTTTTTTTTTTTTGGAATAAGTGAACCGAAAATTAAAAATTTTTTGCCCGAAAAAGGAAAAAAAAAAGGGGGTTTTTTTTACCAATAAAAATGTAAGGGTTGGGAG-GGTTTTTTTTCCTTTGTTGGGGAAAAACCCTTTTTCCCCCTATGGGAACAAATAACCCCCGGCTTTGGTTTTTTACCAAAAAAAAAAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747539" ref_strand="+" ref_description="SGN-E747539 [GI|7939622]">
      <seq>tttttttttttgtattagttgatcggaaaattgaagatttttggccggaaaatggaaagaagaagtgggtattgtttatcagttataatgttagtgtttggagtggttttcttgcattgtttggtgatgacgtcatttgccgctaatgtgacgtatgatcaccgggcattggttgttgacggaaggagaagagttttgatctccggttcaatacattatcctcggagtactcctgatatgtggccagaccttatacagaaatcaaaagatggaggattggatgttatagagacttatgttttctggaaccttcatgaacctgttcgaaatcagtatgattttgaaggaaggaaagatttgattaattttgtgaagttggtggagagagctggcttatttgttcatataaggattgggccttatgtttgtgcagaatggaactatggtgggtttcctctttggttgcatttcattcctggaattgaatttcgaaccgacaatgaaccgttcaaggcagaaatgaagcgattcacagctaaaattgttgacatgatcaagcaagaaaatctatatgcatcccagggtgggccggttatcttgtctcagatagaaaatgagtatggcaatggtgatattgagtctcgttatggtcctcgtgccaaaccttacgtgaactgggcagcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaggcggaactttccagaactattacatgtaccacgggggaactaactttgggagaaccagtggtggaccgtttattgcaactagctatgactatgatgctcctttagatgagtacgggcttataaatcaaccaaaatggggtcacttgaaagatctccataaagccataaagctttgtgaggctgcaatggtggcaacagaaccaaacgtcacttctctgggctctaatatagaggtcagtgtttataaaactgattcacagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaggctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaacatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggggtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatatacatcatggagaggaagaccactttggcttccctcaccgatttgatgaaattataataaaagaaaactagcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="38176" stop="45551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
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          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
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            <donor d_prob="0.996" d_score="1.00"/>
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        </intron>
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          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="333" r_length="96" r_score="1.000"/>
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        <intron i_serial="2">
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            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
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          <gDNA_exon_boundary g_start="39692" g_stop="39804" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="446" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
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            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
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          <gDNA_exon_boundary g_start="39895" g_stop="39961" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="513" r_length="67" r_score="1.000"/>
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        <intron i_serial="4">
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            <donor d_prob="0.997" d_score="1.00"/>
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        </intron>
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          <gDNA_exon_boundary g_start="40043" g_stop="40135" g_length="93"/>
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            <donor d_prob="0.948" d_score="1.00"/>
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            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
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            <donor d_prob="0.869" d_score="1.00"/>
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            <donor d_prob="0.862" d_score="1.00"/>
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        </intron>
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            <donor d_prob="0.996" d_score="0.98"/>
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            <donor d_prob="0.959" d_score="0.98"/>
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            <donor d_prob="0.996" d_score="1.00"/>
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            <donor d_prob="0.815" d_score="1.00"/>
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            <donor d_prob="0.992" d_score="1.00"/>
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        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E747539" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747539" rDNA_strand="+"/>
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        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGATGTGAGTTTCTACTTTTTTTTTCCTCAAAATTTTTTAAAAAAATGTTTTTTTTAATCTAGTGTTTGTGATAATGCAGATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAGGTAAAGCTTTGTTGTTGATCGGGATAAGGTCTGTGTACACACTGTCCTCCCTAGACACTACTTGGGATTATAGTGGATTGTTGTTGTTGTTGTAGTTGACTCTGGGGTGGAGCTAGGCGAGGCCAAGGGATTCATATGAACTCTCGTTGGGTGAAGAATTATACTGTTTATATATGATTAAAATGATGTTTTTAGGTATATGTAGTAGGTGTTGAACCTTGTTTGGCTTCTTCATAGGTTTACTTAGTCATATTTTGAACCGCTTTAGTGAAAATCTGTTCGATAATCTTCAACTCCTGACTTCGACTATGAGTGTTGTTGCAATTCTTTGCTTCAGTTATGGGCCAAGAATAGGAAAGAATGGAAATGTTCCTTCTTTTAGTGTTTCTTATGTTGAGTGTCTAGAAGTTTTGGATTGAGCAAATAAAGTAATGAGTTGTTTTCCTTTTTATAAAATTAGAAATCTTGAGCTAGACAAAAAATGAGTACGGAAAGTTCCCATTTTTACCTATGTTGCTCTGATTTTCCAAAAATGTTGTCGCACCTGGCTAGGATCCTCAGAAAATGCACAACTTTTGGAGGATCCTATTGCACCAACCGCATTTTTGAAGAATCCAACATAGATTTTTGCTGTTTCGAGTTCCAAGAACTTGATTGAACTAATAAAGTAATGAGGTTGTTTTCGTTTTAGTAAGTATCAAATCTTGAGCTAGACAAATTTGATTGAAATACTTGAGAATTCCATTTTGAGTGATGTGATGAACACGACGAAAAATGGAAGAACTGATGCGATGAAAACATTTGCAGTATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGGGTAACTAACTCTTATACTTTTTTTGCTTTTCTCAAATATTAATGTTTTTGCTTTACTGATAATTGATGGTTTTGATCTATTTTGAGACAGTGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAGGTATTCCCATTTGTGCTATTAATTAGTTTTTCCTTGGGATACTGGTTTTGGAGTTCATGACACGAGGGATTTGTGTTGCAGGCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAGGTTAGCATCTTGTAGTGATTCACTACATTCGGAGTACTAAGAAACAAGTTGATATTAGTTGCTCTTTGTTATTGTTTGAGTAGTAAAGATGCTTTGTTGACCAAACAGATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACGGTATGGTTCCTCACCCTCTTGACCAATCTTTATTTTCCTAGCTTGTTGTGGGCTTATCATTTCACTAGGTGAAAATCTCCATTGCGAAATGCAGGGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATATAGAGGTATATTTACCTTTGTCTAACACGACAACAGTTCCAATTACTTGTGAAGAAATTTTCAGTTGCTTCTTCTAAAATAGTAATGCAGTTTGACCTATGGTTCAACAAGTTTAGAATTTGTTGTGCGTGTATTGTATTGTAAGACTGCCAGTCTATCAGATCATAATTTGTTGATGCTAGCATATCTGAGTTTCACGGTGTATTCAAACATATTGCCACCCAAATGATCCTAAAAATAATTGTCTAAGCATGCCATACTACTAATGGCTTTAGAAGCCGGACTCAGCGGTAGTATAACAAACATCCTTGAACCATTCCGTCTCTTTTTCAGTTTGCCTTTTTCACCTTCTTTGTTATTTCACTTAAAAACAACACCCATAGTAAAAGAGAAGAATGAATTGTAACAGATAGCATTACTTTTGCAAGGAGAGCTTCACATTATAAGCTACAATTTCTTTTGTTCTTTCAGGTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT............................................................................ATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAGAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG..........................................................................................TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG.................................................................................GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG............................................................................................................ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG..............................................................................................GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACGTCACTTCTCTGGGCTCTAATATAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAGGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAACATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGGGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739974" ref_strand="+" ref_description="SGN-E739974 [LC19CC09]">
      <seq>cttttgatctccggttcaatacattatcctcggagtactcctgatatgtggccagaccctatacagaaatcaaaagatggaggattggatgttatagagacttatgttttctggaaccttcatgaacctgttcgaaatcagtatgattttgaaggaaggaaagatttgattaattttgtgaagttggtggagaaagctggcttatttgttcatataaggattgggccttatgtttgtgcagaatggaactatggtgggtttcctctttggttgcatttcattcctggaattgaatttcgaaccgacaatgaaccgttcaaggcagaaatgaagcgattcacagctaaaattgttgacatgatcaagcaagaaaatctatatgcatcccagggtgggccggttatcttgtctcagatagaaaatgagtatggcaatggtgatattgagtctcgttatggtcctcgtgccaaaccttacgtgaactgggcagcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggaaggtttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="38369" stop="40930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38668" g_stop="38712" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38713" i_stop="38788" i_length="76">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38789" g_stop="38884" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="141" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38885" i_stop="39691" i_length="807">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39692" g_stop="39804" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="254" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39805" i_stop="39894" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39895" g_stop="39961" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="321" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39962" i_stop="40042" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40043" g_stop="40135" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="414" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40244" g_stop="40393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="564" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40394" i_stop="40539" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40540" g_stop="40628" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="653" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109">
            <donor d_prob="0.869" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40738" g_stop="40745" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="661" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E739974" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38668" e_stop="38712"/>
          <exon e_start="38789" e_stop="38884"/>
          <exon e_start="39692" e_stop="39804"/>
          <exon e_start="39895" e_stop="39961"/>
          <exon e_start="40043" e_stop="40135"/>
          <exon e_start="40244" e_stop="40393"/>
          <exon e_start="40540" e_stop="40628"/>
          <exon e_start="40738" e_stop="40745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGATGTGAGTTTCTACTTTTTTTTTCCTCAAAATTTTTTAAAAAAATGTTTTTTTTAATCTAGTGTTTGTGATAATGCAGATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAGGTAAAGCTTTGTTGTTGATCGGGATAAGGTCTGTGTACACACTGTCCTCCCTAGACACTACTTGGGATTATAGTGGATTGTTGTTGTTGTTGTAGTTGACTCTGGGGTGGAGCTAGGCGAGGCCAAGGGATTCATATGAACTCTCGTTGGGTGAAGAATTATACTGTTTATATATGATTAAAATGATGTTTTTAGGTATATGTAGTAGGTGTTGAACCTTGTTTGGCTTCTTCATAGGTTTACTTAGTCATATTTTGAACCGCTTTAGTGAAAATCTGTTCGATAATCTTCAACTCCTGACTTCGACTATGAGTGTTGTTGCAATTCTTTGCTTCAGTTATGGGCCAAGAATAGGAAAGAATGGAAATGTTCCTTCTTTTAGTGTTTCTTATGTTGAGTGTCTAGAAGTTTTGGATTGAGCAAATAAAGTAATGAGTTGTTTTCCTTTTTATAAAATTAGAAATCTTGAGCTAGACAAAAAATGAGTACGGAAAGTTCCCATTTTTACCTATGTTGCTCTGATTTTCCAAAAATGTTGTCGCACCTGGCTAGGATCCTCAGAAAATGCACAACTTTTGGAGGATCCTATTGCACCAACCGCATTTTTGAAGAATCCAACATAGATTTTTGCTGTTTCGAGTTCCAAGAACTTGATTGAACTAATAAAGTAATGAGGTTGTTTTCGTTTTAGTAAGTATCAAATCTTGAGCTAGACAAATTTGATTGAAATACTTGAGAATTCCATTTTGAGTGATGTGATGAACACGACGAAAAATGGAAGAACTGATGCGATGAAAACATTTGCAGTATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGGGTAACTAACTCTTATACTTTTTTTGCTTTTCTCAAATATTAATGTTTTTGCTTTACTGATAATTGATGGTTTTGATCTATTTTGAGACAGTGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAGGTATTCCCATTTGTGCTATTAATTAGTTTTTCCTTGGGATACTGGTTTTGGAGTTCATGACACGAGGGATTTGTGTTGCAGGCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAGGTTAGCATCTTGTAGTGATTCACTACATTCGGAGTACTAAGAAACAAGTTGATATTAGTTGCTCTTTGTTATTGTTTGAGTAGTAAAGATGCTTTGTTGACCAAACAGATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGT</genome_strand>
        <mrna_strand>CTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT............................................................................ATGTGGCCAGACCCTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG..........................................................................................TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG.................................................................................GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG............................................................................................................ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGAAG.............................................................................................................GTTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245608" ref_strand="+" ref_description="SGN-E245608 [cLEF-43-H21]">
      <seq>cttatttgttcatataaggattgggccttatgtttgtgcagaatggaactatggtgggtttcctctttggttgcatttcattcctggaattgaatttcgaaccgacaatgaaccgttcaaggctgaaatgaagcgattcacagctaaaattgttgacatgatcaagcaagaaaatctatatgcatcccagggtgggccggttatcttgtctcagatagaaaatgagtatggcaatggtgatattgagtctcgttatggtcctcgtgccaaaccttacgtgaactgggcagcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaagcggaactttccagaaactattacatgtaccacgggggaactaactttgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="39451" stop="41265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39751" g_stop="39804" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39805" i_stop="39894" i_length="90">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39895" g_stop="39961" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="121" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39962" i_stop="40042" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40043" g_stop="40135" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="214" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40244" g_stop="40393" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="364" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40394" i_stop="40539" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40540" g_stop="40628" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="453" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40738" g_stop="40843" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="560" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96">
            <donor d_prob="0.738" d_score="0.94"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40940" g_stop="40965" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="586" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E245608" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39751" e_stop="39804"/>
          <exon e_start="39895" e_stop="39961"/>
          <exon e_start="40043" e_stop="40135"/>
          <exon e_start="40244" e_stop="40393"/>
          <exon e_start="40540" e_stop="40628"/>
          <exon e_start="40738" e_stop="40843"/>
          <exon e_start="40940" e_stop="40965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGGGTAACTAACTCTTATACTTTTTTTGCTTTTCTCAAATATTAATGTTTTTGCTTTACTGATAATTGATGGTTTTGATCTATTTTGAGACAGTGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAGGTATTCCCATTTGTGCTATTAATTAGTTTTTCCTTGGGATACTGGTTTTGGAGTTCATGACACGAGGGATTTGTGTTGCAGGCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAGGTTAGCATCTTGTAGTGATTCACTACATTCGGAGTACTAAGAAACAAGTTGATATTAGTTGCTCTTTGTTATTGTTTGAGTAGTAAAGATGCTTTGTTGACCAAACAGATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAG-AACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAG</genome_strand>
        <mrna_strand>CTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG..........................................................................................TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG.................................................................................GCTGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG............................................................................................................ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAAGCGGAACTTTCCAGAAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336421" ref_strand="+" ref_description="SGN-E336421 [cTOE-4-K9]">
      <seq>agcatcaatggctacgtctttaaatacgggagtgccatgggttatgtgtcagcaaccagatgcccctccttccgttattaacacttgcaatggattttattgtgaccaattcaagcaaaattccgataaaacacccaagatgtggactgagaattggaccggatggtttctgtcgtttggtggtcctgtcccttacagaccagtggaagacatcgctttcgctgtggctcgatttttccagcgaggcggaactttccagaactattacatgtaccacgggggaactaactttgggagaaccagtggtggaccgtttattgcaactagctatgactatgatgctcctttagatgagtacgggcttataaatcaaccaaaatggggtcacttgaaagatctccataaagccataaagctttgtgaggctgcaatggtggcaacagaaccaaacatcacttctctgggctctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="40018" stop="41536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40318" g_stop="40393" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40394" i_stop="40539" i_length="146">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.002" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40540" g_stop="40628" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="165" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40738" g_stop="40843" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="271" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96">
            <donor d_prob="0.738" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40940" g_stop="41027" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41028" i_stop="41121" i_length="94">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41122" g_stop="41236" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="474" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E336421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40318" e_stop="40393"/>
          <exon e_start="40540" e_stop="40628"/>
          <exon e_start="40738" e_stop="40843"/>
          <exon e_start="40940" e_stop="41027"/>
          <exon e_start="41122" e_stop="41236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTTGTGAGTTTCTCATATATCACCTTGTGTTTAAGTGATTGAAAAAAACACCTTGAGAACCCCTGTAGACTATCCAACTTTTCTGACAATTAATACAGATTGCCACTAAGGTAATTGTTAACTTTCTGCGTGTGCTGAGATAATGACAGATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATGGTAGGCATTTGGATTTTTAGTTCTTTAATAAACAGATCATATTTGGTGCTATTCAAAATATCCCAAGTTTCTCTTACAATTCCACCTTTTTGAATTGTTTGGAACATAGGTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACGGTATGGTTCCTCACCCTCTTGACCAATCTTTATTTTCCTAGCTTGTTGTGGGCTTATCATTTCACTAGGTGAAAATCTCCATTGCGAAATGCAGGGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</genome_strand>
        <mrna_strand>AGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT..................................................................................................................................................ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG.............................................................................................................GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG..............................................................................................GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470484" ref_strand="+" ref_description="SGN-E470484 [cSTB-18-M6]">
      <seq>attacatgtaccacgggggaactaactttggccgaactagtggtggaccgtttattgcaactagctatgactatgatgctcctttagatgagtacgggcttataagacaaccaaaatggggtcacttgaaagatctccataaagccataaagctttgtgaggctgcaatggtggcaactgaaccaaacatcacttctctgggctctactatagaggccagtgtttataaaactgattcacagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttaatactgcaaagattaattctgtatcaaccatctcaacatttgttactcagtcttcggaagttgatgcatctggcgcatccctatcaggttggacttcagttaatgagcctgtaggcatctcaagtgaaaatgcattcacaagaatggggttggtagaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="40636" stop="42631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40836" g_stop="40843" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96">
            <donor d_prob="0.738" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40940" g_stop="41027" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="96" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="41121" i_length="94">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41122" g_stop="41240" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="215" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41241" i_stop="41706" i_length="466">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41707" g_stop="41868" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="377" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41955" g_stop="42151" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="574" r_length="197" r_score="0.944"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42311" g_stop="42331" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="595" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E470484" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40836" e_stop="40843"/>
          <exon e_start="40940" e_stop="41027"/>
          <exon e_start="41122" e_stop="41240"/>
          <exon e_start="41707" e_stop="41868"/>
          <exon e_start="41955" e_stop="42151"/>
          <exon e_start="42311" e_stop="42331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATGGTACTCTATGAGTTTCTTGATTTATAGTTCCCTGCCTACAGAGACAGTTGACAGCTGAACTATGTCTTATAAATGATATTTACTGCTTCCGGACAGTACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACGGTATGGTTCCTCACCCTCTTGACCAATCTTTATTTTCCTAGCTTGTTGTGGGCTTATCATTTCACTAGGTGAAAATCTCCATTGCGAAATGCAGGGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATATAGAGGTATATTTACCTTTGTCTAACACGACAACAGTTCCAATTACTTGTGAAGAAATTTTCAGTTGCTTCTTCTAAAATAGTAATGCAGTTTGACCTATGGTTCAACAAGTTTAGAATTTGTTGTGCGTGTATTGTATTGTAAGACTGCCAGTCTATCAGATCATAATTTGTTGATGCTAGCATATCTGAGTTTCACGGTGTATTCAAACATATTGCCACCCAAATGATCCTAAAAATAATTGTCTAAGCATGCCATACTACTAATGGCTTTAGAAGCCGGACTCAGCGGTAGTATAACAAACATCCTTGAACCATTCCGTCTCTTTTTCAGTTTGCCTTTTTCACCTTCTTTGTTATTTCACTTAAAAACAACACCCATAGTAAAAGAGAAGAATGAATTGTAACAGATAGCATTACTTTTGCAAGGAGAGCTTCACATTATAAGCTACAATTTCTTTTGTTCTTTCAGGTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGA</genome_strand>
        <mrna_strand>ATTACATG................................................................................................TACCACGGGGGAACTAACTTTGGCCGAACTAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG..............................................................................................GGCTTATAAGACAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACTGAACCAAACATCACTTCTCTGGGCTCTACTATAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAATACTGCAAAG......................................................................................ATTAATTCTGTATCAACCATCTCAACATTTGTTACTCAGTCTTCGGAAGTTGATGCATCTGGCGCATCCCTATCAGGTTGGACTTCAGTTAATGAGCCTGTAGGCATCTCAAGTGAAAATGCATTCACAAGAATGGGGTTGGTAGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343951" ref_strand="+" ref_description="SGN-E343951 [cTOF-12-I19]">
      <seq>taatatagaggtcagtgtttataaaactgattcacagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggnggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactntacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41405" stop="43293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41707" g_stop="41868" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="172" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41955" g_stop="42151" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="370" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="480" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="590" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42972" g_stop="42993" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="612" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E343951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41707" e_stop="41868"/>
          <exon e_start="41955" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="42993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGG-GGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATC</genome_strand>
        <mrna_strand>GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGNGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTNTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698229" ref_strand="+" ref_description="SGN-E698229 [FA05CF07]">
      <seq>ccagtgtgctgcatttctcgccaatactgctacgcaatctgatgcggctgtgagcttcaatggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatcctaatgcaggttctaccctttggaagtcacaaactgcattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41431" stop="43611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41730" g_stop="41868" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41955" g_stop="42151" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="336" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="446" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="556" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="670" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43238" g_stop="43311" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="745" r_length="75" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E698229" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41730" e_stop="41868"/>
          <exon e_start="41955" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTAT-CTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCC</genome_strand>
        <mrna_strand>CCAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCCTAATGCAGGTTCTACCCTTTGGAAGTCACAAACTGCATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326382" ref_strand="+" ref_description="SGN-E326382 [cTOC-14-G1]">
      <seq>tggaaactcatatcatttacctccatggtccgtcagcattttacctgactgcaagaatgttgcttttagtactgcaaagattaattctgcatcaaccatctcaacatttgttactcggtcttcggtgaatgaaaatgcattcacgagaatcaggttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41490" stop="43381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41790" g_stop="41868" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41955" g_stop="42002" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="127" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42003" i_stop="42065" i_length="63">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42066" g_stop="42151" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="210" r_length="83" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="320" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="430" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42972" g_stop="43081" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="540" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E326382" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41790" e_stop="41868"/>
          <exon e_start="41955" e_stop="42002"/>
          <exon e_start="42066" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAGGTTTGGCTCATAATCTTGTCTAGTTTGAATCATAGATATGTGCTTGTTGCAGCTCAATCTAATGGTTTTACATTTCTCTGTGACAGATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</genome_strand>
        <mrna_strand>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG......................................................................................ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGTG...............................................................AATGAAAATGCATTCACGAGAAT-CAG--GTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400861" ref_strand="+" ref_description="SGN-E400861 [PPC-2-I10]">
      <seq>tctgtatcaaccatctcaacatttgttactcagtcttcggaagttgatgcatctggcgcatccctatcaggttggacttcagttaatgagcctgtaggcatctcaagtgaaaatgcattcacaagaatggggttggtagaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatggtcttcatggtttcattaatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41661" stop="42712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41961" g_stop="42151" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42412" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="293" r_length="102" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E400861" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41961" e_stop="42151"/>
          <exon e_start="42311" e_stop="42412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAA</genome_strand>
        <mrna_strand>TCTGTATCAACCATCTCAACATTTGTTACTCAGTCTTCGGAAGTTGATGCATCTGGCGCATCCCTATCAGGTTGGACTTCAGTTAATGAGCCTGTAGGCATCTCAAGTGAAAATGCATTCACAAGAATGGGGTTGGTAGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGGTCTTCATGGTTTCATTAATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267126" ref_strand="+" ref_description="SGN-E267126 [cLEI-4-F4]">
      <seq>gaagctgatgcatctggtggatccctatcaggttggacttcggtgaatgagcctgtacgcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaaacagtggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41700" stop="43381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42000" g_stop="42151" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="372" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42972" g_stop="43081" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="482" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E267126" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42000" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATA</genome_strand>
        <mrna_strand>GAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTACGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAACAGTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700125" ref_strand="+" ref_description="SGN-E700125 [FA12AH04]">
      <seq>cggtgaatgagcctgtaggcatctcaaatgaaaatgcattcacgagaatggggttgttggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttcttcatgcttatattaatggaaagctatcaggaagtggaaaaggcaacagtagacattctaactttacaattgaagttccagtcacacttgtgcctggagaaaacaaaattgacctgttgagtgcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcacccaatgacggttgtactgacccctgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41740" stop="44399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42040" g_stop="42151" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="222" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="332" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="446" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="548" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43949" g_stop="44099" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="699" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E700125" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42040" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATT</genome_strand>
        <mrna_strand>CGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCCAATGACGGTTGTACTGACCCCTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468508" ref_strand="+" ref_description="SGN-E468508 [cSTB-5-C13]">
      <seq>caagaatggggttggtggaacagataaatactacagctgataaaagcgattatctctggtactccctgagtgtcaatataaaaaatgatgagcctttccttcaagatggatctgcaacggtacttcatgtgaaaacacttggccatgttctccatgcttacattaatggaaagctatcaggaagtggaaaaggcaacagtggacattctaactttacaattgaagttccagtcacccttgtccctggagaaaacaaaatcgacctgttgagtgcgactgtgggacttcagaactaccgagcattctttgatctcaagggagcagggattactggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcgaagcagtggacatatcaggttggattgaaaggagaagaaatgggcttatctagtggaggttctacactttggaagtcacaaactgaattgcctaccaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="41782" stop="44304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42082" g_stop="42151" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42311" g_stop="42420" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="180" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="290" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.953" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="404" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="506" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43949" g_stop="44004" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="562" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E468508" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42082" e_stop="42151"/>
          <exon e_start="42311" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAGGTAAAAACAGAAAAACATTACATCTAATTGCATCAGCTCCACTTTTTATGGTTTCTAATCAGCAGCATTTTATGAGAATAAGTAGGGTTCTCCGACTGCATGCATGATCGTTATCTGCTCTGAAGTTCACTTTTCTTACATCAATTCTAATTTTTCCAGTGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAAT</genome_strand>
        <mrna_strand>CAAGAATGGGGTTGGTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG...............................................................................................................................................................TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTCCATGCTTACATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTGGACATTCTAACTTTACAATTGAAGTTCCAGTCACCCTTGTCCCTGGAGAAAACAAAATCGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTACCGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACTGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCGAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGAAATGGGCTTATCTAGTGGAGGTTCTACACTTTGGAAGTCACAAACTGAATTGCCTACCAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469714" ref_strand="+" ref_description="SGN-E469714 [cSTB-13-H8]">
      <seq>cgaggcatgtgaaaacaccttggccatgttcttcatgcctttcattaatggaaagctatcaggaagtggaaaaggcaacagtggacattctaactttacgattgaagttccagtcacccttgtgcctggagaaaacaaaatcgacctgttgagtgcgactgtgggacttcagaactacggagcattctttgatctcgaaggagcagggattaccggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcgaagcagtggacatatcaggttggattgaaaggagaagaattgggcttatctaatggaggttctacactttggaattcacaaactgaattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcattggtcgattttggcctacctatactgcaccaaataacggttgtactgacccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42066" stop="44394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42361" g_stop="42420" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277">
            <donor d_prob="0.959" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42698" g_stop="42807" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="172" r_length="110" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="286" r_length="114" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="388" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43949" g_stop="44094" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="534" r_length="146" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E469714" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42361" e_stop="42420"/>
          <exon e_start="42698" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTCATGTGAAAACAC-TTGGCCATGTTCTTCATG-CTTATATTAATGGAAAGCTATCAGGTAACGGAAATCAATGACACTTGATGACTACCTACTAGTTACCCGAAACAATGAGAAGATACTGTCTTGAGCTATTTAAGTTTACTGCAATGATTTATAGTAAGATTATTCAAGATGTCAAAGCAAAAGAAGTAGCCGAAGCATATTAAGTGGTGATATTGTATTTAGCATTTCTCTTGGTTGACGAAAGCATCAGATAATTCATCCTTGTTGGAACTATACATAGTTGTTCTTACAATGCTTAACATTTTTGCGTAAACTTTGTGATTGTTTGTAGGAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTG</genome_strand>
        <mrna_strand>CGAGGCATGTGAAAACACCTTGGCCATGTTCTTCATGCCTTTCATTAATGGAAAGCTATCAG.....................................................................................................................................................................................................................................................................................GAAGTGGAAAAGGCAACAGTGGACATTCTAACTTTACGATTGAAGTTCCAGTCACCCTTGTGCCTGGAGAAAACAAAATCGACCTGTTGAGTGCGACTGTGGGACTTCAG....................................................................................................................................................................AACTACGGAGCATTCTTTGATCTCGAAGGAGCAGGGATTACCGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCGAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGAATTGGGCTTATCTAATGGAGGTTCTACACTTTGGAATTCACAAACTGAATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATTGGTCGATTTTGGCCTACCTATACTGCACCAAATAACGGTTGTACTGACCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739827" ref_strand="+" ref_description="SGN-E739827 [LC19AB08]">
      <seq>gcgactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42664" stop="45377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42790" g_stop="42807" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="132" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="234" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="446" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="783" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44952" g_stop="45077" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="909" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E739827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42790" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATG</genome_strand>
        <mrna_strand>GCGACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740407" ref_strand="+" ref_description="SGN-E740407 [LC21BB07]">
      <seq>ccgtctgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaagggagtcgcaaaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42664" stop="45332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42790" g_stop="42807" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="132" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="234" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="446" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="783" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44952" g_stop="45032" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="864" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E740407" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42790" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGT</genome_strand>
        <mrna_strand>CCGTCTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAGGGAGTCGCAAAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739794" ref_strand="+" ref_description="SGN-E739794 [LC18DE08]">
      <seq>cctactgtgggacttcagaactatggagcattctttgatctcaagggagcagggattacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaagcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42664" stop="45316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42790" g_stop="42807" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42972" g_stop="43085" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="132" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="234" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="446" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="783" r_length="337" r_score="0.997"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44952" g_stop="45016" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="848" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E739794" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42790" e_stop="42807"/>
          <exon e_start="42972" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTGTGGGACTTCAGGTTTGAATTTTGGTTAATCCCATCATTTCATATCGAAGATTTGTTATCTGCCATATATTCTTTTGGTCCTTCAGTATTAATTTGTATCATCTATGAAGAACTTCACATTGTTATAAATTCCATTTTAGAAGCATGATCTAATGCACACCTGATATTGACTCCAGAACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAA</genome_strand>
        <mrna_strand>CCTACTGTGGGACTTCAG....................................................................................................................................................................AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAA................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701021" ref_strand="+" ref_description="SGN-E701021 [FA14DC07]">
      <seq>attacgggtccagtgcaattgaaaggtttcaaaaatggctctactactgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42708" stop="45381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43008" g_stop="43085" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="180" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="392" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="729" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44952" g_stop="45081" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="859" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E701021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43008" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACC</genome_strand>
        <mrna_strand>ATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706161" ref_strand="+" ref_description="SGN-E706161 [FA29AG05]">
      <seq>ctgatctttcatcaaagcagtggacatatcaggttggattgaaaggagaagatttgggcttatctaatggaggttctacactttggaagtcacaaactgcattgcctacaaaccaaccattaatatggtataaggcaagttttgatgctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcatcggtcgattttggcctgcctatattgcaccgaatgacggttgtactgacccctgcaattatagaggaggatacaatgctgaaaaatgtctcaaaaattgtggaaaaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="42754" stop="45449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43054" g_stop="43085" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152">
            <donor d_prob="0.815" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43238" g_stop="43339" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="134" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43949" g_stop="44160" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="346" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="683" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44952" g_stop="45149" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="881" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E706161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43054" e_stop="43085"/>
          <exon e_start="43238" e_stop="43339"/>
          <exon e_start="43949" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCTTTCATCAAAGCAGTGGACATATCAGGTTAAGTTAATAGGTCCATAGGATTTCATTCCATTTTCGATCATTCATTTCCTTCTATATTTTGGACAAAATCTCTGGTAGCATAAGGTCTTTATTCTGAAGGATAATCACATTACATTGACGTTGCCTGTCATGTGTACTTTGTTGGTCAGGTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAGGTAATATTCGTCTCAGATATGTGCAATTTAAGGATAAATGTGAACATTTTGACATTTGCTCTTTTGATATGCTCTTCCTTGAGTTGAGGGTCTACCGGAAGAAGCCTCTCTACCTCCCGAGGTAGGGGCAACGTCTACGTATACTCTACCCTCCCCAGACCCCACTTGTGAGTTTTACGCTGGGTATGTTGTTGTTGCACATCAGTTATGTAACCTTGTTTGAAGATTTTATTTGATGGAATAAATAGGCTACAAATGTTCCAGACAGATTTGCTAACAGAATCAGAATGGATTGGCCAAAGTTCCTAATGTTTACAAGTTATAATAGGCTAATGTTGATGAACTCAAATCAAAAGAACACACCATGGAGCAATATTATCAAAATGCTCGTTTCATCTGCTCGTATATTTTACTTGAAAGTAGGTTAACAATAAAAGAACTAGGGATTCTTTTCATGACAGTTGGTCTGGTATGTTAGCAATATGCCTCTTATAATGGACTGATATATCTTATTCTTTGTATGTTCATGTACCTGTATCTATCCTAAGGTAACAAATGTCCAAATCTTTTGATCAGTCGATAACTGAACTAGAACTTTTGTTCATTTAGGCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTC</genome_strand>
        <mrna_strand>CTGATCTTTCATCAAAGCAGTGGACATATCAG........................................................................................................................................................GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420452" ref_strand="+" ref_description="SGN-E420452 [STM-31-A24]">
      <seq>ctcctgctggtgatacccctctttcgatggattttactggaatggggaagggtgaggcatgggtgaatgggcaaagcattggtcgattttggcctacctatactgcaccaaataacggttgtactgacccttgcaattatagaggaggatacaacgctaactaatgggggaaaaattgtggaaaaccatcccaactgctataccatgttcctcgttcatggctgaaatccagtggaaatgtcttagtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgaggctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaagaaatcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcttcaatcaaatttgcaagctttggcactcctcaaggaacatgcggaagctttgtccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggctcaaaaagctgtagtcttggagtttcaataaatgtatttggtgagccattgtaaggagtcgcaaaagtttagctgtagaagcttcctgtatatgatgcctcgcggaactaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="43662" stop="45380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43962" g_stop="44160" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="0.82"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="536" r_length="337" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44952" g_stop="45080" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="664" r_length="128" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E420452" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43962" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAAC</genome_strand>
        <mrna_strand>CTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATTGGTCGATTTTGGCCTACCTATACTGCACCAAATAACGGTTGTACTGACCCTTGCAATTATAGAGGAGGATACAACGCTAACTAATGGGGGAAAAATTGTGGAAAACCATCCCAACTGCT......................................................................................................................ATACCATGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTAGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGAGGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAGAAATCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCTTCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGAAGCTTTGTCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGCTCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGTATTTGGTGAGCCATTGTAAGGAGTCGC-AAAAGTTTAGCTGTAGAAGCTTCCTGTATATGATGCCTCGCGGAACTAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406274" ref_strand="+" ref_description="SGN-E406274 [PPI-3-C22]">
      <seq>ctcctgctggtgatacccctctttcgatggattttacctggaatggggaagggtgaggcatgggtgaatgggccaagcattggtcgattttggcctacctatacctgcaccaaataaccggttgtacctgacccttgcaattatagaggaggatacaacgctaacaaatgtctcaaaaattgtggaaaaccatcccaactgctataccatgttcctcgttcatggctgaaatccagtggaaatgtcttagtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgaggctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaagaaatcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcttcaatcaaatttgcaagctttggcactcctcaaggaacatgcggaagctttgtccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggctcaaaaagctgtagtcttggagtttcaataaatgtatctggtgagccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="43662" stop="45354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43962" g_stop="44160" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="0.92"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="540" r_length="337" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44952" g_stop="45054" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="643" r_length="103" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E406274" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43962" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTA-CTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATA-TTGCACCGAATGA-CGGTTGTA-CTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTA</genome_strand>
        <mrna_strand>CTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACCTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCCAAGCATTGGTCGATTTTGGCCTACCTATACCTGCACCAAATAACCGGTTGTACCTGACCCTTGCAATTATAGAGGAGGATACAACGCTAACAAATGTCTCAAAAATTGTGGAAAACCATCCCAACTGCT......................................................................................................................ATACCATGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTAGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGAGGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAGAAATCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCTTCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGAAGCTTTGTCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGCTCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGTATCTGGTGAGCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551912" ref_strand="+" ref_description="SGN-E551912 [cTSB-2-D8]">
      <seq>aaccatcccagctgctataccacgttcctcgttcatggctgaaatccagtggaaatgtcttggtgttgtttgaggaaatgggcggggatcctacgaagctgtcttttgcaacaagagagatacaaagtgtatgctcaagaatatctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcaagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatatacatcatggagaggaagaccactttggcttccctcaccgatttgatgaaattataataaaagaaaactagcttcnnaaaaaaaaaaaanaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="43979" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44145" g_stop="44160" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118">
            <donor d_prob="0.880" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44279" g_stop="44615" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="353" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44952" g_stop="45252" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="654" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45253" i_stop="47884" i_length="2632">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47885" g_stop="47921" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="691" r_length="37" r_score="0.622"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47922" i_stop="48889" i_length="968">
            <donor d_prob="0.762" d_score="0.00"/>
            <acceptor a_prob="0.739" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48890" g_stop="48907" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="709" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E551912" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44145" e_stop="44160"/>
          <exon e_start="44279" e_stop="44615"/>
          <exon e_start="44952" e_stop="45252"/>
          <exon e_start="47885" e_stop="47921"/>
          <exon e_start="48890" e_stop="48907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATCCCAGCTGCTGTAAGTATTTAGGACATCTCAAGTATTTAAAAGTTTTCAGAGTATCTGGTGAAATGTTTTGGTATGTCAATCCTAGTTAAGAAATTTTGAATGTAACATTTGTATATAAACTTTGTAGATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACTTATTGCATGGAACAAGAGTTCATAGGGTTGTTATATATATGTTTAGATATTGGTGTTGGGACTTAAAGTAAGGCTTAAATCATGGGGTTTTTTTTAGCTTCATGCACATGATGAAACTACTAATGTTGCACAATTTGCAATGTGGTATGAGTTTGACCAAATGAATGGTGGATATAGATATAATTAACACAGGGTTAACATAGGCGTATTTAGGATTTAAGCTCTATGAGGTCGTGATTTCAGTAGATTTTTTCATATAAATTTATGTTACGCGTTGAAAGTAATATTAGTTCAGATGAACCCACAGCTAAATGATTGCATCCGCCCATGGTAAGTTATGGTTTTGTTTGGCATTAAATTTTCCATGTCTTATTGGAGATTCAGAAAAGTATTTGAAAACATTCATACACATAATGCGAATTGTTAATTTCTATCCCTGAATTATTGACAGCTTTAAAAATATTCATTTACTTGACTAACTGAATTTAAATACACGCCCGATTTCGCAAGATGAGTGAAATAGACCTCTAAATTCTCGTCAAGTTTAGGAGTGTTTCCAACACTTTTTTCGATTTTTTTATTAAGTGTCACATGCTCCTACAAAAATTTGAGACCACTTGCTATGTCTTGTGGAAGATCGGGGTGTGTCTAAGTTTAGCTAGTCAAGTAGAGGAGTGTTTTTAAGACTGACAATAGTTCGAGGACGAAACTAATAATTTGAGCCAAATTTAGGGGTGTTTTCAATACTTTATCTCTCTTGTAAATATATACTCTGATCTCTCCCATTCATTTTACTTGTCATATTTTTCTTCGACATGTCCCTTAAGAAAAAATTCAACTAAAAGAAAATTAACAATTACGGTAATATTCTTGATCTTTTAGAATGACAATTATTTTAATTTGGATCAGTTAGTTTTAGTAAGCACGATAACTAGAATGGATCCGAGGGAGTATTAGAGGTCAAATGTTATAGATTATAATTATTTATATATTTCAAATAGAACATTGTTTTGAATGTGAAACTTCTATTTTTCTTATGCAAGCATTCAAATAAAACTTTATTGTATAAAGGTTCTAAATTAGAGAAGAAAAATAAGTAACATACAAGAGTTCATTTGAAGACAAATCTTTGACTATGGAAACATTCTAAAAACTTGTTTATGCAATGGCCAGCACTTTGCTTAATGTACAATTGTTCAATAATACCTTTGTGCTTTTAGTGATTGTGACATTGTGATTGAGTGATAAGTATTCATTTATTTTTAATCAGAACTTTTCAGTTTGAATTTTGAGAATGAAGTTATCTGTTAGTGAATAGTTCTAGCATAGGGTTTTAAAGTTCGAAGCTTTGATAACTCGAACTCTAACACAAAATGTGATTGAGTTCGAAAAATTTCATGGAGTTATAAATGTAGTTCAAACTCTTTTTGAAATTTTTGGAGTTAAAATCGCAAAATATTCAAACTTTAGATTTTAAAATGGAGATTTTTCATGTTATAATTACTGTATTTTTGTCTAAAGTTTATTTTCACGTTAACGAACCACTAAATATAGCAAATTTGTGTATTGAATCTAAAATTCTAATCAACGACTCGAAAAGTGAAATTTGCCACCTTTCTTTCTCCTGCCTCACCGATTTAACCAGATTAATAAATTTCAAATATCAAATAATTAAACTAATAAATAAATAAAAATTATTTATTTTTAAGCCGATCACGTATTTTCTAAATGGGAAAAAAATTTAAAGTAAAAAAACAATATTGTGCTCTGATGGAAAATAAAAATTGTTAAAGTAATAATAAATAAATAATTTTCTTGAATGTCAAAAGGAAAAAAAAAAACTTAAA</genome_strand>
        <mrna_strand>AACCATCCCAGCTGCT......................................................................................................................ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCNNAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAANAAANAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283049" ref_strand="-" ref_description="SGN-E283049 [cLER-17-P3]">
      <seq>ctgatgctcatccacttcctattgatatgtgggcttcggaagacgatgcacgaaaaaagtcagggccaactctatctcttgagtgccctcatcctaatcgagtcatctcatcaatcaaatttccaagctttggcactcctcaaggaacatgcgggagctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttatgctacatatacatcatggagaggaagaccactttggctttcccacaccgttttgatgaaattataataaaagaaaactagcttcaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="44107" stop="45552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44407" g_stop="44615" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44952" g_stop="45257" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="517" r_length="308" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E283049" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283049" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44407" e_stop="44615"/>
          <exon e_start="44952" e_stop="45257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTA-GCTACATATACATCATGGAGAGGAAGACCACTTTGGC-TTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTT</genome_strand>
        <mrna_strand>CTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCGAGTCATCTCATCAATCAAATTTCCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTATGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTTCCCACACCGTTTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420453" ref_strand="-" ref_description="SGN-E420453 [STM-31-A24]">
      <seq>atcaagtcatctcttcaatcaaatttgcaagctttggcactcctcaaggaacatgcggaagctttgtccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggctcaaaaagctgtagtcttggagtttcaataaatgtatttggtgagccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcctgtatatgatgcctcgcggaactaatggaccgagaaggcacattcctaagtgtaaaagtggtagaaggtcagataaactattactaagttacagcttcagaaagatagtgtttagctacttgtacgtctcggagaggaagaacactttggcttccctcaccaatttgatgagattataataaaagaaaaaaatcttcaatctttccaaaaaaagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="44203" stop="45556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44503" g_stop="44615" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44952" g_stop="45249" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="410" r_length="297" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E420453" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420453" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44503" e_stop="44615"/>
          <exon e_start="44952" e_stop="45249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCA</genome_strand>
        <mrna_strand>ATCAAGTCATCTCTTCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGAAGCTTTGTCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGCTCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGTATTTGGTGAGCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCCTGTATATGATGCCTCGCGGAACTAATGGACCGAGAAGGCACATTCC-TAAGTGTAAAAGTGGTAGAAGGTCAGATAAACTATTACTAAGTTACAGCTTCAGAAAGATAGTGTTTAGCTACTTGTACGTCTCGGAGAGGAAGAACACTTTGGCTTCCCTCACCAATTTGATGAGATTATAATAAAAGAAAAAAATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218144" ref_strand="+" ref_description="SGN-E218144 [cLEL-23-F21](-)">
      <seq>caagtcatctcatcaatcaaatttgcaagctttggcactcctcaaggaacatgcgggagctttatccatggtcggtgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaaactaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccatttctaagttacagcttcaggaagatagtgcttagctacatagacatcatggggaggaagaccactttggcttccctcaccgatttgatgtaattataataaaagaagtctagcttccataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="44205" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44505" g_stop="44615" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44952" g_stop="45252" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="412" r_length="301" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45253" i_stop="47044" i_length="1792">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47045" g_stop="47060" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="428" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E218144" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44505" e_stop="44615"/>
          <exon e_start="44952" e_stop="45252"/>
          <exon e_start="47045" e_stop="47060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACT</genome_strand>
        <mrna_strand>CAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGGTGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTTCTAAGTTACAGCTTCAGGAAGATAGTGCTTAGCTACATAGACATCATGGGGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGTAATTATAATAAAAGAAGTCTAGCTTCCATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217924" ref_strand="+" ref_description="SGN-E217924 [cLEL-23-F21](-)">
      <seq>gctttatccatggtcgatgcagtagcagcaatgctctttcaattgtaaagaaggcttgcattggatcaaaaagctgtagtcttggagtttcaataaatgcatttggtgatccatgtaaaggagtcgcaaaaagtttagctgtagaagcttcttgtacatgatgcctcacgaacctaatgaaccgagaaggcacgttccttaagtgttaaagtagtataaggtcagataaaccattactaagttacagcttcagaaagatagtgcttagctacatagacatcatggagaggaagaccactttggcttcccgcaccgatttgatgaaattataataaaagaagactagcttcaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="44263" stop="107347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44563" g_stop="44615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44952" g_stop="45252" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="354" r_length="301" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45253" i_stop="47044" i_length="1792">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47045" g_stop="47060" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="370" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E217924" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44563" e_stop="44615"/>
          <exon e_start="44952" e_stop="45252"/>
          <exon e_start="47045" e_stop="47060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAGGTTAGATCCATTTTATTTGATCTTAAGTATCCTAGTTTTTTGAGTTTCATGCCTGTATTATCAGGTGTGTGAGTTTTAAACTAAACTATCACCAAATATTTATCGAAACACACCTCAACTATTAGTTGTTCTCTTTTCCTACCTGAACGGTGGTGATAGTCCAGGTAGGAAAAGGGGGCAACTGATAGTTGAAGTGTGTTTTGAGAAATAGTTGATGATCATTCAAGTAGGAAAAGTGAACATCTAATAGTCCGAGTGGGAAACTCAAAATAACTGGGATACTTTAAGTGTGTTTTTGACCTGTCACTCTATAAAAGAATTCAACCATCTTTGCAGGCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTTGCTTTGCTCTCCAACTTGATGAGATTATAGTTTAGAAAAAAGTTGCCTCATGGATGTTTTAATCAAGCAGAGTATAAGTCACATTAATAGATTGATGTATCATAGTAAACTCGAAAATTTCTTCGTAATTTTCGCATCCTTTATTCACATATTTAGTAACACATCCAAATACAATCAGATAAATAGCAATATTTTAGTCAATACACAATACACTTATTGGTTAATATCTTTATCAAGATTATCAAGCTGAGGCCACACTTGAGGGTCTTTGGAACCTGCAATTCTTGCAGATAGCTGAATGGAGTGATGGTGTCTGATACTTGTCTTCTCCGCCCATGATTGGCATCGGCACCCCTCTCTTGACTGGACTAACATATCCCGGCTGGTAAGTCTTGCCAAGAATTCCTTCGACGTCTTTAGATAGATTGAAAAACTTAAATTGTGTCTCTAAGTGAGCAAAAGCATCATCTGCTGGTAGCTGATAGTTGTGAACCTTGTTTTCTTTTTCTCCAATGGGGACTACCTTCACATCTAATTGCAACAGTCCAGAAACTGTGACCCTCACGCTGTTAAGATCATCTGTCCTTTCGACCACGACTGATCTCTCAGCAGTGTTAACACTCCATTCTACATCTCCATCTGTTGGGACATTAACTGTCTCACCATTCCACTGTACAATAAGAGCATCAACCTTATCATCCCAATGTGACACTTCCGTTGCTCCTACGACTAATGTATGGGTGTCAAACATGACTGACAATGTTTGCACCCATGTATAGTCGCGCTTCCTTCCCTGTGGTCGTGTCCCTATTAGATGTGCATTAATGTGGAGGTTGTCATCTGAAACAATGGCAAAGTCGGTTTCCTTTGCTCCGTGGAAGTAGAACATCACCCCGTCACCACCCACAAATCTTGGATCGTAGCATAGAGCACCATAACCATCACACCTAGGTAGTCTCCCTGTCAAAGAAGTGAAACAACAAAACTTTGAGTTCATTTAGAGAGTCGTCAAGAAAACAGTGTCATTTGACAGTATCAAGTTTTTCCTACAGTATACTCGAGTTGTTTCATACGTTCATTTAGACAGACTTTACACTCCGTGCATTGACGGTGTAAAAATGGTGACTAACTTGCTACCACACCGTTAAAATGCATAGATAGGCTATGTTGCTCAAACTCTTCAAAAGGTTATAGGTGCATGTCGGAGCACTATTTTTTGAAGATCCGACAGGTGTGGTGCGGTAGTGTGATGCTTGAGAAGCCTACTTGTATTACACTAGTATCTCTTGCAAAACTAGAAGATATGTAATACTCCCTCCTTTTCAGTTTGTTTTGACTTGGCACGGAGTTTAAGAAAGCAAAAAAGACTTAGATTTTGTGGTCTAAAACTACAGAGAGTGAGTATATAATGCTTACACTTGCAAGTTGCTTCACACTTGCTGCTGCAATCAATATAGCATCCCTTCTGCTTCTTGTTCTGTTTAGGCTTCCTTTGAGGACACTCTGTTGGACAGGTAAGAGTTCTGTAGTAACAAACTCCCTGAACGGTGCAGAACGCACGTTCTTGCCCCGTACCTGGTAATGGATCCAACACATTATAACCGGGATCCGTAGCAACTGCATTCACCTCCTTACCTTTGCCTTCTGGTTGATCAGCAATGGTTACTTGTGAAAAGATGGATAAGAGGAGCAGAGCTGCTATTAAGCACAAGTTTCTCTTATCCATCTCTACTATGACTGTTGTTGATATATTTTTTCTGTTTTTTGTTTGTTTGTTTGCTATTTAGACAGAAAATAAACACT</genome_strand>
        <mrna_strand>GCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG................................................................................................................................................................................................................................................................................................................................................GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAACCTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATAGACATCATGGAGAGGAAGACCACTTTGGCTTCCCGCACCGATTTGATGAAATTATAATAAAAGAAGACTAGCTTCAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575983" ref_strand="+" ref_description="SGN-E575983 [35691]">
      <seq>aacaaacaaaaaaaacagaaaaaatatcaactacagtcatagtagagatggataagagaaacttgtgcctaatagtgactctgctactcttatccatcttttcacaagtaaccattgctgatcaaccagaaggcaaaggtaaggaggtgaatgcagttgctccgaatcccggttatgttgcattggatccattgccaggtacggggcaagaacgtgcgttctgcaccgttcagggagtttgttactacagaactcttacctgtccaacagagtgtcctcaaaggaagcctaaacagaacaaaaagcagaagggatgctatattgattgcagcagcaaatgtgaagcaacttgcaagtggagactacctaggtgtgatggttatggtgctctatgctacgatccgagatttgtgggtggtgacggggtgatgttctacttccatggagcaaaggaaaccgattttgccattgtttcagatgacaacctccacattaatgcacatctaattgggacacgaccacagggaaggaagcgcgactatacatgggttcaaacattgtcagtcatgtttgacacccatacattagtcgtaggagcaacggaagtgtcacattgggatgataaggttgatgctcttattgtacagtggaacggtgagacagttaatgtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="47334" stop="45600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47030" g_stop="46674" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46673" i_stop="46218" i_length="456">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46217" g_stop="45900" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="675" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E575983" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47030" e_stop="46674"/>
          <exon e_start="46217" e_stop="45900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAAAACAGAAAAAATATATCAACAACAGTCATAGTAGAGATGGATAAGAGAAACTTGTGCTTAATAGCAGCTCTGCTCCTCTTATCCATCTTTTCACAAGTAACCATTGCTGATCAACCAGAAGGCAAAGGTAAGGAGGTGAATGCAGTTGCTACGGATCCCGGTTATAATGTGTTGGATCCATTACCAGGTACGGGGCAAGAACGTGCGTTCTGCACCGTTCAGGGAGTTTGTTACTACAGAACTCTTACCTGTCCAACAGAGTGTCCTCAAAGGAAGCCTAAACAGAACAAGAAGCAGAAGGGATGCTATATTGATTGCAGCAGCAAGTGTGAAGCAACTTGCAAGTGTAAGCATTATATACTCACTCTCTGTAGTTTTAGACCACAAAATCTAAGTCTTTTTTGCTTTCTTAAACTCCGTGCCAAGTCAAAACAAACTGAAAAGGAGGGAGTATTACATATCTTCTAGTTTTGCAAGAGATACTAGTGTAATACAAGTAGGCTTCTCAAGCATCACACTACCGCACCACACCTGTCGGATCTTCAAAAAATAGTGCTCCGACATGCACCTATAACCTTTTGAAGAGTTTGAGCAACATAGCCTATCTATGCATTTTAACGGTGTGGTAGCAAGTTAGTCACCATTTTTACACCGTCAATGCACGGAGTGTAAAGTCTGTCTAAATGAACGTATGAAACAACTCGAGTATACTGTAGGAAAAACTTGATACTGTCAAATGACACTGTTTTCTTGACGACTCTCTAAATGAACTCAAAGTTTTGTTGTTTCACTTCTTTGACAGGGAGACTACCTAGGTGTGATGGTTATGGTGCTCTATGCTACGATCCAAGATTTGTGGGTGGTGACGGGGTGATGTTCTACTTCCACGGAGCAAAGGAAACCGACTTTGCCATTGTTTCAGATGACAACCTCCACATTAATGCACATCTAATAGGGACACGACCACAGGGAAGGAAGCGCGACTATACATGGGTGCAAACATTGTCAGTCATGTTTGACACCCATACATTAGTCGTAGGAGCAACGGAAGTGTCACATTGGGATGATAAGGTTGATGCTCTTATTGTACAGTGGAATGGTGAGACAGTTAATGTCCCAA</genome_strand>
        <mrna_strand>AACAAACAAAAAAAACAGAAAAAATATCAACTACAGTCATAGTAGAGATGGATAAGAGAAACTTGTGCCTAATAGTGACTCTGCTACTCTTATCCATCTTTTCACAAGTAACCATTGCTGATCAACCAGAAGGCAAAGGTAAGGAGGTGAATGCAGTTGCTCCGAATCCCGGTTATGTTGCATTGGATCCATTGCCAGGTACGGGGCAAGAACGTGCGTTCTGCACCGTTCAGGGAGTTTGTTACTACAGAACTCTTACCTGTCCAACAGAGTGTCCTCAAAGGAAGCCTAAACAGAACAAAAAGCAGAAGGGATGCTATATTGATTGCAGCAGCAAATGTGAAGCAACTTGCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACTACCTAGGTGTGATGGTTATGGTGCTCTATGCTACGATCCGAGATTTGTGGGTGGTGACGGGGTGATGTTCTACTTCCATGGAGCAAAGGAAACCGATTTTGCCATTGTTTCAGATGACAACCTCCACATTAATGCACATCTAATTGGGACACGACCACAGGGAAGGAAGCGCGACTATACATGGGTTCAAACATTGTCAGTCATGTTTGACACCCATACATTAGTCGTAGGAGCAACGGAAGTGTCACATTGGGATGATAAGGTTGATGCTCTTATTGTACAGTGGAACGGTGAGACAGTTAATGTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372757" ref_strand="+" ref_description="SGN-E372757 [TUS-32-J4](-)">
      <seq>tcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctttatcagccatagaaacttttaattccaatcctgctattcaaaaggaaaaggaatctaccgagtttggaaaaaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcccagttattttttgaaaatggggcctgaaatcgaaggaggaacttttgatattgggtcaacatccccctcaaatcaaagcttcggaacgggttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaaaaaatgcagatcatgttaaaaggtcaaatgggtactcattgacattgttatgtttttatttttgttaattttcatttgcttatcatacattttaaatggggttcatgttaaaacatgaaatgttgaatgccattcattgttgtacataatattaaaggattttttttccccctcctcatccccaaatacaataataattacgtttcattccccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="52237" stop="50066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51937" g_stop="51775" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="261" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50729" g_stop="50372" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="619" r_length="358" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="656"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E372757" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51937" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</genome_strand>
        <mrna_strand>TCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTTTATCAGCCATAGAAACTTTTAATTCCAATCCTGCTATTCAAAAGGAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTTTGGAAAAAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCCCAGTTATTTTTTGAAAATGGGGCCTGAAATCGAAGGAGGAACTTTTGATATTGGGTCAACATCCCCCTCAAATCAAAGCTTCGGAACGGGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAAAAATGCAGATCATGTTAAAAGGTCAAATGGGTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTTTAAATGGGGTTCATGTTAAAACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTTTTTCCCCCTCCTCATCCCCAAATACAATAATAATTACGTTTCATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574633" ref_strand="-" ref_description="SGN-E574633 [34130]">
      <seq>tccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaagaaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggagcgcgttcaactgttgattttcccatataccaatagcaggaaaaaaaattgcttgaaagaaatgcagatcatattaaaaggtcaaatggctactcattgacattgttatgtttttatttttgctaattttcatttgcttatcatacattctaaatgttgttcatgctaaacatgaagtgttgaatgccattcattgttgtacataatagtaaagtattttctctcaaaaatacaaaagaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="52207" stop="50113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51907" g_stop="51775" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="231" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50729" g_stop="50415" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="545" r_length="314" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="553" polyA_stop="579"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E574633" ref_strand="-">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51907" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</genome_strand>
        <mrna_strand>TCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGAAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAGCGCGTTCAACTGTTGATTTTCCCATATACCAATAGCAGGAAAAAAAATTGCTTGAAAGAAATGCAGATCATATTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGCTAATTTTCATTTGCTTATCATACATTCTAAATGTTGTTCATGCTAA-ACATGAAGTGTTGAATGCCATTCATTGTTGTACATAATAGTAAAGTATTTTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420216" ref_strand="-" ref_description="SGN-E420216 [STM-30-L10]">
      <seq>aagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaagaaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggagcacgttcaattattgattttcccatataccaatagcagaaaaaaaattgcttgaaagaaatgcagatcatattaaaaggtcaaatggctactcattgacattgttatgctcattgacattgttatgtttttatttttgctaattttcatttgcttatcatacattctaaatgttgttcatgctaaacatgaaatgttgaatgccattcattgttgtacataatagtaaagaattttctctcaaaaaaaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="52204" stop="50113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51904" g_stop="51775" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="228" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50729" g_stop="50415" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="559" r_length="331" r_score="0.848"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="575"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E420216" ref_strand="-">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420216" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51904" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAAT-G---------G-C-----TA--CTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</genome_strand>
        <mrna_strand>AAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGAAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAGCACGTTCAATTATTGATTTTCCCATATACCAATAGCAG-AAAAAAAATTGCTTGAAAGAAATGCAGATCATATTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGCTCATTGACATTGTTATGTTTTTATTTTTGCTAATTTTCATTTGCTTATCATACATTCTAAATGTTGTTCATGCTAA-ACATGAAATGTTGAATGCCATTCATTGTTGTACATAATAGTAAAGAATTTTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213578" ref_strand="-" ref_description="SGN-E213578 [cLEC-71-L6]">
      <seq>aaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttttgatattgtgtcaacatccacctcaaatcaaagtttcggaacgcgttcaattattgattttcccatatcccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttttatttttgttaattttcatttgcttatcatacattctaaatggtgttcatgctaagacatgaaatgttgaatgccattcattgttgtacataatattaaaggattttctctcaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="51385" stop="50113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51085" g_stop="51005" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50729" g_stop="50415" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="396" r_length="315" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="423"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E213578" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51085" e_stop="51005"/>
          <exon e_start="50729" e_stop="50415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</genome_strand>
        <mrna_strand>AAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTTTGATATTGTGTCAACATCCACCTCAAATCAAAGTTTCGGAACGCGTTCAATTATTGATTTTCCCATATCCCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611185" ref_strand="+" ref_description="SGN-E611185 [60933]">
      <seq>agtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaagaaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggagcgcgttcaactgttgattttcccatataccaatagcaggaaaaaaaattgcttgaaagaaatgcagatcatattaaaaggtcaaatggctactcattgacattgttatgtttttatttttgctaattttcatttgcttatcatacattctaaatgttgttcatgctaaacatgaagtgttgaatgccattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="52144" stop="50147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51844" g_stop="51775" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="168" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50729" g_stop="50447" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="450" r_length="282" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E611185" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51844" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCAT</genome_strand>
        <mrna_strand>AGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGAAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAGCGCGTTCAACTGTTGATTTTCCCATATACCAATAGCAGGAAAAAAAATTGCTTGAAAGAAATGCAGATCATATTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGCTAATTTTCATTTGCTTATCATACATTCTAAATGTTGTTCATGCTAA-ACATGAAGTGTTGAATGCCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317014" ref_strand="-" ref_description="SGN-E317014 [cTOA-27-G9]">
      <seq>aatgggaagcccagtatgggggacatgtgcaggtctcattttcttggcaaataaggccactgggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggaacgcgttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="54921" stop="50228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54621" g_stop="54560" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="136" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="328" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50729" g_stop="50528" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="628" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E317014" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317014" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54621" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</genome_strand>
        <mrna_strand>AATGGGAAGCCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316019" ref_strand="-" ref_description="SGN-E316019 [cTOA-23-C8]">
      <seq>gggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgcagatactcgatggcacagttatttcttgaagatggtgcctgaaatcgaaggaggaacttctgatattgtgtcaacatccacctcaaatcaaagcttcggaacgcgttcaattattgattttcccatataccagtagcagaaaaaaaaattgcttcaaagaaatgcagatcatgttaaaaggtcaaatggctactcattgacattgttatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="52804" stop="50228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52504" g_stop="52430" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="267" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51102" g_stop="51005" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="365" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50729" g_stop="50528" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="567" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E316019" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316019" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52504" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51005"/>
          <exon e_start="50729" e_stop="50528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATGGTATGTTTCTTCTGCGACTAGTATGAATGTTATCTACTACCTCAGTGGCACTATGTACTACTATTATAACTTCACTTTGTTACGGCCCCTTGATATGGATCTAGTTATGGGACACTGCCAAATGAAATAACGTGTTTTCTTCCTACGACCTATGGTGCTAGTTCGTTAAGAAACAACCCATTTTTAGTACATAGTCTAAATCTCCCTGCCTCGAAAAGGTTGATAGCCTGTTTCCTATAGACCCTCGGCTCAAGTAACATCACTTTGTTTTACAGGCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</genome_strand>
        <mrna_strand>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG...................................................................................................................................................................................................................................................................................GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372758" ref_strand="+" ref_description="SGN-E372758 [TUS-32-J4]">
      <seq>gcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttcttggcaaataaggccactgggcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagtcgtagctgaagatggtggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattgtcagacattcctctatcagccatagaaactcttaattccaatcctgctattcaaaaggaagaggaatctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56529" stop="50717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56229" g_stop="56098" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="260" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54560" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="348" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="422" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="614" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51102" g_stop="51017" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="700" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E372758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56229" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGC</genome_strand>
        <mrna_strand>GCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420215" ref_strand="+" ref_description="SGN-E420215 [STM-30-L10]">
      <seq>gattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacatagcagttttgaaaagattaggagtgaaaggtgtggaggtgagaaagccagagcagttgctgcatgttagctccctaatcatccctggtggagagagcaccaccatggccaagttggctgagctccacaatttgttccctgctctgcgtgagtttgtacaaatggggaagccagtttgggggacctgtgcagggctcattttcttggcaaatagagccactgggcagaaaactggaggacagaaactaattggaggccttgattgtactgtacaccgaaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagttgtagctgaagaaggcggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttactagctactgcttttcatcccgaattaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56483" stop="50719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56184" g_stop="56098" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="215" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54560" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="303" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="377" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="569" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51102" g_stop="51019" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="653" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E420215" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56184" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACT</genome_strand>
        <mrna_strand>GATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATAGCAG..................................................................................TTTTGAAAAGATTAGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGCATGTTAGCTCCCTAATCATCCCTGGTGGAGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTCTGCGTGAGTTTGTACAAATGGGGAAGCCAGTTTGGGGGACCTGTGCAGGGCTCATTTTCTTGGCAAATAGAGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACTGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGAAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTTGTAGCTGAAGAAGGCGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405878" ref_strand="+" ref_description="SGN-E405878 [PPI-1-L10]">
      <seq>gattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacatagcagttttgaaaagattaggagtgaaaggtgtggaggtgagaaagccagagcagttgctgcatgttagctccctaatcatccctggtggagagagcaccaccatggccaagttggctgagctccacaatttgttccctgctctgcgtgagtttgtacaaatggggaagccagtttgggggacctgtgcagggctcattttcttggcaaatagagccactgggcagaaaactggaggacagaaactaattggaggccttgattgtactgtacaccgaaacttttttggaagccagattcaaagctttgagacagaacttcctattcctcaagttgtagctgaagaaggcggtcctccaagttttcgtgctgttttcatccgtgctccggcaatccttgatgtaggaccagacgttgaagtattggcagacattcctctatcagccatagaaactattaattccaatcctgctattccgaaggaagaggattctaccgagtctggaaagaaagtaattgttgctgtaaagcaagggaacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56483" stop="50747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56184" g_stop="56098" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="215" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54560" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="303" r_length="88" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="377" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51966" g_stop="51775" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="569" r_length="192" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51102" g_stop="51047" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="625" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E405878" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56184" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
          <exon e_start="51966" e_stop="51775"/>
          <exon e_start="51102" e_stop="51047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAGGTAAACAAGTGGTTCTTTTCCAACATCTTAATAGATCAGCAAGAAAGGAAGGAATTCATTTACATAGATAAGCAAACACCCGTACTATGTTTATTAGTTATTAGGGAGTCGGGCAACATTGCCTTTATCAAAAAAAGAAAAAGAAGAGAGGGTGGCAGGGGTGAGTGAGGCATGCTTATGGGTTTTGTTTTCAAGTTAAAGACATTTTGCTACATAAGGTTCCTGTACCTCAATAAATAGCATGCAACCGAAGTAGTTAACGACTTAAAGGTCTATCTATAACTAAGAGCTCTTGCAAACACCATAAGAGAGATAACCACACACATTTTCTATATGATGACGGAGTTGTGGTTGTTATAGCAAACTTGTGAAGAAGTGCTCAATTTTGATGAATGAGTTGGAGTTGTTTTGTGTTATTAACCACAGTATGCTAATGTAGCTTTTTAATTATCAAATTGAACAGATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAGGTTTACTTTGTCCTTCTGTCCATCTAGTGTCCTAACTGCAATATAGATGTGCCTTGTAAAAAATAAAGGCATAACACATAAACAAACACTCAAACTTGGCCTCATCTGGCAGGCAACTAAGCACTCCAACTTTAAGTATGCACACCTAGACACCTAAATGTGGTCTCAACTGACAACTAAATGCTCCAACTCGTCTCCACTGTGTCTTGTGGACATATGACGTTGATGCGTCACATAATTTTGGAGGTGTCTAAATGATCATTTGTATGTCGGAGTGTTCACCTGACACAGTGGAGACGAGTTGAGGTGTCTAGATGTGCATACTCAAAGTTAGAGTGCTTGCTTACCAACTGAGATCAAGTTTGAATGTAATGTTTATATATTATGCTTTTCCTAAAAGTTGGTGCATGTGTAAAGAATTTTTGTTTTCTAACACGTCTACATGTGTCAAAAGATTACACTAGCGAGTAAGACTTGATGGCCTGTTTTGCGATTGGAAAACAATGAATGTGATAACACACTAGTACACTACAAGTTAGTTTACAGACTCTAATTAAACCAAGTCTAACTCTTCGTAAAGGAGGAATATTGTCATAATGCTACTTAATTTTTTGCTTTCCTATCGGTTTAGAATATCAGCTCAGTGTGATATGATATCTTTTGATGCTTCAGGAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACT</genome_strand>
        <mrna_strand>GATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATAGCAG..................................................................................TTTTGAAAAGATTAGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGCATGTTAGCTCCCTAATCATCCCTGGTGGAGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTCTGCGTGAGTTTGTACAAATGGGGAAGCCAGTTTGGGGGACCTGTGCAGGGCTCATTTTCTTGGCAAATAGAGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAAACTGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGAAACTTTTTTGGAAGCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTTGTAGCTGAAGAAGGCGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGGCAGACATTCCTCTATCAGCCATAGAAACTATTAATTCCAATCCTGCTATTCCGAAGGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725545" ref_strand="+" ref_description="SGN-E725545 [LA04AA05]">
      <seq>acgcaggtggccgcctcttagccgccaacagatattatcagtgaagcaaaagcaaaacactcaccaaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttcttggcaataaggccactgtgcagaaaaccggaggacagaaactaattggaggccttgattgtactgtacaccgtaacttttttggaagccagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56633" stop="52128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56333" g_stop="56098" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="364" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54560" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="451" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52503" g_stop="52430" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="525" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E725545" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56333" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54560"/>
          <exon e_start="52503" e_stop="52430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTGGTGAGTGTCCAACTCCATATCTTACTATAAGTGTAGGATACACTTTGCAGAGTCCTTGCTGCTTATCTTATTAGTCATCTTATAAAGCAAGATTTTGGGGTCGTTTTTCCAAGAAAAAACTAATTCATGGTCGATATTATAGCCAATTTGGGTGTTTGCAGGTTTGAAATTGGTATGTATTTTGACTATTTTCTATAAACCATAGGAAGGGGAGCCTTGGCATAACTGGTAAAGTTATTGTCATGTGACCAGGAGGTCACGTGTTCAAGCCGTGGAAACAAACCTCTCGAGAAATGCAGGGTAAGGCGCATATAATAGGCCGTTATGGTCCGGTCCTTCCACGGATCCGCGCATAGTGGGAGCTTTAGTGCACCGGGCTGCTGGGCCCGTTCTGTAAACCATTGGAATTGCACGCTATGATTAAACAGAGCTTGAGTCAAGGATACTTTTCTCTTCTTAAAAGATCCACATCCACTTCTGTTCTTTGTTTTAATATCACATGAGAGCCATTTGATCTGGCTAACTCTACTTGATCAACAGCCTTTTAGTCGCCAACCGTCTGGCTTTTTATGGAGAAACAAATAATGTCATAATATAATCTTCCTAATTGACTACGAGATTGAATTTAAGAATTTATATGTAAAAATGTTAACTTTATTAGATTTATCTATAGTTGATAATAGTATATATCTTTGTTTAAAGATGAATTCTGAATATATCAAACGACAAAAGACTCATGTCACTCTTTAGTGTAGTATGATACAACTTATGCTTGTAGTACTGGAGATTATTCTAATCTCTTCTCTGGTTGCATTTGAGGGTCTATGTTGGTTACATATTCTTATATAAGAGCGCATATACTTGTCACGAGTTCTGAGACGATATATTACTATGTATATCTGTTATTGCTAGACTTTCTAGGGTAAGTAGTTGATTTTGTTCCCCGCTTCCTTTGCTCCACGCGCACCAATCGAGAATTCGAGATAGAAAGATAGATTGATTGGTGGGCCATTAAGCCTCATATCACTTTAAGGCAGATAATGGAAAGGTGAGCCAATGTAGCATGCTTGTTTACTCATCTGCTATAACTACGGGATCAATGAAATATACTCAATAGAGAACAACATTTGTGAACTTTTATATTTCATTTTGTCATGTCAAACTATCAGATTGAGCTTTTACTTGTAATCATTTTGTCATGTCAAACTTTCACATTAAGCTTTTACTTGTAACGGTAAAGCATTGCCACATCAACTGATGTCAATAACATTAGGCAATTAATCTAAAGGCACCTATTGAATCTCACAAATTTTGAGAAGTTGTTGTCTCACCTTGGAGGTTGTCTAGGACACAGATTAGGTACTAGGTTAGTAGGTAGTAGAGTGTTGTATTGCTTATCCTTCCATACTAGTAGTATTCGTATTCACCTGTAGATTCTTCTAGATTCTTGTCCTTTGCTTTCTGTTACTATCTATTGTCTCTTATCAGTATTCGCTCTGTGGTTTCTCATCCTTCGATTTGTTTAGGACACAAATTAGTGCACTAGTTTGTTGTAGTTATTGTACCTTCTTTCAGAATGCTTCGTCATGCTTCCTTAGTACTTTGCCATGATCTCTTCATTTCCACTTTTTCTTTTCTTGATATGCTTTCCCTTAGCCAAGGGTCTACTAGAAACACTCTCTACCTCCCAAGGTAGGGTTGAAGTTTGTGTTCACTGTACCCTCCCCAGACCCCACTCGTGGGATTACACTGGTTATCTTCTTGTTGTTATATTAGTTTTGCTACATCTACTGATCTCAACAACATTAGGCAATTAATCTGTCGACACCTATGATTTCACAAATTTTGAGAATTTGTTGTTTCTCCTTTTTCTCGGGGTTATTAATTTTGCTTTACTGTTCTAGTTACTTGTAGAGCACCCTCTCCACTTATCCAGAATAATATAAAGCTCACTTTGTCTGGACTAGTAATCACAAGCTCTTTTTGATGAACCTTCTTACTATTTTTACCATATTGAGGCGAGAAATTACACACATTTTGTGGCTTCTCTTCTCAGGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG</genome_strand>
        <mrna_strand>ACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGC-AATAAGGCCACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245551" ref_strand="+" ref_description="SGN-E245551 [cLEF-43-N8]">
      <seq>gatcctttttttttcgattttcaaggaagtgtgacgcaggtggccgcctgttagccgccaacagatattatcagtgaagcaaaagcaaaacactcaccaaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagccagtatgggggacatgtgcaggtctcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56666" stop="54279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56366" g_stop="56098" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="397" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54579" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="466" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E245551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56366" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</genome_strand>
        <mrna_strand>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTGTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294032" ref_strand="+" ref_description="SGN-E294032 [cLET-13-A3]">
      <seq>gcgcaattgctgtttcaagattgagttttttttagtacccttttgttaattttcattgcttcttgattttgcaacttgaaaaatggatgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcatttgctgaatgttagctccctaatcatccctggaggggagagcaccaccatggccaaggtggctgagctccacaatctgttccctgctttgcgtgagtttgctcaaaagaagaagccagtataggggacatgtgcaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56530" stop="54287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56231" g_stop="56098" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="262" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54587" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="323" r_length="61" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E294032" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56231" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTC</genome_strand>
        <mrna_strand>GCGCAATTGCTGTTTCAAGATTGAGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGCTTCTTGATTTTGCAACTTGAAAAATGGATGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCATTTGCTGAATGTTAGCTCCCTAATCATCCCTGGAGGGGAGAGCACCACCATGGCCAAGGTGGCTGAGCTCCACAATCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGCTCAAAAGAAGAAGCCAGTATAGGGGACATGTGCAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283934" ref_strand="+" ref_description="SGN-E283934 [cLER-13-D7]">
      <seq>aaattcacccttttttccatacccttaaactccttagccgcaattgctgtttcaagattgtgttttttttagtacccttttgttaattttcattgtttcttgattttgcaacttgaaaaatggttgtgggtgttcttgctttacagggatctttcaatgaacacattgcagttttgaaaagattgggagtgaaaggtgtggaggtgagaaagccagagcagttgctgaatgttagctccctaatcatccctggtggggagagcaccaccatggccaagttggctgagctccacaatttgttccctgctttgcgtgagtttgttcaaatggggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="56568" stop="54311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56268" g_stop="56098" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56015" g_stop="55888" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="299" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54647" g_stop="54611" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="336" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E283934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56268" e_stop="56098"/>
          <exon e_start="56015" e_stop="55888"/>
          <exon e_start="54647" e_stop="54611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAGGTACCCTTTTTGTGCTTTTGATTGTGTAGATTTTTTTTGTGTTTGTTTTGGTTTTTTTCTTATGTGTTTTGGATTTTGATAGTTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTGGTAACTCTCTTATGGTCGTTTGGTTGGGTGTATAAGAACAATACTGAATATGATGTATTACTAATGCATGCTGAGATTATCTCTTATCCATGGTTTGGTTTGGTGTATTAAAAACAATTTTGTATTTAACCATGCTTGTCCATGTTTTTAACGATCCTTGTAATACTAATATAGTTTGTTTTGTATTAGTTATACACTCTATAATATTGAATATGGCATGTTAGTTATGGATAGACTAAAAATCCTACCAAACAAAGGATTGAATATGTCGTGACTAATACATGTATGATTTTACTCTTGTACATTCTATTAACGATCCTTTACTTGCTGTTAATAGGCGAAAGGCAGGTCTCCTTGGCCTTTTTGGTTATTTATTGAACAAGGGTTATGGGTAGAAAATTGAAATTTTAGGTTTGTGTAGTAATAAATGTGAGATTTAGCAACCACGAAGCAGTGGAGTGGTAAGGTTGCGTATAACCACCTTCCCAAGACCGACTTGTGGGGTTACACGGGCTATGCTATTGTTGTTGAAGTGTATAGTGGGATGGGTACTATCACTCCACCCTTAACTAGCACGGTCTCTAGACCCCACTTGTGGGATTACACTTGCTATGTTGTTAACGTTGAAGCGGTGTAGTGGGATAGTTACTGTCACTCCACCCTTAACTAGCACGGCATCTGGTTCTAGCATGAGAATGGAAAACCTTTCAATAGCAGCTCCTTATCCATTAGAGTGGTTTACAAATATTAGGTGCTTAAAGAAAGAAAGAGAAAGGGTGTGAGATTTAGTGGAGTTGTTGATTTTGAGAATTCACGTAACAGCTCCCAATTAGTTTGAGATTGGGAGTAGTAGATTGATGGCTTGCAACCCTCCATAAACTGATGAATTATTATTGTTGAATTTGATTTGTGGAGCATCGTGAAAAGTGTTGAGCACGAAAGGTTGAATTTTGCAAAGTTCAAGTTATATACTCAGAAAACAGTACACAAAAGGCTTGCATTTTGTGTTCGAATCCTACTCACTCATGGTTTGGCTTCGTCTGTTAATTATTGGCGTTCATTTCTACTATTATTAGTTTATTACATAGTAAAATTTGTGATTTCATTAGTTGTTTGTTGTTGCATTGTTTCTTAGGGGCATCTTAGTTTAAGTTTGGATGCATAATTTTACTGATTGGTGTTAGTTATTATGTTTGGTATAATTTTGTCCATGTTAGTCTGATCGTGTTTCTAATTGCAGTTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGC</genome_strand>
        <mrna_strand>AAATTCACCCTTTTTTCCATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG..................................................................................TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452985" ref_strand="+" ref_description="SGN-E452985 [cSTS-18-D23]">
      <seq>gtcaaccctggccacatcaacagcctctatggacccttgctccccacccaccccccatctcaacaatccctaaaagtttgctcctttaccattttcttcttgttttttcctcccccatcaaaattttctgagccgtttataagcttttagaacattgaacagccaaatttgttgagcaagaattgatctttccctacttaaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttataataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacgcgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtataatagtgtactccactgggacgtattttctgttgttttggatgtcagtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="57930" stop="60833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58230" g_stop="58427" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.813"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="437" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60533" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="585" r_length="148" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E452985" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58230" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCACCCACCAACCCACCCCCATCTCAATAATCCCTAGAAGTTTGCTCCTTTACCATTTT-TTCTTGTTTTTTCCTCCCCCATCAAAA-TTT-T---------ATAAGATTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCA</genome_strand>
        <mrna_strand>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCA--C-CC-A--C-CCCCCATCTCAACAATCCCTAAAAGTTTGCTCCTTTACCATTTTCTTCTTGTTTTTTCCTCCCCCATCAAAATTTTCTGAGCCGTTTATAAGCTTTTAGAACATTGAACAGCCAAATTTGTTGAGCAAGAATTGATCTTTCCCTACTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATAATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACGCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATAATAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCAGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424695" ref_strand="+" ref_description="SGN-E424695 [STM-43-P18]">
      <seq>gtcaaccctggccacatcaacagcctctatggacccttgctccccacccaccccccatctcaacaatccctaaaagtttgctcctttaccattttcttcttgttttttcctcccccatcaaaattttctgagccgtttataagcttttagaacattgaacagccaaatttgttgagcaagaattgatctttccctacttaaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttataataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacgcgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtataatagtgtactccactgggacgtattttctgttgttttggatgtcagtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggaatctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="57930" stop="60829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58230" g_stop="58427" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.813"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="437" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60529" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="581" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E424695" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58230" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCACCCACCAACCCACCCCCATCTCAATAATCCCTAGAAGTTTGCTCCTTTACCATTTT-TTCTTGTTTTTTCCTCCCCCATCAAAA-TTT-T---------ATAAGATTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTT</genome_strand>
        <mrna_strand>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCA--C-CC-A--C-CCCCCATCTCAACAATCCCTAAAAGTTTGCTCCTTTACCATTTTCTTCTTGTTTTTTCCTCCCCCATCAAAATTTTCTGAGCCGTTTATAAGCTTTTAGAACATTGAACAGCCAAATTTGTTGAGCAAGAATTGATCTTTCCCTACTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATAATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACGCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATAATAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCAGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGAATCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448227" ref_strand="+" ref_description="SGN-E448227 [cSTS-2-I2]">
      <seq>cttttagaacattgaacagccaaatttgttgagcaagaattgatctttccctacttaaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttataataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacgcgggtggatgcccgaatagcattttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58069" stop="60840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58368" g_stop="58427" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="294" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.96"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60540" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="449" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E448227" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58368" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAAC</genome_strand>
        <mrna_strand>CTTTTAGAACATTGAACAGCCAAATTTGTTGAGCAAGAATTGATCTTTCCCTACTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATAATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACGCGGGTGGATGCCCGAATAGCATTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448544" ref_strand="+" ref_description="SGN-E448544 [cSTS-3-D9]">
      <seq>ttttagaacattgaacagccaaatttgttgagcaagaattgatctttccctacttaaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttataataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacgcgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggtaattaggcccaataggggatatggaaacaactggtcacatgaaccattgttacaacaagaggttgaagaagttgaagatgatggctttgatagtggcgatataattgatactggtactgangatgatgaagtgtgtcacagcccggttaaacgttctgaagagattctcatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58069" stop="61025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58369" g_stop="58427" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="293" r_length="234" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60725" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="633" r_length="340" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E448544" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58369" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAA</genome_strand>
        <mrna_strand>TTTTAGAACATTGAACAGCCAAATTTGTTGAGCAAGAATTGATCTTTCCCTACTTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATAATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACGCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGTAATTAGGCCCAATAGGGGATATGGAAACAACTGGTCACATGAACCATTGTTACAACAAGAGGTTGAAGAAGTTGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTACTGANGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTCTGAAGAGATTCTCATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329467" ref_strand="+" ref_description="SGN-E329467 [cTOD-11-B5]">
      <seq>tgatctttcccaactttaagaggtgtaatccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttattataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcatttcgctgaatggcatccgattgaataacaaagttgaactcgggtggatgcccgaatagcgttttcctctttttaaggatcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgctattttggatgtctgtgatgatgcattctgttgatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58108" stop="60791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58408" g_stop="58427" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230">
            <donor d_prob="0.805" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59658" g_stop="59891" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="254" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.707" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60386" g_stop="60491" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="360" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E329467" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58408" e_stop="58427"/>
          <exon e_start="59658" e_stop="59891"/>
          <exon e_start="60386" e_stop="60491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCTTTCCCAACTTTAAGGTAATGGGGTTTTTATTTCAGAAAGAATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTGTTTTTATGAACAATGGTAGGAGAAAGATTGAACCTTTTGATGGTTTCTTATTTCCTACAAGGAATCTTGGAAAAAGAATGTATTTTTATTGGTTTTGATTGTTTTTATGGAAAATTGTTTGGAGAATGATTGAACCCTTTGATATTTTTGATTTCCTACAAAGGATCTTGGAAAAATATTGTATTTTTATTGTTTTTTTGAAAAAATTATTAGGAAAATGCTTGAACCTTTTGATGGTTTTGATTTCCTACAAAAAATATCTTGGGAAAAGATGGTAATGTTTTTCGGTTTTGATCATTTTTATGAAAAAAATTGTCAGGAAAATGATTGAACCTTTTGATGTTTTTGATTTCCTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAGTTCTTAGGAGAATGATTGAGCCTCTTGATGGTTTTGATTTTCTACAAAGAATCTTGGAAAAAGATTGTATTTTTATTGGTTTTGATTGTTTTTGTGGAAATTGATAGAAGAATTCCTTTTTGATGGTTTTGATTTTCTACGATGAATCTACAGAAAAGATTGTATTTTTTTGGTTTTGATGTTGTGGTATTTTGAGTTAATTTGATTCCAATATGTGGGTCAATACTCAAATGTGTTTTCTTTTTGTTGATTCTTTCAATTGTGGCAGAGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTT</genome_strand>
        <mrna_strand>TGATCTTTCCCAACTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTCGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGCTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547620" ref_strand="+" ref_description="SGN-E547620 [TUS-71-J13]">
      <seq>aatcttggaaaaagattgtgtttttaattgattttgattgttgttatgaacaattgttaggagaaagattgaagcttttgatgtttttagatttctttcaaagaatcttggaaaaagattgtatttttatgagcaattgttaggagaatgattgaaccatttcatggttttgatttcgtataaagaatattgatagaagattgttttttattgggtttgattgttttatgaacaattgttaggaggatgattgaacctttgaatggttttgattgtctccaaagaatcttggaaagagattggatttttattggttttgattgtttttatggaaatttgtatggagaatgactgaaccctttgatggttttgatttcctataaagcatcttgggaaatagatggtttttattggttttgatcatttttctgaaaacattgtgatccaaatgatagaacctcctgatgtttttgattttctacaaagaattttgggaaaatattgtatttttgtaggttttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58153" stop="59276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58453" g_stop="58977" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E547620" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58453" e_stop="58977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</genome_strand>
        <mrna_strand>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTGTTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTCATGGTTTTGATTTCGTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCTCCAAAGAATCTTGGAAAGAGATTGGATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTCCTATAAAGCATCTTGGGAAATAGATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTCCTGATGTTTTTGATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364143" ref_strand="+" ref_description="SGN-E364143 [cLPP-16-I14]">
      <seq>atcttggaaaaagattgtgtttttaattgattttgattgttgttatgaacaattgttaggagaaagattgaagcttttgatgtttttagatttctttcaaagaatcttggaaaaagattgtatttttatgagcaattgttaggagaatgattgaaccatttcatggttttgatttcgtataaagaatattgatagaagattgttttttattgggtttgattgttttatgaacaatagttacgaggatgatcgaacctttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="58154" stop="59017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58454" g_stop="58717" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E364143" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58454" e_stop="58717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATG</genome_strand>
        <mrna_strand>ATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTGTTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTCATGGTTTTGATTTCGTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATAGTTACGAGGATGATCGAACCTTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599067" ref_strand="+" ref_description="SGN-E599067 [52047]">
      <seq>atccatttgtgtgatgaggctccaactctggtgacgaatggaagattctggcctgacattgatctcttgtctgttgttataataaattggaactctcatgatgtcgtggttcaatcgcacaggaatcaatttgattaactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacgcgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggtaattaggcccaataggggatatggaaacaactggtcacatgaaccattgttacaacaagaggttgaagaagttgaagatgatggctttgatagtggcgatataattgatactggtactgaggatgatgaagtgtgtcacagcccggttaaacgttctgaagagattctcatggaaagagctcagaatgggttaatttgcagggagatccccgtcaaggaaacacacaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacgaaaattggctctggtagctacggtaaaagtggtactttatacgaaggttgcactgatggaaaaacattatgccattaaggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="59365" stop="61475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59665" g_stop="59891" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60386" g_stop="60794" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="636" r_length="409" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60966" g_stop="61040" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="713" r_length="77" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89">
            <donor d_prob="0.937" d_score="0.88"/>
            <acceptor a_prob="0.775" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61130" g_stop="61174" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="761" r_length="48" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E599067" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59665" e_stop="59891"/>
          <exon e_start="60386" e_stop="60794"/>
          <exon e_start="60966" e_stop="61040"/>
          <exon e_start="61130" e_stop="61174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACAC-AAAATTGGTGCTGGTAGCTACGGT-AAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTAT-CGAA-GTTGCACTGATGG-AAAACATTATGCCATTAAG</genome_strand>
        <mrna_strand>ATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATAATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACGCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGTAATTAGGCCCAATAGGGGATATGGAAACAACTGGTCACATGAACCATTGTTACAACAAGAGGTTGAAGAAGTTGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTACTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTCTGAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCCGTCAAGGAAACACACAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACGAAAATTGGCTCTGGTAGCTACGGTAAAAGTG.........................................................................................GTACTTTATACGAAGGTTGCACTGATGGAAAAACATTATGCCATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549557" ref_strand="+" ref_description="SGN-E549557 [TUS-71-I7]">
      <seq>aactgcttctttcattttgctgaatggcatccgattgaataacaaagttgaacccgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggaaattaggcctaataggggatatggaaacagctggtcacatgaaccattgttacaacaagaggctgaagaagtcgaagatgatggctttgatagtggcgatataattgatactggtagtgaggatgatgaagtgtgtcacagcccggttaaacgttatcaagagattctcatggaaagagctcagaatgggttaatttgcagggagatccctgtcaaggaaacacacaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatagaagttgcactgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="59501" stop="62085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59801" g_stop="59891" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60386" g_stop="60794" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="500" r_length="409" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60966" g_stop="61040" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="575" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61130" g_stop="61174" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="620" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61717" g_stop="61785" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="689" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E549557" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59801" e_stop="59891"/>
          <exon e_start="60386" e_stop="60794"/>
          <exon e_start="60966" e_stop="61040"/>
          <exon e_start="61130" e_stop="61174"/>
          <exon e_start="61717" e_stop="61785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTT</genome_strand>
        <mrna_strand>AACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACCCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATAGAAGTTGCACTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361263" ref_strand="+" ref_description="SGN-E361263 [cLPP-15-L17]">
      <seq>gcttctttcattttgctgaatggggtccgattgaataacaaagttgaacccgggtggatgcccgaatagcgttttcctctttttaaggttcttgaatcaaattgttcgattgtgctgtatattagtgtactccactgggacgtattttctgttgttttggatgtctgtgatgatgcattctgttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcaagaaaaccaaaaaaggaaattaggccttataggggatatggaaacagctggtcacatgaaccattgtttcaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="59505" stop="60909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59805" g_stop="59891" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.707" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60386" g_stop="60609" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="311" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E361263" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59805" e_stop="59891"/>
          <exon e_start="60386" e_stop="60609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAGGTTGTTATCAGCTTTCGTTTTCAATTACGTGTTTTGACATACATTATATATTTCCTACTTTCGTTGAACCAATGACTATGAGAATGTTGGTTAGTGTTATCAAAGCAGTGTGCTTAAGCCAGGAAGCAAGACTCAATACTTATTGAGCTCTCCCCTTGCCTAATGTGCACTTCATTGTTTTTATCAAGGTTCTAAGGCATATTTTTCCTTGCCAATGAGCCTATTTCACTTTATCGTAATTCTTTTTCAATTTCCTTGTTCACATATTTGTTTTTCATGCCTATAGTAGTCTTGGCCAAACGTATATATTTTTCACTTTTTTCTCTCTGCGGCTTTTTTCATTAAAGTCCATGCTTTATTTGCACTTTGCACTGAAAGCCCCATTGGACTTAGAGTTTTTTTTTGCCTTTTGCTTTTGATAACACTGGTTTGGCTTATCATTTCGTTGTTGTCTAGTTGATTGATGTTAATAAGAGTTGTATGCTAATTTTCAGGTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAG</genome_strand>
        <mrna_strand>GCTTCTTTCATTTTGCTGAATGGGGTCCGATTGAATAACAAAGTTGAACCCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTGTTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTTATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTTCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559457" ref_strand="+" ref_description="SGN-E559457 [18958]">
      <seq>gttgatgaagttacagaaatggggtgctgtggatgttttggattctcttttgcagaaaaccaaaaaagtaattagccaatagggatatggaaacaactggtcacatgaaccattgttacaacaagaggttgaagaagttgaagatgatggctttgatagtggcgatataattgatactggtactgaggatgatgaagtgtgtcacagcccggttaaacgttctgaagagattctcatggaaagagctcagaatgggttaatttgcagggagatccccgtcaaggaaacacacaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="60180" stop="61294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60480" g_stop="60794" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60966" g_stop="60994" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="339" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E559457" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60480" e_stop="60794"/>
          <exon e_start="60966" e_stop="60994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGA</genome_strand>
        <mrna_strand>GTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGC-AGAAAACCAAAAAA-GTAATTA-GCC-AATAGGG-ATATGGAAACAACTGGTCACATGAACCATTGTTACAACAAGAGGTTGAAGAAGTTGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGTACTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTCTGAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCCGTCAAGGAAACACACAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687806" ref_strand="+" ref_description="SGN-E687806 [T3_tus_81_C04]">
      <seq>ccctttaaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatcgaagttgccctgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttcttcgtgaggtttcgatcatgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="60477" stop="64641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60771" g_stop="60794" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.792"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60966" g_stop="61040" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="99" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61130" g_stop="61174" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="144" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61717" g_stop="61793" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="219" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61926" g_stop="62013" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="307" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62100" g_stop="62224" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="432" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="528" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="595" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64288" g_stop="64341" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="649" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E687806" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60771" e_stop="60794"/>
          <exon e_start="60966" e_stop="61040"/>
          <exon e_start="61130" e_stop="61174"/>
          <exon e_start="61717" e_stop="61793"/>
          <exon e_start="61926" e_stop="62013"/>
          <exon e_start="62100" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGAATGTCCTTTATTTCTTCCCTTGAGTTTCAATCTTCCTTTTGTGGGTTATCCGCAAATTTTATCCTGTAGTATTAGCTATTTGTCCGCTGAATTGTTTATTTGCTGTCCTAAAGTTTGTCAAGTTAATTGCAGGTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTT</genome_strand>
        <mrna_strand>CCCTTTAAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATCGAAGTTGCCCTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGA-G-....................................................................................................................................GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327155" ref_strand="+" ref_description="SGN-E327155 [cTOC-18-B7]">
      <seq>aaagttgtgcgcacagaggatgaagatgggaacaagatggttaacgaatatgtccgtgaacacaaaattggtgctggtagctacggtaaagtggtactttatcgaagttgcactgatggaaaacattatgccattaaggcctttcacaagtctcacttatcaaagatgcgggtggcgccttcagaaactgctatgggtgatgttcttcgtgaggtttcgatcatgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaagtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctggtttcactgctcctgaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="60477" stop="64447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60777" g_stop="60794" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60966" g_stop="61040" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="93" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.775" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61130" g_stop="61174" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="138" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61717" g_stop="61793" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="213" r_length="75" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61926" g_stop="62013" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="301" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62100" g_stop="62224" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="426" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="522" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64085" g_stop="64147" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="585" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E327155" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60777" e_stop="60794"/>
          <exon e_start="60966" e_stop="61040"/>
          <exon e_start="61130" e_stop="61174"/>
          <exon e_start="61717" e_stop="61793"/>
          <exon e_start="61926" e_stop="62013"/>
          <exon e_start="62100" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTGCGCACAGAGGTAACAGCAGGAAAACTCTTTCTTACATTCGCTGTGAAAATCCTCTACTCATAATTGAGACATGGATGGCTCAGACATACGTTTGTACAAGGATCACTAGTTTTGATTTGTCAGGGAACAAAAATGGGAGGTGTAACTTGACTGTTCTCCTCTGTTGTCATTTTGATTCAGGATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTGGTGAGCTCAAAGATATCAATGTTATCTTTCTTTCTTTTTTTCGGTTGGAGGGATAAAAGTTGACATTTGATCACGTTGGGATGGCACAGGTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAGGTAAAAATTTTAACATATCCAGTTAGCACTGGGGAATTTACTTGGTCACAATATTTACTTAGGTTAATTGTACTAGTGGTATTCCCATATCAAAAAAAAATAAAATTGTTTCTTTATTTTTCCGATGAAGTTCAAACGCTAGACGTAAGAGTGGGATTTGAAACTTATTGTTTCTTTACTTAGTGATAGGAGTTTTTTTGCATTGTACTATTCTTAATGAGTTCCATTTAGGATTTTGCTGTTGTATTTATACTGGCATCTAGGGTATCTGATGTTGATTTGGAGTTATATTTTTGAATAATCAACAACCAGACTGCCCATTCCAATTCATTCATAGATACATCATACATGGAAGGGATAATTAGGTAGTTGAATTACTCTATGCTAGGGAAAATTGTATTTAGAGTCGTGGAGAAACAGCCGGAAAAGGGAAGTGGACAATAACACAGAGTCGCAGACAATTTTGTCCGCAAAGAACAATTAGTGTTGTTACTTGATTAAAGTTTTCAAATAGTGATAATGTTTGTTTTTATTGAATGCAGGCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGAATGTCCTTTATTTCTTCCCTTGAGTTTCAATCTTCCTTTTGTGGGTTATCCGCAAATTTTATCCTGTAGTATTAGCTATTTGTCCGCTGAATTGTTTATTTGCTGTCCTAAAGTTTGTCAAGTTAATTGCAGGTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGC</genome_strand>
        <mrna_strand>AAAGTTGTGCGCACAGAG...........................................................................................................................................................................GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG.........................................................................................GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGA-G-....................................................................................................................................GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAAGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGGTTTCACTGCTCCTGAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727102" ref_strand="+" ref_description="SGN-E727102 [LA13DA02]">
      <seq>catagatgcgggtggcgccttcagaaactgctatgggtgatgttcttcgtgaggtttcgatcatgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgttactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaactaactgcagagtgtttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaactaagatgtctttttttccccggcaaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="61439" stop="65429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61739" g_stop="61793" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61926" g_stop="62013" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="141" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62100" g_stop="62224" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="266" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="362" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="429" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="545" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="624" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64874" g_stop="65129" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="880" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E727102" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61739" e_stop="61793"/>
          <exon e_start="61926" e_stop="62013"/>
          <exon e_start="62100" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGAATGTCCTTTATTTCTTCCCTTGAGTTTCAATCTTCCTTTTGTGGGTTATCCGCAAATTTTATCCTGTAGTATTAGCTATTTGTCCGCTGAATTGTTTATTTGCTGTCCTAAAGTTTGTCAAGTTAATTGCAGGTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCA</genome_strand>
        <mrna_strand>CATAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGA-G-....................................................................................................................................GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAAGATGTCTTTTTTTCCCCGGCAAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325037" ref_strand="+" ref_description="SGN-E325037 [cTOC-13-B15]">
      <seq>tgaaaatgctgtgccatcccaatatagttaatcttgttgaggtgattgatgatccagaaacagataacttctacatggttctcgagtaccgtggaaggaaaatgggtttgtgaagaattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="61636" stop="64810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61936" g_stop="62013" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.382" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62100" g_stop="62224" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="205" r_length="127" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="301" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="368" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="484" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64488" g_stop="64510" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="507" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E325037" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61936" e_stop="62013"/>
          <exon e_start="62100" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGGGTATTATCCAGTTTCTTTTTTGTGCAGTCGTCCAGCTTCTTCAATTATATGAATGTCAACTAACATTTCCCCCCTTTACTAAAAAGTTCTCGAGTA-CGTGGAAGGAAAATGGGTTTGTGAAG-ATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCT</genome_strand>
        <mrna_strand>TGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG......................................................................................TTCTCGAGTACCGTGGAAGGAAAATGGGTTTGTGAAGAATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273413" ref_strand="+" ref_description="SGN-E273413 [cLEN-3-C22]">
      <seq>aaagttctcgagtacgtggaaggaaaatgggtttgtgaagattctggtcccccgtgtgttcttgaagaaaataaagcacggctgtacttgcgtgatatagtgtctggcttgatgtatctgcattctcataatatcatacatggggatattaagccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="61796" stop="64825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62096" g_stop="62224" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63667" g_stop="63762" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="225" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="292" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="408" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64488" g_stop="64525" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="446" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E273413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62096" e_stop="62224"/>
          <exon e_start="63667" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCATGTAAGTCCCAATCGTTGGGATCTATGTATTTATTAATTATTTTTATATATTGCACACATATTTTTTTTACTTTCTTCTTCATTGCGCTTCTTTACTAAAGCCAACATTGTAATTGCACTTCGCATCCCCAACAGACCTCAGTTATACTCTTTTCGGTTTTGACAATGTTGTTACCTTTTAACGCTTATATGCAAGGATTCTAGATCATGTCCTCTATCAGTCTATAACTTACAAATCTCAATCACTTTAGTGAAGTGTTAAGTCTCTTGTAAAAGAGAAAAGATTGATCTGTATAAAATAACTCTGGATCCCTTATCCATTTCTAGAACAAGTTTCTGAAGACTCTGCTCCTGAAGAATTTACCCATGCATTGTCAATACTTTCATCTCAGTTTTCTACTCTTGCATTTTTTTCAAAACTGTACCGAAAAATGATTTCTTGGGACACGTGTATTGGAAACAACCTCCCTACTCCACAAAGGTAGGAGGTGTAAGGTCTATGCACACCATATTCTCCCCAAACTCCAATTGTGAGACTATACTGGGCATGTTGTTGTTGTAAGGTCATGAATATAAGTTGCTTGGTCAAGATAGGTAGTTTCCCGTTGATTTCCTGTAAAACTAAGATAGGATGGCGTGTGAAAAAATTCATTTGACGACTTTGTTGACGATGTGAATCTATTTCATTTATGTGATAATTTATGTAGCCGAGTCACCAGGATTTTCTTGGACTCCTTTTCTAGAGGATAGATAGACCCTGTTGAATAACAATGATCTCTTGCTTAGGGAGATGTTTTCCCTCCCTCTCTCCCGTTTTTAAAGGAAATATATGGGCCTGTAGTTAATTGATTTGCACTTATCGAAGACCAAAATGATATCTGTTTCATTCTATCGGTTGTTCCATCAGCTAGTTGTTTGGCTAGAGAGCTCGGGTGCCTTTGATGTCTTTTTCTTTCCTAATGAGCATTGAGATAGGACTGTAATGAACCGAGTGCAGTGTTGTGAAAGGCACGCTCAAGCCCTAAACCGAGGATCAAAATTTGTTGAGCGCTTCGTGTCACTTATGGACTATATATATATATTTGTATTTTTTTCCGTTTGTGCCTTTTTCAATTGAAGCTTATGTTTTGTTTGCGCTTAAAGGCCCATTGGGAACCTTTGGAGCTTTTTTGCATTTTTTGTTATTATCGAGTGTTCTGCTTTTCCTACAAAGCGGAAAGGTAGTTCTTTTAGCAGCATCGAAATCCCAATGGGATGTGGATTACTTGCTTTATCAAGTAAACTAGGACTTGAAACTTTAGAATTTAGTGTCTCCGCTGGGCATAAGAATTCATGCATTAGTAGTAATTTTACGCTTATCAGACACCTTATCTTTAATGCTTTACATTCCCGATCCACGCCATAGTGTTTTACCTATGTCCTTTCTTGTTTTGTGTTGAGCAGAATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAA</genome_strand>
        <mrna_strand>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328707" ref_strand="+" ref_description="SGN-E328707 [cTOC-23-G18]">
      <seq>ccagacaatcttttagtgtctgctgctggtaaggtgaagattggtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgttactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaactaactgcagagtgtttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagatacactaggatgtctttttttccccggcaaattgcatcttgcaggagcaatcggatacatgttatgtgaacgatagtagacaatgangtgttcgagtaaattttgtttggtttctgtcatactccgagagtactcgttcagttgtaatggcagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="63391" stop="65548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63691" g_stop="63762" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="139" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="255" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="334" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64874" g_stop="65248" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="709" r_length="375" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E328707" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63691" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCG</genome_strand>
        <mrna_strand>CCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATACACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGACAATGANGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547619" ref_strand="+" ref_description="SGN-E547619 [TUS-71-J13](-)">
      <seq>agtgactgctgctgtaaggtgaagattagtgatttcagcgtcagccaagtttttgaggatgataatgataaactccgtcgatctcctggcactcctgttttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccattcattctccccgacgatatgaatccgctactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaattaactgcagagtgttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaaactaggatgtctttttttccccagcaaattgcacttgcaggagcaatcggatacatgttatgtgaacgatagtagaaaatgagacgttcgagtaaattttgtttggtttctgtcatactccgagagtactatttcagttgtaatggcagcgagacatcgcgatatgttttcgttgtttttttgttggtgatgaactgatgatggtacaagttttgtgttttgatacttagaagaaagccacacatatttgtttttgtggatatttgtatgtgttttttttatatgaagaagaattttcatatgatagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="63405" stop="65707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63705" g_stop="63762" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64085" g_stop="64151" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="124" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="240" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="320" r_length="80" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64874" g_stop="65410" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="864" r_length="544" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E547619" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63705" e_stop="63762"/>
          <exon e_start="64085" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAGGTATGACCAAGCTCAACAATGTTCTGTTCTTTAAATAGAATTTCCAGCCCTAGTTTCTTATAATCTTACGACTAAGAATGTGTATATGAATAGAAATAGAGATTGGTTGTCATAGAGGTCGATAGTCTTTGTTTAGACGCACCTAGTTGGAATAATGTCCTAATGATAGGAAATTTATTTGTACTTGTTGGCTCTAAACTTTTGGGGCTTGAAGGGTTTGGTGGTGATTGCGTTAATTTAAGTTGTTTTCGTTTAATATTTGTTCTTTCCTGTTCTTTTCCGGTATATTACTAACTGTAGTTGGAACTATTCCTGTTTGTAGGATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCA-TCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGAT-AAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTG-TTTTTT-TT-GT--TG--GTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCA-ACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTT</genome_strand>
        <mrna_strand>AGTGACTGCTGCT-GTAAGGTGAAGATTAGTGATTTCAGCGTCAGCCAAGTTTTTGAG..................................................................................................................................................................................................................................................................................................................................GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATTCATTCTCCCCGACGATATGAATCCGCTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAATTAACTGCAGAGTG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAAACTAGGATGTCTTTTTTTCCCCAGCAAATTGCA-CTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGACGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTATTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTGTTGGTGATGAACTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGAAGAAAGCCACACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547568" ref_strand="+" ref_description="SGN-E547568 [TUS-71-I7](-)">
      <seq>tttcactgctcctgaatgctgcgtaggagatagatatcatggaaaatgtgctgacacgtgggcggttggtgttaccctttattgcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaataaccccatcattctccccgacgatatgaatccgctactgaagaatttattagaggggcttctctgcaaagatccaacacaaaggctaactctcgaaagtgtttgtcaacacgagtggttcctaggagatgaaggccccatccctcagttctcgtgttggtgccagcgccaaaagttgcagaaagacgtacaggatgggagcgcagaggatacccctacttgaattaactgcagagtgttctagtatgtttataacgttccgttctctcttctcagttcttgtaggaagataaaactaggatgtctttttttccccagcaaattgcacttgcaggagcaatcggatacatgttatgtgaacgatagtagaaaatgagacgttcgagtaaattttgtttggtttctgtcatactccgagagtactatttcagttgtaatggcagcgagacatcgcgatatgttttcgttgtttttttgttggtgatgaactgatgatggtacaagttttgtgttttgatacttagaagaaagccaacatatttgtttttgtggatatttgtatgtgttttttttatatgaagaagaattttcataaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="63826" stop="107354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64126" g_stop="64151" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="142" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="221" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.227" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64874" g_stop="65407" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="761" r_length="540" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65408" i_stop="65610" i_length="203">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65611" g_stop="65630" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="780" r_length="19" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E547568" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64126" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65407"/>
          <exon e_start="65611" e_stop="65630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTGCTCCTGAATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGAT-AAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTG-TTTTTT-TT-GT--TG--GTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTATTAAGTGAACATCCTTGTTATAGATTTTTAGTATATGTCCCTCTTTTTTTATCGCTTTTCTTGAGCCGAGGATCTATCTAGAACCGTCTCTCTACCTCTCGCATGATAGAGGTAAGGTATGCATAACTAATATGAGAAAATGTTATATTACATTCTATAATTTTGTATATATTATATGATTGTCTAATATCGTCTATAGTATTACAGAGGCGGAGCCAG</genome_strand>
        <mrna_strand>TTTCACTGCTCCTGAATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGCTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAATTAACTGCAGAGTG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAAACTAGGATGTCTTTTTTTCCCCAGCAAATTGCA-CTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGACGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTATTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTGTTGGTGATGAACTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATAAAAAAAAAAAAAAAAAA...........................................................................................................................................................................................................AAAACTCGAGG-GGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424696" ref_strand="-" ref_description="SGN-E424696 [STM-43-P18]">
      <seq>atgctgcgtaggagatagatatcatggaaaatctgctgacacgtgggcggttgtgttacccctttatggcatgatcttgggaaaatacccgtttctaggagaaactctccaggatacatatgacaagatagtaaatacccccatcattctccctgacgatatgaatccgctactgaagaatttactagaggggctcctctgcaaagatccaacacaaaggctaactctcgaaagtgtgtctcaacacgagtggttcataggagatgaaggccccatccctcagtattcgtgttggtgccagcgccataagttgcagaaagacgtacaagatgggagcgcagaggatactcctacttgaattaactgcagaatgttctagtatgtttataacgttccgttctctcttctaagttcttgtaggaagataaactaggatgtcttttttttccgacaaattgcacttgcaggagcaatcgaatacatgttatgtgaacgatagtagaaaatgagatgttcgagtaaattttgttcggtttctgtcatactccgagagtactcgttcagttgtaatggcagggagacatcgcgatatgttttcgtcgtttttttgttggtgatgatggtacaagttttgtgttttgatacttagcagaaagacaacatatttgtttttgtggatatttgtatgtgtttttttatatgagggagaatttcatatgataccaattggatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="63985" stop="65695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64141" g_stop="64151" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64288" g_stop="64403" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="127" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64488" g_stop="64566" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="206" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="0.227" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64874" g_stop="65411" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="736" r_length="530" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E424696" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424696" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64141" e_stop="64151"/>
          <exon e_start="64288" e_stop="64403"/>
          <exon e_start="64488" e_stop="64566"/>
          <exon e_start="64874" e_stop="65411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGCGTAGGTCAGGACTTCTTGGCTCGTTGAATGCTGACATCTAAATTATCGTTAAACTTAGCTGACTACTTGTTTGGGACCAAGGCATAATTTTTCGTTGTTGTTGTTATTGAAGTGGTTTTTTCTGTATTCTTTATTAATAGGAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTA-CCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAGGTGCGAGTCTAATCGTATATCCGAGGTACAACATAGACTTTAGTCTTTCCTGCTTTCTTAACTGCCTGTATTTCGTCTTTCCAGATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAGGTTTGTCTCTCGTCCTGCTTGATATCTTGACTCTGTGTAGTCTCCTATTCTTCTGTGTGTTGCTTCATTTGCTTTATATCTTGCTATTTGGTTGTCATATTTTCTTGCAATCCTTCTTCGATAACATTCCTTTTTGGCCGAGGGTCTATCGGAAACAACCTCTCTACTTGCCAAGGTAGGGGTTAAGGTCTGCGTACTTCCTACCCTCCCTCGTCCCCACTTTTCGGATTACACTCTGTATGTTGTTGTTGTTGGTAGCTTACTAATTTCTCCACCTATTTTCCTAACAAAAAGTCCTTTTGCATAGATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTA</genome_strand>
        <mrna_strand>ATGCTGCGTAG........................................................................................................................................GAGATAGATATCATGGAAAATCTGCTGACACGTGGGCGGTT-GTGTTACCCCTTTATGGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG....................................................................................ATAGTAAATACCCCCATCATTCTCCCTGACGATATGAATCCGCTACTGAAGAATTTACTAGAGGGGCTCCTCTGCAAAG...................................................................................................................................................................................................................................................................................................................ATCCAACACAAAGGCTAACTCTCGAAAGTGTGTCTCAACACGAGTGGTTCATAGGAGATGAAGGCCCCATCCCTCAGTATTCGTGTTGGTGCCAGCGCCATAAGTTGCAGAAAGACGTACAAGATGGGAGCGCAGAGGATACTCCTACTTGAATTAACTGCAGAATG-TTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTAAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTT-TCCGACAAATTGCA-CTTGCAGGAGCAATCGAATACATGTTATGTGAACGATAGTAGAAAATGAGATGTTCGAGTAAATTTTGTTCGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGGGAGACATCGCGATATGTTTTCGTCG-TTTTTTTGTTGGTGATGATGGTACAAGTTTTGTGTTTTGATACTTAGCAGAAAGACAACATATTTGTTTTTGTGGATATTTGTATGTG-TTTTTTTATATGAGGGAGAA-TTTCATATGATA--CCAATTGGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587521" ref_strand="+" ref_description="SGN-E587521 [41054]">
      <seq>catataaaaaaacacatacaaatatccacaaaaaacaaatatgttggctttctgctaagtatcaaaacacaaaacttgtaccatcatcaccaacaaaaaaacgacgaaaacatatcgcgatgtctccctgccattacaactgaacgagtactctcggagtatgacagaaaccgaacaaaatttactcgaacgtctcattttctactatcgttcacataacatgtattcgattgctcctgcaagtgcaatttgtcggaaaaaaaagacatcctagtttatcttcctacaagaacttagaagagagaacggaacgttataaacatactagaacattctgcagttaattcaagtcggagtatcctctgcgctcccatcttgtacgtctttctgcaacttatggcgctggcaccaacacgaatactgagggatggggtcttcatctcctatgaaccatttcgtgtttgaagaaaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="65674" stop="64601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65374" g_stop="64898" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E587521" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65374" e_stop="64898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATAAAAAAAACACATACAAATATCCAC-AAAAACAAATATGTTGGCTTTCTTCTAAGCATCAAAACACAAAACTTGTACCATCATTACCAACAAAAAAAACAACGAAAACATATCGCGATGTCTCGCTGCCATTACAACTGAACGAGTACTCTCGGAGTATGACAGAAACCAAACAAAATTTACTCGAACACCTCATTTTCTACTATCGTTCACATAACATGTATCCGATTGCTCCTGCAAGATGCAATTTGCCGGGGAAAAAAAGACATCCTAGTTTATCTTCCTACAAGAACTGAGAAGAGAGAACGGAACGTTATAAACATACTAGAAACACTCTGCAGTTAGTTCAAGTAGGGGTATCCTCTGCGCTCCCATCCTGTACGTCTTTCTGCAACTTTTGGCGCTGGCACCAACACGAGAACTGAGGGATGGGGCCTTCATCTCCTAGGAACCA-CTCGTG-TTGACAAACACTTT</genome_strand>
        <mrna_strand>CATAT-AAAAAAACACATACAAATATCCACAAAAAACAAATATGTTGGCTTTCTGCTAAGTATCAAAACACAAAACTTGTACCATCATCACCAAC-AAAAAAACGACGAAAACATATCGCGATGTCTCCCTGCCATTACAACTGAACGAGTACTCTCGGAGTATGACAGAAACCGAACAAAATTTACTCGAACGTCTCATTTTCTACTATCGTTCACATAACATGTATTCGATTGCTCCTGCAAG-TGCAATTTGTC-GGAAAAAAAAGACATCCTAGTTTATCTTCCTACAAGAACTTAGAAGAGAGAACGGAACGTTATAAACATACTAG-AACATTCTGCAGTTAATTCAAGTCGGAGTATCCTCTGCGCTCCCATCTTGTACGTCTTTCTGCAACTTATGGCGCTGGCACCAACACGAATACTGAGGGATGGGGTCTTCATCTCCTATGAACCATTTCGTGTTTGAAGAAAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254120" ref_strand="+" ref_description="SGN-E254120 [cLEG-34-E3]">
      <seq>attctctctctaaaaattccggtgagatggtcgccgtaagttcgttttccggcgaatatccgggcgttatagttacctgtgatcggatcgaaacttacttcactccagcaatggaataatcaccacactggtttttatctccggcgacgctaatttgcgactggcagaaataagcagctggatttccgataaggagtcattagcggttggtagtgaattactggtttttggccgtgagttatttgattttgctatatggaaatacagtttgattcaaaacaactgggaaaaatgtgaagggatgaatcatcgtcgttgtctgtttggatcgggtagtcttggttcaatttctattgttgcagggggtagtgacaagaatgggaatgtactaaaatctgccgagctttatgattctttgactggtacatgggaaatactgcccaacatgcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="68342" stop="70319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68642" g_stop="68829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68830" i_stop="69667" i_length="838">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69668" g_stop="70019" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="540" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E254120" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68642" e_stop="68829"/>
          <exon e_start="69668" e_stop="70019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCGGTGAGATCCGAATAGGTTTCCTTACCTGGTTTGGATCCGAATCGCTATCTGTTTTTCCTTACTGAATAATTCATTTCTCATTCAATTTGCCTCTTTTCTCAAGTTTAATAAGCTTTGTTCTGTGTATCTTATATTTTCTGCTTCAAAATAAGGGAAAATTTCTGAATAATATGTGAAATTTGAATCTCAGTGGAAAAAACGCGAGGAAGTTTGAATATTTTGGGTAATATTTCGAACTATTTGATTATAGTTGCTAGAGTTTTGACATACTCATGAAGTTGTAGTAGTTAATAAGCGAGCTGGAGTTCATAGCTTTTTGGTGAGAGAGAAATTGATATTTTGATAAAAAAATTTGGGAATTTTGTGTTTTCAGAAATAAATTTTGTGGCTTTTTTCAAGTGTGTGATTGATTGGAAACTGTGGGTTGTGTATGATAGCATGGCTTCTGAAACTAAGAAGTTGAAGAATGGGTATTTATTTAGGAAGGAGGAAGAGGAGAAGGGGAAGAGAATGAGGTTAGAAGAAGAAGAAGATGATGATGGTCATTGCAAATTTAGATCAAGTGAATCACTTCTTCCAGGCCTACATGATGATGTTGCTTTAACATGTCTTGCTCGGGCATCTAGATCAGATTATGCATCGTTGTCGTGCCTGAATGCTAGGTTTAATTCATTAGTCAAGAGTGGTTATTTATATGAATTAAGGAGGCGGATAAGTGTTGTTGAACACTGGGTTTATATGGTTTGTGATCCTCGGGGTTGGGAGGCTTTTGATCCTTTCAGAAAAAAATGGTTGAGATTACCGAAAATTCCCTGTGATGATTGCTTTAATTATGCAGATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTG</genome_strand>
        <mrna_strand>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCGGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594657" ref_strand="+" ref_description="SGN-E594657 [37913]">
      <seq>ggaaatactgccaaacatgcattctccccgtagattatgttctggctttttcatggatgaaaaattttatgtgctcggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacgaggaagtggagaaaaattgagtgcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggtaaagaagtatgacaagaaaaaaaactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatttggtgaagaacttcttgtgataggtggcaataggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtataccattgtgccgtgatgggttgttgagaagttcaatccaaccaaatggagaaagaagtccattccgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="69609" stop="70770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69909" g_stop="70476" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E594657" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69909" e_stop="70476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAG-A-CTC-ATCCAACCAAATGGAGAAAGAAGT-CATT-TGTTTC</genome_strand>
        <mrna_strand>GGAAATACTGCCAAACATGCATTCTCCCCGTAGATTATGTTCTGGCTTTTTCATGGATGAAAAATTTTATGTGCTCGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACGAGGAAGTGGAGAAAAATTGAGTGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTAAAGAAGTATGACAAGAAAAAAAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATTTGGTGAAGAACTTCTTGTGATAGGTGGCAATAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACCATTGTGCCGTGATGGGTTGTTGAGAAGTTCAATCCAACCAAATGGAGAAAGAAGTCCATTCCGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283862" ref_strand="+" ref_description="SGN-E283862 [cLER-13-I11]">
      <seq>gcattctccccgcagattatgctctggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgggttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="69627" stop="70795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69927" g_stop="70495" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E283862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69927" e_stop="70495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTA</genome_strand>
        <mrna_strand>GCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302705" ref_strand="+" ref_description="SGN-E302705 [cLEY-1-M15]">
      <seq>tggctttttcatggatggaaaattttatgtgataggtgggatgactaatcctaccgattctttgacttgtggggaagagtttgatctacaaacaaggaagtggaggaaaattgagggcatgtatccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgagttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgtaattccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="69651" stop="70805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69951" g_stop="70505" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E302705" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69951" e_stop="70505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACAC</genome_strand>
        <mrna_strand>TGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGAGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302706" ref_strand="+" ref_description="SGN-E302706 [cLEY-1-M15](-)">
      <seq>gagggcatgttccaaacgtcaatagagctgctcaggcacctcctcttgttgcagttgttaataaccaactatatgcagttgaatatctaaccaacatggttaagaagtatgacaagaaaaataactcatgggaggtattgggaagacttcccgtgagggctgattcttcgaatggttggggtcttgctttcaaagcatgtggtgaagaacttcttgtggtaggtggcaacaggggtccagaaggtgaagctattatattgagttcttgggcaccaaaatcagggtgtaaagacggcaccttggattggaaggtcatcggcctaaaagagcattctggtgtctttgtatacaattgtgccgtgatgggttgttgagactcatccaaccaaatggagaaagaagtcatttgtttcaactgttgtttctagcgtaattccaacacattgtttgatttattagcatttctttttatttaacatctttcaggtgtttgagataagcagttgttcttagctaaaatgtcctcttaactggatggttattttcactcactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="69763" stop="70918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70063" g_stop="70627" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E302706" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70063" e_stop="70627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</genome_strand>
        <mrna_strand>GAGGGCATGT-TCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614464" ref_strand="+" ref_description="SGN-E614464 [64251]">
      <seq>tttttttttagatcagtgaatcaaccatattaactcaatgaacaaggtgaaaaccgcaatctggaagcaagcagtctggagaatgagtgagtgaaaataaccatccagttaagaggacgttttagctagaacaattgcttatctcaaacacctgaaagatgttaaataaaaaacaaatgctaataaatcaaacaatgtgttggaattacgctagaaacaacagttgaaacgaatgacttctttctccatttggttggatgaacttctcaacaacccatcacggcacaattgtatacaaagacaccagaatgctcttttaggccgatgaccttccaatccaaggtgccgtctttacaccctgattttggtgcccaagaactcaatataatagcttcaccttctggacccctattgccacctatcacaagaagttcttcaccaaatgctttgaaagcaagaacccaagcattcgaagaatcagccctcacgggaagtcttcccaatacctcccatgagttactttacttgtcatacttctttaccatgtcggttaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="71000" stop="69849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70690" g_stop="70149" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="555" r_length="544" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E614464" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70690" e_stop="70149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTGAATCAACCATATTAACTCAATGAACAAGGTGAAAACCGAAATCTGGAAGCAAACAGTCTGCAGAATGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACATTTTAGCTAAGAACAACTGCTTATCTCAAACACCTGAAAGATGTTAAAT-AAAAAGAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACAAATGACTTCTTTCTCCATTTGGTTGGATG-A-GTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTGTTGCCACCTACCACAAGAAGTTCTTCACCACATGCTTTGAAAGCAAGACCCCAACCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTATTTTTCTTGTCATACTTCTTAACCATGTTGGTTAGA</genome_strand>
        <mrna_strand>ATCAGTGAATCAACCATATTAACTCAATGAACAAGGTGAAAACCGCAATCTGGAAGCAAGCAGTCTGGAGAATGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACGTTTTAGCT-AGAACAATTGCTTATCTCAAACACCTGAAAGATGTTAAATAAAAAACAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACGAATGACTTCTTTCTCCATTTGGTTGGATGAACTTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTATTGCCACCTATCACAAGAAGTTCTTCACCAAATGCTTTGAAAGCAAGAACCCAAGCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTACTTTACTTGTCATACTTCTTTACCATGTCGGTTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357546" ref_strand="+" ref_description="SGN-E357546 [cTOS-23-N17]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtgttttaagaactatgctttattgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74878" stop="73646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="73945" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E357546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="73945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357722" ref_strand="+" ref_description="SGN-E357722 [cTOS-24-P11]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtgttttaagaactatgctttattgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74878" stop="73646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="73945" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E357722" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="73945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423602" ref_strand="+" ref_description="SGN-E423602 [STM-42-C20]">
      <seq>caaactacaaagtggctttcacaataaagcatagtttttaaaacacataacacatatttcttccataaacttacaagagaaacttacagacaagcaactcacatacacacatggacacatacacaagacatcaagtgcagttccagaagggagaaagtaagattacagtatcaactttcaacctacaacctcccctctatttattcccaacatacaataaaagcaaaagttgaagaaaagacgacataaaatgcaccaaactcttgacaaaactctagtctccccaccattgatgagcaaacacaccacttctccttagagttttgaaaatgctcatgcagtccccacaaagagcatttttgcagtctacagccgagcagcgaaggaacagctcatcaacatggcatattgatccagttttgaatagttctgctagaatatttagctctgctgctctagcattcatcaggaggacgacatagtctccatcttcaactgtttcactaaaccaacgaatgaagtcgaatccttcatgatctagcggtgcacccaaatattcgtcagtgtcaacaaatggcaaagtagcctctccggtgacagcgagtcctggatgatacacaaagttaataccaggattcttcacatataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="73652" stop="74885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73955" g_stop="74585" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="649" r_length="631" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E423602" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73955" e_stop="74585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAATAAAGCATAGTTCTTAAAACACATAACACATATTT-TTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACT-AAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAA</genome_strand>
        <mrna_strand>TCACAATAAAGCATAGTTTTTAAAACACATAACACATATTTCTTCCATAAACTTACAAGAGAAACTTACAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCTATTTATTCCCAACATACAATAAAAGCAAAAGTTGAAGAAAAGACGACATAAAATGCAC--CAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAATGCTCATGCAGTCCCCACAAAGAGCATTTTTGCAGTCTACAGCCGAGCAGCGAAGGAACAGCTCATCAACATGGCATATTGATCCAGTTTTGAATAGTTCTGCTAGAATATTTAGCTCTGCTGCTCTAGCATTCATCAGGAGGACGACATAGTCTCCATCTTCAACTGTTTCACTAAACCAACGAATGAAGTCGAATCCTTCATGATCTAGCGGTGCACCCAAATATTCGTCAGTGTCAACAAATGGCAAAGTAGCCTCTCCGGTGACAGCGAGTCCTGGATGATACACAAAGTTAATACCAGGATTCTTCACATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352051" ref_strand="+" ref_description="SGN-E352051 [cTOS-13-H13]">
      <seq>tgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttatataaaaatatgtgttatgtggtttaagaactatgctttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74878" stop="73659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74578" g_stop="73959" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E352051" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74578" e_stop="73959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATT</genome_strand>
        <mrna_strand>TGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGGTTTAAGAACTATGCTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425773" ref_strand="+" ref_description="SGN-E425773 [STM-45-F17]">
      <seq>ctcctttttttaaacacataacacatattttcttccataaacttacaagagaaacttacagacaagcaactcacatacacacatggacacatacacaagacatcaagtgcagttccagaagggagaaagtaagattacagtatcaactttcaacctacaacctcccctctatttattcccaacatacaataaaagcaaaagttgaagaaaagacgacataaaatgcaccaaactcttgacaaaactctagtctccccaccattgatgagcaaacacaccacttctccttagagttttgaaaatgctcatgcagtccccacaaagagcatttttgcagtctacagccgagcagcgaaggaacagctcatcaacatggcatattgatccagttttgaatagttctgctagaatatttagctctgctgctctagcattcatcaggaggacgacatagtctccatcttcaactgtttcactaaaccaacgaatgaagtcgaatccttcatgatctagcggtgcacccaaatattcgtcagtgtcaacaaatggcaaagtagcctctccggtgacagcgagtcctggatgatacacaaagttaataccaggattcttcacatataaagacaggtgcggaggtgttatgatcaatgacgaaacattgaacaagtggtgaggtatcggataatgaaggcttgaatgttcatgaacttgggcaagtaatgagatttgtgtctcaaactgtccaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="73671" stop="75087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73966" g_stop="74659" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74660" i_stop="74733" i_length="74">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74734" g_stop="74787" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="751" r_length="55" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E425773" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73966" e_stop="74659"/>
          <exon e_start="74734" e_stop="74787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTTCTTAAAACACATAACACATA-TTT-TTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACT-AAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACA-GTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATG-AGGCTTGAATGTTCTTGCAAGAGTTGATTCTACGAATTCCCCTGCACCAACGTTGATATACACCAGTTTGTTCCTAGATGAGATGTTCATGAACTTGGGCAAGT-ATGAGATTTGTGTCTCAAACTGTCCAAGCTTC</genome_strand>
        <mrna_strand>CTCCTTTTTTTAAACACATAACACATATTTTCTTCCATAAACTTACAAGAGAAACTTACAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCTATTTATTCCCAACATACAATAAAAGCAAAAGTTGAAGAAAAGACGACATAAAATGCAC--CAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAATGCTCATGCAGTCCCCACAAAGAGCATTTTTGCAGTCTACAGCCGAGCAGCGAAGGAACAGCTCATCAACATGGCATATTGATCCAGTTTTGAATAGTTCTGCTAGAATATTTAGCTCTGCTGCTCTAGCATTCATCAGGAGGACGACATAGTCTCCATCTTCAACTGTTTCACTAAACCAACGAATGAAGTCGAATCCTTCATGATCTAGCGGTGCACCCAAATATTCGTCAGTGTCAACAAATGGCAAAGTAGCCTCTCCGGTGACAGCGAGTCCTGGATGATACACAAAGTTAATACCAGGATTCTTCACATATAAAGACAGGTGCGGAGGTGTTATGATCAATGACG-AAACATTGAACAAGTGGTGAGGTATCGGATAATGAAGGCTTGA..........................................................................ATGTTCATGAACTTGGGCAAGTAATGAGATTTGTGTCTCAAACTGTCCAAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354154" ref_strand="+" ref_description="SGN-E354154 [cTOS-16-N16]">
      <seq>aagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagttatataaaaatatgtgttatgtgttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74967" stop="73671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74667" g_stop="73967" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E354154" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74667" e_stop="73967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTAT</genome_strand>
        <mrna_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAAT-AATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAG-TTATATAAAAATATGTGTTATGTGTTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252250" ref_strand="+" ref_description="SGN-E252250 [cLEG-12-E4]">
      <seq>tttttttttaaaacacataacacatatttttatataaactgaaaaaagaaacttagagacaagcaactcacatacacacatggacacatacacaagacatcaagtgcagttccagaagggagaaagtaagagtacagtatcaactttcaacctacaacctcccctcaatttattcccaacagacactaaagcaaaagttgaacacaagacaacataaaatgcacttaaaactcttgacaaaactctagtctccccaccattgatgagcaaacacaccacttctccttagagttttgaaaaggctcatgcagtctccacaaagagcatttctgcaatctgcagcggagcagcgaaagaacagctcatcgacgtggcatattgatccagtttggaatagttctgctagaatgtttagctctggtgctctagcattcatcatgaggatgacatagtctccgtctttaactgtttcactaaaccaatgaatgaagtcgaatccttcatgatctagtggtgcacccaaatattcgtcagtgtcaacagatgacaaagtagtctctccggcgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="73671" stop="74836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73967" g_stop="74536" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E252250" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73967" e_stop="74536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTTCTTAAAACACATAACACATATTTTTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAG</genome_strand>
        <mrna_strand>TTTTTTTTTAAAACACATAACACATATTTTTATATAAACTGAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGAGTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAAGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272203" ref_strand="-" ref_description="SGN-E272203 [cLEM-19-G1]">
      <seq>ctttgtcatctgttgacactgacgaatatttgggtgccccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcaaaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttttgagtttaaataaaaatatgtgttatgtgttttaagaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74818" stop="73668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74518" g_stop="73969" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="568"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E272203" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272203" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74518" e_stop="73969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACT</genome_strand>
        <mrna_strand>CTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCCCCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAAAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTAAATAAAAATATGTGTTATGTGTTTTAAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591707" ref_strand="+" ref_description="SGN-E591707 [45425]">
      <seq>cttgttcaatgttttcgtcattgatcataacacctccgcactgtctttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagaggctactttgccatttgttgacactgacgaatatttgggtgcaccgctagatcatgaaggatttgacttcattcgttggtttagtgaaacagttaaagacggagactatgtcgtcctcatgatgaatgctagggcagcagagctaaatattctagcagaactattcaaaactggatcaatatgccatgtcgatgagctgttccttcgctgctcggctgtagactgcaaaaatgctctttgtggggactgcatgaaccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagtttgatgcattttatgtcgtcttttcttcaacttttgctttagtgtctgttgggaataaatagaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgcatgcgagttgcttgtctgtaagtttctctttaagtttatggaacgacatatgtgttatgtgttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74931" stop="73674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74631" g_stop="73974" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E591707" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74631" e_stop="73974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAA--AAATATGTGTTATGTGTTTTAA</genome_strand>
        <mrna_strand>CTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCGCACTGTCTTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGGCTACTTTGCCATTTGTTGACACTGACGAATATTTGGGTGCACCGCTAGATCATGAAGGATTTGACTTCATTCGTTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCGTCCTCATGATGAATGCTAGGGCAGCAGAGCTAAATATTCTAGCAGAACTATTCAAAACTGGATCAATATGCCATGTCGATGAGCTGTTCCTTCGCTGCTCGGCTGTAGACTGCAAAAATGCTCTTTGTGGGGACTGCATGAACCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAG-TTTGA-TGCATTTTATGTCGTCTTTTCTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATAGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGCATGCGAGTTGCTTGTCTGTAAGTTTC-TCTTTAAGTTTATGGAACGACATATGTGTTATGTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619452" ref_strand="+" ref_description="SGN-E619452 [70141]">
      <seq>cttcaacttttgctttagtgtctgttgggaataaatagaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgcatgcgagttgcttgtctgtaagtttctctttaagtttatggaagaaatatgtgttatgtgttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74468" stop="73671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74169" g_stop="73974" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="197" polyA_stop="210"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E619452" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74169" e_stop="73974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAA-AAATATGTGTTATGTGTTTTAA</genome_strand>
        <mrna_strand>CTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATAGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGCATGCGAGTTGCTTGTCTGTAAGTTTC-TCTTTAAGTTTATGGAAGAAATATGTGTTATGTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266061" ref_strand="+" ref_description="SGN-E266061 [cLEI-6-M15]">
      <seq>ttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacctttgctttagtgtctgttgggaataaattgaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaactgcacttgatgtcttgtgtatgtgtccatgtgtgtatgtgagttgcttgtctctaagtttcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74930" stop="73709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74630" g_stop="74009" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E266061" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74630" e_stop="74009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTT</genome_strand>
        <mrna_strand>TTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACCTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350493" ref_strand="+" ref_description="SGN-E350493 [cTOS-5-I1]">
      <seq>aagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagttttaagtgcattttatgttgtcttgtgttcaacttttgctttaatgtctgttgggaataaattgaagggaggttgtaagttgaaagttgatactggaatcttactttctcccttctggaactgcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74967" stop="73765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74667" g_stop="74065" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E350493" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74667" e_stop="74065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGAT</genome_strand>
        <mrna_strand>AAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAATGTCTGTTGGGAATAAATTGAAGGGAGGTTGTAAGTTGAAAGTTGATACTGGAATCTTACTTTCTCCCTTCTGGAACTGCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487173" ref_strand="+" ref_description="SGN-E487173 [cSTE-24-O14]">
      <seq>acttgcccaagttcatgaacatctcatcaaggaacaaactggtgtatatcaacgttggtgcaggggaatttgtagaatcaactcttgcaagaacattcaagcctcattatccgatccctcaccacttgttcaatgttttcgtcattgatcataacacctccgcactgtctttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagaggctactttgccatttgttgacactgacgaatatttgggtgcaccgctagatcatgaaggattcgacttcattcgttggtttagtgaaacagttgaagacggagactatgtcgtcctcatgatgaatgctagagcagcagagctaaatattctagcagaactattcaaaactggatcaatatgccatgttgatgagctgttccttcgctgctcggctgtagactgcaaaaatgctctttgtggggactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagtttggtgcattttatgtcgtcttttcttcaacttttgcttttattgtctgttgggaataaatagaggggaggttgtaggttgaaagttgatactgtaatcttactttctcccttctggaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75055" stop="73774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74755" g_stop="74074" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E487173" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74755" e_stop="74074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCCCAAGTTCATGAACATCTCATCTAGGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGC-TTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACT</genome_strand>
        <mrna_strand>ACTTGCCCAAGTTCATGAACATCTCATCAAGGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTTGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCGATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCGCACTGTCTTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGGCTACTTTGCCATTTGTTGACACTGACGAATATTTGGGTGCACCGCTAGATCATGAAGGATTCGACTTCATTCGTTGGTTTAGTGAAACAGTTGAAGACGGAGACTATGTCGTCCTCATGATGAATGCTAGAGCAGCAGAGCTAAATATTCTAGCAGAACTATTCAAAACTGGATCAATATGCCATGTTGATGAGCTGTTCCTTCGCTGCTCGGCTGTAGACTGCAAAAATGCTCTTTGTGGGGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAG-TTT-GGTGCATTTTATGTCGTCTTTTCTTCAACTTTTGCTTTTATTGTCTGTTGGGAATAAATAGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479835" ref_strand="+" ref_description="SGN-E479835 [cSTD-11-F17]">
      <seq>gattgttgaatctctcgtgcatttctgtgctgcctgctaattgtccttccaatgtgaacaacaagccgtacttgaagcaccttgagccactcatggaaaagaagcttggacagtttgagacacagatctcatacttgcccaagttcatgaacatctcatcaagggaacaaactggtgtatatcaacgttggtgcaggggaatttgtagaatcaactcttgcaagaacattcaagcctcattatccgatccctcaccacttgttcaatgttttcgtcattgatcataacacctccgcactgtctttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagaggctactttgccatttgttgacactgacgaatatttgggtgcaccgctagatcatgaaggattcgacttcattcgttggtttagtgaaacagttgaagacggagactatgtcgtcctcatgatgaatgctagagcagcagagctaaatattctagcagaactattcaaaactggatcaatatgccatgttgatgagctgttccttcgctgctcggctgtagactgcaaaaatgctctttgtggggactgcatgagccttttcaaaactctaggagaagtggtgtgtttgctcatcaatggtggggagactagagttttgtcaagagtttggtgcattttatgtcgtcttttcttcacttttgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75164" stop="73894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74886" g_stop="74152" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E479835" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74886" e_stop="74152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTCAATCTCTCGTGCA-CTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTA-GGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAG</genome_strand>
        <mrna_strand>GATTGTTGAATCTCTCGTGCATTTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCATGGAAAAGAAGCTTGGACAGTTTGAGACACAGATCTCATACTTGCCCAAGTTCATGAACATCTCATCAAGGGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTTGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCGATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCGCACTGTCTTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGGCTACTTTGCCATTTGTTGACACTGACGAATATTTGGGTGCACCGCTAGATCATGAAGGATTCGACTTCATTCGTTGGTTTAGTGAAACAGTTGAAGACGGAGACTATGTCGTCCTCATGATGAATGCTAGAGCAGCAGAGCTAAATATTCTAGCAGAACTATTCAAAACTGGATCAATATGCCATGTTGATGAGCTGTTCCTTCGCTGCTCGGCTGTAGACTGCAAAAATGCTCTTTGTGGGGACTGCATGAGCCTTTTCAAAACTCT-AGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAG-TTT-GGTGCATTTTATGTCGTCTTTTCTTC-ACTTTTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235652" ref_strand="+" ref_description="SGN-E235652 [cLED-15-C18]">
      <seq>atatcaacgttggtgcaggggaattcgtagaatcaactcttgcaagaacattcaagcctcattatccaatccctcaccacttgttcaatgttttcgtcattgatcataacacctccacactgtccttatatgtgaagaatcctggtattaactttgtgtaccatccaggacttgctgtcgccggagagactactttgtcatctgttgacactgacgaatatttgggtgcaccactagatcatgaaggattcgacttcattcattggtttagtgaaacagttaaagacggagactatgtcatcctcatgatgaatgctagagcaccagagctaaacattctagcagaactattccaaactggatcaatatgccacgtcgatgagctgttccttcgctgctccgctgcagattgcagaaatgctctttgtggagactgcatgagccttttcaaaactctaaggagaagtggtgtgtttgctcatcaatggtggggagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75010" stop="73913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74710" g_stop="74213" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E235652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74710" e_stop="74213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACT</genome_strand>
        <mrna_strand>ATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425772" ref_strand="-" ref_description="SGN-E425772 [STM-45-F17]">
      <seq>catgcagtccccacaaaagagcatttttgcagtctacagccgagcagcgaaggaacagctcatcaaacatgccatattgatccagttttgaatagttctgctagaatatttagctctgctgctctagcattcatcaggaggacgacatagtctccatcttcaactgtttcactaaaccaacgaatgaagtcgaatccttcatgatctagcggtgcacccaaatattcgtcagtgtcaacaaatggcaaagtagcctctccggtgacagcgagtcctggatgatacacaaagttaataccaggattcttcacatataaagacagtgcggaggtgttatgatcaatgacgaaaacattgaacaagtggtgaggtatcggataatgaggcttgaatgttcatgaacttgggcaagtatgagatttgtgtctcaaactgtccaagcttcttttccacaagtggctcaaggtgcttcaagtacggcttgttgttcacattggaaggacaattagcaggcagcacagaatgcacgagagattcaacaatctctgatcgtttcttgaacatcactagagtatacgtgccaaccccacatacgtgcacaacatcagaactcttcaagaacaacgaaactggggtggcagaccttatcaagttgccttttatcaagttacccgcgtagaaactactagaacccacgagcataacaccagtgccccctggacgtaagacacgctcaatctcaagcaccataagagctggaacagtaacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="73971" stop="75414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74271" g_stop="74659" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74660" i_stop="74733" i_length="74">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74734" g_stop="75114" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="772" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E425772" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425772" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74271" e_stop="74659"/>
          <exon e_start="74734" e_stop="75114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCAGTCTCCAC-AAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATC-GACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACAGTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATGAGGCTTGAATGTTCTTGCAAGAGTTGATTCTACGAATTCCCCTGCACCAACGTTGATATACACCAGTTTGTTCCTAGATGAGATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACGAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAGTGCACGAGAGATTGAACAATCTCTGATCTTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACGACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTACCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCGGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGTACAGTGACCTTA</genome_strand>
        <mrna_strand>CATGCAGTCCCCACAAAAGAGCATTTTTGCAGTCTACAGCCGAGCAGCGAAGGAACAGCTCATCAAACATGCCATATTGATCCAGTTTTGAATAGTTCTGCTAGAATATTTAGCTCTGCTGCTCTAGCATTCATCAGGAGGACGACATAGTCTCCATCTTCAACTGTTTCACTAAACCAACGAATGAAGTCGAATCCTTCATGATCTAGCGGTGCACCCAAATATTCGTCAGTGTCAACAAATGGCAAAGTAGCCTCTCCGGTGACAGCGAGTCCTGGATGATACACAAAGTTAATACCAGGATTCTTCACATATAAAGACAGTGCGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGTATCGGATAATGAGGCTTGA..........................................................................ATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACAAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAATGCACGAGAGATTCAACAATCTCTGATCGTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACAACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTATCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCAGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGAACAGTAACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455333" ref_strand="-" ref_description="SGN-E455333 [cSTS-26-A23]">
      <seq>agaatatttagctctgctgctctagcattcatcaggaggacgacatagtctccatcttcaactgtttcactaaaccaacgaatgaagtcgaatccttcatgatctagcggtgcacccaaatattcgtcagtgtcaacaaatggcaaagtagcctctccggtgacagcgagtcctggatgatacacaaagttaataccaggattcttcacatataaagacagtgcggaggtgttatgatcaatgacgaaaacattgaacaagtggtgaggtatcggataatgaggcttgaatgttcatgaacttgggcaagtatgagatttgtgtctcaaactgtccaagcttcttttccacaagtggctcaaggtgcttcaagtacggcttgttgttcacattggaaggacaattagcaggcagcacagaatgcacgagagattcaacaatctctgatcgtttcttgaacatcactagagtatacgtgccaaccccacatacgtgcacaacatcagaactcttcaagaacaacgaaactggggtggcagaccttatcaagttgccttttatcaagttacccgcgtagaaactactagaacccacgagcataacaccagtgccccctggacgtaagacacgctcaatctcaagcaccataagagctggaacagtaacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="74071" stop="75414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74371" g_stop="74659" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74660" i_stop="74733" i_length="74">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74734" g_stop="75114" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="670" r_length="381" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E455333" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455333" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74371" e_stop="74659"/>
          <exon e_start="74734" e_stop="75114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACAGTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATGAGGCTTGAATGTTCTTGCAAGAGTTGATTCTACGAATTCCCCTGCACCAACGTTGATATACACCAGTTTGTTCCTAGATGAGATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACGAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAGTGCACGAGAGATTGAACAATCTCTGATCTTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACGACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTACCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCGGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGTACAGTGACCTTA</genome_strand>
        <mrna_strand>AGAATATTTAGCTCTGCTGCTCTAGCATTCATCAGGAGGACGACATAGTCTCCATCTTCAACTGTTTCACTAAACCAACGAATGAAGTCGAATCCTTCATGATCTAGCGGTGCACCCAAATATTCGTCAGTGTCAACAAATGGCAAAGTAGCCTCTCCGGTGACAGCGAGTCCTGGATGATACACAAAGTTAATACCAGGATTCTTCACATATAAAGACAGTGCGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGTATCGGATAATGAGGCTTGA..........................................................................ATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACAAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAATGCACGAGAGATTCAACAATCTCTGATCGTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACAACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTATCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCAGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGAACAGTAACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707809" ref_strand="+" ref_description="SGN-E707809 [FA34AB07]">
      <seq>ctttgattgtgaaagggttcttgtttgttactgttatgattcttgtgtcatttgttcaaatgacacatatgattcagaaatctgaacctataatgttgaattttggtgtatgccctttgaactttgggtctaatgagtatatgaatgtgaccgggttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaaagatcagagattgttcaatctctcgtgcactctgtgctgcctgctaattgtccttccaatgtgaacaacaagccgtacttgaagcaccttgagccactcgtggaaaagaagcttggacagtttgagacacaaatctcatacttgcccaagttcatgaacatctcatctangaacaaactggtgtatatcaacgttggtgcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75876" stop="74392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75577" g_stop="74692" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="886" r_length="886" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E707809" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75577" e_stop="74692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTAGGAACAAACTGGTGTATATCAACGTTGGTGCAGG</genome_strand>
        <mrna_strand>CTTTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTANGAACAAACTGGTGTATATCAACGTTGGTGCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481559" ref_strand="+" ref_description="SGN-E481559 [cSTD-18-J17]">
      <seq>cgtctttgatgaagcgcgacgatgaaaaattgaccaagaatgtgtttaaggagctaatggaaaataatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgttgtatgcagctttggtgctgcgagaactgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtatgagcttgatcatgagaataattctttcgattttgtgttctcaagggatcttgataaggttactgttccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcactggtgttatgctcgtgggttctagtagtttctacgcaggtaacttgataaaaggcaacttgataaggtctgccaccccagtttcgttgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaacgatcagagattgttgaatctctcgtgcattctgtgctgcctgctaattgtccttccaatgtgaacaacaagccgtacttgaagcaccttgagccactcgtggaaaagaagcttggacagtttgagacacagatctcatacttgccccagttcatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75679" stop="74435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75379" g_stop="74735" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E481559" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75379" e_stop="74735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACA</genome_strand>
        <mrna_strand>CGTCTTTGATGAAGCGCGACGATGAAAAATTGACCAAGAATGTGTTTAAGGAGCTAATGGAAAATAATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTTGTATGCAGCTTTGGTGCTGCGAGAACTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTATGAGCTTGATCATGAGAATAATTCTTTCGATTTTGTGTTCTCAAGGGATCTTGATAAGGTTACTGTTCCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACTGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCAGGTAACTTGATAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTTGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAACGATCAGAGATTGTTGAATCTCTCGTGCATTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAGATCTCATACTTGCCCCAGTTCATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425250" ref_strand="+" ref_description="SGN-E425250 [STM-44-F12]">
      <seq>tgaaagggttcttgtttgttactgttatgattgttgtgtcatttgttcaaatgacacatatgattcagaaatctgaacctataatgttgaattttggtgtatgccctttgaactttgggtctaatgagtatatgaatgtgaccgggttctttaaacccgtttatggattgaggattccactgtttggggcgtctttgatgaagcgcgacgatgaaaaattgaccaagaatgtgtttaaggagctaatggaaaataatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgttgtatgcagctttggtgctgcgagaactgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtatgagcttgatcatgagaataattctttcgattttgtgttctcaagggatcttgataaggttactgttccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcactggtgttatgctcgtgggttctagtagtttctacgcaggtaacttgataaaaggcaacttgataaggtctgccaccccagtttcgttgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaacgatcagagattgttgaatctctcgtgcattctgtgctgcctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75868" stop="74549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75568" g_stop="74849" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E425250" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75568" e_stop="74849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTA</genome_strand>
        <mrna_strand>TGAAAGGGTTCTTGTTTGTTACTGTTATGATTGTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCTTTAAACCCGTTTATGGATTGAGGATTCCACTGTTTGGGGCGTCTTTGATGAAGCGCGACGATGAAAAATTGACCAAGAATGTGTTTAAGGAGCTAATGGAAAATAATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTTGTATGCAGCTTTGGTGCTGCGAGAACTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTATGAGCTTGATCATGAGAATAATTCTTTCGATTTTGTGTTCTCAAGGGATCTTGATAAGGTTACTGTTCCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACTGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCAGGTAACTTGATAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTTGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAACGATCAGAGATTGTTGAATCTCTCGTGCATTCTGTGCTGCCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304730" ref_strand="+" ref_description="SGN-E304730 [cLEX-11-B4]">
      <seq>tggtgctgacagaattgggactcttgagtgctggtggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttgaagagttctgatgttgtgcacgtatgtggggttggcacgtatactctagtgatgttcaagaaaagatcagagattgttcaatctctcgtgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75553" stop="74563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75253" g_stop="74863" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E304730" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75253" e_stop="74863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTC</genome_strand>
        <mrna_strand>TGGTGCTGACAGAATTGGGACTCTTGAGTGCTGGTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480156" ref_strand="+" ref_description="SGN-E480156 [cSTD-12-N8]">
      <seq>gccgggttctttaaacccgtttatggattggggattccgctgtttggggcgtctttaatgaagcgcgacgatgaaaaattgaccaagaatgtgtttaaggagctaatggaaaagaatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgttgtatgcagctttggtgctgcgagaactgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtatgagctcgatcatgataataattctttcgattttgtgttctcgagggatcttgataaggttactgttccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcactggtgttatgctcgtgggttctagtagtttctacgcgggtaacttgataaaaggcaacttgataaggtctgccaccccagtttcgttgttcttgaagagttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75727" stop="74645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75428" g_stop="74945" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E480156" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75428" e_stop="74945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATG</genome_strand>
        <mrna_strand>GCCGGGTTCTTTAAACCCGTTTATGGATTGGGGATTCCGCTGTTTGGGGCGTCTTTAATGAAGCGCGACGATGAAAAATTGACCAAGAATGTGTTTAAGGAGCTAATGGAAAAGAATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTTGTATGCAGCTTTGGTGCTGCGAGAACTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTATGAGCTCGATCATGATAATAATTCTTTCGATTTTGTGTTCTCGAGGGATCTTGATAAGGTTACTGTTCCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACTGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGATAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTTGTTCTTGAAGAGTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330877" ref_strand="+" ref_description="SGN-E330877 [cTOD-10-F4]">
      <seq>ttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggataaggtcactgtaccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcaccggtgttatgctcgtgggttctagtagtttctacgcgggtaacttggtaaaaggcaacttgataaggtctgccaccccagtttcgtcgttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75722" stop="74657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75422" g_stop="74957" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E330877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75422" e_stop="74957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGA</genome_strand>
        <mrna_strand>TTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454243" ref_strand="+" ref_description="SGN-E454243 [cSTS-22-L9]">
      <seq>tgaaagggttcttgtttgttactgttatgattgttgtgtcatttgttcaaatgacacatatgattcagaaatctgaacctataatgttgaattttggtgtatgccctttgaactttgggtctaatgagtatatgaatgtgaccgggttctttaaacccgtttatggattgaggattccactgtttggggcgtctttgatgaagcgcgacgatgaaaaattgaccaagaatgtgtttaaggagctaatggaaaataatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgttgtatgcagctttggtgctgcgagaactgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtatgagcttgatcatgagaataattctttcgattntgtgttctcaagggatcttgataaggttactgttccagctcttatggtgcttgagattgagcgtgtcttacgtccagggggcactggtgttatgctcgtgggttctagtagtttctacgcaggtaacttgataaaaggcaacttgataaggtctgccacccagtttcgttgttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75868" stop="74658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75568" g_stop="74958" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E454243" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75568" e_stop="74958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTG</genome_strand>
        <mrna_strand>TGAAAGGGTTCTTGTTTGTTACTGTTATGATTGTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCTTTAAACCCGTTTATGGATTGAGGATTCCACTGTTTGGGGCGTCTTTGATGAAGCGCGACGATGAAAAATTGACCAAGAATGTGTTTAAGGAGCTAATGGAAAATAATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTTGTATGCAGCTTTGGTGCTGCGAGAACTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTATGAGCTTGATCATGAGAATAATTCTTTCGATTNTGTGTTCTCAAGGGATCTTGATAAGGTTACTGTTCCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACTGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCAGGTAACTTGATAAAAGGCAACTTGATAAGGTCTGCCA-CCCAGTTTCGTTGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334880" ref_strand="+" ref_description="SGN-E334880 [cTOE-3-B4]">
      <seq>ttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcgattttgtgttctcgagggatctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75718" stop="74813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75418" g_stop="75113" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E334880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75418" e_stop="75113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATA</genome_strand>
        <mrna_strand>TTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337968" ref_strand="+" ref_description="SGN-E337968 [cTOE-14-I3]">
      <seq>ggttcgttaaacctgtttctggattggggatttcgctgtttggagcttctttgatgaagcgggacgacgaaaaattgaccaaggatgtgtttaaggagctaatggaaaaggatttcttggatttgaatgctaatgcattgtgtgttgggaagaaatcgtcgtttgcagctttggtgctgcgagaattgggactcttgagtgctgttggtgttgatgcacacccgtatttctctcttgtatggagaagatttatgtacgagctcgatcatgagaacaattctttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="-" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="75724" stop="74839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75424" g_stop="75139" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="-" ref_id="SGN-E337968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75424" e_stop="75139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGA</genome_strand>
        <mrna_strand>GGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366376" ref_strand="+" ref_description="SGN-E366376 [cLPT-1-M7]">
      <seq>gacgacggggagaaggcagaggataaagaagagaagcgcaatgacgttatgatgactgaggcgttagacgatgacgaatgttcttcggtttctgggttgtcaaaatgcttggtgaaccttcccatgaagtggagttcagataatttaaggtgtttcctcaaagaacatggtgttacttttaaatcagcaaaaaagaagaaaggcatggctgtaggatttgctacttttgaaaatgcagaacaagtgaaaactgctgtgaaggagttggatggaaagcctgctggcaacaagattttaaaggttggagatattattccgcgggcatttgagagaaaaggtaattcggcaatgtcctcatttcacaacaatcaacaaggtgaaaagcaaaccgaaactggagacggtttggatttgactaaaaaatcagaggaaagtgaggctgaggacccagtgaccagtgattcagttctgaagggtaggtgtgttcgggatgtggtgactcctcttgctaaaatgccatatgctgatcaactggagcagaagaagagctctttgacgcgaactctcaaaacacttactcgaaatgcacgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="79251" stop="82255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79551" g_stop="79718" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79719" i_stop="81329" i_length="1611">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81330" g_stop="81422" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="261" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81423" i_stop="81509" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81510" g_stop="81824" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="576" r_length="315" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81825" i_stop="81935" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81936" g_stop="81955" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="596" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E366376" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79551" e_stop="79718"/>
          <exon e_start="81330" e_stop="81422"/>
          <exon e_start="81510" e_stop="81824"/>
          <exon e_start="81936" e_stop="81955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGTGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACATGTAAGTTGTTTGCTCAAAGATGAATTTTTTTTAGATATTAAACATGTACGTCCAATTCATTTGGTGTTTATTTTCTGATCTTCTTATTATAAGGATATGGAAGTCGAGGACTAAGATAGAAGGTTATTAGATAGTTGAGCTTTGATTAGTTTTCTTATGAGTATTGTTATAATCACTTCCATACTAGCATACGACTTCAGTATTGGGTGTTGTTTCCTTTGCTTCAAAAATCATATTTTTTTTTGTTGCTTCTGTTCTCTTCTACATTGTAGTTAGTATGACTTCTTCACTACAGTATTTGTTTTACATACTTGATTTTTGATATGCCTTACTTGAGCTGAGTGTCTATAAGAGTTACCGCTCTACCTTCACAAGGTAGATAGTGGTTAGGCTGTGTACACATCACCCTCTCCGGACTCCACTTCTGGATTAACATGGGGTATGTTGTTGTTTTGTTATGGTGTATTTTGTGTTTTCTCTTTCAGATACTGGCAATTCCCAGTTTTGAGTAGTGGAAAACCAATAACTGTTGTTATTAAGCTACAGTAAAAAAATTGGGTTGAAGTTTTAGTTCTCACTAATTACGATTTGGAAGCGAATTTCACATATGTGAACTTTGTTAACTCTTGTCTGTTTTTGTCAATTAGACACTAATGGATGCCAATGCATTTATTTTGTGGTGAATAAGATTATGGGAATTCATCAACCAGAAGATTAGTTGTTGGAAACTATAAATAGTCTGAAAGCACTATGCCAAAAGTGTAACGTCAACAATTTGGTCTCTTTCTGATGAAAGGATCATTTTTAATTTTCTGCAAAGTGCAAACCTTTATCCGCTGGGAATACTCTGGTCGAATGAACTTCCAATGGTTCCATTTTTCTTTCCGATCTAGAAGAGTATAGGAAACATTTTAAACATTCCATGGCCTTTTATTCTTATTGTATAATTTATTACAAAATCCTGTGAAATCCTAGTATATTTGGGTTGTACTGAAAATTAAGTGAAAAGATCCACAGGGAGGTGTAAACAGTCAGTATCTTGGAAAGGTTGTAAATTGGAGGGTGGTGGGATCTTTAGGTGCTTTTCCCTTGGTTTTCAGTTAAAGGTTGATGATGAAACAATTATCTGTTTTTTTTTTTTTTAAGTAAAAAATAATCTTGGTGTTTGGGCTAGTTTGTGTGCAACTCCGCTAATTTCATGGGGTAGCTGATTCCCACCAGTATATGTACCAGGTAATTTTGTTCACCAAGGTTAAGACAGTAGGAAGAAACACCTAGTGTTTTTGTCTTCCCTAGGATTTTAACTCGAGACCTCATGGTTCTCAATCCACCTTATTAACACTAGACTGCACCCTTTTATGCTTGAATTCGTTGTTTGTTTAAATAAGGGTTTAATTTTGTAGACTATTTGCGGTAACACTGTAAGCATCTGTAGAAGTACGGATCTTTGCTCTATGGCTGGACAAGTCTGCTCTCCTGGAAATCAGAATTCTGTTTCCCAGAGAACATAATCCTTACTCATATCTTTTGATGTATTGTAATAGTGTTCTTCATCGATTCTTTTTATGACGCAAATGAGATGTTTGTTGGAGTTGACTCCTTAAATCTCAGGGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAGGTACTCCTTTGTTGTCTTAATTTTGATTAGAGAGATATGCAGTTATTCTATTATCAGAAACTTTATTTGTCAACTTTAACTATGCAGGAATTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCGCACCAATCAACAAGGTGAAAAGCAAACCGAAGCTGGAGACGGTTTGGATTTGACTAAAATATCAGAGGAAACTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTTAAAACACTTGTTAGTATATCTTATCTCCTTATTCCATATTGTTATAATGTCACTTGCCACTTTCAAACAGGGATAGCAAAAATAGACTTTTGACCCTTTTTTCATCTTCTATATGCATAGACTCGAAATGCACGTAAAGC</genome_strand>
        <mrna_strand>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGCGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAG.......................................................................................GAGTTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCACAACAATCAACAAGGTGAAAAGCAAACCGAAACTGGAGACGGTTTGGATTTGACTAAAAAATCAGAGGAAAGTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTCAAAACACTT...............................................................................................................ACTCGAAATGCACGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610669" ref_strand="+" ref_description="SGN-E610669 [57835]">
      <seq>tgcataagttaatgatgaacttcaaggtcctggccaaagtcgtttgctatgggagcttctagcgcatcaccaacattacctcttacggccctggtagttcaggatcacactggtatatcaaatgtagcaccagcagatgctcctctgcgtgtgcttccatttcccagaggggaaaactattctgaactgcatgcagataatgcagttgctgaattcaaaaattcacgattttattaatggacttaagttttgtatttcgcccacggccttctttcaggtgaacacccttgctgcagagaagttgtactcccttgcaggggactgggccagcttgggtcctgataccttgctttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcatcgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggcaaaggcagagaatgtcatgggatctgtactgaaagaatatcttgcttcacctccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="84599" stop="89136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84899" g_stop="84998" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84999" i_stop="85358" i_length="360">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85359" g_stop="85532" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="277" r_length="175" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="412" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="509" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88784" g_stop="88836" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="562" r_length="53" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E610669" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84899" e_stop="84998"/>
          <exon e_start="85359" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="88836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTAGTCAATGATGAACTTCAAGGT-TTGGCCAAAG-CATTTGCTATGGGAGCTTCTAGTGCATCACCAACATTACCTCTTACTGCCCTGGTAGTTCAGGTGGTTGTCATACAAATTTTCTCTCTTTATTATTGTACACTCCTATTTCCAATTTTCTCAATTTATGATGACAGCGGGGTGAAGCTTTGGTTAATTCTAAAAATCTGGTACTTGTTTCTCACTAATATATATAAGCAAAACAGCTTGCTCAAAAGTGGAAATAAGCCATGGATCTTGGGAGTTATAAAAACTATCTTTATCCTTGTCTTAAATCTTTTATTTATACCTGTTTCCTTGCTTCATAGAATATTCTTGTTTTTGACCTTTTCAAGATGCTAGCTTTTTCATACTAGTGAGTTATGTACATGTTCTTCCAGTGGAGCCTTTAACCAACCTTGATGCTGTTACTTTTTGATGCAGGATCACACTGGAATATCAAATGTAGCACCAGCAGATGCTCCTCTGCGTGTACTTCCATTTTCCAGAGAGGAAAGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAA-GCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGG-AAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAA</genome_strand>
        <mrna_strand>TGCATAAGTTAATGATGAACTTCAAGGTCCTGGCCAAAGTCGTTTGCTATGGGAGCTTCTAGCGCATCACCAACATTACCTCTTACGGCCCTGGTAGTTCAG........................................................................................................................................................................................................................................................................................................................................................................GATCACACTGGTATATCAAATGTAGCACCAGCAGATGCTCCTCTGCGTGTGCTTCCATTTCCCAGAGGGGAAAACTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAATTCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCCACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTGTACTCCCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTGCTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATCGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577235" ref_strand="+" ref_description="SGN-E577235 [33951]">
      <seq>cccagaggggaaaactattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgcccacggccttctttcaggtgaacacccttggctgcagagaagttgtactcccttgcaggggactgggccagcttgggtcctgataccttgctttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcatcgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagagaatgtcatgggatctgtactgaaagaatatcttgcttcacctccgaaagtagacggacttctagatataaaagaaaagaaaaaccaagaaaatactacttccacagagaagactgattctatagttaacgcatcggaaacagatggggaatcgggtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatacaacacctactgagaatatgaattctacggatggcgccgctgaacctgaggggaaaacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85120" stop="89350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85419" g_stop="85532" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="250" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="346" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88784" g_stop="89050" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="613" r_length="267" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E577235" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85419" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="89050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGAGGAAAGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTT-GCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGC</genome_strand>
        <mrna_strand>CCCAGAGGGGAAAACTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCCACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGGCTGCAGAGAAGTTGTACTCCCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTGCTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATCGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTCCGAAAGTAGACGGACTTCTAGATATAAAAGAAAAGAAAAACCAAGAAAATACTACTTCCACAGAGAAGACTGATTCTATAGTTAACGCATCGGAAACAGATGGGGAATCGGGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACAACACCTACTGAGAATATGAATTCTACGGATGGCGCCGCTGAACCTGAGGGGAAAACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273865" ref_strand="+" ref_description="SGN-E273865 [cLEN-7-E6]">
      <seq>agctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttttacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85131" stop="89252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85431" g_stop="85532" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="237" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="333" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88784" g_stop="88952" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="502" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E273865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85431" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="88952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGT</genome_strand>
        <mrna_strand>AGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTTTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273741" ref_strand="+" ref_description="SGN-E273741 [cLEN-7-E10]">
      <seq>ctattctgaactgcatgcagataatgcagttgctgaagcaaaaattcacgattttattaatggacttaagttttgtatttcgccgacggccttttttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattgggcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85133" stop="87244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85433" g_stop="85532" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="235" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86875" g_stop="86944" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="305" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E273741" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85433" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAA</genome_strand>
        <mrna_strand>CTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTTTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGGCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269514" ref_strand="+" ref_description="SGN-E269514 [cLEM-2-P6]">
      <seq>ttctttcaggtgaacacccttgctgcagagaagttatactctcttgcaggggactgggccagcttgggtcctgataccttactttttgacgtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttctacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatactacacctactgagaatatgtattctacggatagagccgctgaaccggaggaaaaaacaggccttgagtgtaccaatggtaaaagcttgtcagaatcttcagcagatgacactacagaaccagcaacccaacttaagaagtgttcatcagataatttgaccactccagtgcaacatttcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85341" stop="89474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85524" g_stop="85532" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85644" g_stop="85778" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="144" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="240" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88784" g_stop="89174" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="631" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E269514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85524" e_stop="85532"/>
          <exon e_start="85644" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="89174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAGGTGAGATCATTGCTTATTTTCTCTGTCCTAAGCTGATCCTATTCTTATCTCCCCCCGTCTCTACCTCTCTTGCAGAAGTTGTTTGTCTTTTAAGTTCTTCATTTGGCACAGGTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</genome_strand>
        <mrna_strand>TTCTTTCAG...............................................................................................................GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704944" ref_strand="+" ref_description="SGN-E704944 [FA25CH05]">
      <seq>gtttgctgtggaactggaacaattggtcttactctggcaaatcgagttggtatggttgttggcattgaaatgaatgcttctgctgtttctgatgctcaaagaaatgctgaaatcaatgggataaagaactgtagatttatttgtggaaaggcagaggatgtcatgggatctgtactgaaagaatatcttgcttcacctgcgaaagtagatggacttctagatatagaagaaaagaaaaaccaagaaaatactacttctacagagaagactgattctatagttaacgcatcgaaaacagatggggagtcaagtactgggtctgaaaatggtaaaagcatgtgcattgatcaagatactacacctactgagaatatgtattctacggatagagccgctgaaccggaggaaaaaacaggccttgagtgtaccaatggtaaaagcttgtcagaatcttcagcagatgacactacagaaccagcaacccaacttaagaagtgttcatcagataatttgaccactccagtgcaacatttcagcaatgttgttgcaattgtagatcctccacgtgctggacttcatcccactgttatcaaacttttacggactcactcacgtctaaggaggcttgtttacatttcctgtcaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaaaggggataataggaacaacagattatggaggacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="85425" stop="90395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85725" g_stop="85778" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86875" g_stop="86970" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="150" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813">
            <donor d_prob="0.752" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88784" g_stop="89218" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="585" r_length="435" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89219" i_stop="89822" i_length="604">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89823" g_stop="89866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="629" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114">
            <donor d_prob="0.273" d_score="0.95"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89981" g_stop="90095" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="745" r_length="116" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E704944" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85725" e_stop="85778"/>
          <exon e_start="86875" e_stop="86970"/>
          <exon e_start="88784" e_stop="89218"/>
          <exon e_start="89823" e_stop="89866"/>
          <exon e_start="89981" e_stop="90095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATGGTAATGTTCACCACTCTAATTAAATCTTAAATTTTTGTTTTGAATTTGTTTTACGTCACACAAGGTAGGGATAAGGTTTGCATACAATCCACTCTCCCCAGATCCCAATTTTACTTGTGAGATCAGCCTGGTTATGTTGTTGATGAAATTGTTTTGTGTCATGATGTCAACTTTTGGCCCACATATTCACTATATTTACTTTTACCCTATTTTTTAGTGTCTTTATCTGTAATGGTACACACTTGTTATAACTGCCGATCGTCTCCTTTTTGCTGAAGTAGCTATATAAAGTTGCCTATTACTGGTAAAAAACAAGTGTCCTACTTTGATTACTCCAGGAGTTTAAGAGCAATTCTATCATTCTATGTAAATTATTATGTTTAGTTAGGCAAATTAAGCATCAAATTTATGTGTCCCCAATTGAATGTCGTAGTTTGACCTTTTATATATATATATATATATATATATATATTAAGATAAAACTCGATAATGCAGATGTGTAATACAGGCTCATACATTTACTTTTTCATTCTGGAAAATGAAATAAGAGAAAGAGTTGTTTCTAACACTGTAAAGGTTTCATCAAAGGAAATTTTTTTCTTTATATGAAGTGAGTATAGTTTTTGGATGTTCCAAAATGGAAAACTGGATATAAATCCAATTTGTAGGAGTAACAGTTTAAAACTAAAAAATGGAAGTTTGGTTAAAAACAAATATATCAATCCAAATTCAAGAAATACAAGTTAGTAACAGTTTGCATTTGTTTGTATTTATTTGGGCACTCAGTAAAATTGGACGGATATATTTGTTTAATTGTTGCAGGGAGAAAAAAGATTCCAGTTTAAGGAAGTAGTCAAGCATTTGGATAGTCAAGAAGGAAAATGGGTTAAGCTTTTGAAACACGGGAGAATTTTTTTAGGGGTTCATAAGATAATAGAATATCGACAATGCTACCTCATTTTCTGTTACTGGCTTAGTATTTCAATTCTCATTTAAGAGTAGTGCGTCTTATTAAAAAGTAAAATCTATATGCACTTTGAATATGTTTGGATGTCTTGAGATGAGAAGAAGTTCTTCTAACCATCCATTTCTTCAGGTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAGGTCAGATTGGACTACCATCATTACTGGTGTTCTCACTTTTTCTCCCTCCTCTATTGTAATGTTGGCCTGTCCTCTGATCTTTGTCGTACTTGGTTTACGTATCTAGTCACTACCAGTGGATTTCGTTCACATTTTATTTTACTTGCTTTCGGTCATTGCCATGAAACTATGCAGTGATGATTTACTTTTGGGAAAATACAGAACGACAGACCCCCTTAAACTAGTCTTTGGTTTTTAAAAAGACAAACTTTGTGGGGGTCCTCCTAGGACTGAGGGTTCAGAAATTTTTCTTCTCAATTATGTGAAGTAAATTAACCCAAGGTTAAGCAAGGCGAACCTGAGTTTGATATGAGTTTTACCATGACTCCCCTATAGTTCCTGTGGGATTTCACTGGGTTTGGTGTTATTGTTGTCCCTATAGTTGTTCGAACTTTGAAGAGTACTAATACCCCCTTTTTGGCCTATGTGGCCATTTTTGGTGTTCCACACAACCGTTGAAGCGCGTGAAGATCTCCAAAATTAGTGTAATTTAGTGTTTCGTTCATAATTCTTTTGCATTTCTATTTTTTTTTAAAAAAAAAACACGGTGCCCGGGCCAGCTTGAGTGCATCTCGCCTAATTCCACATATACTTGCCAGACCTACCTACTACAACAAATACCAAATAACTCTGTCCACCGAGGCTAGAACAAATGAATAGAAATTTTCCTTTTTTCTCTTCTTCCATGAACCACTCCTCCACCTATCCTCCCACCAGTCTTGCACCAGCAAAACTCTGAACATACGCCCAACCAACTCCTGCTAGTACTAGTAGAGAGATGTTTGATAGAAGAAACAAAGGGGAGTAACTTGGGGGGGGGGGGGCGGTATCAATGGAAAAAGTTCTTTTGACCTGTGGCACTATGTCCCAGATATCTGGCTGTTTCGTCTCAGGATGGTATGGGTTCATTTTGAGCAGGTCCAGGCAAAGTTTTAAGTATCTTTTTAGAGATGACGTACTAGTTCTTTTTTTTTTGGTGGTGGGGGGGGGGGCTGTACACCTTATGTTTAGTAAACTAATAATTCATGCAGCTTTTTAAATCAGGTTGACTAAGTCATGTGGTTACTAAATTTAAGTACTGCTTTCAGCTTAGAGCATTAATCAGAAATGGCTATAGGTGGTGCATTTTGTGTTCCAAATTATACTTCTTGCTTCTATGTTGGGGCTTCAAGAATGTTGTCCTTAGTGAGTAACTCCTACATTCCCTGTTTGAGCCAATCTGATTAGACCTGATGTTTGGAGAAACTATAATGTTCCGATGTAGTCATTGTAATGTCGTGCTCAAGGCCAGAGAACTTTTACTGCTTTTGAGGAAATTGTAGAGGTTTGTTGTTTCAATAAAACAATATTATGATTTATGAGCCGCCTTTAGCTTCTTGCTGACCTAGCTATCTGGGAGATGATGTTACTAATCTAGCAGGAGATTCTAACAATCTAAAGTTTTCGTATAACTTCATTAAAGATGTACAAGACTTTTCTAGTTTAGGAAAAAGATATATCGGGTATTTTAAGTTGAGGAACCAAGTGTAAAAGCCTGATGAATCTGCCTTCACATTCTGAAGTATATTTGAACTTGGGTTGGAAAGCTATCTTACTTTTGGAACAACCTGTAGGTAAAGACTAGTTAGCTTTGTTCGGGAGCTCTGGCTTAGATTTCTGTGGAAACAATGACCTGGTTTATCTGTACTTTCCTTCTTTCTGTAGCATAGAGTATCTTTTGTATCCGAATTTGTTCTGCACATTTTAATTCCAAATTTGCATTATGAGATTGCAGGCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACTGTAAGTGATTTCTCTGCTTTCGTCCTTGTTTGTTATCTGGTTTAGTACTTTGTATGCTGGTGCTCTCTAATGTCTGATTGCTCTGTTAGCTACATCGTAAGGCATATGCAACTTGGGAAATCTTCCTTCTGGCGGCCATTGAGAAGATCTGCTTTCCATTTAGGACTCACTTGTTAGACGAGTTTAGTGTAATGTTATTATGACTTTTTATTGTTCAGATAACACCGGAGAATTTTGTATAACATTTCCTCAACTTCTAGTTGCTGCATGCATCAAGTTCTGCATGGAGGCCAGAATCTTGGTGTTACGAGTAAAAGATTACGCTGGAAATGGGAGGATATAGTGTAATAAACAGAAATTCGTGCCATATGTGGATGACAGAAAATTTGGTTCCTTATGATGCTGGTCACCAGTCTCTAAGCTATATGCACGGATGAAGAGTTCATCTTATCGTTGATCTAATCCCTGTTTTATCTGACCCTCAGGATAGATATTACAATGTGATTCCTACATTCTTTGTGCTACTATGTGCTTCCTACGTTTTTGAAATGTTGAGACTTGAAATGAGCTACTTTGTGCTAATTTTTGGTCTCTATGCTTGTAGGTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGT-AATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATG</genome_strand>
        <mrna_strand>GTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAGCAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACTTTTACGGACTCACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTCAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAAGGGGATAATAGGAACAACAGATTATGGAGGACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366377" ref_strand="+" ref_description="SGN-E366377 [cLPT-1-M7](-)">
      <seq>ctccagtgcaacatttcaagaatgttgttgcaattgtagatcctccacgtgctggacttcatcccactgttatcaaacttttaaggactaactcacgtctaaggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaagggggataataggaacaacagattatggaggaagatgagcagcgctactcttgcacgacataggaccaaatctatgcccaattcagagccttttaaacctgtcaaagccatggctgttgatctttttccacattctcctcattgtgaactggtgatgcttctggagaggtaaatttatctatttccttaagtgataatcttgagtagccatatttatgtgaggaaatagaaatgttcctttagatttgttctctcaatgtggaaaacaagggatgcgctttcgacaaacagttacttgatatctgttactgatggcagttttgagtcaatcttttactcgtggaagatttccataattttgttttgtaactttttccttattttattaccaatttccagtttcctgattccctgttcggaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="88851" stop="90783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89151" g_stop="89218" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89219" i_stop="89822" i_length="604">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89823" g_stop="89866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="112" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89981" g_stop="90486" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="618" r_length="506" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E366377" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89151" e_stop="89218"/>
          <exon e_start="89823" e_stop="89866"/>
          <exon e_start="89981" e_stop="90486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACTGTAAGTGATTTCTCTGCTTTCGTCCTTGTTTGTTATCTGGTTTAGTACTTTGTATGCTGGTGCTCTCTAATGTCTGATTGCTCTGTTAGCTACATCGTAAGGCATATGCAACTTGGGAAATCTTCCTTCTGGCGGCCATTGAGAAGATCTGCTTTCCATTTAGGACTCACTTGTTAGACGAGTTTAGTGTAATGTTATTATGACTTTTTATTGTTCAGATAACACCGGAGAATTTTGTATAACATTTCCTCAACTTCTAGTTGCTGCATGCATCAAGTTCTGCATGGAGGCCAGAATCTTGGTGTTACGAGTAAAAGATTACGCTGGAAATGGGAGGATATAGTGTAATAAACAGAAATTCGTGCCATATGTGGATGACAGAAAATTTGGTTCCTTATGATGCTGGTCACCAGTCTCTAAGCTATATGCACGGATGAAGAGTTCATCTTATCGTTGATCTAATCCCTGTTTTATCTGACCCTCAGGATAGATATTACAATGTGATTCCTACATTCTTTGTGCTACTATGTGCTTCCTACGTTTTTGAAATGTTGAGACTTGAAATGAGCTACTTTGTGCTAATTTTTGGTCTCTATGCTTGTAGGTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATAC</genome_strand>
        <mrna_strand>CTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTCTGGAGAGGTAAATTTATCTATTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTAGATTTGTTCTCTCAATGTGGAAAACAAGGGATGCGCTTTCGACAAACAGTTACTTGATATCTGTTACTGATGGCAGTTTTGAGTCAATCTTTTACTCGTGGAAGATTTCCATAATTTTGTTTTGTAACTTTTTCCTTATTTTATTACCAATTTCCAGTTTCCTGATTCCCTGTTCGGAAAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256140" ref_strand="-" ref_description="SGN-E256140 [cLEG-37-P2]">
      <seq>catcccactgttatcaaacttttaaggactaactcacgtctaaggaggcttgtttacatttcctgtaatcctgaaagcttggttgcaaacgctattgagctctgcacaccttctccagacgaatcggaaaagggggataataggaacaacagattatggaggaagatgagcagcgctactcttgcacgacataggaccaaatctatgcccaattcagagccttttaaacctgtcaaagccatggctgttgatctttttccacattctcctcattgtgaactggtgatgcttttggagaggtaaatttatctgtttccttaagtgataatcttgagtagccatatttatgtgaggaaatagaaatgttcctttatatttgttctctcaatgtggaaaacaagggatgtgctttcgacaaacagttactagatatctgttactgatggcagttttgaggcaatcttttactcgtggaagatttccataatattgttttgtaactttttccttattttattaccaacttccagttccctgattccctgttcgaaaagaatacctctaatattaatgacagattatgtttatgacctctcatctaatttaagatgctgtaacaatttcaagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="89523" stop="90860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89823" g_stop="89866" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="53" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89981" g_stop="90567" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="640" r_length="587" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E256140" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89823" e_stop="89866"/>
          <exon e_start="89981" e_stop="90567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGTGTAAGCTCCGTTATGCATTAACTTATCCCTTCTCCATTTCCTTGTTCGCTACTTTGACCTTTTCCACCGTTATTTATAGTCTAACTTTCGTTTATGTTGAACTGTTCTTTTCAGTTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</genome_strand>
        <mrna_strand>GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT..................................................................................................................TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331267" ref_strand="+" ref_description="SGN-E331267 [cTOD-6-J17]">
      <seq>ttttattatacaaagtaacaaacattctggttctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="97425" stop="99480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97725" g_stop="97998" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98896" g_stop="99180" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="559" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E331267" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97725" e_stop="97998"/>
          <exon e_start="98896" e_stop="99180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</genome_strand>
        <mrna_strand>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327559" ref_strand="+" ref_description="SGN-E327559 [cTOC-20-A14]">
      <seq>agagaactagtctctattttttttttaaaaaaaaaactcccattgcacctttttttttaaaaaaaaatcttttgttattttcactcttttcaagattttttcaaattttaagtaaacaaagtgtattattagtagattgtggaatatttggatcatgagtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaattcggatacagagaaggtaactgtcccggatacaggtccagctgctgcagttgtgccacaacaagagaaggtatccatttcaaggtcatggtcacttactaaaatgttcacgcctcgcatcaagaggacctcgtctttgcccgttacnacaatttcacattcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="97451" stop="99648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97744" g_stop="97998" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98896" g_stop="99348" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="706" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E327559" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97744" e_stop="97998"/>
          <exon e_start="98896" e_stop="99348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</genome_strand>
        <mrna_strand>AGAGAA-CTAG-TCTCTATTTTTTTTTTAAAAAAAAAACTCCCATTGCACCTTTTTTTTTAAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACNACAATTTCACATTCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308672" ref_strand="+" ref_description="SGN-E308672 [cLEZ-13-E21]">
      <seq>agtgaagaacataaggagaaaatcatggctgaggttgttgataatgatgaaaaaattggtgtttgtgaaaatgattttgtcatttcaacacctaagatcgagaggtcatccacgattactgaagaaacaacacatgctaaacattggaggaaaccaaacctatccttagacataccttcaagaacgttagacgcgtctcctcaagagttagttcagattaaaagaccattcacgcctacaccgaagagggtgaatttccttttgacacccagtacttgtgattcaagaataactacttcatcaccaggtccctccccgtgtcgtggaaaatcaaccattagaaatcttttccctaaactgagcttgaaatcacgtatgaattcggatacagagaaggtaactgtcccggatacaggtccagctgctgcagttgtgccacaacaagagaaggtatccatttcaaggtcatggtcacttactaaaatgttcacgcctcgcatcaagaggacctcgtctttgcccgttacaccaatttcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="97603" stop="99638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97903" g_stop="97998" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98896" g_stop="99338" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="539" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E308672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97903" e_stop="97998"/>
          <exon e_start="98896" e_stop="99338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAGGTGACTATGTTTTCTATTTGATTTGCTTTTTTTTTTTAATTCTTTTGTTTGTTGTTGTGCTTTTCATTTCTTGTTGTAACTGATTCATCTCAATTTTCTTCGTCGAAAAATTATACGGTATATTTACGTCAAACATTATTTTCTTATGTATATATAGTAGATATATCAACCTCAACTTGTATGAGACTGAGGCGTGATTGTTAGTTGTTGTTGTTAGAGGCGAATCTAGGATTTTAGCTCGATATATTTTTTTTGTTCTTAGTATTTAGTCTATTATATTTATTTACTATTTATTGAAAATTTAGTGGATTTTTACACAAATTTATACTTCATCGTGAAAAGTAATGAGTTCAGATGAATCTGTTGTATATATAGTAGATGTACCAACTCCGACTTATTTGAGACTGTCGGGGTATCTTTTGAATTCCCTTAGTGAAAATTCTGGCTCTGAAGCAGTGTTTGTCACATAGTCTTTTGTTTTCTTAATTTTGGTTGGTCTGATTAGAAGGAGAAATGAAAAGATAAGTTTATGAATCTTTTGTTGTTTTTGTGTACTTCTGTGTAACTGTTTTTTTTTTTTTTTAATCTTGGCTGTTTGTTTGTCTATTTGTAACTTGTTGTATGTAACTTTTTTGAAGGGGAACTTTAGAGCGCTACGTTAAAAGTTGTCTCTGTGTGACATATAGGTTACGAGTTTTGAGTGTAAAGACATGTTATTATGTTCTTATTCTAAATGTGGTTTAGGACTTGGGAGTGTTATGAATTTGTAGTGTAATTGGAGATGTTGATCAAGTTCTTGAAGTGAATTGCTTTGTGTTTCGACAAAATTAGGACCCCGAGTGCATTTCTTGATTTACTAGTTTACTGAACGAACTTGTTTGTATCTTCGTTGTACAGATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACA</genome_strand>
        <mrna_strand>AGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219059" ref_strand="+" ref_description="SGN-E219059 [cLEL-11-J14](-)">
      <seq>cgtctcgtataggtcctcaaaatcatcaacacgatatagaaaatcctgagacgtttagttggagctagattgtgtcttatgttactgttacagccaaaaaaagagttgagtgatttgttcatacagagttgtggagattgatgtttagtacaagttagaaacttattgtgttctactctaagttgtgcggactcttcactttccatgccacacacccgtgttggattctccaaaaatacactattttttggagtatctgacgcgcatcaatagacatttttgaagagtccgaccaacataggttctactatacgaaaaacagaaatagttgctgttgttgtttgtattgctgaaagaatatgtaaaaagtgaaatgcatatataagtagaagagagtatacaaaggtgttttatgaaaaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="101392" stop="107346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101692" g_stop="102112" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102113" i_stop="102566" i_length="454">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102567" g_stop="102585" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="440" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E219059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101692" e_stop="102112"/>
          <exon e_start="102567" e_stop="102585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAATTACGATTTTACGAGTCATCACGAACGATTTTAAGTACAATTTTCATTCCATATGTTTTTAAACTTGTTCACAAGACATGCCGGATGGACAAACTTGCCTTGTTCATCGTTCATCGGATGGGAATGATCAGGTCAATTTGCACCTTGACTAGTTCCACGAGATACCTGTCAGCTTCTACTAGTAACTCTATCCATCAAGAATAAGGCAAATTGGGCGAATGATTCAAAGCACAATTTTTTAGTCTATCTATGTTTAAATTGTTGACAAGTCATATCATATTGACAAAATTCGTTTGCATTATTCAACTTTCCACAAGTCACACATGACTGATAAGACTGAATATATTTTCATTCTACCAATCTCATTAAATTATCGACAAGTCTTATCGTATTGGTCTAATTAGCATGTGTTGTTAAATTATTCTTTAGATGAATTAAAGCATTTTATGTCAAGGTAAAAAAAGAAAAACAAA</genome_strand>
        <mrna_strand>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229610" ref_strand="+" ref_description="SGN-E229610 [cLEL-4-H22](-)">
      <seq>tgttacagccaaaaaaagagttgagtgatttgttcatacagagttgtggagattgatgtttagtacaagttagaaacttattgtgttctactctaagttgtgcggactcttcactttccatgccacacacccgtgttggattctccaaaaatacactattttttggagtatctgacgcgcatcaatagacatttttgaagagtccgaccaacataggttctactatacgaaaaccagaaatagttgctgttgttgtttgtattgctgaaagaatatgtaaaaagtgaaatgcatacataagtagaagagagtatacaaaggtgaaatatgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="101477" stop="102399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101777" g_stop="102115" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E229610" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101777" e_stop="102115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAATTA</genome_strand>
        <mrna_strand>TGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAACCAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATACATAAGTAGAAGAGAGTATACAAAGGTGAAATATGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447292" ref_strand="+" ref_description="SGN-E447292 [cSTA-25-L24]">
      <seq>aagatttcgggtctaccattttagacctcatagcatgttaaggttgataaaatgtgtagcaattggcggctgaacctccaacgaaatagggcatacatagtttgtagactgcactttcttgagatatatatataaacagaggaaagttgcagaagggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatataccctcgaggtgtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactgtatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatatatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacactatgctgtgacagatcatctgcctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102630" stop="106273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102930" g_stop="103172" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103173" i_stop="103807" i_length="635">
            <donor d_prob="0.909" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="472" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="105973" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="597" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E447292" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102930" e_stop="103172"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="105973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTTTGGGTATACCAATTTAGACCTCATGACATGTTAAGGTTGATAAAATGTGTGTAGCAATTGGCGGCTGAACCTCCAAAGAAATAGGGCTTACATAGTCTGTAAACTACACTTTCTTGAGATATATATAAAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTG</genome_strand>
        <mrna_strand>AAGATTTCGGGTCTACCATTTTAGACCTCATAGCATGTTAAGGTTGATAAAA--TGTGTAGCAATTGGCGGCTGAACCTCCAACGAAATAGGGCATACATAGTTTGTAGACTGCACTTTCTTGAGATATATAT----ATAAACAGAGGAAAGTTGCAGAAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATA-CC--CTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTGTATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATATATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACACTATGCTGTGACAGATCATCTGCCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473423" ref_strand="+" ref_description="SGN-E473423 [cSTB-32-G8]">
      <seq>gtagactgcactttcttgagatatatatataaacagaggaaagttgcagaagggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatataccctcgaggtgctctttcatattcactcatcgtgtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactgtatggctntgcttgtgatgcttgttctgctgaggcagtgaatcgtatatatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102757" stop="106234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103035" g_stop="103195" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="392" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="105934" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="478" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E473423" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103035" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="105934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTACACTTTCTTGAGATATATATAAAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATG</genome_strand>
        <mrna_strand>GTAGACTGCACTTTCTTGAGATATATAT----ATAAACAGAGGAAAGTTGCAGAAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATA-CC--CTCGAGGTGCTCTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTGTATGGCTNTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATATATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455197" ref_strand="+" ref_description="SGN-E455197 [cSTS-25-J9]">
      <seq>gagagagagcaaagttgcagcagggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttgtcgaggtgctctttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatggcttggagtttggagaatcctgatgggaatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcatggcttgcttgactccctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgcccgtggttctagaagtgcccttgcacttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102769" stop="106687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103068" g_stop="103195" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="366" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="542" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106387" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="664" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E455197" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103068" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACT</genome_strand>
        <mrna_strand>GAGAGAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTGTCGAGGTGCTCTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGCTTGGAGTTTGGAGAATCCTGATGGGAATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCATGGCTTGCTTGACTCCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746062" ref_strand="+" ref_description="SGN-E746062 [GI|47105340]">
      <seq>gagggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttatttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102789" stop="108007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103088" g_stop="103172" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103173" i_stop="103807" i_length="635">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="323" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="499" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106557" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="791" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107255" g_stop="107706" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="1243" r_length="452" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1244" polyA_stop="1256"/>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E746062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103088" e_stop="103172"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106557"/>
          <exon e_start="107255" e_stop="107706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAA</genome_strand>
        <mrna_strand>GAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585725" ref_strand="+" ref_description="SGN-E585725 [68188]">
      <seq>gggcagcttgatgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatataccctcgaggtgctctttcatattcactcatcgtgtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatgggttgtcagtttggagaatcctgatggggatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactgtatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatatatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacactatgctgtgacagatcatctgcctcatggcttgcttgactgcctgcttcctggacccgtgactttggtcttaacgcgaggtgagtcaagtattcttgagaagtcattaaagcctggattagagagcataggggttcgagtgccagactggtaacttcatcaggtgattgcccgtggttctagaagtgcccttgcacttactagtgcaaaactcagcggacaagctagtagcatagacatcaaagatttcgagaacctctgggagcactgtgcatatgtctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102790" stop="106771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103090" g_stop="103195" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="342" r_length="239" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="518" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106471" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="724" r_length="206" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E585725" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103090" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTG-GAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACT-GTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGAT</genome_strand>
        <mrna_strand>GGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCC-TC--GAGGTGCTCTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGGTTGTCAGTTTGGAGAATCCTGATGGGGATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTGTATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATATATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACACTATGCTGTGACAGATCATCTGCCTCATGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAACGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATTCTTGAGAAGTCATTAAAGCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGGTAACTTCATCA-GGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAAACTCAGCGGACAAGCTAGTAGCATAGACATCAAAGATTTCGAGAACCTCTGGGAGCACTGTGCATATGTCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613254" ref_strand="+" ref_description="SGN-E613254 [63026]">
      <seq>tgaattgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatggcttggagtttggataaccctgatgggaatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatttatgagatcaaaggacgcaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacggatcatctgcctcatggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgcccgtggttctagaagtgcccttgcacttactagtgcaaacctcagcggacaacctagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggtggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagcttgggaagtacaagattctaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102801" stop="106849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103101" g_stop="103172" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103173" i_stop="103807" i_length="635">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="310" r_length="238" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="486" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106549" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="770" r_length="284" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E613254" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103101" e_stop="103172"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGA</genome_strand>
        <mrna_strand>TGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGCTTGGAGTTTGGATAACCCTGATGGGAATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGCAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACGGATCATCTGCCTCATGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAACCTCAGCGGACAACCTAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGTGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTTGGGAAGTACAAGATTCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371737" ref_strand="+" ref_description="SGN-E371737 [TUS-30-G13]">
      <seq>tgcagcagacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102806" stop="106861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103106" g_stop="103195" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105958" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105959" g_stop="106024" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106557" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="686" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E371737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103106" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105959" e_stop="106024"/>
          <exon e_start="106266" e_stop="106557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG</genome_strand>
        <mrna_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282999" ref_strand="+" ref_description="SGN-E282999 [cLER-17-M8]">
      <seq>tgcagcatacccacaaaaatagcccaaattctgcctattttcaactctttcatatacccttctcgaggtgctgtttcatattcactcatcgggtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaagaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctgtattagagagcataggggttcgagtgccagactgtaacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102806" stop="106643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103106" g_stop="103195" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="328" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105958" i_length="1913">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105959" g_stop="106024" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106343" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="472" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E282999" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103106" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105959" e_stop="106024"/>
          <exon e_start="106266" e_stop="106343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</genome_strand>
        <mrna_strand>TGCAGCATACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGTATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486692" ref_strand="+" ref_description="SGN-E486692 [cSTE-22-P16]">
      <seq>caaaaatagcccaaattctgcctattttcaactctttcatataccctcgaggtgctctttcatattcactcatcgtgtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggttttagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtggagactaagaaggctactgtgtctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactgtatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatatatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacactatgctgtgacagatcatctgcctcatggcttgcttgactgcctgcttcctggacccgtgactttggtcttaacgcgaggtgagtcaagtattcttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgcccgtggttctagaagtgcccttgcacttactagtgcaaacctcagcggacaacctagtagcatagacatcaaagatttcgagaacctctgggagcactgtgcatatgtctatgatggtggaattcttccagctgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102819" stop="106794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103119" g_stop="103195" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="312" r_length="238" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="488" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106494" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="717" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E486692" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103119" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCG</genome_strand>
        <mrna_strand>CAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATA-CC--CTCGAGGTGCTCTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTTAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTGGAGACTAAGAAGGCTACTGTGTCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTGTATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATATATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACACTATGCTGTGACAGATCATCTGCCTCATGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAACGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATTCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAACCTCAGCGGACAACCTAGTAGCATAGACATCAAAGATTTCGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGTGGAATTCTTCCAGCTGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690361" ref_strand="+" ref_description="SGN-E690361 [LH_Ea03E23]">
      <seq>ttttcatatacccttctcgaggtgctgtttcatattcactcatcgagtggaaaaaattggatttttgaacttgtgggcaagaagtaggaagggtttaagtgcagttagtgtgaagaaaatgggttggagtttggagaatcctgatggggatgtagagactaacaaggctactgtatctcctgcagcagaagattatggtcaagaggcaattgaagctatcagggctgggaaagtcatagctgttcccactgacacactatatggctttgcttgtgatgcttgttctgctgaggcagtgaatcgtatttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagatagcataggggttcgagtgccagactgtaacttcatcagggtgattgcccgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacctattagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="102853" stop="106832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103152" g_stop="103195" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104045" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="282" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105849" g_stop="106024" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="458" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106266" g_stop="106532" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="725" r_length="267" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E690361" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103152" e_stop="103195"/>
          <exon e_start="103808" e_stop="104045"/>
          <exon e_start="105849" e_stop="106024"/>
          <exon e_start="106266" e_stop="106532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATCGTTAGTCTTCTGCCTCTTTTCTTCTTTTATTATGTACTCTTTTATGTTCATGTTTTACAACTTTATCTGTGGAATAAAAATGCTTTCTTGGAGAAAAATTAAGTGATTTTTGAAATATTTGGTTAGTAAAGAATATTTGTATATAATCTAGACAAATACTACGAGGATGTGATCGAGTATAGGTGTGGGGGTGATGGGGATGGGATATGAGAGGATGGGGGTGGAGTATTGTGGAGAGAGTATGCTTGGTATGAATAAAAATGCAATCTTGGAACATAAGTGATATATTTTTTATGTTGACCAGTAAAAAGACTTATTTTCTTGTATTCAGTACATATTTAGAGAATATTATTCTAAAATTATTTGTATATAATCTAGTGGATACTATGAGGGTGAGCTGGGATACTATGAGGGTGAGCTGGGTGCAGGTGTGTGGGGGTGGAGTCTATGAGAGGATGGGGTGAGTATGGTGGAGATAGTGTGGGGGGTGGGTGGTCTCCTAGGCTCCTACCAAACATACCCTTAGTCTTTCTTATAATTTTTGTTTCCAGTTTAGCTTAGACCTTACAAAGATTAAAACTTTTTGGTTTCTTGTTTTACTTTTGTGTTCAGGGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTGGTATGCCGCTACTTCGCTATTTTTCATTTGTTGATAAGTTTAAGACATCAAAAATGTTAGATACATGGTAATGTAATTTTATGAGTATGCTTGGTACAAATAAATTCGGAAACAACCTCTCTATCCATAAACGTAGGGGTAAGGACTGTGCTACCCTTCCTGATACAAAAACTCTTCCAAAACTCATTTAAATACCTCAATATTGAGCCAATAGTCCTACTAACCCAAAAGTCAGGTTACAAAACTTATGGAACTGATGAAATTCCATTCTGAGACTACACAAGGGATTGCAACTTAGAATGTTGTCGTTGCTGCTTGGTACAAATAATCTGTTAGTACTCTTGAGTCTTGGGTTTTGGTCTACTTTATATTGGAAAAAAAAAAGAAATAGATCGGAGATGGTGTTATCAAAAGTGCGTGTAAACCCTGAAGTGAGGCGCAAAACATGTTGAGTGCTTCCCCTTGCTTTGCAGGCGCATCAGTCCTTGTCAATGAGGGTAATTTGGAAGAGGCGATACTAAATAATTGATATTTCAGCTTATCGATTTTGTTTTCTTTTTTCATTTTCTTTGTTCAAGTACTTGTTATGCATGTTATAATTATTAGTCTTGGACTAAACATACATTTTTGTAATTCTTTTTCCACTTGTGCCTTTCTGTATTAAAACCCACACTTTATTTTTGCACTGAAAGCCTCAACAAACCTTAGAGGTTGTTCTTTCCTTTTTGCTGTTGATAACACTGATTAATGAGGAAAGGGTAGAATTGAATTAAACATTAGTCTTGGAGAGTAAACGTAAGAATTGTGCCTCAAAGTACTCTAAAGTGTGTTGTTGATATTTTTGCCTTAGGTTCAATGTTATTCATTAGGAGCTTTGATTTTGCTTAGACGCCCGAATAATCTTTATTAAATTTCTTTGCGTGAAAAGATTGACCTTTGATTCCATTGCCTTCACTTTGAAAAGCCAGTAGAAGAAACAACTAGGATTGGTAGGAGGTCAAGGCATGACCTCTCTACTGGTAGTAAACAATTTAATATCATGAAGCCTATGTGGACAACGAGATGTTGTACAAATCAGAACAATTAGAAATTTCAGTGCTAAAAGAATAGAGGAAACGCTCTGGAAGCAAAACTCCTAGGCACACCTTTGTTACACTTAAGTAAATGGGTTCTCTAGTCTATGAATTAAGCTGTGTTTTGATATTGGTATGATTTGAAGTCACTACACCGCATTGGTTTCAAATTGAATATGATGCTTTGGCTGAGGGCAAGGTACAAAATCATCAAACAGCGTCTCAGGAATCTCTAGGAGACAGATTAACCAACTACATAGAAGCAGTAGAAGGTGGTTCTATTAGTGATAGTCAAACAGGCTTTTAGCTGACTATGAAACTGAGAACATAAGTGACATTGAGGAGAGCAATCAAGGCCATGACTCCTTAAGGAAGATTAATGGCATTTTTCTTTGTGCTAGTGAGTTCATGTAGTCTTCCGTATGAGCAACAAAGAAAGAAGAAGGCTTTTCTCTTTGCGTGAAATTTGTATATGGAGTTCATCCTTTTTCATTGTTTAGCAATCAAAGTGGCGATTTACATGATTTTATATATATATATTTTAAAAAGCCTATCCTTCATAGACTATTGCATTAACTTCTTGACTGAACAGAAAGTTTCAAACATTCTTGTTGTTTCACTGTTTGTTTGACCTAGAAATTTATCAAAAAGACAATTTACTTTGTTGTTTATTTATCTAAGTCGTATTTATGGGAAGTCTGATTTAATTCTATATGATGAATTGCTGTAGTTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGA</genome_strand>
        <mrna_strand>TTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAACAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGATAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCCCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCTATTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303838" ref_strand="+" ref_description="SGN-E303838 [cLEX-4-N14]">
      <seq>tttatgagatcaaaggacgtaagcatacaagtcctctggctatttgtgttggcgatgttcatgacataaaacattatgctgtgacagatcatctgcctcttggcttgcttgactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="105572" stop="106846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105872" g_stop="106024" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106266" g_stop="106546" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="434" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E303838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105872" e_stop="106024"/>
          <exon e_start="106266" e_stop="106546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTA</genome_strand>
        <mrna_strand>TTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344901" ref_strand="+" ref_description="SGN-E344901 [cTOF-21-P5]">
      <seq>gactgcctgcttcctggacccgtgactttggtcttaaggcgaggtgagtcaagtatccttgagaagtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgntgagtttgtaatgggaagtgttccagtcagttactaaataggattcaaggtgtgttttatgatttcccatttgagagccatttacaatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="105682" stop="107891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105982" g_stop="106024" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106266" g_stop="106557" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="335" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107255" g_stop="107592" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="673" r_length="338" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E344901" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105982" e_stop="106024"/>
          <exon e_start="106266" e_stop="106557"/>
          <exon e_start="107255" e_stop="107592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAGGTTAGTAGCTAAATGTTATGTCAACAAATGCTGCATTCACGGGTATCCTTCAGAGGTTAAATATCTTAAGTTAGTACTGCTTCATTGTAACATACTAACTGTAAGTAACTTGTTGATACACTTGAATAAGGAGCAAGTCGCTCTCCTAGGCAAACACTGGCCCATGTTCAGTAATTTCAGAAACTTTTATCTTTCTCTTATGAATCTTCTGTACTGGATGCTGAATTCAGATATTCTGCAGGTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAA</genome_strand>
        <mrna_strand>GACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG.................................................................................................................................................................................................................................................GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGNTGAGTTTGTAATGGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAGGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371736" ref_strand="+" ref_description="SGN-E371736 [TUS-30-G13](-)">
      <seq>agtcattaaaccctggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttatttctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="105987" stop="108007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106287" g_stop="106557" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107255" g_stop="107715" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="732" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E371736" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106287" e_stop="106557"/>
          <exon e_start="107255" e_stop="107715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</genome_strand>
        <mrna_strand>AGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354147" ref_strand="+" ref_description="SGN-E354147 [cTOS-16-L10]">
      <seq>tggattagagagcataggggttcgagtgccagactgtaacttcatcagggtgattgctcgtggttctagaagtgcccttgcacttactagtgcaaatctcagcggacaacccagtagcatagacatcaaagattttgagaacctctgggagcactgtgcatatgtctatgatggcggaattcttccagctgggcgagctggatcgacagtggtggatcttactaagctggggaagtacaagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaaagtgttcagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccattttacatgtaatgaatcatggtgtaacacgaaaatatcatattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="106000" stop="107929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106300" g_stop="106557" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107255" g_stop="107629" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="633" r_length="375" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E354147" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106300" e_stop="106557"/>
          <exon e_start="107255" e_stop="107629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGG-AAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTT</genome_strand>
        <mrna_strand>TGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAAGTGTT-CAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTTACATGTAATGAATCATGGTGTAACACGAAAATATCATATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303494" ref_strand="+" ref_description="SGN-E303494 [cLEX-2-M16]">
      <seq>aagattctaagacctggaagtgcaaaggaagagaccattgctatccttgaaagacactcactactggaagatggaactggagattagcaagccgctgctcaagttgaagctgttcagccagacgagcctcgtgcctgagtttgtaaagtacaactcataaaaacttgattcgatgcagttgtgcttcctttgtgtctatggaaaggtttcgtccttctatttgaagtcgagtagaggagaggaacacacctttgttcatgcattgttgagtttgtcaatggaagtgttccagtcagttactaaataggattcaaagtgtgttttatgatttcccatttgagagccatttacaatgtaatgaatcatgttgtaacacgaaaatatcatatttttttaattttttgacttctgacattcattagtgtcttgcttatgaataatgaatggaaaaaattctatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0161D01-kMtbc/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0161D01.2" temp_strand="+" temp_description="C11HBa0161D01.2  AC212437.2 htgs_phase:3 submitted_to_sgn_as:gi|166159195|gb|AC212437.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0161D01, complete sequence">
        <position start="106238" stop="107996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106538" g_stop="106557" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107255" g_stop="107705" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="471" r_length="451" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0161D01.2" gen_strand="+" ref_id="SGN-E303494" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0161D01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106538" e_stop="106557"/>
          <exon e_start="107255" e_stop="107705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTCTAAGACCTGGAAGGTAAGCTTCCAGTACCTAAGGACTAGGGTGCAAACTACTGTTGAGATGAACTGATATCTTTATGAGAACGCTTCAAAAAAGTAGATTTCTTAAATGAATGAGTTGAACCAGAACACTTGAGCTGATGCTTATTAATTTAGAAAAGTAGAGATCCCAGATTCTTAAGCATGGTTCAAATTGGCATTTGTATAGAAGTCGTCTTATTAATCATGTGTCGGTAAGGGCAATGAAAGCATCAGGTTCCCTGGATATGTCACCTCCCACCAGCAACAAGTACCAATACCAGTACCAGATAACTATATCCACCAAGGCTAGGACCGATGAGAAGAAATTGGAAAACGCTATCACTTTTCACTCAATTCATTCATCTAACAAATGTCATCTCTCTTTTGCCTAGTTCATTTTATTGCTTATGTTGTTCTAGTCCATATATCTTGATTGTAGCCATGACATCTTCCCTATGCTTAAACCACAAAAAAAAAAAAAAAAACTTTAAGCCTTCGAGGGACAAAACTATCTTCATGCATCTAGATTTCTGTCTGCTGCAATTCCTCTAGACAATGTCTGTCATGCACTTGTTGTACACAATTATTTTTTGTGTTGTCGAAACAACTAGTCATCATTTTTTACCGTTTGGACTAGAAAGTCATTATGCTACTGCTGTGCTTAAATTTGATGAATACTCTACTTATGACAGTGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAA</genome_strand>
        <mrna_strand>AAGATTCTAAGACCTGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCTATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>148</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4187" PGL_stop="5593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4187" e_stop="4433"/>
            <exon e_start="4513" e_stop="4638"/>
            <exon e_start="5274" e_stop="5433"/>
            <exon e_start="5512" e_stop="5593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="0.968"/>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="0.984"/>
          <exon-intron don_prob="0.999" acc_prob="0.791" e_score="0.994"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="4187" e_stop="4433" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4434" i_stop="4512" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="4513" e_stop="4638" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="4639" i_stop="5273" i_length="635"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="5274" e_stop="5433" e_length="160"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.791">
            <gDNA_intron_boundary i_start="5434" i_stop="5511" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="5512" e_stop="5593" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4187" stop="4433"/>
              <exon start="4513" stop="4638"/>
              <exon start="5274" stop="5431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4224" stop="4433"/>
              <exon start="4513" stop="4638"/>
              <exon start="5274" stop="5433"/>
              <exon start="5512" stop="5593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4224" stop="4433"/>
              <exon start="4513" stop="4623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTTCTCTCTCCTCCCTTTTTCCCGTCCGCCATCATTTTCTACTTCTCCGAAATCCTCCGTCACCGGAAAAATAAGTTAACCGGCACCGAAAATGAGCGTTATCGACATTATCCTCAGAGTCGATACGATATGTAAGAAGTACGAAAAGTACGATGTCGAGAAGCATTCAGCTAATGATTCCCCCGGCGATGCCTTCGCTCGCCTTTATTCGTCCTTCGAATCTCAAATTGACGCTACTTCTGAG : AAAGCAGAGATGGCTGCTATGGAAACTAACAGAGCTAAAGCGGTGGCTATGAAGGCGGAGGTACGACGAACAAAGGCGCGTTTAATGGATGAAATCAAAAAATTGCACAAACTTGCTCAGAAAAAG : GTTAAAGGACTATCCCAAGAGGAACTGGAGACTCGTGGTGATTTGGTACATATGCTATCGGAGAGAATTCAGGCAATACCTGATGGGAGTATAAATGCAGCCAAAACAACAGGAGGTCGCGGGACTTCATCATTCAACAAAAATATAAAATTTGACTCAG : AGGGACAGTTCAACGAGGGTTTCTACGAGCAAACTGAAGAGGGCACTCATTTTAGATCTGAGTATGAGATACGGAAAATGAA</gDNA_template>
            <first_frame> K  F  L  S  P  P  F  F  P  S  A  I  I  F  Y  F  S  E  I  L  R  H  R  K  N  K  L  T  G  T  E  N  E  R  Y  R  H  Y  P  Q  S  R  Y  D  M  *  E  V  R  K  V  R  C  R  E  A  F  S  *  *  F  P  R  R  C  L  R  S  P  L  F  V  L  R  I  S  N  *  R  Y  F  *   : E  S  R  D  G  C  Y  G  N  *  Q  S  *  S  G  G  Y  E  G  G  G  T  T  N  K  G  A  F  N  G  *  N  Q  K  I  A  Q  T  C  S  E  K   : G  *  R  T  I  P  R  G  T  G  D  S  W  *  F  G  T  Y  A  I  G  E  N  S  G  N  T  *  W  E  Y  K  C  S  Q  N  N  R  R  S  R  D  F  I  I  Q  Q  K  Y  K  I  *  L  R :   G  T  V  Q  R  G  F  L  R  A  N  *  R  G  H  S  F  *  I  *  V  *  D  T  E  N  E </first_frame>
            <second_frame>  S  F  S  L  L  P  F  S  R  P  P  S  F  S  T  S  P  K  S  S  V  T  G  K  I  S  *  P  A  P  K  M  S  V  I  D  I  I  L  R  V  D  T  I  C  K  K  Y  E  K  Y  D  V  E  K  H  S  A  N  D  S  P  G  D  A  F  A  R  L  Y  S  S  F  E  S  Q  I  D  A  T  S  E  :  K  A  E  M  A  A  M  E  T  N  R  A  K  A  V  A  M  K  A  E  V  R  R  T  K  A  R  L  M  D  E  I  K  K  L  H  K  L  A  Q  K  K  :  V  K  G  L  S  Q  E  E  L  E  T  R  G  D  L  V  H  M  L  S  E  R  I  Q  A  I  P  D  G  S  I  N  A  A  K  T  T  G  G  R  G  T  S  S  F  N  K  N  I  K  F  D  S   : E  G  Q  F  N  E  G  F  Y  E  Q  T  E  E  G  T  H  F  R  S  E  Y  E  I  R  K  M   </second_frame>
            <third_frame>   V  S  L  S  S  L  F  P  V  R  H  H  F  L  L  L  R  N  P  P  S  P  E  K  *  V  N  R  H  R  K  *  A  L  S  T  L  S  S  E  S  I  R  Y  V  R  S  T  K  S  T  M  S  R  S  I  Q  L  M  I  P  P  A  M  P  S  L  A  F  I  R  P  S  N  L  K  L  T  L  L  L  R :   K  Q  R  W  L  L  W  K  L  T  E  L  K  R  W  L  *  R  R  R  Y  D  E  Q  R  R  V  *  W  M  K  S  K  N  C  T  N  L  L  R  K  R :   L  K  D  Y  P  K  R  N  W  R  L  V  V  I  W  Y  I  C  Y  R  R  E  F  R  Q  Y  L  M  G  V  *  M  Q  P  K  Q  Q  E  V  A  G  L  H  H  S  T  K  I  *  N  L  T  Q  :  R  D  S  S  T  R  V  S  T  S  K  L  K  R  A  L  I  L  D  L  S  M  R  Y  G  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4269" stop="4433"/>
                    <exon start="4513" stop="4638"/>
                    <exon start="5274" stop="5433"/>
                    <exon start="5512" stop="5591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAPKMSVIDIILRVDTICKKYEKYDVEKHSANDSPGDAFARLYSSFESQIDATSEKAEMAAMETNRAKAVAMKAEVRRTKARLMDEIKKLHKLAQKKVKGLSQEELETRGDLVHMLSERIQAIPDGSINAAKTTGGRGTSSFNKNIKFDSEGQFNEGFYEQTEEGTHFRSEYEIRKM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11200" PGL_stop="16761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11200" e_stop="11633"/>
            <exon e_start="11718" e_stop="11727"/>
            <exon e_start="11937" e_stop="12336"/>
            <exon e_start="13216" e_stop="13493"/>
            <exon e_start="16093" e_stop="16761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.982" e_score="0.903"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.600"/>
          <exon-intron don_prob="0.999" acc_prob="0.904" e_score="0.976"/>
          <exon-intron don_prob="0.973" acc_prob="0.988" e_score="0.953"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="11200" e_stop="11633" e_length="434"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.982">
            <gDNA_intron_boundary i_start="11634" i_stop="11717" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="11718" e_stop="11727" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="11728" i_stop="11936" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="11937" e_stop="12336" e_length="400"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.904">
            <gDNA_intron_boundary i_start="12337" i_stop="13215" i_length="879"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="13216" e_stop="13493" e_length="278"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.988">
            <gDNA_intron_boundary i_start="13494" i_stop="16092" i_length="2599"/>
          </intron>
          <exon e_serial="5" e_score="0.924">
            <gDNA_exon_boundary e_start="16093" e_stop="16761" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11200" stop="11633"/>
              <exon start="11718" stop="11727"/>
              <exon start="11937" stop="12217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11222" stop="11502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11274" stop="11633"/>
              <exon start="11718" stop="11727"/>
              <exon start="11937" stop="12266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12069" stop="12336"/>
              <exon start="13216" stop="13493"/>
              <exon start="16093" stop="16229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12069" stop="12336"/>
              <exon start="13216" stop="13493"/>
              <exon start="16093" stop="16224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13417" stop="13493"/>
              <exon start="16093" stop="16761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13449" stop="13493"/>
              <exon start="16093" stop="16571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACTAAAATCAAACAAAAACTTAGAAAAAAGGAAAATCAAGAAGAAGAAGTGAAGTTGTTATAACAACTCTATTGTTTGTTTTTGTTTTAATAACATTGTACACTATACAATGAGTATTTTTTGGGATTTAGCTGTTTTGAGTAAAATCTTGTGGCTTCTCTTGAAATCGAGCTGAGCTGAACTGAACTGAATTGAACTAAATCGAACTTCTTCTTTTTTCTTTTTGGTGTGTGTGTGTGTTCATTTTACTTCAAATTTTGAGGTTCAAGAAGAAAAATGATGTCTAATGATGGACTTTCTTGTTCCATGAGAGGTGGTTTGACTTTGATTCAAGATTCAAAAAACCATAATACTAATATAAATCATCAAAATCCAAACCCTAATTCAAATCTAGATGTTTCTTCAGCTAATAAGAGGAAGAGAAATCTGAAT : GAACGTCCAT : ATCCAAATGCAGAAGTGATAGCTCTTTCACCAAAATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAACTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAGAGAGTATAAATGTGATTGTGGCACACTTTTTTCCAG : AAAGGATAGCTTTATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTACAAGATTTACATCAATCCAAACAGCAGTAAATCTTAATAATTTGAGAAATCAATTGATTAATGGTGGGATTAGCACTAATCTCCAACAACAACAACAAATGAGTGGAAATATTTCTCAATTAATGGGATTGGGATCCTTAGACCCTTCAAATCAACTTAATCTTGATCATGGACAAAAATCAAGGCTACCACTTTGGCTTCATCATGAAAATTCAAATTATG : GTAACCCTAATGACTTTTTATCAACACCATCAACCACAACAAGCACCTTGCCTCATGAGTTGGTACAAGTGGCACCACACGCAAACATGCTAGGCTCGTCTTCGTTACATAAGAATAACAACAACAATAACAATAATCAATGGTTCGTCAATGACGATGGTGGTGATGCCATCATCACCACCTCGTCATCGATGCTGATGCCACGTGTGCTAAAAGAGGAAGAAGAGAACAAAACTCTTAGCCCAATGTATTACAATAATAGCCACATGTCAGCAACAGCACTTTTGCAAATAGCAGCCCAGATTGGATCAACAAGGAGCAACAACAATTCACCACTCTTTAGCAATCAATTTGGGCTAATGACCTCATCTAGCCTTAGTATGAAGAATAGTTCTTCATCATCAAGTGCCTCAAATGTGGCTATTCATGAAAATGTTCAAGGAAATAATGGATTGCTAATAGGGGCTACAAATTCAACAACTTTTGTGGCTAACAATGCAAATACTTTGATGATGATGCAAGATAAAGGGAAGCAAGGTAACTTAACAAGAGATTTTCTTGGTGGTGGAAGGAATGAAAAGAGGCTATTTTTGCAACAAACTCATGAGATGGCCAAGTTTGAAAATAATAAATAATAATAATTCTAGGATTTTTTAATAGGTTATTAGA</gDNA_template>
            <first_frame> I  L  K  S  N  K  N  L  E  K  R  K  I  K  K  K  K  *  S  C  Y  N  N  S  I  V  C  F  C  F  N  N  I  V  H  Y  T  M  S  I  F  W  D  L  A  V  L  S  K  I  L  W  L  L  L  K  S  S  *  A  E  L  N  *  I  E  L  N  R  T  S  S  F  F  F  L  V  C  V  C  V  H  F  T  S  N  F  E  V  Q  E  E  K  *  C  L  M  M  D  F  L  V  P  *  E  V  V  *  L  *  F  K  I  Q  K  T  I  I  L  I  *  I  I  K  I  Q  T  L  I  Q  I  *  M  F  L  Q  L  I  R  G  R  E  I  *  M :   N  V  H  :  I  Q  M  Q  K  *  *  L  F  H  Q  N  L  *  W  R  R  I  D  S  C  V  K  Y  A  T  R  V  S  K  E  I  K  T  Y  N  S  I  E  E  V  T  I  Y  H  G  N  *  N  K  E  I  T  K  K  L  *  R  K  K  F  I  F  V  L  K  N  H  V  Y  I  M  I  H  Q  E  H  *  V  I  *  L  G  L  K  N  I  T  Q  E  N  M  V  K  K  N  G  N  V  K  N  V  Q  K  N  M  Q  F  N  L  I  G  K  L  I  V  R  F  V  V  L  E  S  I  N  V  I  V  A  H  F  F  P   : E  R  I  A  L  *  H  T  E  H  F  V  M  H  *  L  K  K  V  Q  D  L  H  Q  S  K  Q  Q  *  I  L  I  I  *  E  I  N  *  L  M  V  G  L  A  L  I  S  N  N  N  N  K  *  V  E  I  F  L  N  *  W  D  W  D  P  *  T  L  Q  I  N  L  I  L  I  M  D  K  N  Q  G  Y  H  F  G  F  I  M  K  I  Q  I  M  :  V  T  L  M  T  F  Y  Q  H  H  Q  P  Q  Q  A  P  C  L  M  S  W  Y  K  W  H  H  T  Q  T  C  *  A  R  L  R  Y  I  R  I  T  T  T  I  T  I  I  N  G  S  S  M  T  M  V  V  M  P  S  S  P  P  R  H  R  C  *  C  H  V  C  *  K  R  K  K  R  T  K  L  L  A  Q  C  I  T  I  I  A  T  C  Q  Q  Q  H  F  C  K  *  Q  P  R  L  D  Q  Q  G  A  T  T  I  H  H  S  L  A  I  N  L  G  *  *  P  H  L  A  L  V  *  R  I  V  L  H  H  Q  V  P  Q  M  W  L  F  M  K  M  F  K  E  I  M  D  C  *  *  G  L  Q  I  Q  Q  L  L  W  L  T  M  Q  I  L  *  *  *  C  K  I  K  G  S  K  V  T  *  Q  E  I  F  L  V  V  E  G  M  K  R  G  Y  F  C  N  K  L  M  R  W  P  S  L  K  I  I  N  N  N  N  S  R  I  F  *  *  V  I  R </first_frame>
            <second_frame>  Y  *  N  Q  T  K  T  *  K  K  G  K  S  R  R  R  S  E  V  V  I  T  T  L  L  F  V  F  V  L  I  T  L  Y  T  I  Q  *  V  F  F  G  I  *  L  F  *  V  K  S  C  G  F  S  *  N  R  A  E  L  N  *  T  E  L  N  *  I  E  L  L  L  F  S  F  W  C  V  C  V  F  I  L  L  Q  I  L  R  F  K  K  K  N  D  V  *  *  W  T  F  L  F  H  E  R  W  F  D  F  D  S  R  F  K  K  P  *  Y  *  Y  K  S  S  K  S  K  P  *  F  K  S  R  C  F  F  S  *  *  E  E  E  K  S  E   : *  T  S  I :   S  K  C  R  S  D  S  S  F  T  K  I  S  N  G  D  E  S  I  R  V  *  N  M  Q  Q  G  F  P  K  R  S  K  L  T  T  P  *  K  R  S  Q  F  T  M  E  I  E  T  K  K  *  Q  R  S  Y  K  E  K  S  L  Y  L  S  *  K  I  M  C  T  S  *  S  I  K  S  I  R  *  F  N  W  G  *  K  T  L  L  K  K  T  W  *  K  K  M  E  M  *  K  M  F  K  K  I  C  S  S  I  *  L  E  S  S  *  *  D  L  W  Y  *  R  V  *  M  *  L  W  H  T  F  F  Q  :  K  G  *  L  Y  N  T  Q  S  I  L  *  C  I  S  *  R  K  Y  K  I  Y  I  N  P  N  S  S  K  S  *  *  F  E  K  S  I  D  *  W  W  D  *  H  *  S  P  T  T  T  T  N  E  W  K  Y  F  S  I  N  G  I  G  I  L  R  P  F  K  S  T  *  S  *  S  W  T  K  I  K  A  T  T  L  A  S  S  *  K  F  K  L  W :   *  P  *  *  L  F  I  N  T  I  N  H  N  K  H  L  A  S  *  V  G  T  S  G  T  T  R  K  H  A  R  L  V  F  V  T  *  E  *  Q  Q  Q  *  Q  *  S  M  V  R  Q  *  R  W  W  *  C  H  H  H  H  L  V  I  D  A  D  A  T  C  A  K  R  G  R  R  E  Q  N  S  *  P  N  V  L  Q  *  *  P  H  V  S  N  S  T  F  A  N  S  S  P  D  W  I  N  K  E  Q  Q  Q  F  T  T  L  *  Q  S  I  W  A  N  D  L  I  *  P  *  Y  E  E  *  F  F  I  I  K  C  L  K  C  G  Y  S  *  K  C  S  R  K  *  W  I  A  N  R  G  Y  K  F  N  N  F  C  G  *  Q  C  K  Y  F  D  D  D  A  R  *  R  E  A  R  *  L  N  K  R  F  S  W  W  W  K  E  *  K  E  A  I  F  A  T  N  S  *  D  G  Q  V  *  K  *  *  I  I  I  I  L  G  F  F  N  R  L  L   </second_frame>
            <third_frame>   T  K  I  K  Q  K  L  R  K  K  E  N  Q  E  E  E  V  K  L  L  *  Q  L  Y  C  L  F  L  F  *  *  H  C  T  L  Y  N  E  Y  F  L  G  F  S  C  F  E  *  N  L  V  A  S  L  E  I  E  L  S  *  T  E  L  N  *  T  K  S  N  F  F  F  F  L  F  G  V  C  V  C  S  F  Y  F  K  F  *  G  S  R  R  K  M  M  S  N  D  G  L  S  C  S  M  R  G  G  L  T  L  I  Q  D  S  K  N  H  N  T  N  I  N  H  Q  N  P  N  P  N  S  N  L  D  V  S  S  A  N  K  R  K  R  N  L  N  :  E  R  P   : Y  P  N  A  E  V  I  A  L  S  P  K  S  L  M  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  N  N  K  E  V  I  K  K  K  V  Y  I  C  P  E  K  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  V  K  K  H  Y  S  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  K  Y  A  V  Q  S  D  W  K  A  H  S  K  I  C  G  T  R  E  Y  K  C  D  C  G  T  L  F  S  R :   K  D  S  F  I  T  H  R  A  F  C  D  A  L  A  E  E  S  T  R  F  T  S  I  Q  T  A  V  N  L  N  N  L  R  N  Q  L  I  N  G  G  I  S  T  N  L  Q  Q  Q  Q  Q  M  S  G  N  I  S  Q  L  M  G  L  G  S  L  D  P  S  N  Q  L  N  L  D  H  G  Q  K  S  R  L  P  L  W  L  H  H  E  N  S  N  Y   : G  N  P  N  D  F  L  S  T  P  S  T  T  T  S  T  L  P  H  E  L  V  Q  V  A  P  H  A  N  M  L  G  S  S  S  L  H  K  N  N  N  N  N  N  N  N  Q  W  F  V  N  D  D  G  G  D  A  I  I  T  T  S  S  S  M  L  M  P  R  V  L  K  E  E  E  E  N  K  T  L  S  P  M  Y  Y  N  N  S  H  M  S  A  T  A  L  L  Q  I  A  A  Q  I  G  S  T  R  S  N  N  N  S  P  L  F  S  N  Q  F  G  L  M  T  S  S  S  L  S  M  K  N  S  S  S  S  S  S  A  S  N  V  A  I  H  E  N  V  Q  G  N  N  G  L  L  I  G  A  T  N  S  T  T  F  V  A  N  N  A  N  T  L  M  M  M  Q  D  K  G  K  Q  G  N  L  T  R  D  F  L  G  G  G  R  N  E  K  R  L  F  L  Q  Q  T  H  E  M  A  K  F  E  N  N  K  *  *  *  F  *  D  F  L  I  G  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11463" stop="11633"/>
                    <exon start="11718" stop="11727"/>
                    <exon start="11937" stop="12336"/>
                    <exon start="13216" stop="13493"/>
                    <exon start="16093" stop="16727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1491</number_coding_nucleotides>
                  <number_encoded_amino_acids>497</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSRRKMMSNDGLSCSMRGGLTLIQDSKNHNTNINHQNPNPNSNLDVSSANKRKRNLNERPYPNAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKKVYICPEKSCVHHDPSRALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESTRFTSIQTAVNLNNLRNQLINGGISTNLQQQQQMSGNISQLMGLGSLDPSNQLNLDHGQKSRLPLWLHHENSNYGNPNDFLSTPSTTTSTLPHELVQVAPHANMLGSSSLHKNNNNNNNNQWFVNDDGGDAIITTSSSMLMPRVLKEEEENKTLSPMYYNNSHMSATALLQIAAQIGSTRSNNNSPLFSNQFGLMTSSSLSMKNSSSSSSASNVAIHENVQGNNGLLIGATNSTTFVANNANTLMMMQDKGKQGNLTRDFLGGGRNEKRLFLQQTHEMAKFENNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11824" e_stop="12378"/>
            <exon e_start="12670" e_stop="12863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.851"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="11824" e_stop="12378" e_length="555"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12379" i_stop="12669" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="0.851">
            <gDNA_exon_boundary e_start="12670" e_stop="12863" e_length="194"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11824" stop="12378"/>
              <exon start="12670" stop="12863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAATTGAAAATGATATACAACACTCTAAATTAAGATTTTTTTCTTCTCTTTTTAACTCTTCTAATTGCTCTAACATAACTATAACTTCTTTTTTGTTGCTAAAAAAAATAGATCCAAATGCAGAAGTGATAGCTCTTTCACCAAAATCTCTAATGGCGACGAATCGATTCGTGTGTGAAATATGCAACAAGGGTTTCCAAAGAGATCAAAACTTACAACTCCATAGAAGAGGTCACAATTTACCATGGAAATTGAAACAAAGAAATAACAAAGAAGTTATAAAGAAAAAAGTTTATATTTGTCCTGAAAAATCATGTGTACATCATGATCCATCAAGAGCATTAGGTGATTTAACTGGGGTTAAAAAACATTACTCAAGAAAACATGGTGAAAAAAAATGGAAATGTGAAAAATGTTCAAAAAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGTAAGATTTGTGGTACTAGAGAGTATAAATGTGATTGTGGCACACTTTTTTCCAGGTACGTAATCTCTGTCTCAATTTACGTGACACATTTTACATT : TGTCTTTAGCTAAGTATTAGATGTGACTATGGTACACTATTTTCTAGGTACCTTTCATGAATTAGATTTTATTACTTTTAAGAGAATTTAATTTGATAGAGAATATAGGTAATAAAGTAATATTGTCCTATGATTAGTTTGTTGATGAAATAAATGGTATAGATATATGTGAAATTTAATTCAAACTCTATCAA</gDNA_template>
            <first_frame> F  N  *  K  *  Y  T  T  L  *  I  K  I  F  F  F  S  F  *  L  F  *  L  L  *  H  N  Y  N  F  F  F  V  A  K  K  N  R  S  K  C  R  S  D  S  S  F  T  K  I  S  N  G  D  E  S  I  R  V  *  N  M  Q  Q  G  F  P  K  R  S  K  L  T  T  P  *  K  R  S  Q  F  T  M  E  I  E  T  K  K  *  Q  R  S  Y  K  E  K  S  L  Y  L  S  *  K  I  M  C  T  S  *  S  I  K  S  I  R  *  F  N  W  G  *  K  T  L  L  K  K  T  W  *  K  K  M  E  M  *  K  M  F  K  K  I  C  S  S  I  *  L  E  S  S  *  *  D  L  W  Y  *  R  V  *  M  *  L  W  H  T  F  F  Q  V  R  N  L  C  L  N  L  R  D  T  F  Y  I  :  C  L  *  L  S  I  R  C  D  Y  G  T  L  F  S  R  Y  L  S  *  I  R  F  Y  Y  F  *  E  N  L  I  *  *  R  I  *  V  I  K  *  Y  C  P  M  I  S  L  L  M  K  *  M  V  *  I  Y  V  K  F  N  S  N  S  I   </first_frame>
            <second_frame>  S  I  E  N  D  I  Q  H  S  K  L  R  F  F  S  S  L  F  N  S  S  N  C  S  N  I  T  I  T  S  F  L  L  L  K  K  I  D  P  N  A  E  V  I  A  L  S  P  K  S  L  M  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  N  N  K  E  V  I  K  K  K  V  Y  I  C  P  E  K  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  V  K  K  H  Y  S  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  K  Y  A  V  Q  S  D  W  K  A  H  S  K  I  C  G  T  R  E  Y  K  C  D  C  G  T  L  F  S  R  Y  V  I  S  V  S  I  Y  V  T  H  F  T  F :   V  F  S  *  V  L  D  V  T  M  V  H  Y  F  L  G  T  F  H  E  L  D  F  I  T  F  K  R  I  *  F  D  R  E  Y  R  *  *  S  N  I  V  L  *  L  V  C  *  *  N  K  W  Y  R  Y  M  *  N  L  I  Q  T  L  S  </second_frame>
            <third_frame>   Q  L  K  M  I  Y  N  T  L  N  *  D  F  F  L  L  F  L  T  L  L  I  A  L  T  *  L  *  L  L  F  C  C  *  K  K  *  I  Q  M  Q  K  *  *  L  F  H  Q  N  L  *  W  R  R  I  D  S  C  V  K  Y  A  T  R  V  S  K  E  I  K  T  Y  N  S  I  E  E  V  T  I  Y  H  G  N  *  N  K  E  I  T  K  K  L  *  R  K  K  F  I  F  V  L  K  N  H  V  Y  I  M  I  H  Q  E  H  *  V  I  *  L  G  L  K  N  I  T  Q  E  N  M  V  K  K  N  G  N  V  K  N  V  Q  K  N  M  Q  F  N  L  I  G  K  L  I  V  R  F  V  V  L  E  S  I  N  V  I  V  A  H  F  F  P  G  T  *  S  L  S  Q  F  T  *  H  I  L  H   : L  S  L  A  K  Y  *  M  *  L  W  Y  T  I  F  *  V  P  F  M  N  *  I  L  L  L  L  R  E  F  N  L  I  E  N  I  G  N  K  V  I  L  S  Y  D  *  F  V  D  E  I  N  G  I  D  I  C  E  I  *  F  K  L  Y  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11825" stop="12378"/>
                    <exon start="12670" stop="12682"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIENDIQHSKLRFFSSLFNSSNCSNITITSFLLLKKIDPNAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKKVYICPEKSCVHHDPSRALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRYVISVSIYVTHFTFVFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16859" PGL_stop="16333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16859" e_stop="16333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="16859" e_stop="16333" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16859" stop="16333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATTATTTGGTGGATTTTTTTTCTAGAGGTGACATTCTCAACTACTTTTTTTTTGGTGTCTTCAACATCGTACGATTCCAATTAAGTGAACGAAAAATCTAATAACCTATTAAAAAATCCTAGAATTATTATTATTTATTATTTTCAAACTTGGCCATCTCATGAGTTTGTTGCAAAAATAGCCTCTTTTCATTCCTTCCACCACCAAGAAAATCTCTTGTTAAGTTACCTTGCTTCCCTTTATCTTGCATCATCATCAAAGTATTTGCATTGTTAGCCACAAAAGTTGTTGAATTTGTAGCCCCTATTAGCAATCCATTATTTCCTTGAACATTTTCATGAATAGCCACATTTGAGGCACTTGATGATGAAGAACTATTCTTCATACTAAGGCTAGATGAGGTCATTAGCCCAAATTGATTGCTAAAGAGTGGTGAATTGTTGTTGCTCCTTGTTGATCCAATCTGGGCTGCTATTTGCAAAAGTGCTGTTGCTGACATGTGGCTATTATTGTAATACATTGGGC</gDNA_template>
            <first_frame> *  L  F  G  G  F  F  F  *  R  *  H  S  Q  L  L  F  F  W  C  L  Q  H  R  T  I  P  I  K  *  T  K  N  L  I  T  Y  *  K  I  L  E  L  L  L  F  I  I  F  K  L  G  H  L  M  S  L  L  Q  K  *  P  L  F  I  P  S  T  T  K  K  I  S  C  *  V  T  L  L  P  F  I  L  H  H  H  Q  S  I  C  I  V  S  H  K  S  C  *  I  C  S  P  Y  *  Q  S  I  I  S  L  N  I  F  M  N  S  H  I  *  G  T  *  *  *  R  T  I  L  H  T  K  A  R  *  G  H  *  P  K  L  I  A  K  E  W  *  I  V  V  A  P  C  *  S  N  L  G  C  Y  L  Q  K  C  C  C  *  H  V  A  I  I  V  I  H  W   </first_frame>
            <second_frame>  D  Y  L  V  D  F  F  S  R  G  D  I  L  N  Y  F  F  F  G  V  F  N  I  V  R  F  Q  L  S  E  R  K  I  *  *  P  I  K  K  S  *  N  Y  Y  Y  L  L  F  S  N  L  A  I  S  *  V  C  C  K  N  S  L  F  S  F  L  P  P  P  R  K  S  L  V  K  L  P  C  F  P  L  S  C  I  I  I  K  V  F  A  L  L  A  T  K  V  V  E  F  V  A  P  I  S  N  P  L  F  P  *  T  F  S  *  I  A  T  F  E  A  L  D  D  E  E  L  F  F  I  L  R  L  D  E  V  I  S  P  N  *  L  L  K  S  G  E  L  L  L  L  L  V  D  P  I  W  A  A  I  C  K  S  A  V  A  D  M  W  L  L  L  *  Y  I  G  </second_frame>
            <third_frame>   I  I  W  W  I  F  F  L  E  V  T  F  S  T  T  F  F  L  V  S  S  T  S  Y  D  S  N  *  V  N  E  K  S  N  N  L  L  K  N  P  R  I  I  I  I  Y  Y  F  Q  T  W  P  S  H  E  F  V  A  K  I  A  S  F  H  S  F  H  H  Q  E  N  L  L  L  S  Y  L  A  S  L  Y  L  A  S  S  S  K  Y  L  H  C  *  P  Q  K  L  L  N  L  *  P  L  L  A  I  H  Y  F  L  E  H  F  H  E  *  P  H  L  R  H  L  M  M  K  N  Y  S  S  Y  *  G  *  M  R  S  L  A  Q  I  D  C  *  R  V  V  N  C  C  C  S  L  L  I  Q  S  G  L  L  F  A  K  V  L  L  L  T  C  G  Y  Y  C  N  T  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23675" PGL_stop="21576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23675" e_stop="23119"/>
            <exon e_start="21989" e_stop="21576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23675" e_stop="23119" e_length="557"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23118" i_stop="21990" i_length="1129"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="21989" e_stop="21576" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23675" stop="23119"/>
              <exon start="21989" stop="21954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23674" stop="23119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23665" stop="23119"/>
              <exon start="21989" stop="21784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23659" stop="23152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23629" stop="23119"/>
              <exon start="21989" stop="21852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23629" stop="23119"/>
              <exon start="21989" stop="21951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23239" stop="23119"/>
              <exon start="21989" stop="21576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424879" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAACTACATCATTTCCTTCTTGAATTTTTTTTATTTTTTTTTAAAAAAATGAAACACCAAATTATTTTTTTAATTATTATCATCCTCCAATTTTCAACCTTAACACTATCTCAAACACCCCCTTCTGGTCCAACAAACATCACACAAATCCTAGAAAAAGCAGGCCAATTCACAACATTAATTAGACTAATGAAAGTATCACAAGTTAGTGATCAAATCAACACACAATTAAACAATTCAAATCAAGGGAATGGGATGACTATTTTTGCACCAACAGATAATGCATTTTCTAGCCTAAAATCAGGCACAATAAATACACTAAGTGCACAACAACAAGTTCAATTGGTGCAATTTCATGTTTTACCAAATTTCATTTCAATGTCACAATTTCAAACTATTAGTAACCCTTTGAGAACACAAGCTGGTGATTCTACTCCCGGAGACTTCCCGTTAAACGTAACGACGTCCGGTAATCAAGTCAATGTCTCTACCGGAGTTGATGATGCTACTATTGCTAACACAATTTATACTGATGGTCAGCTTGCTGTTTATCAG : GTTGATAAAGTGCTTCAACCTATGAGTATCTTTGCTGCTCCGGCTCCGGCAATGGCACCGACTCCGGCAACGTTGAAACCAAAGAGCAAGTCTCCGGCAGGATTGAACCCTACCTCCGGCAACGACGACTTGCCGGCGGCGGATGATTCCGGTGTTGAGAGGATTGCCATGCACGGCACAACGGTTTTGTTTTTTGGAATTTCTTTGTTTGTAGTGTTGTAAATTTTAGAAAATGCGGTGAGGATTCGTTGTGATTTTTTTGATGAGTTGATTCAACGGTTGTGATTCATTTGAATAATTACCATTTCATTTCAAATTCTTCTTTTTTATGTTTTTATTTTTTTTACCTTTTATTATTTTTGGGTATATTCATCTATGTAAACTACTAAGAAACAATTTTTTGATGTATCTACA</gDNA_template>
            <first_frame> K  N  Y  I  I  S  F  L  N  F  F  Y  F  F  L  K  K  *  N  T  K  L  F  F  *  L  L  S  S  S  N  F  Q  P  *  H  Y  L  K  H  P  L  L  V  Q  Q  T  S  H  K  S  *  K  K  Q  A  N  S  Q  H  *  L  D  *  *  K  Y  H  K  L  V  I  K  S  T  H  N  *  T  I  Q  I  K  G  M  G  *  L  F  L  H  Q  Q  I  M  H  F  L  A  *  N  Q  A  Q  *  I  H  *  V  H  N  N  K  F  N  W  C  N  F  M  F  Y  Q  I  S  F  Q  C  H  N  F  K  L  L  V  T  L  *  E  H  K  L  V  I  L  L  P  E  T  S  R  *  T  *  R  R  P  V  I  K  S  M  S  L  P  E  L  M  M  L  L  L  L  T  Q  F  I  L  M  V  S  L  L  F  I  R :   L  I  K  C  F  N  L  *  V  S  L  L  L  R  L  R  Q  W  H  R  L  R  Q  R  *  N  Q  R  A  S  L  R  Q  D  *  T  L  P  P  A  T  T  T  C  R  R  R  M  I  P  V  L  R  G  L  P  C  T  A  Q  R  F  C  F  L  E  F  L  C  L  *  C  C  K  F  *  K  M  R  *  G  F  V  V  I  F  L  M  S  *  F  N  G  C  D  S  F  E  *  L  P  F  H  F  K  F  F  F  F  M  F  L  F  F  L  P  F  I  I  F  G  Y  I  H  L  C  K  L  L  R  N  N  F  L  M  Y  L   </first_frame>
            <second_frame>  R  T  T  S  F  P  S  *  I  F  F  I  F  F  *  K  N  E  T  P  N  Y  F  F  N  Y  Y  H  P  P  I  F  N  L  N  T  I  S  N  T  P  F  W  S  N  K  H  H  T  N  P  R  K  S  R  P  I  H  N  I  N  *  T  N  E  S  I  T  S  *  *  S  N  Q  H  T  I  K  Q  F  K  S  R  E  W  D  D  Y  F  C  T  N  R  *  C  I  F  *  P  K  I  R  H  N  K  Y  T  K  C  T  T  T  S  S  I  G  A  I  S  C  F  T  K  F  H  F  N  V  T  I  S  N  Y  *  *  P  F  E  N  T  S  W  *  F  Y  S  R  R  L  P  V  K  R  N  D  V  R  *  S  S  Q  C  L  Y  R  S  *  *  C  Y  Y  C  *  H  N  L  Y  *  W  S  A  C  C  L  S   : G  *  *  S  A  S  T  Y  E  Y  L  C  C  S  G  S  G  N  G  T  D  S  G  N  V  E  T  K  E  Q  V  S  G  R  I  E  P  Y  L  R  Q  R  R  L  A  G  G  G  *  F  R  C  *  E  D  C  H  A  R  H  N  G  F  V  F  W  N  F  F  V  C  S  V  V  N  F  R  K  C  G  E  D  S  L  *  F  F  *  *  V  D  S  T  V  V  I  H  L  N  N  Y  H  F  I  S  N  S  S  F  L  C  F  Y  F  F  Y  L  L  L  F  L  G  I  F  I  Y  V  N  Y  *  E  T  I  F  *  C  I  Y  </second_frame>
            <third_frame>   E  L  H  H  F  L  L  E  F  F  L  F  F  F  K  K  M  K  H  Q  I  I  F  L  I  I  I  I  L  Q  F  S  T  L  T  L  S  Q  T  P  P  S  G  P  T  N  I  T  Q  I  L  E  K  A  G  Q  F  T  T  L  I  R  L  M  K  V  S  Q  V  S  D  Q  I  N  T  Q  L  N  N  S  N  Q  G  N  G  M  T  I  F  A  P  T  D  N  A  F  S  S  L  K  S  G  T  I  N  T  L  S  A  Q  Q  Q  V  Q  L  V  Q  F  H  V  L  P  N  F  I  S  M  S  Q  F  Q  T  I  S  N  P  L  R  T  Q  A  G  D  S  T  P  G  D  F  P  L  N  V  T  T  S  G  N  Q  V  N  V  S  T  G  V  D  D  A  T  I  A  N  T  I  Y  T  D  G  Q  L  A  V  Y  Q  :  V  D  K  V  L  Q  P  M  S  I  F  A  A  P  A  P  A  M  A  P  T  P  A  T  L  K  P  K  S  K  S  P  A  G  L  N  P  T  S  G  N  D  D  L  P  A  A  D  D  S  G  V  E  R  I  A  M  H  G  T  T  V  L  F  F  G  I  S  L  F  V  V  L  *  I  L  E  N  A  V  R  I  R  C  D  F  F  D  E  L  I  Q  R  L  *  F  I  *  I  I  T  I  S  F  Q  I  L  L  F  Y  V  F  I  F  F  T  F  Y  Y  F  W  V  Y  S  S  M  *  T  T  K  K  Q  F  F  D  V  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23673" stop="23119"/>
                    <exon start="21989" stop="21768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELHHFLLEFFLFFFKKMKHQIIFLIIIILQFSTLTLSQTPPSGPTNITQILEKAGQFTTLIRLMKVSQVSDQINTQLNNSNQGNGMTIFAPTDNAFSSLKSGTINTLSAQQQVQLVQFHVLPNFISMSQFQTISNPLRTQAGDSTPGDFPLNVTTSGNQVNVSTGVDDATIANTIYTDGQLAVYQVDKVLQPMSIFAAPAPAMAPTPATLKPKSKSPAGLNPTSGNDDLPAADDSGVERIAMHGTTVLFFGISLFVVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21588" PGL_stop="21990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21588" e_stop="21990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="21588" e_stop="21990" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21588" stop="21990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATTGTTTCTTAGTAGTTTACATAGATGAATATACCCAAAAATAATAAAAGGTAAAAAAAATAAAAACATAAAAAAGAAGAATTTGAAATGAAATGGTAATTATTCAAATGAATCACAACCGTTGAATCAACTCATCAAAAAAATCACAACGAATCCTCACCGCATTTTCTAAAATTTACAACACTACAAACAAAGAAATTCCAAAAAACAAAACCGTTGTGCCGTGCATGGCAATCCTCTCAACACCGGAATCATCCGCCGCCGGCAAGTCGTCGTTGCCGGAGGTAGGGTTCAATCCTGCCGGAGACTTGCTCTTTGGTTTCAACGTTGCCGGAGTCGGTGCCATTGCCGGAGCCGGAGCAGCAAAGATACTCATAGGTTGAAGCACTTTATCAACC</gDNA_template>
            <first_frame> K  K  L  F  L  S  S  L  H  R  *  I  Y  P  K  I  I  K  G  K  K  N  K  N  I  K  K  K  N  L  K  *  N  G  N  Y  S  N  E  S  Q  P  L  N  Q  L  I  K  K  I  T  T  N  P  H  R  I  F  *  N  L  Q  H  Y  K  Q  R  N  S  K  K  Q  N  R  C  A  V  H  G  N  P  L  N  T  G  I  I  R  R  R  Q  V  V  V  A  G  G  R  V  Q  S  C  R  R  L  A  L  W  F  Q  R  C  R  S  R  C  H  C  R  S  R  S  S  K  D  T  H  R  L  K  H  F  I  N  </first_frame>
            <second_frame>  K  N  C  F  L  V  V  Y  I  D  E  Y  T  Q  K  *  *  K  V  K  K  I  K  T  *  K  R  R  I  *  N  E  M  V  I  I  Q  M  N  H  N  R  *  I  N  S  S  K  K  S  Q  R  I  L  T  A  F  S  K  I  Y  N  T  T  N  K  E  I  P  K  N  K  T  V  V  P  C  M  A  I  L  S  T  P  E  S  S  A  A  G  K  S  S  L  P  E  V  G  F  N  P  A  G  D  L  L  F  G  F  N  V  A  G  V  G  A  I  A  G  A  G  A  A  K  I  L  I  G  *  S  T  L  S  T </second_frame>
            <third_frame>   K  I  V  S  *  *  F  T  *  M  N  I  P  K  N  N  K  R  *  K  K  *  K  H  K  K  E  E  F  E  M  K  W  *  L  F  K  *  I  T  T  V  E  S  T  H  Q  K  N  H  N  E  S  S  P  H  F  L  K  F  T  T  L  Q  T  K  K  F  Q  K  T  K  P  L  C  R  A  W  Q  S  S  Q  H  R  N  H  P  P  P  A  S  R  R  C  R  R  *  G  S  I  L  P  E  T  C  S  L  V  S  T  L  P  E  S  V  P  L  P  E  P  E  Q  Q  R  Y  S  *  V  E  A  L  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21718" stop="21975"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSSKKSQRILTAFSKIYNTTNKEIPKNKTVVPCMAILSTPESSAAGKSSLPEVGFNPAGDLLFGFNVAGVGAIAGAGAAKILIG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21765" stop="21989"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQHYKQRNSKKQNRCAVHGNPLNTGIIRRRQVVVAGGRVQSCRRLALWFQRCRSRCHCRSRSSKDTHRLKHFIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30509" PGL_stop="27351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30509" e_stop="30091"/>
            <exon e_start="29993" e_stop="29819"/>
            <exon e_start="29768" e_stop="29764"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.928" acc_prob="0.706" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30509" e_stop="30091" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29993" e_stop="29819" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.706">
            <gDNA_intron_boundary i_start="29818" i_stop="29769" i_length="50"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="29768" e_stop="29764" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30509" stop="30091"/>
              <exon start="29993" stop="29819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30509" stop="30091"/>
              <exon start="29993" stop="29846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30240" stop="30091"/>
              <exon start="29993" stop="29819"/>
              <exon start="29768" stop="29764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30185" stop="30091"/>
              <exon start="29993" stop="29910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612135" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG : AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG : ATACG</gDNA_template>
            <first_frame> A  R  D  *  P  H  P  L  P  S  Y  *  Y  *  *  F  F  L  I  S  T  *  H  K  R  D  *  I  *  I  Q  A  N  K  V  Y  M  N  *  *  M  L  S  N  M  C  T  L  Y  G  R  K  I  V  V  T  N  H  *  T  L  L  A  T  F  T  T  I  A  I  K  F  F  R  V  S  I  Y  L  T  L  L  F  R  T  P  S  H  K  K  H  H  N  L  L  *  F  S  L  K  I  V  Q  K  R  S  H  R  Q  A  W  S  Q  V  F  C  W  V  K  M  I  Q  S  V  C  V  R  A  S  A  L  P  L  P  P  I  D  S  H  R :   N  A  A  M  A  N  S  F  A  I  D  A  Q  N  L  S  Y  S  V  V  S  K  Q  G  K  I  L  P  I  L  K  D  C  S  L  Q  V  P  S  G  Q  F  W  M  L  L  G  P  N  G  C  G  K  S  T  L  L  K  :  I   </first_frame>
            <second_frame>  R  E  I  S  L  I  P  S  P  L  I  S  I  S  S  F  F  *  F  L  L  N  I  S  V  I  K  F  K  F  K  L  T  K  F  T  *  I  D  K  C  F  R  T  C  A  L  Y  T  D  G  K  *  *  L  L  I  T  K  L  C  *  L  P  L  L  R  *  Q  *  S  F  F  V  F  Q  F  I  *  H  S  Y  S  E  H  L  H  I  K  N  I  I  I  Y  Y  N  F  L  *  K  L  F  K  K  E  A  I  D  K  L  G  V  K  F  F  V  G  *  K  *  Y  N  L  F  V  F  E  L  Q  L  C  H  C  H  P  L  I  L  T   : E  M  P  Q  W  Q  T  V  L  Q  L  M  L  K  I  L  A  I  Q  L  S  Q  N  K  E  K  Y  F  Q  F  L  K  I  V  H  Y  K  F  L  L  D  N  S  G  C  F  W  D  L  M  V  V  E  N  Q  P  F  *  R :   Y  </second_frame>
            <third_frame>   E  R  L  A  S  S  P  P  L  L  L  V  L  V  V  F  S  D  F  Y  L  T  *  A  *  L  N  L  N  S  S  *  Q  S  L  H  E  L  I  N  A  F  E  H  V  H  F  I  R  T  E  N  S  S  Y  *  S  L  N  F  A  S  Y  L  Y  Y  D  S  N  K  V  F  S  C  F  N  L  F  D  T  L  I  P  N  T  F  T  *  K  T  S  *  F  T  I  I  F  F  K  N  C  S  K  K  K  P  *  T  S  L  E  S  S  F  L  L  G  K  N  D  T  I  C  L  C  S  S  F  S  S  A  I  A  T  H  *  F  S  Q  :  K  C  R  N  G  K  Q  F  C  N  *  C  S  K  S  *  L  F  S  C  L  K  T  R  K  N  T  S  N  S  *  R  L  F  T  T  S  S  F  W  T  I  L  D  A  F  G  T  *  W  L  W  K  I  N  P  F  K   : D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30221" stop="30091"/>
                    <exon start="29993" stop="29819"/>
                    <exon start="29768" stop="29766"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKIVQKRSHRQAWSQVFCWVKMIQSVCVRASALPLPPIDSHRNAAMANSFAIDAQNLSYSVVSKQGKILPILKDCSLQVPSGQFWMLLGPNGCGKSTLLKI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30148" stop="30091"/>
                    <exon start="29993" stop="29821"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNLFVFELQLCHCHPLILTEMPQWQTVLQLMLKILAIQLSQNKEKYFQFLKIVHYKFLLDNSGCFWDLMVVENQPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30509" e_stop="30091"/>
            <exon e_start="29993" e_stop="29819"/>
            <exon e_start="28965" e_stop="28879"/>
            <exon e_start="27476" e_stop="27351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.988" e_score="0.998"/>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="0.989"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="30509" e_stop="30091" e_length="419"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30090" i_stop="29994" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29993" e_stop="29819" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29818" i_stop="28966" i_length="853"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="28965" e_stop="28879" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28878" i_stop="27477" i_length="1402"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="27476" e_stop="27351" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30509" stop="30091"/>
              <exon start="29993" stop="29819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30509" stop="30091"/>
              <exon start="29993" stop="29846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30233" stop="30091"/>
              <exon start="29993" stop="29819"/>
              <exon start="28965" stop="28879"/>
              <exon start="27476" stop="27351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30185" stop="30091"/>
              <exon start="29993" stop="29910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612135" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGAGATTAGCCTCATCCCCTCCCCTCTTATTAGTATTAGTAGTTTTTTCTGATTTCTACTTAACATAAGCGTGATTAAATTTAAATTCAAGCTAACAAAGTTTACATGAATTGATAAATGCTTTCGAACATGTGCACTTTATACGGACGGAAAATAGTAGTTACTAATCACTAAACTTTGCTAGCTACCTTTACTACGATAGCAATAAAGTTTTTTCGTGTTTCAATTTATTTGACACTCTTATTCCGAACACCTTCACATAAAAAACATCATAATTTACTATAATTTTCTTTAAAAATTGTTCAAAAAAGAAGCCATAGACAAGCTTGGAGTCAAGTTTTTTGTTGGGTAAAAATGATACAATCTGTTTGTGTTCGAGCTTCAGCTCTGCCATTGCCACCCATTGATTCTCACAG : AAATGCCGCAATGGCAAACAGTTTTGCAATTGATGCTCAAAATCTTAGCTATTCAGTTGTCTCAAAACAAGGAAAAATACTTCCAATTCTTAAAGATTGTTCACTACAAGTTCCTTCTGGACAATTCTGGATGCTTTTGGGACCTAATGGTTGTGGAAAATCAACCCTTTTAAAG : ATATTAGCAGGTCTATTGAGTCCAGATGATGGTTTCTTGTATGTGGAGAGGCCAAGGAGCTTTGTGTATCAGAATCCTGATCATCAG : GTCGTGATGCCAACAGTGGAAGCTGATGTCGCTTTTGGTCTTGGTAAATTGAACTTAACACCAAATGAGATTAAGACTAGGGTGGCAAAAGCTTTGGATGCAGTTGGGATGTATGAATATTTGAAA</gDNA_template>
            <first_frame> A  R  D  *  P  H  P  L  P  S  Y  *  Y  *  *  F  F  L  I  S  T  *  H  K  R  D  *  I  *  I  Q  A  N  K  V  Y  M  N  *  *  M  L  S  N  M  C  T  L  Y  G  R  K  I  V  V  T  N  H  *  T  L  L  A  T  F  T  T  I  A  I  K  F  F  R  V  S  I  Y  L  T  L  L  F  R  T  P  S  H  K  K  H  H  N  L  L  *  F  S  L  K  I  V  Q  K  R  S  H  R  Q  A  W  S  Q  V  F  C  W  V  K  M  I  Q  S  V  C  V  R  A  S  A  L  P  L  P  P  I  D  S  H  R :   N  A  A  M  A  N  S  F  A  I  D  A  Q  N  L  S  Y  S  V  V  S  K  Q  G  K  I  L  P  I  L  K  D  C  S  L  Q  V  P  S  G  Q  F  W  M  L  L  G  P  N  G  C  G  K  S  T  L  L  K  :  I  L  A  G  L  L  S  P  D  D  G  F  L  Y  V  E  R  P  R  S  F  V  Y  Q  N  P  D  H  Q  :  V  V  M  P  T  V  E  A  D  V  A  F  G  L  G  K  L  N  L  T  P  N  E  I  K  T  R  V  A  K  A  L  D  A  V  G  M  Y  E  Y  L  K </first_frame>
            <second_frame>  R  E  I  S  L  I  P  S  P  L  I  S  I  S  S  F  F  *  F  L  L  N  I  S  V  I  K  F  K  F  K  L  T  K  F  T  *  I  D  K  C  F  R  T  C  A  L  Y  T  D  G  K  *  *  L  L  I  T  K  L  C  *  L  P  L  L  R  *  Q  *  S  F  F  V  F  Q  F  I  *  H  S  Y  S  E  H  L  H  I  K  N  I  I  I  Y  Y  N  F  L  *  K  L  F  K  K  E  A  I  D  K  L  G  V  K  F  F  V  G  *  K  *  Y  N  L  F  V  F  E  L  Q  L  C  H  C  H  P  L  I  L  T   : E  M  P  Q  W  Q  T  V  L  Q  L  M  L  K  I  L  A  I  Q  L  S  Q  N  K  E  K  Y  F  Q  F  L  K  I  V  H  Y  K  F  L  L  D  N  S  G  C  F  W  D  L  M  V  V  E  N  Q  P  F  *  R :   Y  *  Q  V  Y  *  V  Q  M  M  V  S  C  M  W  R  G  Q  G  A  L  C  I  R  I  L  I  I  R :   S  *  C  Q  Q  W  K  L  M  S  L  L  V  L  V  N  *  T  *  H  Q  M  R  L  R  L  G  W  Q  K  L  W  M  Q  L  G  C  M  N  I  *   </second_frame>
            <third_frame>   E  R  L  A  S  S  P  P  L  L  L  V  L  V  V  F  S  D  F  Y  L  T  *  A  *  L  N  L  N  S  S  *  Q  S  L  H  E  L  I  N  A  F  E  H  V  H  F  I  R  T  E  N  S  S  Y  *  S  L  N  F  A  S  Y  L  Y  Y  D  S  N  K  V  F  S  C  F  N  L  F  D  T  L  I  P  N  T  F  T  *  K  T  S  *  F  T  I  I  F  F  K  N  C  S  K  K  K  P  *  T  S  L  E  S  S  F  L  L  G  K  N  D  T  I  C  L  C  S  S  F  S  S  A  I  A  T  H  *  F  S  Q  :  K  C  R  N  G  K  Q  F  C  N  *  C  S  K  S  *  L  F  S  C  L  K  T  R  K  N  T  S  N  S  *  R  L  F  T  T  S  S  F  W  T  I  L  D  A  F  G  T  *  W  L  W  K  I  N  P  F  K   : D  I  S  R  S  I  E  S  R  *  W  F  L  V  C  G  E  A  K  E  L  C  V  S  E  S  *  S  S   : G  R  D  A  N  S  G  S  *  C  R  F  W  S  W  *  I  E  L  N  T  K  *  D  *  D  *  G  G  K  S  F  G  C  S  W  D  V  *  I  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30221" stop="30091"/>
                    <exon start="29993" stop="29819"/>
                    <exon start="28965" stop="28879"/>
                    <exon start="27476" stop="27351"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKIVQKRSHRQAWSQVFCWVKMIQSVCVRASALPLPPIDSHRNAAMANSFAIDAQNLSYSVVSKQGKILPILKDCSLQVPSGQFWMLLGPNGCGKSTLLKILAGLLSPDDGFLYVERPRSFVYQNPDHQVVMPTVEADVAFGLGKLNLTPNEIKTRVAKALDAVGMYEYLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38018" PGL_stop="48907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38018" e_stop="38712"/>
            <exon e_start="38789" e_stop="38884"/>
            <exon e_start="39692" e_stop="39804"/>
            <exon e_start="39895" e_stop="39961"/>
            <exon e_start="40043" e_stop="40135"/>
            <exon e_start="40244" e_stop="40393"/>
            <exon e_start="40540" e_stop="40628"/>
            <exon e_start="40738" e_stop="40843"/>
            <exon e_start="40940" e_stop="41027"/>
            <exon e_start="41122" e_stop="41240"/>
            <exon e_start="41707" e_stop="41868"/>
            <exon e_start="41955" e_stop="42151"/>
            <exon e_start="42311" e_stop="42420"/>
            <exon e_start="42698" e_stop="42807"/>
            <exon e_start="42972" e_stop="43085"/>
            <exon e_start="43238" e_stop="43339"/>
            <exon e_start="43949" e_stop="44160"/>
            <exon e_start="44279" e_stop="44615"/>
            <exon e_start="44952" e_stop="45252"/>
            <exon e_start="47045" e_stop="47060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="0.902"/>
          <exon-intron don_prob="0.906" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.002" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.738" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="0.997"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="38018" e_stop="38712" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38713" i_stop="38788" i_length="76"/>
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          <exon e_serial="2" e_score="1.000">
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          <intron i_serial="2" don_prob="0.906" acc_prob="0.698">
            <gDNA_intron_boundary i_start="38885" i_stop="39691" i_length="807"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39692" e_stop="39804" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.924">
            <gDNA_intron_boundary i_start="39805" i_stop="39894" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39895" e_stop="39961" e_length="67"/>
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          <intron i_serial="4" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="39962" i_stop="40042" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40043" e_stop="40135" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40136" i_stop="40243" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="40244" e_stop="40393" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.968" acc_prob="0.002">
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          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40540" e_stop="40628" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.869" acc_prob="0.989">
            <gDNA_intron_boundary i_start="40629" i_stop="40737" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40738" e_stop="40843" e_length="106"/>
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          <intron i_serial="8" don_prob="0.738" acc_prob="0.950">
            <gDNA_intron_boundary i_start="40844" i_stop="40939" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40940" e_stop="41027" e_length="88"/>
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          <intron i_serial="9" don_prob="0.862" acc_prob="0.983">
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          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41122" e_stop="41240" e_length="119"/>
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          <intron i_serial="10" don_prob="0.996" acc_prob="0.956">
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          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41707" e_stop="41868" e_length="162"/>
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          <intron i_serial="11" don_prob="0.980" acc_prob="0.978">
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          <exon e_serial="12" e_score="1.000">
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          <intron i_serial="12" don_prob="0.983" acc_prob="0.975">
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          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="42311" e_stop="42420" e_length="110"/>
          </exon>
          <intron i_serial="13" don_prob="0.959" acc_prob="0.999">
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          </intron>
          <exon e_serial="14" e_score="1.000">
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          <intron i_serial="14" don_prob="0.996" acc_prob="0.953">
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          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="42972" e_stop="43085" e_length="114"/>
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          <intron i_serial="15" don_prob="0.815" acc_prob="0.981">
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          <exon e_serial="16" e_score="1.000">
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          <intron i_serial="16" don_prob="0.956" acc_prob="0.974">
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          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="43949" e_stop="44160" e_length="212"/>
          </exon>
          <intron i_serial="17" don_prob="0.880" acc_prob="0.961">
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          </intron>
          <exon e_serial="18" e_score="1.000">
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          </exon>
          <intron i_serial="18" don_prob="0.992" acc_prob="0.991">
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          </intron>
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          <intron i_serial="19" don_prob="0.000" acc_prob="0.909">
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          </intron>
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            <gDNA_exon_boundary e_start="47045" e_stop="47060" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38018" stop="38671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705856" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="38789" stop="38884"/>
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              <exon start="39895" stop="39961"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747539" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="40540" stop="40628"/>
              <exon start="40738" stop="40745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739974" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="40540" stop="40628"/>
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              <exon start="40940" stop="40965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245608" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="40318" stop="40393"/>
              <exon start="40540" stop="40628"/>
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              <exon start="40940" stop="41027"/>
              <exon start="41122" stop="41236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336421" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="40940" stop="41027"/>
              <exon start="41122" stop="41240"/>
              <exon start="41707" stop="41868"/>
              <exon start="41955" stop="42151"/>
              <exon start="42311" stop="42331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41707" stop="41868"/>
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              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="42993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343951" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41961" stop="42151"/>
              <exon start="42311" stop="42412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42000" stop="42151"/>
              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42040" stop="42151"/>
              <exon start="42311" stop="42420"/>
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              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42082" stop="42151"/>
              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42361" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
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              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
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              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43008" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43054" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44503" stop="44615"/>
              <exon start="44952" stop="45249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44505" stop="44615"/>
              <exon start="44952" stop="45252"/>
              <exon start="47045" stop="47060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44563" stop="44615"/>
              <exon start="44952" stop="45252"/>
              <exon start="47045" stop="47060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT : ATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG : TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG : TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG : GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG : ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT : ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG : GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG : TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG : GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATATAGAG : GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG : GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG : GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : ACAGAAAATAAACACT</gDNA_template>
            <first_frame> I  S  *  K  N  I  I  T  L  F  L  Y  I  F  L  Y  N  T  Q  K  W  L  K  C  L  L  A  *  C  F  E  P  T  I  L  N  T  L  Y  L  F  S  L  Y  N  S  Y  V  L  K  K  I  H  H  H  H  Q  Y  K  A  V  Q  Y  C  R  K  M  M  N  K  T  T  M  T  T  S  L  G  *  L  I  L  I  F  L  F  L  H  Y  *  L  S  C  R  L  R  L  M  I  T  S  S  S  S  L  T  I  C  F  L  F  Q  F  S  Y  F  *  A  N  F  *  K  L  Q  K  Q  K  K  K  N  S  K  S  S  V  S  N  R  V  L  L  C  T  L  F  W  V  *  I  I  L  G  F  F  F  F  C  I  S  *  S  E  N  *  R  F  L  A  G  K  W  K  E  E  V  G  I  V  Y  Q  L  *  C  *  C  L  E  W  F  S  C  I  V  W  *  *  R  H  L  P  L  M  *  R  M  I  T  G  H  W  L  L  T  E  G  E  E  F  *  S  P  V  Q  Y  I  I  L  G  V  L  L  I :   C  G  Q  T  L  Y  R  N  Q  K  M  E  D  W  M  L  *  R  L  M  F  S  G  T  F  M  N  L  F  E  I  S :   M  I  L  K  E  G  K  I  *  L  I  L  *  S  W  W  R  K  L  A  Y  L  F  I  *  G  L  G  L  M  F  V  Q  N  G  T  M   : V  G  F  L  F  G  C  I  S  F  L  E  L  N  F  E  P  T  M  N  R  S  R :   Q  K  *  S  D  S  Q  L  K  L  L  T  *  S  S  K  K  I  Y  M  H  P  R  V  G  R  L  S  C  L  R :   *  K  M  S  M  A  M  V  I  L  S  L  V  M  V  L  V  P  N  L  T  *  T  G  Q  H  Q  W  L  R  L  *  I  R  E  C  H  G  L  C  V  S  N  Q  M  P  L  L  P  L :   L  T  L  A  M  D  F  I  V  T  N  S  S  K  I  P  I  K  H  P  R  C  G  L  R  I  G  P  D   : G  F  C  R  L  V  V  L  S  L  T  D  Q  W  K  T  S  L  S  L  W  L  D  F  S  S  E  A  E  L  S  R  T  I  T  C :   T  T  G  E  L  T  L  G  E  P  V  V  D  R  L  L  Q  L  A  M  T  M  M  L  L  *  M  S  T  :  G  L  *  I  N  Q  N  G  V  T  *  K  I  S  I  K  P  *  S  F  V  R  L  Q  W  W  Q  Q  N  Q  T  S  L  L  W  A  L  I  *  R :   S  V  F  I  K  L  I  H  S  V  L  H  F  S  P  I  L  L  R  N  L  M  R  L  *  A  S  M  E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K  L  M  H  L  V  D  P  Y  Q  V  G  L  R  *  M  S  L  *  A  S  Q  M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  I  R :   L  D  *  K  E  K  I  W  A  Y  L  M  E  V  L  H  F  G  S  H  K  L  H  C  L  Q  T  N  H  *  Y  G  I  R :   Q  V  L  M  L  L  L  V  I  P  L  F  R  W  I  L  L  E  W  G  R  V  R  H  G  *  M  G  K  A  S  V  D  F  G  L  P  I  L  H  R  M  T  V  V  L  T  P  A  I  I  E  E  D  T  M  L  K  N  V  S  K  I  V  E  N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  T  E  N  K  H  </first_frame>
            <second_frame>  F  H  R  R  I  L  L  L  C  F  Y  T  F  S  Y  I  I  P  R  N  G  *  N  V  C  L  L  S  V  L  S  R  Q  Y  *  I  L  C  I  Y  F  H  Y  I  I  H  M  Y  *  K  K  F  I  I  I  I  S  I  K  P  S  S  T  A  E  K  *  *  T  K  R  R  *  Q  R  H  *  D  N  *  F  *  F  F  Y  F  Y  I  I  S  C  R  V  V  S  G  L  *  *  L  H  L  H  P  *  Q  F  V  S  F  F  S  F  H  T  F  K  Q  T  S  K  S  C  K  S  K  K  K  K  T  Q  K  A  L  F  L  T  E  Y  Y  S  V  H  C  F  G  Y  K  *  F  W  V  F  F  F  F  V  L  V  D  R  K  I  E  D  F  W  P  E  N  G  K  K  K  W  V  L  F  I  S  Y  N  V  S  V  W  S  G  F  L  A  L  F  G  D  D  V  I  C  R  *  C  D  V  *  S  P  G  I  G  C  *  R  K  E  K  S  F  D  L  R  F  N  T  L  S  S  E  Y  S  *   : Y  V  A  R  P  Y  T  E  I  K  R  W  R  I  G  C  Y  R  D  L  C  F  L  E  P  S  *  T  C  S  K  S   : V  *  F  *  R  K  E  R  F  D  *  F  C  E  V  G  G  E  S  W  L  I  C  S  Y  K  D  W  A  L  C  L  C  R  M  E  L  W  :  W  V  S  S  L  V  A  F  H  S  W  N  *  I  S  N  R  Q  *  T  V  Q   : G  R  N  E  A  I  H  S  *  N  C  *  H  D  Q  A  R  K  S  I  C  I  P  G  W  A  G  Y  L  V  S   : D  R  K  *  V  W  Q  W  *  Y  *  V  S  L  W  S  S  C  Q  T  L  R  E  L  G  S  I  N  G  Y  V  F  K  Y  G  S  A  M  G  Y  V  S  A  T  R  C  P  S  F  R   : Y  *  H  L  Q  W  I  L  L  *  P  I  Q  A  K  F  R  *  N  T  Q  D  V  D  *  E  L  D  R  M  :  V  S  V  V  W  W  S  C  P  L  Q  T  S  G  R  H  R  F  R  C  G  S  I  F  P  A  R  R  N  F  P  E  L  L  H   : V  P  R  G  N  *  L  W  E  N  Q  W  W  T  V  Y  C  N  *  L  *  L  *  C  S  F  R  *  V  R :   A  Y  K  S  T  K  M  G  S  L  E  R  S  P  *  S  H  K  A  L  *  G  C  N  G  G  N  R  T  K  H  H  F  S  G  L  *  Y  R   : G  Q  C  L  *  N  *  F  T  V  C  C  I  S  R  Q  Y  C  Y  A  I  *  C  G  C  E  L  Q  W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G  S  *  C  I  W  W  I  P  I  R  L  D  F  G  E  *  A  C  R  H  L  K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I  S   : G  W  I  E  R  R  R  F  G  L  I  *  W  R  F  Y  T  L  E  V  T  N  C  I  A  Y  K  P  T  I  N  M  V  *   : G  K  F  *  C  S  C  W  *  Y  P  S  F  D  G  F  Y  W  N  G  E  G  *  G  M  G  E  W  A  K  H  R  S  I  L  A  C  L  Y  C  T  E  *  R  L  Y  *  P  L  Q  L  *  R  R  I  Q  C  *  K  M  S  Q  K  L  W  K  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   Q  K  I  N  T </second_frame>
            <third_frame>   F  I  E  E  Y  Y  Y  S  V  F  I  H  F  L  I  *  Y  P  E  M  A  K  M  F  A  C  L  V  F  *  A  D  N  T  K  Y  S  V  F  I  F  I  I  *  F  I  C  I  E  K  N  S  S  S  S  S  V  *  S  R  P  V  L  Q  K  N  D  E  Q  N  D  D  D  N  V  I  R  I  I  N  F  N  F  F  I  F  T  L  L  V  V  V  S  S  P  A  Y  D  N  F  I  F  I  L  N  N  L  F  P  F  S  V  F  I  L  L  S  K  L  L  K  A  A  K  A  K  K  K  K  L  K  K  L  C  F  *  Q  S  I  T  L  Y  I  V  L  G  I  N  N  F  G  F  F  F  F  L  Y  *  L  I  G  K  L  K  I  F  G  R  K  M  E  R  R  S  G  Y  C  L  S  V  I  M  L  V  F  G  V  V  F  L  H  C  L  V  M  T  S  F  A  A  N  V  T  Y  D  H  R  A  L  V  V  D  G  R  R  R  V  L  I  S  G  S  I  H  Y  P  R  S  T  P  D  :  M  W  P  D  L  I  Q  K  S  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  V  R  N  Q  :  Y  D  F  E  G  R  K  D  L  I  N  F  V  K  L  V  E  K  A  G  L  F  V  H  I  R  I  G  P  Y  V  C  A  E  W  N  Y  G :   G  F  P  L  W  L  H  F  I  P  G  I  E  F  R  T  D  N  E  P  F  K  :  A  E  M  K  R  F  T  A  K  I  V  D  M  I  K  Q  E  N  L  Y  A  S  Q  G  G  P  V  I  L  S  Q  :  I  E  N  E  Y  G  N  G  D  I  E  S  R  Y  G  P  R  A  K  P  Y  V  N  W  A  A  S  M  A  T  S  L  N  T  G  V  P  W  V  M  C  Q  Q  P  D  A  P  P  S  V  :  I  N  T  C  N  G  F  Y  C  D  Q  F  K  Q  N  S  D  K  T  P  K  M  W  T  E  N  W  T  G  W :   F  L  S  F  G  G  P  V  P  Y  R  P  V  E  D  I  A  F  A  V  A  R  F  F  Q  R  G  G  T  F  Q  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  S  G  G  P  F  I  A  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  I  N  Q  P  K  W  G  H  L  K  D  L  H  K  A  I  K  L  C  E  A  A  M  V  A  T  E  P  N  I  T  S  L  G  S  N  I  E  :  V  S  V  Y  K  T  D  S  Q  C  A  A  F  L  A  N  T  A  T  Q  S  D  A  A  V  S  F  N  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  A  D  A  S  G  G  S  L  S  G  W  T  S  V  N  E  P  V  G  I  S  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T  Y  Q  :  V  G  L  K  G  E  D  L  G  L  S  N  G  G  S  T  L  W  K  S  Q  T  A  L  P  T  N  Q  P  L  I  W  Y  K  :  A  S  F  D  A  P  A  G  D  T  P  L  S  M  D  F  T  G  M  G  K  G  E  A  W  V  N  G  Q  S  I  G  R  F  W  P  A  Y  I  A  P  N  D  G  C  T  D  P  C  N  Y  R  G  G  Y  N  A  E  K  C  L  K  N  C  G  K  P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : N  R  K  *  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38494" stop="38712"/>
                    <exon start="38789" stop="38884"/>
                    <exon start="39692" stop="39804"/>
                    <exon start="39895" stop="39961"/>
                    <exon start="40043" stop="40135"/>
                    <exon start="40244" stop="40393"/>
                    <exon start="40540" stop="40628"/>
                    <exon start="40738" stop="40843"/>
                    <exon start="40940" stop="41027"/>
                    <exon start="41122" stop="41240"/>
                    <exon start="41707" stop="41868"/>
                    <exon start="41955" stop="42151"/>
                    <exon start="42311" stop="42420"/>
                    <exon start="42698" stop="42807"/>
                    <exon start="42972" stop="43085"/>
                    <exon start="43238" stop="43339"/>
                    <exon start="43949" stop="44160"/>
                    <exon start="44279" stop="44615"/>
                    <exon start="44952" stop="45059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2589</number_coding_nucleotides>
                  <number_encoded_amino_acids>863</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGKLKIFGRKMERRSGYCLSVIMLVFGVVFLHCLVMTSFAANVTYDHRALVVDGRRRVLISGSIHYPRSTPDMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYDFEGRKDLINFVKLVEKAGLFVHIRIGPYVCAEWNYGGFPLWLHFIPGIEFRTDNEPFKAEMKRFTAKIVDMIKQENLYASQGGPVILSQIENEYGNGDIESRYGPRAKPYVNWAASMATSLNTGVPWVMCQQPDAPPSVINTCNGFYCDQFKQNSDKTPKMWTENWTGWFLSFGGPVPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFIATSYDYDAPLDEYGLINQPKWGHLKDLHKAIKLCEAAMVATEPNITSLGSNIEVSVYKTDSQCAAFLANTATQSDAAVSFNGNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSEADASGGSLSGWTSVNEPVGISNENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWTYQVGLKGEDLGLSNGGSTLWKSQTALPTNQPLIWYKASFDAPAGDTPLSMDFTGMGKGEAWVNGQSIGRFWPAYIAPNDGCTDPCNYRGGYNAEKCLKNCGKPSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38194" stop="38427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPVLQKNDEQNDDDNVIRIINFNFFIFTLLVVVSSPAYDNFIFILNNLFPFSVFILLSKLLKAAKAKKKKLKKLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38018" e_stop="38712"/>
            <exon e_start="38789" e_stop="38884"/>
            <exon e_start="39692" e_stop="39804"/>
            <exon e_start="39895" e_stop="39961"/>
            <exon e_start="40043" e_stop="40135"/>
            <exon e_start="40244" e_stop="40393"/>
            <exon e_start="40540" e_stop="40628"/>
            <exon e_start="40738" e_stop="40843"/>
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          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT : ATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG : TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG : TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG : GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG : ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT : ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG : GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG : TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG : GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATATAGAG : GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG : GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG : GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATACTTTT</gDNA_template>
            <first_frame> I  S  *  K  N  I  I  T  L  F  L  Y  I  F  L  Y  N  T  Q  K  W  L  K  C  L  L  A  *  C  F  E  P  T  I  L  N  T  L  Y  L  F  S  L  Y  N  S  Y  V  L  K  K  I  H  H  H  H  Q  Y  K  A  V  Q  Y  C  R  K  M  M  N  K  T  T  M  T  T  S  L  G  *  L  I  L  I  F  L  F  L  H  Y  *  L  S  C  R  L  R  L  M  I  T  S  S  S  S  L  T  I  C  F  L  F  Q  F  S  Y  F  *  A  N  F  *  K  L  Q  K  Q  K  K  K  N  S  K  S  S  V  S  N  R  V  L  L  C  T  L  F  W  V  *  I  I  L  G  F  F  F  F  C  I  S  *  S  E  N  *  R  F  L  A  G  K  W  K  E  E  V  G  I  V  Y  Q  L  *  C  *  C  L  E  W  F  S  C  I  V  W  *  *  R  H  L  P  L  M  *  R  M  I  T  G  H  W  L  L  T  E  G  E  E  F  *  S  P  V  Q  Y  I  I  L  G  V  L  L  I :   C  G  Q  T  L  Y  R  N  Q  K  M  E  D  W  M  L  *  R  L  M  F  S  G  T  F  M  N  L  F  E  I  S :   M  I  L  K  E  G  K  I  *  L  I  L  *  S  W  W  R  K  L  A  Y  L  F  I  *  G  L  G  L  M  F  V  Q  N  G  T  M   : V  G  F  L  F  G  C  I  S  F  L  E  L  N  F  E  P  T  M  N  R  S  R :   Q  K  *  S  D  S  Q  L  K  L  L  T  *  S  S  K  K  I  Y  M  H  P  R  V  G  R  L  S  C  L  R :   *  K  M  S  M  A  M  V  I  L  S  L  V  M  V  L  V  P  N  L  T  *  T  G  Q  H  Q  W  L  R  L  *  I  R  E  C  H  G  L  C  V  S  N  Q  M  P  L  L  P  L :   L  T  L  A  M  D  F  I  V  T  N  S  S  K  I  P  I  K  H  P  R  C  G  L  R  I  G  P  D   : G  F  C  R  L  V  V  L  S  L  T  D  Q  W  K  T  S  L  S  L  W  L  D  F  S  S  E  A  E  L  S  R  T  I  T  C :   T  T  G  E  L  T  L  G  E  P  V  V  D  R  L  L  Q  L  A  M  T  M  M  L  L  *  M  S  T  :  G  L  *  I  N  Q  N  G  V  T  *  K  I  S  I  K  P  *  S  F  V  R  L  Q  W  W  Q  Q  N  Q  T  S  L  L  W  A  L  I  *  R :   S  V  F  I  K  L  I  H  S  V  L  H  F  S  P  I  L  L  R  N  L  M  R  L  *  A  S  M  E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K  L  M  H  L  V  D  P  Y  Q  V  G  L  R  *  M  S  L  *  A  S  Q  M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  I  R :   L  D  *  K  E  K  I  W  A  Y  L  M  E  V  L  H  F  G  S  H  K  L  H  C  L  Q  T  N  H  *  Y  G  I  R :   Q  V  L  M  L  L  L  V  I  P  L  F  R  W  I  L  L  E  W  G  R  V  R  H  G  *  M  G  K  A  S  V  D  F  G  L  P  I  L  H  R  M  T  V  V  L  T  P  A  I  I  E  E  D  T  M  L  K  N  V  S  K  I  V  E  N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  L   </first_frame>
            <second_frame>  F  H  R  R  I  L  L  L  C  F  Y  T  F  S  Y  I  I  P  R  N  G  *  N  V  C  L  L  S  V  L  S  R  Q  Y  *  I  L  C  I  Y  F  H  Y  I  I  H  M  Y  *  K  K  F  I  I  I  I  S  I  K  P  S  S  T  A  E  K  *  *  T  K  R  R  *  Q  R  H  *  D  N  *  F  *  F  F  Y  F  Y  I  I  S  C  R  V  V  S  G  L  *  *  L  H  L  H  P  *  Q  F  V  S  F  F  S  F  H  T  F  K  Q  T  S  K  S  C  K  S  K  K  K  K  T  Q  K  A  L  F  L  T  E  Y  Y  S  V  H  C  F  G  Y  K  *  F  W  V  F  F  F  F  V  L  V  D  R  K  I  E  D  F  W  P  E  N  G  K  K  K  W  V  L  F  I  S  Y  N  V  S  V  W  S  G  F  L  A  L  F  G  D  D  V  I  C  R  *  C  D  V  *  S  P  G  I  G  C  *  R  K  E  K  S  F  D  L  R  F  N  T  L  S  S  E  Y  S  *   : Y  V  A  R  P  Y  T  E  I  K  R  W  R  I  G  C  Y  R  D  L  C  F  L  E  P  S  *  T  C  S  K  S   : V  *  F  *  R  K  E  R  F  D  *  F  C  E  V  G  G  E  S  W  L  I  C  S  Y  K  D  W  A  L  C  L  C  R  M  E  L  W  :  W  V  S  S  L  V  A  F  H  S  W  N  *  I  S  N  R  Q  *  T  V  Q   : G  R  N  E  A  I  H  S  *  N  C  *  H  D  Q  A  R  K  S  I  C  I  P  G  W  A  G  Y  L  V  S   : D  R  K  *  V  W  Q  W  *  Y  *  V  S  L  W  S  S  C  Q  T  L  R  E  L  G  S  I  N  G  Y  V  F  K  Y  G  S  A  M  G  Y  V  S  A  T  R  C  P  S  F  R   : Y  *  H  L  Q  W  I  L  L  *  P  I  Q  A  K  F  R  *  N  T  Q  D  V  D  *  E  L  D  R  M  :  V  S  V  V  W  W  S  C  P  L  Q  T  S  G  R  H  R  F  R  C  G  S  I  F  P  A  R  R  N  F  P  E  L  L  H   : V  P  R  G  N  *  L  W  E  N  Q  W  W  T  V  Y  C  N  *  L  *  L  *  C  S  F  R  *  V  R :   A  Y  K  S  T  K  M  G  S  L  E  R  S  P  *  S  H  K  A  L  *  G  C  N  G  G  N  R  T  K  H  H  F  S  G  L  *  Y  R   : G  Q  C  L  *  N  *  F  T  V  C  C  I  S  R  Q  Y  C  Y  A  I  *  C  G  C  E  L  Q  W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G  S  *  C  I  W  W  I  P  I  R  L  D  F  G  E  *  A  C  R  H  L  K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I  S   : G  W  I  E  R  R  R  F  G  L  I  *  W  R  F  Y  T  L  E  V  T  N  C  I  A  Y  K  P  T  I  N  M  V  *   : G  K  F  *  C  S  C  W  *  Y  P  S  F  D  G  F  Y  W  N  G  E  G  *  G  M  G  E  W  A  K  H  R  S  I  L  A  C  L  Y  C  T  E  *  R  L  Y  *  P  L  Q  L  *  R  R  I  Q  C  *  K  M  S  Q  K  L  W  K  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  Y  F  </second_frame>
            <third_frame>   F  I  E  E  Y  Y  Y  S  V  F  I  H  F  L  I  *  Y  P  E  M  A  K  M  F  A  C  L  V  F  *  A  D  N  T  K  Y  S  V  F  I  F  I  I  *  F  I  C  I  E  K  N  S  S  S  S  S  V  *  S  R  P  V  L  Q  K  N  D  E  Q  N  D  D  D  N  V  I  R  I  I  N  F  N  F  F  I  F  T  L  L  V  V  V  S  S  P  A  Y  D  N  F  I  F  I  L  N  N  L  F  P  F  S  V  F  I  L  L  S  K  L  L  K  A  A  K  A  K  K  K  K  L  K  K  L  C  F  *  Q  S  I  T  L  Y  I  V  L  G  I  N  N  F  G  F  F  F  F  L  Y  *  L  I  G  K  L  K  I  F  G  R  K  M  E  R  R  S  G  Y  C  L  S  V  I  M  L  V  F  G  V  V  F  L  H  C  L  V  M  T  S  F  A  A  N  V  T  Y  D  H  R  A  L  V  V  D  G  R  R  R  V  L  I  S  G  S  I  H  Y  P  R  S  T  P  D  :  M  W  P  D  L  I  Q  K  S  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  V  R  N  Q  :  Y  D  F  E  G  R  K  D  L  I  N  F  V  K  L  V  E  K  A  G  L  F  V  H  I  R  I  G  P  Y  V  C  A  E  W  N  Y  G :   G  F  P  L  W  L  H  F  I  P  G  I  E  F  R  T  D  N  E  P  F  K  :  A  E  M  K  R  F  T  A  K  I  V  D  M  I  K  Q  E  N  L  Y  A  S  Q  G  G  P  V  I  L  S  Q  :  I  E  N  E  Y  G  N  G  D  I  E  S  R  Y  G  P  R  A  K  P  Y  V  N  W  A  A  S  M  A  T  S  L  N  T  G  V  P  W  V  M  C  Q  Q  P  D  A  P  P  S  V  :  I  N  T  C  N  G  F  Y  C  D  Q  F  K  Q  N  S  D  K  T  P  K  M  W  T  E  N  W  T  G  W :   F  L  S  F  G  G  P  V  P  Y  R  P  V  E  D  I  A  F  A  V  A  R  F  F  Q  R  G  G  T  F  Q  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  S  G  G  P  F  I  A  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  I  N  Q  P  K  W  G  H  L  K  D  L  H  K  A  I  K  L  C  E  A  A  M  V  A  T  E  P  N  I  T  S  L  G  S  N  I  E  :  V  S  V  Y  K  T  D  S  Q  C  A  A  F  L  A  N  T  A  T  Q  S  D  A  A  V  S  F  N  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  A  D  A  S  G  G  S  L  S  G  W  T  S  V  N  E  P  V  G  I  S  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T  Y  Q  :  V  G  L  K  G  E  D  L  G  L  S  N  G  G  S  T  L  W  K  S  Q  T  A  L  P  T  N  Q  P  L  I  W  Y  K  :  A  S  F  D  A  P  A  G  D  T  P  L  S  M  D  F  T  G  M  G  K  G  E  A  W  V  N  G  Q  S  I  G  R  F  W  P  A  Y  I  A  P  N  D  G  C  T  D  P  C  N  Y  R  G  G  Y  N  A  E  K  C  L  K  N  C  G  K  P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38494" stop="38712"/>
                    <exon start="38789" stop="38884"/>
                    <exon start="39692" stop="39804"/>
                    <exon start="39895" stop="39961"/>
                    <exon start="40043" stop="40135"/>
                    <exon start="40244" stop="40393"/>
                    <exon start="40540" stop="40628"/>
                    <exon start="40738" stop="40843"/>
                    <exon start="40940" stop="41027"/>
                    <exon start="41122" stop="41240"/>
                    <exon start="41707" stop="41868"/>
                    <exon start="41955" stop="42151"/>
                    <exon start="42311" stop="42420"/>
                    <exon start="42698" stop="42807"/>
                    <exon start="42972" stop="43085"/>
                    <exon start="43238" stop="43339"/>
                    <exon start="43949" stop="44160"/>
                    <exon start="44279" stop="44615"/>
                    <exon start="44952" stop="45059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2589</number_coding_nucleotides>
                  <number_encoded_amino_acids>863</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGKLKIFGRKMERRSGYCLSVIMLVFGVVFLHCLVMTSFAANVTYDHRALVVDGRRRVLISGSIHYPRSTPDMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYDFEGRKDLINFVKLVEKAGLFVHIRIGPYVCAEWNYGGFPLWLHFIPGIEFRTDNEPFKAEMKRFTAKIVDMIKQENLYASQGGPVILSQIENEYGNGDIESRYGPRAKPYVNWAASMATSLNTGVPWVMCQQPDAPPSVINTCNGFYCDQFKQNSDKTPKMWTENWTGWFLSFGGPVPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFIATSYDYDAPLDEYGLINQPKWGHLKDLHKAIKLCEAAMVATEPNITSLGSNIEVSVYKTDSQCAAFLANTATQSDAAVSFNGNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSEADASGGSLSGWTSVNEPVGISNENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWTYQVGLKGEDLGLSNGGSTLWKSQTALPTNQPLIWYKASFDAPAGDTPLSMDFTGMGKGEAWVNGQSIGRFWPAYIAPNDGCTDPCNYRGGYNAEKCLKNCGKPSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38194" stop="38427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPVLQKNDEQNDDDNVIRIINFNFFIFTLLVVVSSPAYDNFIFILNNLFPFSVFILLSKLLKAAKAKKKKLKKLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38018" e_stop="38712"/>
            <exon e_start="38789" e_stop="38884"/>
            <exon e_start="39692" e_stop="39804"/>
            <exon e_start="39895" e_stop="39961"/>
            <exon e_start="40043" e_stop="40135"/>
            <exon e_start="40244" e_stop="40393"/>
            <exon e_start="40540" e_stop="40628"/>
            <exon e_start="40738" e_stop="40843"/>
            <exon e_start="40940" e_stop="41027"/>
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          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCATAGAAGAATATTATTACTCTGTTTTTATACATTTTCTTATATAATACCCAGAAATGGCTAAAATGTTTGCTTGCTTAGTGTTTTGAGCCGACAATACTAAATACTCTGTATTTATTTTCATTATATAATTCATATGTATTGAAAAAAATTCATCATCATCATCAGTATAAAGCCGTCCAGTACTGCAGAAAAATGATGAACAAAACGACGATGACAACGTCATTAGGATAATTAATTTTAATTTTTTTATTTTTACATTATTAGTTGTCGTGTCGTCTCCGGCTTATGATAACTTCATCTTCATCCTTAACAATTTGTTTCCTTTTTCAGTTTTCATACTTTTAAGCAAACTTCTAAAAGCTGCAAAAGCAAAAAAAAAAAAACTCAAAAAGCTCTGTTTCTAACAGAGTATTACTCTGTACATTGTTTTGGGTATAAATAATTTTGGGTTTTTTTTTTTTTTGTATTAGTTGATCGGAAAATTGAAGATTTTTGGCCGGAAAATGGAAAGAAGAAGTGGGTATTGTTTATCAGTTATAATGTTAGTGTTTGGAGTGGTTTTCTTGCATTGTTTGGTGATGACGTCATTTGCCGCTAATGTGACGTATGATCACCGGGCATTGGTTGTTGACGGAAGGAGAAGAGTTTTGATCTCCGGTTCAATACATTATCCTCGGAGTACTCCTGAT : ATGTGGCCAGACCTTATACAGAAATCAAAAGATGGAGGATTGGATGTTATAGAGACTTATGTTTTCTGGAACCTTCATGAACCTGTTCGAAATCAG : TATGATTTTGAAGGAAGGAAAGATTTGATTAATTTTGTGAAGTTGGTGGAGAAAGCTGGCTTATTTGTTCATATAAGGATTGGGCCTTATGTTTGTGCAGAATGGAACTATGG : TGGGTTTCCTCTTTGGTTGCATTTCATTCCTGGAATTGAATTTCGAACCGACAATGAACCGTTCAAG : GCAGAAATGAAGCGATTCACAGCTAAAATTGTTGACATGATCAAGCAAGAAAATCTATATGCATCCCAGGGTGGGCCGGTTATCTTGTCTCAG : ATAGAAAATGAGTATGGCAATGGTGATATTGAGTCTCGTTATGGTCCTCGTGCCAAACCTTACGTGAACTGGGCAGCATCAATGGCTACGTCTTTAAATACGGGAGTGCCATGGGTTATGTGTCAGCAACCAGATGCCCCTCCTTCCGTT : ATTAACACTTGCAATGGATTTTATTGTGACCAATTCAAGCAAAATTCCGATAAAACACCCAAGATGTGGACTGAGAATTGGACCGGATG : GTTTCTGTCGTTTGGTGGTCCTGTCCCTTACAGACCAGTGGAAGACATCGCTTTCGCTGTGGCTCGATTTTTCCAGCGAGGCGGAACTTTCCAGAACTATTACATG : TACCACGGGGGAACTAACTTTGGGAGAACCAGTGGTGGACCGTTTATTGCAACTAGCTATGACTATGATGCTCCTTTAGATGAGTACG : GGCTTATAAATCAACCAAAATGGGGTCACTTGAAAGATCTCCATAAAGCCATAAAGCTTTGTGAGGCTGCAATGGTGGCAACAGAACCAAACATCACTTCTCTGGGCTCTAATATAGAG : GTCAGTGTTTATAAAACTGATTCACAGTGTGCTGCATTTCTCGCCAATACTGCTACGCAATCTGATGCGGCTGTGAGCTTCAATGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAAGCTGATGCATCTGGTGGATCCCTATCAGGTTGGACTTCGGTGAATGAGCCTGTAGGCATCTCAAATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG : GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG : GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : AAGAAAAAATTCAACTAAAAGAAAATTAACAATTACG : GAAAAAAAAAAACTTAAA</gDNA_template>
            <first_frame> I  S  *  K  N  I  I  T  L  F  L  Y  I  F  L  Y  N  T  Q  K  W  L  K  C  L  L  A  *  C  F  E  P  T  I  L  N  T  L  Y  L  F  S  L  Y  N  S  Y  V  L  K  K  I  H  H  H  H  Q  Y  K  A  V  Q  Y  C  R  K  M  M  N  K  T  T  M  T  T  S  L  G  *  L  I  L  I  F  L  F  L  H  Y  *  L  S  C  R  L  R  L  M  I  T  S  S  S  S  L  T  I  C  F  L  F  Q  F  S  Y  F  *  A  N  F  *  K  L  Q  K  Q  K  K  K  N  S  K  S  S  V  S  N  R  V  L  L  C  T  L  F  W  V  *  I  I  L  G  F  F  F  F  C  I  S  *  S  E  N  *  R  F  L  A  G  K  W  K  E  E  V  G  I  V  Y  Q  L  *  C  *  C  L  E  W  F  S  C  I  V  W  *  *  R  H  L  P  L  M  *  R  M  I  T  G  H  W  L  L  T  E  G  E  E  F  *  S  P  V  Q  Y  I  I  L  G  V  L  L  I :   C  G  Q  T  L  Y  R  N  Q  K  M  E  D  W  M  L  *  R  L  M  F  S  G  T  F  M  N  L  F  E  I  S :   M  I  L  K  E  G  K  I  *  L  I  L  *  S  W  W  R  K  L  A  Y  L  F  I  *  G  L  G  L  M  F  V  Q  N  G  T  M   : V  G  F  L  F  G  C  I  S  F  L  E  L  N  F  E  P  T  M  N  R  S  R :   Q  K  *  S  D  S  Q  L  K  L  L  T  *  S  S  K  K  I  Y  M  H  P  R  V  G  R  L  S  C  L  R :   *  K  M  S  M  A  M  V  I  L  S  L  V  M  V  L  V  P  N  L  T  *  T  G  Q  H  Q  W  L  R  L  *  I  R  E  C  H  G  L  C  V  S  N  Q  M  P  L  L  P  L :   L  T  L  A  M  D  F  I  V  T  N  S  S  K  I  P  I  K  H  P  R  C  G  L  R  I  G  P  D   : G  F  C  R  L  V  V  L  S  L  T  D  Q  W  K  T  S  L  S  L  W  L  D  F  S  S  E  A  E  L  S  R  T  I  T  C :   T  T  G  E  L  T  L  G  E  P  V  V  D  R  L  L  Q  L  A  M  T  M  M  L  L  *  M  S  T  :  G  L  *  I  N  Q  N  G  V  T  *  K  I  S  I  K  P  *  S  F  V  R  L  Q  W  W  Q  Q  N  Q  T  S  L  L  W  A  L  I  *  R :   S  V  F  I  K  L  I  H  S  V  L  H  F  S  P  I  L  L  R  N  L  M  R  L  *  A  S  M  E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K  L  M  H  L  V  D  P  Y  Q  V  G  L  R  *  M  S  L  *  A  S  Q  M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  I  R :   L  D  *  K  E  K  I  W  A  Y  L  M  E  V  L  H  F  G  S  H  K  L  H  C  L  Q  T  N  H  *  Y  G  I  R :   Q  V  L  M  L  L  L  V  I  P  L  F  R  W  I  L  L  E  W  G  R  V  R  H  G  *  M  G  K  A  S  V  D  F  G  L  P  I  L  H  R  M  T  V  V  L  T  P  A  I  I  E  E  D  T  M  L  K  N  V  S  K  I  V  E  N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  K  K  K  F  N  *  K  K  I  N  N  Y   : G  K  K  K  T  *  </first_frame>
            <second_frame>  F  H  R  R  I  L  L  L  C  F  Y  T  F  S  Y  I  I  P  R  N  G  *  N  V  C  L  L  S  V  L  S  R  Q  Y  *  I  L  C  I  Y  F  H  Y  I  I  H  M  Y  *  K  K  F  I  I  I  I  S  I  K  P  S  S  T  A  E  K  *  *  T  K  R  R  *  Q  R  H  *  D  N  *  F  *  F  F  Y  F  Y  I  I  S  C  R  V  V  S  G  L  *  *  L  H  L  H  P  *  Q  F  V  S  F  F  S  F  H  T  F  K  Q  T  S  K  S  C  K  S  K  K  K  K  T  Q  K  A  L  F  L  T  E  Y  Y  S  V  H  C  F  G  Y  K  *  F  W  V  F  F  F  F  V  L  V  D  R  K  I  E  D  F  W  P  E  N  G  K  K  K  W  V  L  F  I  S  Y  N  V  S  V  W  S  G  F  L  A  L  F  G  D  D  V  I  C  R  *  C  D  V  *  S  P  G  I  G  C  *  R  K  E  K  S  F  D  L  R  F  N  T  L  S  S  E  Y  S  *   : Y  V  A  R  P  Y  T  E  I  K  R  W  R  I  G  C  Y  R  D  L  C  F  L  E  P  S  *  T  C  S  K  S   : V  *  F  *  R  K  E  R  F  D  *  F  C  E  V  G  G  E  S  W  L  I  C  S  Y  K  D  W  A  L  C  L  C  R  M  E  L  W  :  W  V  S  S  L  V  A  F  H  S  W  N  *  I  S  N  R  Q  *  T  V  Q   : G  R  N  E  A  I  H  S  *  N  C  *  H  D  Q  A  R  K  S  I  C  I  P  G  W  A  G  Y  L  V  S   : D  R  K  *  V  W  Q  W  *  Y  *  V  S  L  W  S  S  C  Q  T  L  R  E  L  G  S  I  N  G  Y  V  F  K  Y  G  S  A  M  G  Y  V  S  A  T  R  C  P  S  F  R   : Y  *  H  L  Q  W  I  L  L  *  P  I  Q  A  K  F  R  *  N  T  Q  D  V  D  *  E  L  D  R  M  :  V  S  V  V  W  W  S  C  P  L  Q  T  S  G  R  H  R  F  R  C  G  S  I  F  P  A  R  R  N  F  P  E  L  L  H   : V  P  R  G  N  *  L  W  E  N  Q  W  W  T  V  Y  C  N  *  L  *  L  *  C  S  F  R  *  V  R :   A  Y  K  S  T  K  M  G  S  L  E  R  S  P  *  S  H  K  A  L  *  G  C  N  G  G  N  R  T  K  H  H  F  S  G  L  *  Y  R   : G  Q  C  L  *  N  *  F  T  V  C  C  I  S  R  Q  Y  C  Y  A  I  *  C  G  C  E  L  Q  W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G  S  *  C  I  W  W  I  P  I  R  L  D  F  G  E  *  A  C  R  H  L  K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I  S   : G  W  I  E  R  R  R  F  G  L  I  *  W  R  F  Y  T  L  E  V  T  N  C  I  A  Y  K  P  T  I  N  M  V  *   : G  K  F  *  C  S  C  W  *  Y  P  S  F  D  G  F  Y  W  N  G  E  G  *  G  M  G  E  W  A  K  H  R  S  I  L  A  C  L  Y  C  T  E  *  R  L  Y  *  P  L  Q  L  *  R  R  I  Q  C  *  K  M  S  Q  K  L  W  K  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   R  K  N  S  T  K  R  K  L  T  I  T  :  E  K  K  K  L  K </second_frame>
            <third_frame>   F  I  E  E  Y  Y  Y  S  V  F  I  H  F  L  I  *  Y  P  E  M  A  K  M  F  A  C  L  V  F  *  A  D  N  T  K  Y  S  V  F  I  F  I  I  *  F  I  C  I  E  K  N  S  S  S  S  S  V  *  S  R  P  V  L  Q  K  N  D  E  Q  N  D  D  D  N  V  I  R  I  I  N  F  N  F  F  I  F  T  L  L  V  V  V  S  S  P  A  Y  D  N  F  I  F  I  L  N  N  L  F  P  F  S  V  F  I  L  L  S  K  L  L  K  A  A  K  A  K  K  K  K  L  K  K  L  C  F  *  Q  S  I  T  L  Y  I  V  L  G  I  N  N  F  G  F  F  F  F  L  Y  *  L  I  G  K  L  K  I  F  G  R  K  M  E  R  R  S  G  Y  C  L  S  V  I  M  L  V  F  G  V  V  F  L  H  C  L  V  M  T  S  F  A  A  N  V  T  Y  D  H  R  A  L  V  V  D  G  R  R  R  V  L  I  S  G  S  I  H  Y  P  R  S  T  P  D  :  M  W  P  D  L  I  Q  K  S  K  D  G  G  L  D  V  I  E  T  Y  V  F  W  N  L  H  E  P  V  R  N  Q  :  Y  D  F  E  G  R  K  D  L  I  N  F  V  K  L  V  E  K  A  G  L  F  V  H  I  R  I  G  P  Y  V  C  A  E  W  N  Y  G :   G  F  P  L  W  L  H  F  I  P  G  I  E  F  R  T  D  N  E  P  F  K  :  A  E  M  K  R  F  T  A  K  I  V  D  M  I  K  Q  E  N  L  Y  A  S  Q  G  G  P  V  I  L  S  Q  :  I  E  N  E  Y  G  N  G  D  I  E  S  R  Y  G  P  R  A  K  P  Y  V  N  W  A  A  S  M  A  T  S  L  N  T  G  V  P  W  V  M  C  Q  Q  P  D  A  P  P  S  V  :  I  N  T  C  N  G  F  Y  C  D  Q  F  K  Q  N  S  D  K  T  P  K  M  W  T  E  N  W  T  G  W :   F  L  S  F  G  G  P  V  P  Y  R  P  V  E  D  I  A  F  A  V  A  R  F  F  Q  R  G  G  T  F  Q  N  Y  Y  M  :  Y  H  G  G  T  N  F  G  R  T  S  G  G  P  F  I  A  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  I  N  Q  P  K  W  G  H  L  K  D  L  H  K  A  I  K  L  C  E  A  A  M  V  A  T  E  P  N  I  T  S  L  G  S  N  I  E  :  V  S  V  Y  K  T  D  S  Q  C  A  A  F  L  A  N  T  A  T  Q  S  D  A  A  V  S  F  N  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  A  D  A  S  G  G  S  L  S  G  W  T  S  V  N  E  P  V  G  I  S  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T  Y  Q  :  V  G  L  K  G  E  D  L  G  L  S  N  G  G  S  T  L  W  K  S  Q  T  A  L  P  T  N  Q  P  L  I  W  Y  K  :  A  S  F  D  A  P  A  G  D  T  P  L  S  M  D  F  T  G  M  G  K  G  E  A  W  V  N  G  Q  S  I  G  R  F  W  P  A  Y  I  A  P  N  D  G  C  T  D  P  C  N  Y  R  G  G  Y  N  A  E  K  C  L  K  N  C  G  K  P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : K  E  K  I  Q  L  K  E  N  *  Q  L  R :   K  K  K  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38494" stop="38712"/>
                    <exon start="38789" stop="38884"/>
                    <exon start="39692" stop="39804"/>
                    <exon start="39895" stop="39961"/>
                    <exon start="40043" stop="40135"/>
                    <exon start="40244" stop="40393"/>
                    <exon start="40540" stop="40628"/>
                    <exon start="40738" stop="40843"/>
                    <exon start="40940" stop="41027"/>
                    <exon start="41122" stop="41240"/>
                    <exon start="41707" stop="41868"/>
                    <exon start="41955" stop="42151"/>
                    <exon start="42311" stop="42420"/>
                    <exon start="42698" stop="42807"/>
                    <exon start="42972" stop="43085"/>
                    <exon start="43238" stop="43339"/>
                    <exon start="43949" stop="44160"/>
                    <exon start="44279" stop="44615"/>
                    <exon start="44952" stop="45059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2589</number_coding_nucleotides>
                  <number_encoded_amino_acids>863</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGKLKIFGRKMERRSGYCLSVIMLVFGVVFLHCLVMTSFAANVTYDHRALVVDGRRRVLISGSIHYPRSTPDMWPDLIQKSKDGGLDVIETYVFWNLHEPVRNQYDFEGRKDLINFVKLVEKAGLFVHIRIGPYVCAEWNYGGFPLWLHFIPGIEFRTDNEPFKAEMKRFTAKIVDMIKQENLYASQGGPVILSQIENEYGNGDIESRYGPRAKPYVNWAASMATSLNTGVPWVMCQQPDAPPSVINTCNGFYCDQFKQNSDKTPKMWTENWTGWFLSFGGPVPYRPVEDIAFAVARFFQRGGTFQNYYMYHGGTNFGRTSGGPFIATSYDYDAPLDEYGLINQPKWGHLKDLHKAIKLCEAAMVATEPNITSLGSNIEVSVYKTDSQCAAFLANTATQSDAAVSFNGNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSEADASGGSLSGWTSVNEPVGISNENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWTYQVGLKGEDLGLSNGGSTLWKSQTALPTNQPLIWYKASFDAPAGDTPLSMDFTGMGKGEAWVNGQSIGRFWPAYIAPNDGCTDPCNYRGGYNAEKCLKNCGKPSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38194" stop="38427"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPVLQKNDEQNDDDNVIRIINFNFFIFTLLVVVSSPAYDNFIFILNNLFPFSVFILLSKLLKAAKAKKKKLKKLCF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="41790" e_stop="41868"/>
            <exon e_start="41955" e_stop="42002"/>
            <exon e_start="42066" e_stop="42151"/>
            <exon e_start="42311" e_stop="42420"/>
            <exon e_start="42698" e_stop="42807"/>
            <exon e_start="42972" e_stop="43085"/>
            <exon e_start="43238" e_stop="43339"/>
            <exon e_start="43949" e_stop="44160"/>
            <exon e_start="44279" e_stop="44615"/>
            <exon e_start="44952" e_stop="45252"/>
            <exon e_start="47045" e_stop="47060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.958"/>
          <exon-intron don_prob="0.983" acc_prob="0.975" e_score="0.971"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.815" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.909" e_score="0.987"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41790" e_stop="41868" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.978">
            <gDNA_intron_boundary i_start="41869" i_stop="41954" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="41955" e_stop="42002" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42003" i_stop="42065" i_length="63"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="42066" e_stop="42151" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42152" i_stop="42310" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42311" e_stop="42420" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42421" i_stop="42697" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42698" e_stop="42807" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.953">
            <gDNA_intron_boundary i_start="42808" i_stop="42971" i_length="164"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42972" e_stop="43085" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.815" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43086" i_stop="43237" i_length="152"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43238" e_stop="43339" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.956" acc_prob="0.974">
            <gDNA_intron_boundary i_start="43340" i_stop="43948" i_length="609"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43949" e_stop="44160" e_length="212"/>
          </exon>
          <intron i_serial="8" don_prob="0.880" acc_prob="0.961">
            <gDNA_intron_boundary i_start="44161" i_stop="44278" i_length="118"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44279" e_stop="44615" e_length="337"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.991">
            <gDNA_intron_boundary i_start="44616" i_stop="44951" i_length="336"/>
          </intron>
          <exon e_serial="10" e_score="0.987">
            <gDNA_exon_boundary e_start="44952" e_stop="45252" e_length="301"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="45253" i_stop="47044" i_length="1792"/>
          </intron>
          <exon e_serial="11" e_score="0.625">
            <gDNA_exon_boundary e_start="47045" e_stop="47060" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41790" stop="41868"/>
              <exon start="41955" stop="42002"/>
              <exon start="42066" stop="42151"/>
              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42082" stop="42151"/>
              <exon start="42311" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42361" stop="42420"/>
              <exon start="42698" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42790" stop="42807"/>
              <exon start="42972" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43008" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43054" stop="43085"/>
              <exon start="43238" stop="43339"/>
              <exon start="43949" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43962" stop="44160"/>
              <exon start="44279" stop="44615"/>
              <exon start="44952" stop="45054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44503" stop="44615"/>
              <exon start="44952" stop="45249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44505" stop="44615"/>
              <exon start="44952" stop="45252"/>
              <exon start="47045" stop="47060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44563" stop="44615"/>
              <exon start="44952" stop="45252"/>
              <exon start="47045" stop="47060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAACTCATATCATTTACCTCCATGGTCCGTCAGCATTTTACCTGACTGCAAGAATGTTGCTTTTAGTACTGCAAAG : ATTAATTCTGCATCAACCATCTCAACATTTGTTACTCGGTCTTCGGAA : AATGAAAATGCATTCACGAGAATGGGGTTGTTGGAACAGATAAATACTACAGCTGATAAAAGCGATTATCTCTGGTACTCCCTGAG : TGTCAATATAAAAAATGATGAGCCTTTCCTTCAAGATGGATCTGCAACGGTACTTCATGTGAAAACACTTGGCCATGTTCTTCATGCTTATATTAATGGAAAGCTATCAG : GAAGTGGAAAAGGCAACAGTAGACATTCTAACTTTACAATTGAAGTTCCAGTCACACTTGTGCCTGGAGAAAACAAAATTGACCTGTTGAGTGCGACTGTGGGACTTCAG : AACTATGGAGCATTCTTTGATCTCAAGGGAGCAGGGATTACGGGTCCAGTGCAATTGAAAGGTTTCAAAAATGGCTCTACTACTGATCTTTCATCAAAGCAGTGGACATATCAG : GTTGGATTGAAAGGAGAAGATTTGGGCTTATCTAATGGAGGTTCTACACTTTGGAAGTCACAAACTGCATTGCCTACAAACCAACCATTAATATGGTATAAG : GCAAGTTTTGATGCTCCTGCTGGTGATACCCCTCTTTCGATGGATTTTACTGGAATGGGGAAGGGTGAGGCATGGGTGAATGGGCAAAGCATCGGTCGATTTTGGCCTGCCTATATTGCACCGAATGACGGTTGTACTGACCCCTGCAATTATAGAGGAGGATACAATGCTGAAAAATGTCTCAAAAATTGTGGAAAACCATCCCAGCTGCT : ATACCACGTTCCTCGTTCATGGCTGAAATCCAGTGGAAATGTCTTGGTGTTGTTTGAGGAAATGGGCGGGGATCCTACGAAGCTGTCTTTTGCAACAAGAGAGATACAAAGTGTATGCTCAAGAATATCTGATGCTCATCCACTTCCTATTGATATGTGGGCTTCGGAAGACGATGCACGAAAAAAGTCAGGGCCAACTCTATCTCTTGAGTGCCCTCATCCTAATCAAGTCATCTCATCAATCAAATTTGCAAGCTTTGGCACTCCTCAAGGAACATGCGGGAGCTTTATCCATGGTCGATGCAGTAGCAGCAATGCTCTTTCAATTGTAAAGAAG : GCTTGCATTGGATCAAAAAGCTGTAGTCTTGGAGTTTCAATAAATGCATTTGGTGATCCATGTAAAGGAGTCGCAAAAAGTTTAGCTGTAGAAGCTTCTTGTACATGATGCCTCACGAAACTAATGAACCGAGAAGGCACGTTCCTTAAGTGTTAAAGTAGTATAAGGTCAGATAAACCATTACTAAGTTACAGCTTCAGAAAGATAGTGCTTAGCTACATATACATCATGGAGAGGAAGACCACTTTGGCTTCCCTCACCGATTTGATGAAATTATAATAAAAGAAAACTAGCTTCAATA : ACAGAAAATAAACACT</gDNA_template>
            <first_frame> W  K  L  I  S  F  T  S  M  V  R  Q  H  F  T  *  L  Q  E  C  C  F  *  Y  C  K   : D  *  F  C  I  N  H  L  N  I  C  Y  S  V  F  G   : K  *  K  C  I  H  E  N  G  V  V  G  T  D  K  Y  Y  S  *  *  K  R  L  S  L  V  L  P  E  :  C  Q  Y  K  K  *  *  A  F  P  S  R  W  I  C  N  G  T  S  C  E  N  T  W  P  C  S  S  C  L  Y  *  W  K  A  I  R :   K  W  K  R  Q  Q  *  T  F  *  L  Y  N  *  S  S  S  H  T  C  A  W  R  K  Q  N  *  P  V  E  C  D  C  G  T  S   : E  L  W  S  I  L  *  S  Q  G  S  R  D  Y  G  S  S  A  I  E  R  F  Q  K  W  L  Y  Y  *  S  F  I  K  A  V  D  I  S   : G  W  I  E  R  R  R  F  G  L  I  *  W  R  F  Y  T  L  E  V  T  N  C  I  A  Y  K  P  T  I  N  M  V  *   : G  K  F  *  C  S  C  W  *  Y  P  S  F  D  G  F  Y  W  N  G  E  G  *  G  M  G  E  W  A  K  H  R  S  I  L  A  C  L  Y  C  T  E  *  R  L  Y  *  P  L  Q  L  *  R  R  I  Q  C  *  K  M  S  Q  K  L  W  K  T  I  P  A  A  :  I  P  R  S  S  F  M  A  E  I  Q  W  K  C  L  G  V  V  *  G  N  G  R  G  S  Y  E  A  V  F  C  N  K  R  D  T  K  C  M  L  K  N  I  *  C  S  S  T  S  Y  *  Y  V  G  F  G  R  R  C  T  K  K  V  R  A  N  S  I  S  *  V  P  S  S  *  S  S  H  L  I  N  Q  I  C  K  L  W  H  S  S  R  N  M  R  E  L  Y  P  W  S  M  Q  *  Q  Q  C  S  F  N  C  K  E   : G  L  H  W  I  K  K  L  *  S  W  S  F  N  K  C  I  W  *  S  M  *  R  S  R  K  K  F  S  C  R  S  F  L  Y  M  M  P  H  E  T  N  E  P  R  R  H  V  P  *  V  L  K  *  Y  K  V  R  *  T  I  T  K  L  Q  L  Q  K  D  S  A  *  L  H  I  H  H  G  E  E  D  H  F  G  F  P  H  R  F  D  E  I  I  I  K  E  N  *  L  Q  * :   Q  K  I  N  T </first_frame>
            <second_frame>  G  N  S  Y  H  L  P  P  W  S  V  S  I  L  P  D  C  K  N  V  A  F  S  T  A  K  :  I  N  S  A  S  T  I  S  T  F  V  T  R  S  S  E  :  N  E  N  A  F  T  R  M  G  L  L  E  Q  I  N  T  T  A  D  K  S  D  Y  L  W  Y  S  L  S :   V  N  I  K  N  D  E  P  F  L  Q  D  G  S  A  T  V  L  H  V  K  T  L  G  H  V  L  H  A  Y  I  N  G  K  L  S   : G  S  G  K  G  N  S  R  H  S  N  F  T  I  E  V  P  V  T  L  V  P  G  E  N  K  I  D  L  L  S  A  T  V  G  L  Q  :  N  Y  G  A  F  F  D  L  K  G  A  G  I  T  G  P  V  Q  L  K  G  F  K  N  G  S  T  T  D  L  S  S  K  Q  W  T  Y  Q  :  V  G  L  K  G  E  D  L  G  L  S  N  G  G  S  T  L  W  K  S  Q  T  A  L  P  T  N  Q  P  L  I  W  Y  K  :  A  S  F  D  A  P  A  G  D  T  P  L  S  M  D  F  T  G  M  G  K  G  E  A  W  V  N  G  Q  S  I  G  R  F  W  P  A  Y  I  A  P  N  D  G  C  T  D  P  C  N  Y  R  G  G  Y  N  A  E  K  C  L  K  N  C  G  K  P  S  Q  L  L :   Y  H  V  P  R  S  W  L  K  S  S  G  N  V  L  V  L  F  E  E  M  G  G  D  P  T  K  L  S  F  A  T  R  E  I  Q  S  V  C  S  R  I  S  D  A  H  P  L  P  I  D  M  W  A  S  E  D  D  A  R  K  K  S  G  P  T  L  S  L  E  C  P  H  P  N  Q  V  I  S  S  I  K  F  A  S  F  G  T  P  Q  G  T  C  G  S  F  I  H  G  R  C  S  S  S  N  A  L  S  I  V  K  K  :  A  C  I  G  S  K  S  C  S  L  G  V  S  I  N  A  F  G  D  P  C  K  G  V  A  K  S  L  A  V  E  A  S  C  T  *  C  L  T  K  L  M  N  R  E  G  T  F  L  K  C  *  S  S  I  R  S  D  K  P  L  L  S  Y  S  F  R  K  I  V  L  S  Y  I  Y  I  M  E  R  K  T  T  L  A  S  L  T  D  L  M  K  L  *  *  K  K  T  S  F  N   : N  R  K  *  T   </second_frame>
            <third_frame>   E  T  H  I  I  Y  L  H  G  P  S  A  F  Y  L  T  A  R  M  L  L  L  V  L  Q  R :   L  I  L  H  Q  P  S  Q  H  L  L  L  G  L  R  K :   M  K  M  H  S  R  E  W  G  C  W  N  R  *  I  L  Q  L  I  K  A  I  I  S  G  T  P  *   : V  S  I  *  K  M  M  S  L  S  F  K  M  D  L  Q  R  Y  F  M  *  K  H  L  A  M  F  F  M  L  I  L  M  E  S  Y  Q  :  E  V  E  K  A  T  V  D  I  L  T  L  Q  L  K  F  Q  S  H  L  C  L  E  K  T  K  L  T  C  *  V  R  L  W  D  F  R :   T  M  E  H  S  L  I  S  R  E  Q  G  L  R  V  Q  C  N  *  K  V  S  K  M  A  L  L  L  I  F  H  Q  S  S  G  H  I  R :   L  D  *  K  E  K  I  W  A  Y  L  M  E  V  L  H  F  G  S  H  K  L  H  C  L  Q  T  N  H  *  Y  G  I  R :   Q  V  L  M  L  L  L  V  I  P  L  F  R  W  I  L  L  E  W  G  R  V  R  H  G  *  M  G  K  A  S  V  D  F  G  L  P  I  L  H  R  M  T  V  V  L  T  P  A  I  I  E  E  D  T  M  L  K  N  V  S  K  I  V  E  N  H  P  S  C   : Y  T  T  F  L  V  H  G  *  N  P  V  E  M  S  W  C  C  L  R  K  W  A  G  I  L  R  S  C  L  L  Q  Q  E  R  Y  K  V  Y  A  Q  E  Y  L  M  L  I  H  F  L  L  I  C  G  L  R  K  T  M  H  E  K  S  Q  G  Q  L  Y  L  L  S  A  L  I  L  I  K  S  S  H  Q  S  N  L  Q  A  L  A  L  L  K  E  H  A  G  A  L  S  M  V  D  A  V  A  A  M  L  F  Q  L  *  R  R :   L  A  L  D  Q  K  A  V  V  L  E  F  Q  *  M  H  L  V  I  H  V  K  E  S  Q  K  V  *  L  *  K  L  L  V  H  D  A  S  R  N  *  *  T  E  K  A  R  S  L  S  V  K  V  V  *  G  Q  I  N  H  Y  *  V  T  A  S  E  R  *  C  L  A  T  Y  T  S  W  R  G  R  P  L  W  L  P  S  P  I  *  *  N  Y  N  K  R  K  L  A  S  I  :  T  E  N  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41791" stop="41868"/>
                    <exon start="41955" stop="42002"/>
                    <exon start="42066" stop="42151"/>
                    <exon start="42311" stop="42420"/>
                    <exon start="42698" stop="42807"/>
                    <exon start="42972" stop="43085"/>
                    <exon start="43238" stop="43339"/>
                    <exon start="43949" stop="44160"/>
                    <exon start="44279" stop="44615"/>
                    <exon start="44952" stop="45059"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1302</number_coding_nucleotides>
                  <number_encoded_amino_acids>434</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNSYHLPPWSVSILPDCKNVAFSTAKINSASTISTFVTRSSENENAFTRMGLLEQINTTADKSDYLWYSLSVNIKNDEPFLQDGSATVLHVKTLGHVLHAYINGKLSGSGKGNSRHSNFTIEVPVTLVPGENKIDLLSATVGLQNYGAFFDLKGAGITGPVQLKGFKNGSTTDLSSKQWTYQVGLKGEDLGLSNGGSTLWKSQTALPTNQPLIWYKASFDAPAGDTPLSMDFTGMGKGEAWVNGQSIGRFWPAYIAPNDGCTDPCNYRGGYNAEKCLKNCGKPSQLLYHVPRSWLKSSGNVLVLFEEMGGDPTKLSFATREIQSVCSRISDAHPLPIDMWASEDDARKKSGPTLSLECPHPNQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCKGVAKSLAVEASCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="47030" PGL_stop="45900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47030" e_stop="46674"/>
            <exon e_start="46217" e_stop="45900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.947"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="47030" e_stop="46674" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46673" i_stop="46218" i_length="456"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="46217" e_stop="45900" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47030" stop="46674"/>
              <exon start="46217" stop="45900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAACAAAAAACAGAAAAAATATATCAACAACAGTCATAGTAGAGATGGATAAGAGAAACTTGTGCTTAATAGCAGCTCTGCTCCTCTTATCCATCTTTTCACAAGTAACCATTGCTGATCAACCAGAAGGCAAAGGTAAGGAGGTGAATGCAGTTGCTACGGATCCCGGTTATAATGTGTTGGATCCATTACCAGGTACGGGGCAAGAACGTGCGTTCTGCACCGTTCAGGGAGTTTGTTACTACAGAACTCTTACCTGTCCAACAGAGTGTCCTCAAAGGAAGCCTAAACAGAACAAGAAGCAGAAGGGATGCTATATTGATTGCAGCAGCAAGTGTGAAGCAACTTGCAAGT : GGAGACTACCTAGGTGTGATGGTTATGGTGCTCTATGCTACGATCCAAGATTTGTGGGTGGTGACGGGGTGATGTTCTACTTCCACGGAGCAAAGGAAACCGACTTTGCCATTGTTTCAGATGACAACCTCCACATTAATGCACATCTAATAGGGACACGACCACAGGGAAGGAAGCGCGACTATACATGGGTGCAAACATTGTCAGTCATGTTTGACACCCATACATTAGTCGTAGGAGCAACGGAAGTGTCACATTGGGATGATAAGGTTGATGCTCTTATTGTACAGTGGAATGGTGAGACAGTTAATGTCCCAA</gDNA_template>
            <first_frame> N  K  Q  K  T  E  K  I  Y  Q  Q  Q  S  *  *  R  W  I  R  E  T  C  A  *  *  Q  L  C  S  S  Y  P  S  F  H  K  *  P  L  L  I  N  Q  K  A  K  V  R  R  *  M  Q  L  L  R  I  P  V  I  M  C  W  I  H  Y  Q  V  R  G  K  N  V  R  S  A  P  F  R  E  F  V  T  T  E  L  L  P  V  Q  Q  S  V  L  K  G  S  L  N  R  T  R  S  R  R  D  A  I  L  I  A  A  A  S  V  K  Q  L  A  S  :  G  D  Y  L  G  V  M  V  M  V  L  Y  A  T  I  Q  D  L  W  V  V  T  G  *  C  S  T  S  T  E  Q  R  K  P  T  L  P  L  F  Q  M  T  T  S  T  L  M  H  I  *  *  G  H  D  H  R  E  G  S  A  T  I  H  G  C  K  H  C  Q  S  C  L  T  P  I  H  *  S  *  E  Q  R  K  C  H  I  G  M  I  R  L  M  L  L  L  Y  S  G  M  V  R  Q  L  M  S  Q </first_frame>
            <second_frame>  T  N  K  K  Q  K  K  Y  I  N  N  S  H  S  R  D  G  *  E  K  L  V  L  N  S  S  S  A  P  L  I  H  L  F  T  S  N  H  C  *  S  T  R  R  Q  R  *  G  G  E  C  S  C  Y  G  S  R  L  *  C  V  G  S  I  T  R  Y  G  A  R  T  C  V  L  H  R  S  G  S  L  L  L  Q  N  S  Y  L  S  N  R  V  S  S  K  E  A  *  T  E  Q  E  A  E  G  M  L  Y  *  L  Q  Q  Q  V  *  S  N  L  Q  V :   E  T  T  *  V  *  W  L  W  C  S  M  L  R  S  K  I  C  G  W  *  R  G  D  V  L  L  P  R  S  K  G  N  R  L  C  H  C  F  R  *  Q  P  P  H  *  C  T  S  N  R  D  T  T  T  G  K  E  A  R  L  Y  M  G  A  N  I  V  S  H  V  *  H  P  Y  I  S  R  R  S  N  G  S  V  T  L  G  *  *  G  *  C  S  Y  C  T  V  E  W  *  D  S  *  C  P   </second_frame>
            <third_frame>   Q  T  K  N  R  K  N  I  S  T  T  V  I  V  E  M  D  K  R  N  L  C  L  I  A  A  L  L  L  L  S  I  F  S  Q  V  T  I  A  D  Q  P  E  G  K  G  K  E  V  N  A  V  A  T  D  P  G  Y  N  V  L  D  P  L  P  G  T  G  Q  E  R  A  F  C  T  V  Q  G  V  C  Y  Y  R  T  L  T  C  P  T  E  C  P  Q  R  K  P  K  Q  N  K  K  Q  K  G  C  Y  I  D  C  S  S  K  C  E  A  T  C  K   : W  R  L  P  R  C  D  G  Y  G  A  L  C  Y  D  P  R  F  V  G  G  D  G  V  M  F  Y  F  H  G  A  K  E  T  D  F  A  I  V  S  D  D  N  L  H  I  N  A  H  L  I  G  T  R  P  Q  G  R  K  R  D  Y  T  W  V  Q  T  L  S  V  M  F  D  T  H  T  L  V  V  G  A  T  E  V  S  H  W  D  D  K  V  D  A  L  I  V  Q  W  N  G  E  T  V  N  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47028" stop="46674"/>
                    <exon start="46217" stop="45901"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTKNRKNISTTVIVEMDKRNLCLIAALLLLSIFSQVTIADQPEGKGKEVNAVATDPGYNVLDPLPGTGQERAFCTVQGVCYYRTLTCPTECPQRKPKQNKKQKGCYIDCSSKCEATCKWRLPRCDGYGALCYDPRFVGGDGVMFYFHGAKETDFAIVSDDNLHINAHLIGTRPQGRKRDYTWVQTLSVMFDTHTLVVGATEVSHWDDKVDALIVQWNGETVNVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56366" PGL_stop="50372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56366" e_stop="56098"/>
            <exon e_start="56015" e_stop="55888"/>
            <exon e_start="54647" e_stop="54560"/>
            <exon e_start="52503" e_stop="52430"/>
            <exon e_start="51966" e_stop="51775"/>
            <exon e_start="51102" e_stop="51005"/>
            <exon e_start="50729" e_stop="50372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.948" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="56366" e_stop="56098" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56097" i_stop="56016" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56015" e_stop="55888" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55887" i_stop="54648" i_length="1240"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54647" e_stop="54560" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.954">
            <gDNA_intron_boundary i_start="54559" i_stop="52504" i_length="2056"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52503" e_stop="52430" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51966" e_stop="51775" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51102" e_stop="51005" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275"/>
          </intron>
          <exon e_serial="7" e_score="0.944">
            <gDNA_exon_boundary e_start="50729" e_stop="50372" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56366" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56333" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54560"/>
              <exon start="52503" stop="52430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56268" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56231" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56229" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54560"/>
              <exon start="52503" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56184" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54560"/>
              <exon start="52503" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56184" stop="56098"/>
              <exon start="56015" stop="55888"/>
              <exon start="54647" stop="54560"/>
              <exon start="52503" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54621" stop="54560"/>
              <exon start="52503" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317014" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51937" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51907" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51904" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51844" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51085" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213578" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCCTTTTTTTTTCGATTTTCAAGGAAGTGTGACGCAGGTGGCCGCCTCTTAGCCGCCAACAGATATTATCAGTGAAGCAAAAGCAAAACACTCACCAAATTCACCCTTTTTTCTATACCCTTAAACTCCTTAGCCGCAATTGCTGTTTCAAGATTGTGTTTTTTTTAGTACCCTTTTGTTAATTTTCATTGTTTCTTGATTTTGCAACTTGAAAAATGGTTGTGGGTGTTCTTGCTTTACAGGGATCTTTCAATGAACACATTGCAG : TTTTGAAAAGATTGGGAGTGAAAGGTGTGGAGGTGAGAAAGCCAGAGCAGTTGCTGAATGTTAGCTCCCTAATCATCCCTGGTGGGGAGAGCACCACCATGGCCAAGTTGGCTGAGCTCCACAATTTG : TTCCCTGCTTTGCGTGAGTTTGTTCAAATGGGGAAGCCAGTATGGGGGACATGTGCAGGTCTCATTTTCTTGGCAAATAAGGCCACTG : GGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</gDNA_template>
            <first_frame> D  P  F  F  F  D  F  Q  G  S  V  T  Q  V  A  A  S  *  P  P  T  D  I  I  S  E  A  K  A  K  H  S  P  N  S  P  F  F  L  Y  P  *  T  P  *  P  Q  L  L  F  Q  D  C  V  F  F  S  T  L  L  L  I  F  I  V  S  *  F  C  N  L  K  N  G  C  G  C  S  C  F  T  G  I  F  Q  *  T  H  C  S :   F  E  K  I  G  S  E  R  C  G  G  E  K  A  R  A  V  A  E  C  *  L  P  N  H  P  W  W  G  E  H  H  H  G  Q  V  G  *  A  P  Q  F   : V  P  C  F  A  *  V  C  S  N  G  E  A  S  M  G  D  M  C  R  S  H  F  L  G  K  *  G  H  W :   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S  H  S  S  S  T  N  T  I  I  I  T  S  H  S  </first_frame>
            <second_frame>  I  L  F  F  S  I  F  K  E  V  *  R  R  W  P  P  L  S  R  Q  Q  I  L  S  V  K  Q  K  Q  N  T  H  Q  I  H  P  F  F  Y  T  L  K  L  L  S  R  N  C  C  F  K  I  V  F  F  L  V  P  F  C  *  F  S  L  F  L  D  F  A  T  *  K  M  V  V  G  V  L  A  L  Q  G  S  F  N  E  H  I  A   : V  L  K  R  L  G  V  K  G  V  E  V  R  K  P  E  Q  L  L  N  V  S  S  L  I  I  P  G  G  E  S  T  T  M  A  K  L  A  E  L  H  N  L  :  F  P  A  L  R  E  F  V  Q  M  G  K  P  V  W  G  T  C  A  G  L  I  F  L  A  N  K  A  T   : G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S  H  T  P  H  P  Q  I  Q  *  *  L  R  L  I  P </second_frame>
            <third_frame>   S  F  F  F  R  F  S  R  K  C  D  A  G  G  R  L  L  A  A  N  R  Y  Y  Q  *  S  K  S  K  T  L  T  K  F  T  L  F  S  I  P  L  N  S  L  A  A  I  A  V  S  R  L  C  F  F  *  Y  P  F  V  N  F  H  C  F  L  I  L  Q  L  E  K  W  L  W  V  F  L  L  Y  R  D  L  S  M  N  T  L  Q  :  F  *  K  D  W  E  *  K  V  W  R  *  E  S  Q  S  S  C  *  M  L  A  P  *  S  S  L  V  G  R  A  P  P  W  P  S  W  L  S  S  T  I  C :   S  L  L  C  V  S  L  F  K  W  G  S  Q  Y  G  G  H  V  Q  V  S  F  S  W  Q  I  R  P  L  :  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  T  L  L  I  H  K  Y  N  N  N  Y  V  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56152" stop="56098"/>
                    <exon start="56015" stop="55888"/>
                    <exon start="54647" stop="54560"/>
                    <exon start="52503" stop="52430"/>
                    <exon start="51966" stop="51775"/>
                    <exon start="51102" stop="51005"/>
                    <exon start="50729" stop="50606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVVGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQLLNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52504" e_stop="52430"/>
            <exon e_start="51966" e_stop="51775"/>
            <exon e_start="51102" e_stop="51005"/>
            <exon e_start="50729" e_stop="50372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52504" e_stop="52430" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.995">
            <gDNA_intron_boundary i_start="52429" i_stop="51967" i_length="463"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51966" e_stop="51775" e_length="192"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="51774" i_stop="51103" i_length="672"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51102" e_stop="51005" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.982">
            <gDNA_intron_boundary i_start="51004" i_stop="50730" i_length="275"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="50729" e_stop="50372" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52504" stop="52430"/>
              <exon start="51966" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316019" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51937" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51907" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51904" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51844" stop="51775"/>
              <exon start="51102" stop="51005"/>
              <exon start="50729" stop="50447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51085" stop="51005"/>
              <exon start="50729" stop="50415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213578" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGCAGAAAACCGGAGGACAGAAACTAATTGGAGGCCTTGATTGTACTGTACACCGTAACTTTTTTGGAAGCCAG : ATTCAAAGCTTTGAGACAGAACTTCCTATTCCTCAAGTCGTAGCTGAAGATGGTGGTCCTCCAAGTTTTCGTGCTGTTTTCATCCGTGCTCCGGCAATCCTTGATGTAGGACCAGACGTTGAAGTATTGTCAGACATTCCTCTATCAGCCATAGAAACTCTTAATTCCAATCCTGCTATTCAAAAGGAAGAG : GAATCTACCGAGTCTGGAAAGAAAGTAATTGTTGCTGTAAAGCAAGGGAACTTACTAGCTACTGCTTTTCATCCCGAATTAACTGCAGATACTCGATG : GCACAGTTATTTCTTGAAGATGGTGCCTGAAATCGAAGGAGGAACTTCTGATATTGTGTCAACATCCACCTCAAATCAAAGCTTCGGAACGCGTTCAATTATTGATTTTCCCATATACCAGTAGCAGAAAAAAAAATTGCTTCAAAGAAATGCAGATCATGTTAAAAGGTCAAATGGCTACTCATTGACATTGTTATGTTTTTATTTTTGTTAATTTTCATTTGCTTATCATACATTCTAAATGGTGTTCATGCTAAGACATGAAATGTTGAATGCCATTCATTGTTGTACATAATATTAAAGGATTTTCTCTCACACTCCTCATCCACAAATACAATAATAATTACGTCTCATTCCC</gDNA_template>
            <first_frame> G  Q  K  T  G  G  Q  K  L  I  G  G  L  D  C  T  V  H  R  N  F  F  G  S  Q  :  I  Q  S  F  E  T  E  L  P  I  P  Q  V  V  A  E  D  G  G  P  P  S  F  R  A  V  F  I  R  A  P  A  I  L  D  V  G  P  D  V  E  V  L  S  D  I  P  L  S  A  I  E  T  L  N  S  N  P  A  I  Q  K  E  E  :  E  S  T  E  S  G  K  K  V  I  V  A  V  K  Q  G  N  L  L  A  T  A  F  H  P  E  L  T  A  D  T  R  W :   H  S  Y  F  L  K  M  V  P  E  I  E  G  G  T  S  D  I  V  S  T  S  T  S  N  Q  S  F  G  T  R  S  I  I  D  F  P  I  Y  Q  *  Q  K  K  K  L  L  Q  R  N  A  D  H  V  K  R  S  N  G  Y  S  L  T  L  L  C  F  Y  F  C  *  F  S  F  A  Y  H  T  F  *  M  V  F  M  L  R  H  E  M  L  N  A  I  H  C  C  T  *  Y  *  R  I  F  S  H  T  P  H  P  Q  I  Q  *  *  L  R  L  I  P </first_frame>
            <second_frame>  G  R  K  P  E  D  R  N  *  L  E  A  L  I  V  L  Y  T  V  T  F  L  E  A  R :   F  K  A  L  R  Q  N  F  L  F  L  K  S  *  L  K  M  V  V  L  Q  V  F  V  L  F  S  S  V  L  R  Q  S  L  M  *  D  Q  T  L  K  Y  C  Q  T  F  L  Y  Q  P  *  K  L  L  I  P  I  L  L  F  K  R  K  R :   N  L  P  S  L  E  R  K  *  L  L  L  *  S  K  G  T  Y  *  L  L  L  F  I  P  N  *  L  Q  I  L  D   : G  T  V  I  S  *  R  W  C  L  K  S  K  E  E  L  L  I  L  C  Q  H  P  P  Q  I  K  A  S  E  R  V  Q  L  L  I  F  P  Y  T  S  S  R  K  K  N  C  F  K  E  M  Q  I  M  L  K  G  Q  M  A  T  H  *  H  C  Y  V  F  I  F  V  N  F  H  L  L  I  I  H  S  K  W  C  S  C  *  D  M  K  C  *  M  P  F  I  V  V  H  N  I  K  G  F  S  L  T  L  L  I  H  K  Y  N  N  N  Y  V  S  F   </second_frame>
            <third_frame>   A  E  N  R  R  T  E  T  N  W  R  P  *  L  Y  C  T  P  *  L  F  W  K  P   : D  S  K  L  *  D  R  T  S  Y  S  S  S  R  S  *  R  W  W  S  S  K  F  S  C  C  F  H  P  C  S  G  N  P  *  C  R  T  R  R  *  S  I  V  R  H  S  S  I  S  H  R  N  S  *  F  Q  S  C  Y  S  K  G  R   : G  I  Y  R  V  W  K  E  S  N  C  C  C  K  A  R  E  L  T  S  Y  C  F  S  S  R  I  N  C  R  Y  S  M  :  A  Q  L  F  L  E  D  G  A  *  N  R  R  R  N  F  *  Y  C  V  N  I  H  L  K  S  K  L  R  N  A  F  N  Y  *  F  S  H  I  P  V  A  E  K  K  I  A  S  K  K  C  R  S  C  *  K  V  K  W  L  L  I  D  I  V  M  F  L  F  L  L  I  F  I  C  L  S  Y  I  L  N  G  V  H  A  K  T  *  N  V  E  C  H  S  L  L  Y  I  I  L  K  D  F  L  S  H  S  S  S  T  N  T  I  I  I  T  S  H  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52504" stop="52430"/>
                    <exon start="51966" stop="51775"/>
                    <exon start="51102" stop="51005"/>
                    <exon start="50729" stop="50606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAEDGGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQKEEESTESGKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKMVPEIEGGTSDIVSTSTSNQSFGTRSIIDFPIYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58230" PGL_stop="65630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58230" e_stop="58427"/>
            <exon e_start="59658" e_stop="59891"/>
            <exon e_start="60386" e_stop="60794"/>
            <exon e_start="60966" e_stop="61040"/>
            <exon e_start="61130" e_stop="61174"/>
            <exon e_start="61717" e_stop="61793"/>
            <exon e_start="61926" e_stop="62013"/>
            <exon e_start="62100" e_stop="62224"/>
            <exon e_start="63667" e_stop="63762"/>
            <exon e_start="64085" e_stop="64151"/>
            <exon e_start="64288" e_stop="64403"/>
            <exon e_start="64488" e_stop="64566"/>
            <exon e_start="64874" e_stop="65411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="0.813"/>
          <exon-intron don_prob="0.959" acc_prob="0.707" e_score="0.996"/>
          <exon-intron don_prob="0.958" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.813">
            <gDNA_exon_boundary e_start="58230" e_stop="58427" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59658" e_stop="59891" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.707">
            <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60386" e_stop="60794" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60966" e_stop="61040" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.775">
            <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61130" e_stop="61174" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61717" e_stop="61793" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61926" e_stop="62013" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.382">
            <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62100" e_stop="62224" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63667" e_stop="63762" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64151" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64288" e_stop="64403" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64488" e_stop="64566" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307"/>
          </intron>
          <exon e_serial="13" e_score="0.935">
            <gDNA_exon_boundary e_start="64874" e_stop="65411" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58230" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58230" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58368" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58369" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59665" stop="59891"/>
              <exon start="60386" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59801" stop="59891"/>
              <exon start="60386" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59805" stop="59891"/>
              <exon start="60386" stop="60609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60480" stop="60794"/>
              <exon start="60966" stop="60994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60771" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60777" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61739" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61936" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63705" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64141" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424696" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCACCCACCAACCCACCCCCATCTCAATAATCCCTAGAAGTTTGCTCCTTTACCATTTTTTCTTGTTTTTTCCTCCCCCATCAAAATTTTATAAGATTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAG : AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG : GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG : GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG : GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG : GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGA : GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG : TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTA</gDNA_template>
            <first_frame> V  N  P  G  H  I  N  S  L  Y  G  P  L  L  P  T  H  Q  P  T  P  I  S  I  I  P  R  S  L  L  L  Y  H  F  F  L  F  F  P  P  P  S  K  F  Y  K  I  L  E  H  *  T  A  N  F  V  E  Q  E  L  I  F  P  N  F  K  :  R  C  N  P  F  V  *  *  G  S  N  S  G  D  E  W  K  I  L  A  *  H  *  S  L  V  C  C  Y  Y  K  L  E  L  S  *  C  R  G  S  I  A  Q  E  S  I  *  L  T  A  S  F  I  L  L  N  G  I  R  L  N  N  K  V  E  L  G  W  M  P  E  *  R  F  P  L  F  K  :  V  L  E  S  N  C  S  I  V  L  Y  I  S  V  L  H  W  D  V  F  S  V  I  L  D  V  C  D  D  A  F  C  *  *  S  Y  R  N  G  V  L  W  M  F  W  I  L  F  C  K  K  T  K  K  G  N  *  A  *  *  G  I  W  K  Q  L  V  T  *  T  I  V  T  T  R  G  *  R  S  R  R  *  W  L  *  *  W  R  Y  N  *  Y  W  Q  *  G  *  *  S  V  S  Q  P  G  *  T  L  S  R  D  S  H  G  K  S  S  E  W  V  N  L  Q  G  D  P  C  Q  G  N  T  Q  S  C  A  H  R   : G  *  R  W  E  Q  D  G  *  R  I  C  P  *  T  Q  N  W  C  W  *  L  R  *  S   : G  T  L  S  K  L  H  *  W  K  T  L  C  H  *   : G  L  S  Q  V  S  L  I  K  D  A  G  G  A  F  R  N  C  Y  G  *  C  S  S  *  G  :  V  S  I  M  K  M  L  C  H  P  N  I  V  N  L  V  E  V  I  D  D  P  E  T  D  N  F  Y  M   : V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *  S   </first_frame>
            <second_frame>  S  T  L  A  T  S  T  A  S  M  D  P  C  S  P  P  T  N  P  P  P  S  Q  *  S  L  E  V  C  S  F  T  I  F  S  C  F  F  L  P  H  Q  N  F  I  R  F  *  N  I  E  Q  P  I  L  L  S  K  N  *  S  F  P  T  L  R :   G  V  I  H  L  C  D  E  A  P  T  L  V  T  N  G  R  F  W  P  D  I  D  L  L  S  V  V  I  I  N  W  N  S  H  D  V  V  V  Q  S  H  R  N  Q  F  D  *  L  L  L  S  F  C  *  M  A  S  D  *  I  T  K  L  N  S  G  G  C  P  N  S  V  F  L  F  L  R :   F  L  N  Q  I  V  R  L  C  C  I  L  V  Y  S  T  G  T  Y  F  L  L  F  W  M  S  V  M  M  H  S  V  D  E  V  T  E  M  G  C  C  G  C  F  G  F  S  F  A  R  K  P  K  K  E  I  R  P  N  R  G  Y  G  N  S  W  S  H  E  P  L  L  Q  Q  E  A  E  E  V  E  D  D  G  F  D  S  G  D  I  I  D  T  G  S  E  D  D  E  V  C  H  S  P  V  K  R  Y  Q  E  I  L  M  E  R  A  Q  N  G  L  I  C  R  E  I  P  V  K  E  T  H  K  V  V  R  T  E  :  D  E  D  G  N  K  M  V  N  E  Y  V  R  E  H  K  I  G  A  G  S  Y  G  K  V  :  V  L  Y  R  S  C  T  D  G  K  H  Y  A  I  K  :  A  F  H  K  S  H  L  S  K  M  R  V  A  P  S  E  T  A  M  G  D  V  L  R  E  E :   F  R  S  *  K  C  C  A  I  P  I  *  L  I  L  L  R  *  L  M  I  Q  K  Q  I  T  S  T  W  :  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  V  </second_frame>
            <third_frame>   Q  P  W  P  H  Q  Q  P  L  W  T  L  A  P  H  P  P  T  H  P  H  L  N  N  P  *  K  F  A  P  L  P  F  F  L  V  F  S  S  P  I  K  I  L  *  D  F  R  T  L  N  S  Q  F  C  *  A  R  I  D  L  S  Q  L  *   : E  V  *  S  I  C  V  M  R  L  Q  L  W  *  R  M  E  D  S  G  L  T  L  I  S  C  L  L  L  L  *  I  G  T  L  M  M  S  W  F  N  R  T  G  I  N  L  I  N  C  F  F  H  F  A  E  W  H  P  I  E  *  Q  S  *  T  R  V  D  A  R  I  A  F  S  S  F  *   : G  S  *  I  K  L  F  D  C  A  V  Y  *  C  T  P  L  G  R  I  F  C  Y  F  G  C  L  *  *  C  I  L  L  M  K  L  Q  K  W  G  A  V  D  V  L  D  S  L  L  Q  E  N  Q  K  R  K  L  G  L  I  G  D  M  E  T  A  G  H  M  N  H  C  Y  N  K  R  L  K  K  S  K  M  M  A  L  I  V  A  I  *  L  I  L  A  V  R  M  M  K  C  V  T  A  R  L  N  V  I  K  R  F  S  W  K  E  L  R  M  G  *  F  A  G  R  S  L  S  R  K  H  T  K  L  C  A  Q  R :   M  K  M  G  T  R  W  L  T  N  M  S  V  N  T  K  L  V  L  V  A  T  V  K  W :   Y  F  I  E  V  A  L  M  E  N  I  M  P  L  R :   P  F  T  S  L  T  Y  Q  R  C  G  W  R  L  Q  K  L  L  W  V  M  F  F  V  R   : S  F  D  H  E  N  A  V  P  S  Q  Y  S  *  S  C  *  G  D  *  *  S  R  N  R  *  L  L  H  G :   S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61791" stop="61793"/>
                    <exon start="61926" stop="62013"/>
                    <exon start="62100" stop="62224"/>
                    <exon start="63667" stop="63762"/>
                    <exon start="64085" stop="64151"/>
                    <exon start="64288" stop="64403"/>
                    <exon start="64488" stop="64566"/>
                    <exon start="64874" stop="65025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSIMKMLCHPNIVNLVEVIDDPETDNFYMVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59839" stop="59891"/>
                    <exon start="60386" stop="60794"/>
                    <exon start="60966" stop="61040"/>
                    <exon start="61130" stop="61174"/>
                    <exon start="61717" stop="61793"/>
                    <exon start="61926" stop="61938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKLNSGGCPNSVFLFLRFLNQIVRLCCILVYSTGTYFLLFWMSVMMHSVDEVTEMGCCGCFGFSFARKPKKEIRPNRGYGNSWSHEPLLQQEAEEVEDDGFDSGDIIDTGSEDDEVCHSPVKRYQEILMERAQNGLICREIPVKETHKVVRTEDEDGNKMVNEYVREHKIGAGSYGKVVLYRSCTDGKHYAIKAFHKSHLSKMRVAPSETAMGDVLREEFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58230" e_stop="58427"/>
            <exon e_start="59658" e_stop="59891"/>
            <exon e_start="60386" e_stop="60794"/>
            <exon e_start="60966" e_stop="61040"/>
            <exon e_start="61130" e_stop="61174"/>
            <exon e_start="61717" e_stop="61793"/>
            <exon e_start="61926" e_stop="62013"/>
            <exon e_start="62100" e_stop="62224"/>
            <exon e_start="63667" e_stop="63762"/>
            <exon e_start="64085" e_stop="64151"/>
            <exon e_start="64288" e_stop="64403"/>
            <exon e_start="64488" e_stop="64566"/>
            <exon e_start="64874" e_stop="65407"/>
            <exon e_start="65611" e_stop="65630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="0.813"/>
          <exon-intron don_prob="0.959" acc_prob="0.707" e_score="0.996"/>
          <exon-intron don_prob="0.958" acc_prob="0.991" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.775" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.382" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.933"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.813">
            <gDNA_exon_boundary e_start="58230" e_stop="58427" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58428" i_stop="59657" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="59658" e_stop="59891" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.707">
            <gDNA_intron_boundary i_start="59892" i_stop="60385" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="60386" e_stop="60794" e_length="409"/>
          </exon>
          <intron i_serial="3" don_prob="0.958" acc_prob="0.991">
            <gDNA_intron_boundary i_start="60795" i_stop="60965" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60966" e_stop="61040" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.775">
            <gDNA_intron_boundary i_start="61041" i_stop="61129" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61130" e_stop="61174" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61175" i_stop="61716" i_length="542"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61717" e_stop="61793" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61794" i_stop="61925" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61926" e_stop="62013" e_length="88"/>
          </exon>
          <intron i_serial="7" don_prob="0.892" acc_prob="0.382">
            <gDNA_intron_boundary i_start="62014" i_stop="62099" i_length="86"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62100" e_stop="62224" e_length="125"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="63667" e_stop="63762" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64151" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="64288" e_stop="64403" e_length="116"/>
          </exon>
          <intron i_serial="11" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="64488" e_stop="64566" e_length="79"/>
          </exon>
          <intron i_serial="12" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307"/>
          </intron>
          <exon e_serial="13" e_score="0.933">
            <gDNA_exon_boundary e_start="64874" e_stop="65407" e_length="534"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="65408" i_stop="65610" i_length="203"/>
          </intron>
          <exon e_serial="14" e_score="0.550">
            <gDNA_exon_boundary e_start="65611" e_stop="65630" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58230" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58230" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58368" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58369" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58408" stop="58427"/>
              <exon start="59658" stop="59891"/>
              <exon start="60386" stop="60491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59665" stop="59891"/>
              <exon start="60386" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59801" stop="59891"/>
              <exon start="60386" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59805" stop="59891"/>
              <exon start="60386" stop="60609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60480" stop="60794"/>
              <exon start="60966" stop="60994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60771" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60777" stop="60794"/>
              <exon start="60966" stop="61040"/>
              <exon start="61130" stop="61174"/>
              <exon start="61717" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61739" stop="61793"/>
              <exon start="61926" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61936" stop="62013"/>
              <exon start="62100" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64126" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65407"/>
              <exon start="65611" stop="65630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAACCCTGGCCACATCAACAGCCTCTATGGACCCTTGCTCCCCACCCACCAACCCACCCCCATCTCAATAATCCCTAGAAGTTTGCTCCTTTACCATTTTTTCTTGTTTTTTCCTCCCCCATCAAAATTTTATAAGATTTTAGAACATTGAACAGCCAATTTTGTTGAGCAAGAATTGATCTTTCCCAACTTTAAG : AGGTGTAATCCATTTGTGTGATGAGGCTCCAACTCTGGTGACGAATGGAAGATTCTGGCCTGACATTGATCTCTTGTCTGTTGTTATTATAAATTGGAACTCTCATGATGTCGTGGTTCAATCGCACAGGAATCAATTTGATTAACTGCTTCTTTCATTTTGCTGAATGGCATCCGATTGAATAACAAAGTTGAACTCGGGTGGATGCCCGAATAGCGTTTTCCTCTTTTTAAG : GTTCTTGAATCAAATTGTTCGATTGTGCTGTATATTAGTGTACTCCACTGGGACGTATTTTCTGTTATTTTGGATGTCTGTGATGATGCATTCTGTTGATGAAGTTACAGAAATGGGGTGCTGTGGATGTTTTGGATTCTCTTTTGCAAGAAAACCAAAAAAGGAAATTAGGCCTAATAGGGGATATGGAAACAGCTGGTCACATGAACCATTGTTACAACAAGAGGCTGAAGAAGTCGAAGATGATGGCTTTGATAGTGGCGATATAATTGATACTGGCAGTGAGGATGATGAAGTGTGTCACAGCCCGGTTAAACGTTATCAAGAGATTCTCATGGAAAGAGCTCAGAATGGGTTAATTTGCAGGGAGATCCCTGTCAAGGAAACACACAAAGTTGTGCGCACAGAG : GATGAAGATGGGAACAAGATGGTTAACGAATATGTCCGTGAACACAAAATTGGTGCTGGTAGCTACGGTAAAGTG : GTACTTTATCGAAGTTGCACTGATGGAAAACATTATGCCATTAAG : GCCTTTCACAAGTCTCACTTATCAAAGATGCGGGTGGCGCCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGA : GTTTCGATCATGAAAATGCTGTGCCATCCCAATATAGTTAATCTTGTTGAGGTGATTGATGATCCAGAAACAGATAACTTCTACATGG : TTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAA : TATTACAGAGGCGGAGCCAG</gDNA_template>
            <first_frame> V  N  P  G  H  I  N  S  L  Y  G  P  L  L  P  T  H  Q  P  T  P  I  S  I  I  P  R  S  L  L  L  Y  H  F  F  L  F  F  P  P  P  S  K  F  Y  K  I  L  E  H  *  T  A  N  F  V  E  Q  E  L  I  F  P  N  F  K  :  R  C  N  P  F  V  *  *  G  S  N  S  G  D  E  W  K  I  L  A  *  H  *  S  L  V  C  C  Y  Y  K  L  E  L  S  *  C  R  G  S  I  A  Q  E  S  I  *  L  T  A  S  F  I  L  L  N  G  I  R  L  N  N  K  V  E  L  G  W  M  P  E  *  R  F  P  L  F  K  :  V  L  E  S  N  C  S  I  V  L  Y  I  S  V  L  H  W  D  V  F  S  V  I  L  D  V  C  D  D  A  F  C  *  *  S  Y  R  N  G  V  L  W  M  F  W  I  L  F  C  K  K  T  K  K  G  N  *  A  *  *  G  I  W  K  Q  L  V  T  *  T  I  V  T  T  R  G  *  R  S  R  R  *  W  L  *  *  W  R  Y  N  *  Y  W  Q  *  G  *  *  S  V  S  Q  P  G  *  T  L  S  R  D  S  H  G  K  S  S  E  W  V  N  L  Q  G  D  P  C  Q  G  N  T  Q  S  C  A  H  R   : G  *  R  W  E  Q  D  G  *  R  I  C  P  *  T  Q  N  W  C  W  *  L  R  *  S   : G  T  L  S  K  L  H  *  W  K  T  L  C  H  *   : G  L  S  Q  V  S  L  I  K  D  A  G  G  A  F  R  N  C  Y  G  *  C  S  S  *  G  :  V  S  I  M  K  M  L  C  H  P  N  I  V  N  L  V  E  V  I  D  D  P  E  T  D  N  F  Y  M   : V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *   : I  L  Q  R  R  S  Q </first_frame>
            <second_frame>  S  T  L  A  T  S  T  A  S  M  D  P  C  S  P  P  T  N  P  P  P  S  Q  *  S  L  E  V  C  S  F  T  I  F  S  C  F  F  L  P  H  Q  N  F  I  R  F  *  N  I  E  Q  P  I  L  L  S  K  N  *  S  F  P  T  L  R :   G  V  I  H  L  C  D  E  A  P  T  L  V  T  N  G  R  F  W  P  D  I  D  L  L  S  V  V  I  I  N  W  N  S  H  D  V  V  V  Q  S  H  R  N  Q  F  D  *  L  L  L  S  F  C  *  M  A  S  D  *  I  T  K  L  N  S  G  G  C  P  N  S  V  F  L  F  L  R :   F  L  N  Q  I  V  R  L  C  C  I  L  V  Y  S  T  G  T  Y  F  L  L  F  W  M  S  V  M  M  H  S  V  D  E  V  T  E  M  G  C  C  G  C  F  G  F  S  F  A  R  K  P  K  K  E  I  R  P  N  R  G  Y  G  N  S  W  S  H  E  P  L  L  Q  Q  E  A  E  E  V  E  D  D  G  F  D  S  G  D  I  I  D  T  G  S  E  D  D  E  V  C  H  S  P  V  K  R  Y  Q  E  I  L  M  E  R  A  Q  N  G  L  I  C  R  E  I  P  V  K  E  T  H  K  V  V  R  T  E  :  D  E  D  G  N  K  M  V  N  E  Y  V  R  E  H  K  I  G  A  G  S  Y  G  K  V  :  V  L  Y  R  S  C  T  D  G  K  H  Y  A  I  K  :  A  F  H  K  S  H  L  S  K  M  R  V  A  P  S  E  T  A  M  G  D  V  L  R  E  E :   F  R  S  *  K  C  C  A  I  P  I  *  L  I  L  L  R  *  L  M  I  Q  K  Q  I  T  S  T  W  :  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  :  Y  Y  R  G  G  A   </second_frame>
            <third_frame>   Q  P  W  P  H  Q  Q  P  L  W  T  L  A  P  H  P  P  T  H  P  H  L  N  N  P  *  K  F  A  P  L  P  F  F  L  V  F  S  S  P  I  K  I  L  *  D  F  R  T  L  N  S  Q  F  C  *  A  R  I  D  L  S  Q  L  *   : E  V  *  S  I  C  V  M  R  L  Q  L  W  *  R  M  E  D  S  G  L  T  L  I  S  C  L  L  L  L  *  I  G  T  L  M  M  S  W  F  N  R  T  G  I  N  L  I  N  C  F  F  H  F  A  E  W  H  P  I  E  *  Q  S  *  T  R  V  D  A  R  I  A  F  S  S  F  *   : G  S  *  I  K  L  F  D  C  A  V  Y  *  C  T  P  L  G  R  I  F  C  Y  F  G  C  L  *  *  C  I  L  L  M  K  L  Q  K  W  G  A  V  D  V  L  D  S  L  L  Q  E  N  Q  K  R  K  L  G  L  I  G  D  M  E  T  A  G  H  M  N  H  C  Y  N  K  R  L  K  K  S  K  M  M  A  L  I  V  A  I  *  L  I  L  A  V  R  M  M  K  C  V  T  A  R  L  N  V  I  K  R  F  S  W  K  E  L  R  M  G  *  F  A  G  R  S  L  S  R  K  H  T  K  L  C  A  Q  R :   M  K  M  G  T  R  W  L  T  N  M  S  V  N  T  K  L  V  L  V  A  T  V  K  W :   Y  F  I  E  V  A  L  M  E  N  I  M  P  L  R :   P  F  T  S  L  T  Y  Q  R  C  G  W  R  L  Q  K  L  L  W  V  M  F  F  V  R   : S  F  D  H  E  N  A  V  P  S  Q  Y  S  *  S  C  *  G  D  *  *  S  R  N  R  *  L  L  H  G :   S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  N :   I  T  E  A  E  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61791" stop="61793"/>
                    <exon start="61926" stop="62013"/>
                    <exon start="62100" stop="62224"/>
                    <exon start="63667" stop="63762"/>
                    <exon start="64085" stop="64151"/>
                    <exon start="64288" stop="64403"/>
                    <exon start="64488" stop="64566"/>
                    <exon start="64874" stop="65025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVSIMKMLCHPNIVNLVEVIDDPETDNFYMVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59839" stop="59891"/>
                    <exon start="60386" stop="60794"/>
                    <exon start="60966" stop="61040"/>
                    <exon start="61130" stop="61174"/>
                    <exon start="61717" stop="61793"/>
                    <exon start="61926" stop="61938"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITKLNSGGCPNSVFLFLRFLNQIVRLCCILVYSTGTYFLLFWMSVMMHSVDEVTEMGCCGCFGFSFARKPKKEIRPNRGYGNSWSHEPLLQQEAEEVEDDGFDSGDIIDTGSEDDEVCHSPVKRYQEILMERAQNGLICREIPVKETHKVVRTEDEDGNKMVNEYVREHKIGAGSYGKVVLYRSCTDGKHYAIKAFHKSHLSKMRVAPSETAMGDVLREEFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62096" e_stop="62224"/>
            <exon e_start="63667" e_stop="63762"/>
            <exon e_start="64085" e_stop="64151"/>
            <exon e_start="64288" e_stop="64403"/>
            <exon e_start="64488" e_stop="64566"/>
            <exon e_start="64874" e_stop="65411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.227" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62096" e_stop="62224" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="62225" i_stop="63666" i_length="1442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63667" e_stop="63762" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63763" i_stop="64084" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64085" e_stop="64151" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64152" i_stop="64287" i_length="136"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64288" e_stop="64403" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="0.589" acc_prob="0.950">
            <gDNA_intron_boundary i_start="64404" i_stop="64487" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64488" e_stop="64566" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.227">
            <gDNA_intron_boundary i_start="64567" i_stop="64873" i_length="307"/>
          </intron>
          <exon e_serial="6" e_score="0.935">
            <gDNA_exon_boundary e_start="64874" e_stop="65411" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62096" stop="62224"/>
              <exon start="63667" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63691" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63705" stop="63762"/>
              <exon start="64085" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64141" stop="64151"/>
              <exon start="64288" stop="64403"/>
              <exon start="64488" stop="64566"/>
              <exon start="64874" stop="65411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424696" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGTTCTCGAGTACGTGGAAGGAAAATGGGTTTGTGAAGATTCTGGTCCCCCGTGTGTTCTTGAAGAAAATAAAGCACGGCTGTACTTGCGTGATATAGTGTCTGGCTTGATGTATCTGCATTCTCAT : AATATCATACATGGGGATATTAAGCCAGACAATCTTTTAGTGTCTGCTGCTGGTAAGGTGAAGATTGGTGATTTCAGCGTCAGCCAAGTTTTTGAG : GATGATAATGATAAACTCCGTCGATCTCCTGGCACTCCTGTTTTCACTGCTCCTGAATGCTGCGTAG : GAGATAGATATCATGGAAAATGTGCTGACACGTGGGCGGTTGGTGTTACCCTTTATTGCATGATCTTGGGAAAATACCCGTTTCTAGGAGAAACTCTCCAGGATACATATGACAAG : ATAGTAAATAACCCCATCATTCTCCCCGACGATATGAATCCGTTACTGAAGAATTTATTAGAGGGGCTTCTCTGCAAAG : ATCCAACACAAAGGCTAACTCTCGAAAGTGTTTGTCAACACGAGTGGTTCCTAGGAGATGAAGGCCCCATCCCTCAGTTCTCGTGTTGGTGCCAGCGCCAAAAGTTGCAGAAAGACGTACAGGATGGGAGCGCAGAGGATACCCCTACTTGAACTAACTGCAGAGTGTTTCTAGTATGTTTATAACGTTCCGTTCTCTCTTCTCAGTTCTTGTAGGAAGATAAACTAGGATGTCTTTTTTTCCCCGGCAAATTGCATCTTGCAGGAGCAATCGGATACATGTTATGTGAACGATAGTAGAAAATGAGGTGTTCGAGTAAATTTTGTTTGGTTTCTGTCATACTCCGAGAGTACTCGTTCAGTTGTAATGGCAGCGAGACATCGCGATATGTTTTCGTTGTTTTTTTTGTTGGTAATGATGGTACAAGTTTTGTGTTTTGATGCTTAGAAGAAAGCCAACATATTTGTTTTTGTGGATATTTGTATGTGTTTTTTTTATATGAAGAAGAATTTTCATATGATAGTGTAAAGTAAAGTTA</gDNA_template>
            <first_frame> K  V  L  E  Y  V  E  G  K  W  V  C  E  D  S  G  P  P  C  V  L  E  E  N  K  A  R  L  Y  L  R  D  I  V  S  G  L  M  Y  L  H  S  H  :  N  I  I  H  G  D  I  K  P  D  N  L  L  V  S  A  A  G  K  V  K  I  G  D  F  S  V  S  Q  V  F  E  :  D  D  N  D  K  L  R  R  S  P  G  T  P  V  F  T  A  P  E  C  C  V   : G  D  R  Y  H  G  K  C  A  D  T  W  A  V  G  V  T  L  Y  C  M  I  L  G  K  Y  P  F  L  G  E  T  L  Q  D  T  Y  D  K  :  I  V  N  N  P  I  I  L  P  D  D  M  N  P  L  L  K  N  L  L  E  G  L  L  C  K   : D  P  T  Q  R  L  T  L  E  S  V  C  Q  H  E  W  F  L  G  D  E  G  P  I  P  Q  F  S  C  W  C  Q  R  Q  K  L  Q  K  D  V  Q  D  G  S  A  E  D  T  P  T  *  T  N  C  R  V  F  L  V  C  L  *  R  S  V  L  S  S  Q  F  L  *  E  D  K  L  G  C  L  F  F  P  G  K  L  H  L  A  G  A  I  G  Y  M  L  C  E  R  *  *  K  M  R  C  S  S  K  F  C  L  V  S  V  I  L  R  E  Y  S  F  S  C  N  G  S  E  T  S  R  Y  V  F  V  V  F  F  V  G  N  D  G  T  S  F  V  F  *  C  L  E  E  S  Q  H  I  C  F  C  G  Y  L  Y  V  F  F  L  Y  E  E  E  F  S  Y  D  S  V  K  *  S   </first_frame>
            <second_frame>  K  F  S  S  T  W  K  E  N  G  F  V  K  I  L  V  P  R  V  F  L  K  K  I  K  H  G  C  T  C  V  I  *  C  L  A  *  C  I  C  I  L  I :   I  S  Y  M  G  I  L  S  Q  T  I  F  *  C  L  L  L  V  R  *  R  L  V  I  S  A  S  A  K  F  L  R :   M  I  M  I  N  S  V  D  L  L  A  L  L  F  S  L  L  L  N  A  A  *  :  E  I  D  I  M  E  N  V  L  T  R  G  R  L  V  L  P  F  I  A  *  S  W  E  N  T  R  F  *  E  K  L  S  R  I  H  M  T  R :   *  *  I  T  P  S  F  S  P  T  I  *  I  R  Y  *  R  I  Y  *  R  G  F  S  A  K  :  I  Q  H  K  G  *  L  S  K  V  F  V  N  T  S  G  S  *  E  M  K  A  P  S  L  S  S  R  V  G  A  S  A  K  S  C  R  K  T  Y  R  M  G  A  Q  R  I  P  L  L  E  L  T  A  E  C  F  *  Y  V  Y  N  V  P  F  S  L  L  S  S  C  R  K  I  N  *  D  V  F  F  S  P  A  N  C  I  L  Q  E  Q  S  D  T  C  Y  V  N  D  S  R  K  *  G  V  R  V  N  F  V  W  F  L  S  Y  S  E  S  T  R  S  V  V  M  A  A  R  H  R  D  M  F  S  L  F  F  L  L  V  M  M  V  Q  V  L  C  F  D  A  *  K  K  A  N  I  F  V  F  V  D  I  C  M  C  F  F  Y  M  K  K  N  F  H  M  I  V  *  S  K  V  </second_frame>
            <third_frame>   S  S  R  V  R  G  R  K  M  G  L  *  R  F  W  S  P  V  C  S  *  R  K  *  S  T  A  V  L  A  *  Y  S  V  W  L  D  V  S  A  F  S   : *  Y  H  T  W  G  Y  *  A  R  Q  S  F  S  V  C  C  W  *  G  E  D  W  *  F  Q  R  Q  P  S  F  *   : G  *  *  *  *  T  P  S  I  S  W  H  S  C  F  H  C  S  *  M  L  R  R :   R  *  I  S  W  K  M  C  *  H  V  G  G  W  C  Y  P  L  L  H  D  L  G  K  I  P  V  S  R  R  N  S  P  G  Y  I  *  Q   : D  S  K  *  P  H  H  S  P  R  R  Y  E  S  V  T  E  E  F  I  R  G  A  S  L  Q  R :   S  N  T  K  A  N  S  R  K  C  L  S  T  R  V  V  P  R  R  *  R  P  H  P  S  V  L  V  L  V  P  A  P  K  V  A  E  R  R  T  G  W  E  R  R  G  Y  P  Y  L  N  *  L  Q  S  V  S  S  M  F  I  T  F  R  S  L  F  S  V  L  V  G  R  *  T  R  M  S  F  F  P  R  Q  I  A  S  C  R  S  N  R  I  H  V  M  *  T  I  V  E  N  E  V  F  E  *  I  L  F  G  F  C  H  T  P  R  V  L  V  Q  L  *  W  Q  R  D  I  A  I  C  F  R  C  F  F  C  W  *  *  W  Y  K  F  C  V  L  M  L  R  R  K  P  T  Y  L  F  L  W  I  F  V  C  V  F  F  I  *  R  R  I  F  I  *  *  C  K  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62096" stop="62224"/>
                    <exon start="63667" stop="63762"/>
                    <exon start="64085" stop="64151"/>
                    <exon start="64288" stop="64403"/>
                    <exon start="64488" stop="64566"/>
                    <exon start="64874" stop="65025"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVLEYVEGKWVCEDSGPPCVLEENKARLYLRDIVSGLMYLHSHNIIHGDIKPDNLLVSAAGKVKIGDFSVSQVFEDDNDKLRRSPGTPVFTAPECCVGDRYHGKCADTWAVGVTLYCMILGKYPFLGETLQDTYDKIVNNPIILPDDMNPLLKNLLEGLLCKDPTQRLTLESVCQHEWFLGDEGPIPQFSCWCQRQKLQKDVQDGSAEDTPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="58453" e_stop="58977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="58453" e_stop="58977" e_length="525"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58453" stop="58977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58454" stop="58717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364143" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATCTTGGAAAAAGATTGTGTTTTTAATTGATTTTGATTGTTGTTATGAACAATTATTAGGAGAAAGATTGAAGCTTTTGATGTTTTTAGATTTCTTTCAAAGAATCTTGGAAAAAGATTGTATTTTTATGAGCAATTGTTAGGAGAATGATTGAACCATTTGATGGTTTTGATTTCCTATAAAGAATATTGATAGAAGATTGTTTTTTATTGGGTTTGATTGTTTTATGAACAATTGTTAGGAGGATGATTGAACCTTTGAATGGTTTTGATTGTCCCCAAAGAATCTTGGAAAGAGATTGTATTTTTATTGGTTTTGATTGTTTTTATGGAAATTTGTATGGAGAATGACTGAACCCTTTGATGGTTTTGATTTACTATAAAGTGTCTTGGGAAATATATGGTTTTTATTGGTTTTGATCATTTTTCTGAAAACATTGTGATCCAAATGATAGAACCTTTTGATGTTTTTAATTTTCTACAAAGAATTTTGGGAAAATATTGTATTTTTGTAGGTTTTGATTG</gDNA_template>
            <first_frame> N  L  G  K  R  L  C  F  *  L  I  L  I  V  V  M  N  N  Y  *  E  K  D  *  S  F  *  C  F  *  I  S  F  K  E  S  W  K  K  I  V  F  L  *  A  I  V  R  R  M  I  E  P  F  D  G  F  D  F  L  *  R  I  L  I  E  D  C  F  L  L  G  L  I  V  L  *  T  I  V  R  R  M  I  E  P  L  N  G  F  D  C  P  Q  R  I  L  E  R  D  C  I  F  I  G  F  D  C  F  Y  G  N  L  Y  G  E  *  L  N  P  L  M  V  L  I  Y  Y  K  V  S  W  E  I  Y  G  F  Y  W  F  *  S  F  F  *  K  H  C  D  P  N  D  R  T  F  *  C  F  *  F  S  T  K  N  F  G  K  I  L  Y  F  C  R  F  *  L </first_frame>
            <second_frame>  I  L  E  K  D  C  V  F  N  *  F  *  L  L  L  *  T  I  I  R  R  K  I  E  A  F  D  V  F  R  F  L  S  K  N  L  G  K  R  L  Y  F  Y  E  Q  L  L  G  E  *  L  N  H  L  M  V  L  I  S  Y  K  E  Y  *  *  K  I  V  F  Y  W  V  *  L  F  Y  E  Q  L  L  G  G  *  L  N  L  *  M  V  L  I  V  P  K  E  S  W  K  E  I  V  F  L  L  V  L  I  V  F  M  E  I  C  M  E  N  D  *  T  L  *  W  F  *  F  T  I  K  C  L  G  K  Y  M  V  F  I  G  F  D  H  F  S  E  N  I  V  I  Q  M  I  E  P  F  D  V  F  N  F  L  Q  R  I  L  G  K  Y  C  I  F  V  G  F  D   </second_frame>
            <third_frame>   S  W  K  K  I  V  F  L  I  D  F  D  C  C  Y  E  Q  L  L  G  E  R  L  K  L  L  M  F  L  D  F  F  Q  R  I  L  E  K  D  C  I  F  M  S  N  C  *  E  N  D  *  T  I  *  W  F  *  F  P  I  K  N  I  D  R  R  L  F  F  I  G  F  D  C  F  M  N  N  C  *  E  D  D  *  T  F  E  W  F  *  L  S  P  K  N  L  G  K  R  L  Y  F  Y  W  F  *  L  F  L  W  K  F  V  W  R  M  T  E  P  F  D  G  F  D  L  L  *  S  V  L  G  N  I  W  F  L  L  V  L  I  I  F  L  K  T  L  *  S  K  *  *  N  L  L  M  F  L  I  F  Y  K  E  F  W  E  N  I  V  F  L  *  V  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65374" PGL_stop="64898"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65374" e_stop="64898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="65374" e_stop="64898" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65374" stop="64898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587521" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATAAAAAAAACACATACAAATATCCACAAAAACAAATATGTTGGCTTTCTTCTAAGCATCAAAACACAAAACTTGTACCATCATTACCAACAAAAAAAACAACGAAAACATATCGCGATGTCTCGCTGCCATTACAACTGAACGAGTACTCTCGGAGTATGACAGAAACCAAACAAAATTTACTCGAACACCTCATTTTCTACTATCGTTCACATAACATGTATCCGATTGCTCCTGCAAGATGCAATTTGCCGGGGAAAAAAAGACATCCTAGTTTATCTTCCTACAAGAACTGAGAAGAGAGAACGGAACGTTATAAACATACTAGAAACACTCTGCAGTTAGTTCAAGTAGGGGTATCCTCTGCGCTCCCATCCTGTACGTCTTTCTGCAACTTTTGGCGCTGGCACCAACACGAGAACTGAGGGATGGGGCCTTCATCTCCTAGGAACCACTCGTGTTGACAAACACTTT</gDNA_template>
            <first_frame> H  I  K  K  T  H  T  N  I  H  K  N  K  Y  V  G  F  L  L  S  I  K  T  Q  N  L  Y  H  H  Y  Q  Q  K  K  Q  R  K  H  I  A  M  S  R  C  H  Y  N  *  T  S  T  L  G  V  *  Q  K  P  N  K  I  Y  S  N  T  S  F  S  T  I  V  H  I  T  C  I  R  L  L  L  Q  D  A  I  C  R  G  K  K  D  I  L  V  Y  L  P  T  R  T  E  K  R  E  R  N  V  I  N  I  L  E  T  L  C  S  *  F  K  *  G  Y  P  L  R  S  H  P  V  R  L  S  A  T  F  G  A  G  T  N  T  R  T  E  G  W  G  L  H  L  L  G  T  T  R  V  D  K  H  F </first_frame>
            <second_frame>  I  *  K  K  H  I  Q  I  S  T  K  T  N  M  L  A  F  F  *  A  S  K  H  K  T  C  T  I  I  T  N  K  K  N  N  E  N  I  S  R  C  L  A  A  I  T  T  E  R  V  L  S  E  Y  D  R  N  Q  T  K  F  T  R  T  P  H  F  L  L  S  F  T  *  H  V  S  D  C  S  C  K  M  Q  F  A  G  E  K  K  T  S  *  F  I  F  L  Q  E  L  R  R  E  N  G  T  L  *  T  Y  *  K  H  S  A  V  S  S  S  R  G  I  L  C  A  P  I  L  Y  V  F  L  Q  L  L  A  L  A  P  T  R  E  L  R  D  G  A  F  I  S  *  E  P  L  V  L  T  N  T   </second_frame>
            <third_frame>   Y  K  K  N  T  Y  K  Y  P  Q  K  Q  I  C  W  L  S  S  K  H  Q  N  T  K  L  V  P  S  L  P  T  K  K  T  T  K  T  Y  R  D  V  S  L  P  L  Q  L  N  E  Y  S  R  S  M  T  E  T  K  Q  N  L  L  E  H  L  I  F  Y  Y  R  S  H  N  M  Y  P  I  A  P  A  R  C  N  L  P  G  K  K  R  H  P  S  L  S  S  Y  K  N  *  E  E  R  T  E  R  Y  K  H  T  R  N  T  L  Q  L  V  Q  V  G  V  S  S  A  L  P  S  C  T  S  F  C  N  F  W  R  W  H  Q  H  E  N  *  G  M  G  P  S  S  P  R  N  H  S  C  *  Q  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65372" stop="65076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKKNTYKYPQKQICWLSSKHQNTKLVPSLPTKKTTKTYRDVSLPLQLNEYSRSMTETKQNLLEHLIFYYRSHNMYPIAPARCNLPGKKRHPSLSSYKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68642" PGL_stop="70627"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68642" e_stop="68829"/>
            <exon e_start="69668" e_stop="70627"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68642" e_stop="68829" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68830" i_stop="69667" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69668" e_stop="70627" e_length="960"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68642" stop="68829"/>
              <exon start="69668" stop="70019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69909" stop="70476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69927" stop="70495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69951" stop="70505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70063" stop="70627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCTCTCTCTAAAAATTCCGGTGAGATGGTCGCCGTAAGTTCGTTTTCCGGCGAATATCCCGGCGTTATAGTTACCTGTGATCGGATCGAAACTTACTTCACTCCAGCAATGGAATAATCACCACACTGGTTTTTATCTCCGGCGACGCTAATTTGCGACTGGCAGAAATAAGCAGCTGGATTTCCG : ATAAGGAGTCATTAGCGGTTGGTAGTGAATTACTGGTTTTTGGCCGTGAGTTATTTGATTTTGCTATATGGAAATACAGTTTGATTCAAAACAACTGGGAAAAATGTGAAGGGATGAATCATCGTCGTTGTCTGTTTGGATCGGGTAGTCTTGGTTCAATTTCTATTGTTGCAGGGGGTAGTGACAAGAATGGGAATGTACTAAAATCTGCCGAGCTTTATGATTCTTTGACTGGTACATGGGAAATACTGCCCAACATGCATTCTCCCCGCAGATTATGCTCTGGCTTTTTCATGGATGGAAAATTTTATGTGATAGGTGGGATGACTAATCCTACCGATTCTTTGACTTGTGGGGAAGAGTTTGATCTACAAACAAGGAAGTGGAGGAAAATTGAGGGCATGTATCCAAACGTCAATAGAGCTGCTCAGGCACCTCCTCTTGTTGCAGTTGTTAATAACCAACTATATGCAGTTGAATATCTAACCAACATGGTTAAGAAGTATGACAAGAAAAATAACTCATGGGAGGTATTGGGAAGACTTCCCGTGAGGGCTGATTCTTCGAATGGTTGGGGTCTTGCTTTCAAAGCATGTGGTGAAGAACTTCTTGTGGTAGGTGGCAACAGGGGTCCAGAAGGTGAAGCTATTATATTGAGTTCTTGGGCACCAAAATCAGGGTGTAAAGACGGCACCTTGGATTGGAAGGTCATCGGCCTAAAAGAGCATTCTGGTGTCTTTGTATACAATTGTGCCGTGATGGGTTGTTGAGACTCATCCAACCAAATGGAGAAAGAAGTCATTTGTTTCAACTGTTGTTTCTAGCGTAATTCCAACACATTGTTTGATTTATTAGCATTTCTTTTTATTTAACATCTTTCAGGTGTTTGAGATAAGCAGTTGTTCTTAGCTAAAATGTCCTCTTAACTGGATGGTTATTTTCACTCACTCATTCTGCAGA</gDNA_template>
            <first_frame> I  L  S  L  K  I  P  V  R  W  S  P  *  V  R  F  P  A  N  I  P  A  L  *  L  P  V  I  G  S  K  L  T  S  L  Q  Q  W  N  N  H  H  T  G  F  Y  L  R  R  R  *  F  A  T  G  R  N  K  Q  L  D  F  R :   *  G  V  I  S  G  W  *  *  I  T  G  F  W  P  *  V  I  *  F  C  Y  M  E  I  Q  F  D  S  K  Q  L  G  K  M  *  R  D  E  S  S  S  L  S  V  W  I  G  *  S  W  F  N  F  Y  C  C  R  G  *  *  Q  E  W  E  C  T  K  I  C  R  A  L  *  F  F  D  W  Y  M  G  N  T  A  Q  H  A  F  S  P  Q  I  M  L  W  L  F  H  G  W  K  I  L  C  D  R  W  D  D  *  S  Y  R  F  F  D  L  W  G  R  V  *  S  T  N  K  E  V  E  E  N  *  G  H  V  S  K  R  Q  *  S  C  S  G  T  S  S  C  C  S  C  *  *  P  T  I  C  S  *  I  S  N  Q  H  G  *  E  V  *  Q  E  K  *  L  M  G  G  I  G  K  T  S  R  E  G  *  F  F  E  W  L  G  S  C  F  Q  S  M  W  *  R  T  S  C  G  R  W  Q  Q  G  S  R  R  *  S  Y  Y  I  E  F  L  G  T  K  I  R  V  *  R  R  H  L  G  L  E  G  H  R  P  K  R  A  F  W  C  L  C  I  Q  L  C  R  D  G  L  L  R  L  I  Q  P  N  G  E  R  S  H  L  F  Q  L  L  F  L  A  *  F  Q  H  I  V  *  F  I  S  I  S  F  Y  L  T  S  F  R  C  L  R  *  A  V  V  L  S  *  N  V  L  L  T  G  W  L  F  S  L  T  H  S  A   </first_frame>
            <second_frame>  F  S  L  *  K  F  R  *  D  G  R  R  K  F  V  F  R  R  I  S  R  R  Y  S  Y  L  *  S  D  R  N  L  L  H  S  S  N  G  I  I  T  T  L  V  F  I  S  G  D  A  N  L  R  L  A  E  I  S  S  W  I  S   : D  K  E  S  L  A  V  G  S  E  L  L  V  F  G  R  E  L  F  D  F  A  I  W  K  Y  S  L  I  Q  N  N  W  E  K  C  E  G  M  N  H  R  R  C  L  F  G  S  G  S  L  G  S  I  S  I  V  A  G  G  S  D  K  N  G  N  V  L  K  S  A  E  L  Y  D  S  L  T  G  T  W  E  I  L  P  N  M  H  S  P  R  R  L  C  S  G  F  F  M  D  G  K  F  Y  V  I  G  G  M  T  N  P  T  D  S  L  T  C  G  E  E  F  D  L  Q  T  R  K  W  R  K  I  E  G  M  Y  P  N  V  N  R  A  A  Q  A  P  P  L  V  A  V  V  N  N  Q  L  Y  A  V  E  Y  L  T  N  M  V  K  K  Y  D  K  K  N  N  S  W  E  V  L  G  R  L  P  V  R  A  D  S  S  N  G  W  G  L  A  F  K  A  C  G  E  E  L  L  V  V  G  G  N  R  G  P  E  G  E  A  I  I  L  S  S  W  A  P  K  S  G  C  K  D  G  T  L  D  W  K  V  I  G  L  K  E  H  S  G  V  F  V  Y  N  C  A  V  M  G  C  *  D  S  S  N  Q  M  E  K  E  V  I  C  F  N  C  C  F  *  R  N  S  N  T  L  F  D  L  L  A  F  L  F  I  *  H  L  S  G  V  *  D  K  Q  L  F  L  A  K  M  S  S  *  L  D  G  Y  F  H  S  L  I  L  Q  </second_frame>
            <third_frame>   S  L  S  K  N  S  G  E  M  V  A  V  S  S  F  S  G  E  Y  P  G  V  I  V  T  C  D  R  I  E  T  Y  F  T  P  A  M  E  *  S  P  H  W  F  L  S  P  A  T  L  I  C  D  W  Q  K  *  A  A  G  F  P  :  I  R  S  H  *  R  L  V  V  N  Y  W  F  L  A  V  S  Y  L  I  L  L  Y  G  N  T  V  *  F  K  T  T  G  K  N  V  K  G  *  I  I  V  V  V  C  L  D  R  V  V  L  V  Q  F  L  L  L  Q  G  V  V  T  R  M  G  M  Y  *  N  L  P  S  F  M  I  L  *  L  V  H  G  K  Y  C  P  T  C  I  L  P  A  D  Y  A  L  A  F  S  W  M  E  N  F  M  *  *  V  G  *  L  I  L  P  I  L  *  L  V  G  K  S  L  I  Y  K  Q  G  S  G  G  K  L  R  A  C  I  Q  T  S  I  E  L  L  R  H  L  L  L  L  Q  L  L  I  T  N  Y  M  Q  L  N  I  *  P  T  W  L  R  S  M  T  R  K  I  T  H  G  R  Y  W  E  D  F  P  *  G  L  I  L  R  M  V  G  V  L  L  S  K  H  V  V  K  N  F  L  W  *  V  A  T  G  V  Q  K  V  K  L  L  Y  *  V  L  G  H  Q  N  Q  G  V  K  T  A  P  W  I  G  R  S  S  A  *  K  S  I  L  V  S  L  Y  T  I  V  P  *  W  V  V  E  T  H  P  T  K  W  R  K  K  S  F  V  S  T  V  V  S  S  V  I  P  T  H  C  L  I  Y  *  H  F  F  L  F  N  I  F  Q  V  F  E  I  S  S  C  S  *  L  K  C  P  L  N  W  M  V  I  F  T  H  S  F  C  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68724" stop="68829"/>
                    <exon start="69668" stop="70437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDRNLLHSSNGIITTLVFISGDANLRLAEISSWISDKESLAVGSELLVFGRELFDFAIWKYSLIQNNWEKCEGMNHRRCLFGSGSLGSISIVAGGSDKNGNVLKSAELYDSLTGTWEILPNMHSPRRLCSGFFMDGKFYVIGGMTNPTDSLTCGEEFDLQTRKWRKIEGMYPNVNRAAQAPPLVAVVNNQLYAVEYLTNMVKKYDKKNNSWEVLGRLPVRADSSNGWGLAFKACGEELLVVGGNRGPEGEAIILSSWAPKSGCKDGTLDWKVIGLKEHSGVFVYNCAVMGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="70690" PGL_stop="70149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70690" e_stop="70149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="70690" e_stop="70149" e_length="542"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70690" stop="70149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGTGAATCAACCATATTAACTCAATGAACAAGGTGAAAACCGAAATCTGGAAGCAAACAGTCTGCAGAATGAGTGAGTGAAAATAACCATCCAGTTAAGAGGACATTTTAGCTAAGAACAACTGCTTATCTCAAACACCTGAAAGATGTTAAATAAAAAGAAATGCTAATAAATCAAACAATGTGTTGGAATTACGCTAGAAACAACAGTTGAAACAAATGACTTCTTTCTCCATTTGGTTGGATGAGTCTCAACAACCCATCACGGCACAATTGTATACAAAGACACCAGAATGCTCTTTTAGGCCGATGACCTTCCAATCCAAGGTGCCGTCTTTACACCCTGATTTTGGTGCCCAAGAACTCAATATAATAGCTTCACCTTCTGGACCCCTGTTGCCACCTACCACAAGAAGTTCTTCACCACATGCTTTGAAAGCAAGACCCCAACCATTCGAAGAATCAGCCCTCACGGGAAGTCTTCCCAATACCTCCCATGAGTTATTTTTCTTGTCATACTTCTTAACCATGTTGGTTAGA</gDNA_template>
            <first_frame> I  S  E  S  T  I  L  T  Q  *  T  R  *  K  P  K  S  G  S  K  Q  S  A  E  *  V  S  E  N  N  H  P  V  K  R  T  F  *  L  R  T  T  A  Y  L  K  H  L  K  D  V  K  *  K  E  M  L  I  N  Q  T  M  C  W  N  Y  A  R  N  N  S  *  N  K  *  L  L  S  P  F  G  W  M  S  L  N  N  P  S  R  H  N  C  I  Q  R  H  Q  N  A  L  L  G  R  *  P  S  N  P  R  C  R  L  Y  T  L  I  L  V  P  K  N  S  I  *  *  L  H  L  L  D  P  C  C  H  L  P  Q  E  V  L  H  H  M  L  *  K  Q  D  P  N  H  S  K  N  Q  P  S  R  E  V  F  P  I  P  P  M  S  Y  F  S  C  H  T  S  *  P  C  W  L   </first_frame>
            <second_frame>  S  V  N  Q  P  Y  *  L  N  E  Q  G  E  N  R  N  L  E  A  N  S  L  Q  N  E  *  V  K  I  T  I  Q  L  R  G  H  F  S  *  E  Q  L  L  I  S  N  T  *  K  M  L  N  K  K  K  C  *  *  I  K  Q  C  V  G  I  T  L  E  T  T  V  E  T  N  D  F  F  L  H  L  V  G  *  V  S  T  T  H  H  G  T  I  V  Y  K  D  T  R  M  L  F  *  A  D  D  L  P  I  Q  G  A  V  F  T  P  *  F  W  C  P  R  T  Q  Y  N  S  F  T  F  W  T  P  V  A  T  Y  H  K  K  F  F  T  T  C  F  E  S  K  T  P  T  I  R  R  I  S  P  H  G  K  S  S  Q  Y  L  P  *  V  I  F  L  V  I  L  L  N  H  V  G  *  </second_frame>
            <third_frame>   Q  *  I  N  H  I  N  S  M  N  K  V  K  T  E  I  W  K  Q  T  V  C  R  M  S  E  *  K  *  P  S  S  *  E  D  I  L  A  K  N  N  C  L  S  Q  T  P  E  R  C  *  I  K  R  N  A  N  K  S  N  N  V  L  E  L  R  *  K  Q  Q  L  K  Q  M  T  S  F  S  I  W  L  D  E  S  Q  Q  P  I  T  A  Q  L  Y  T  K  T  P  E  C  S  F  R  P  M  T  F  Q  S  K  V  P  S  L  H  P  D  F  G  A  Q  E  L  N  I  I  A  S  P  S  G  P  L  L  P  P  T  T  R  S  S  S  P  H  A  L  K  A  R  P  Q  P  F  E  E  S  A  L  T  G  S  L  P  N  T  S  H  E  L  F  F  L  S  Y  F  L  T  M  L  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70487" stop="70149"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQQLKQMTSFSIWLDESQQPITAQLYTKTPECSFRPMTFQSKVPSLHPDFGAQELNIIASPSGPLLPPTTRSSSPHALKARPQPFEESALTGSLPNTSHELFFLSYFLTMLVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="75577" PGL_stop="73945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75577" e_stop="73945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="75577" e_stop="73945" e_length="1633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75577" stop="74692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75568" stop="74849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75568" stop="74958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75428" stop="74945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75424" stop="75139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75422" stop="74957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75418" stop="75113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75379" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75253" stop="74863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74886" stop="74152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74755" stop="74074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74710" stop="74213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74667" stop="73967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74667" stop="74065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74631" stop="73974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74630" stop="74009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="73945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="73945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74578" stop="73959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74518" stop="73969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74169" stop="73974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTGATTGTGAAAGGGTTCTTGTTTGTTACTGTTATGATTCTTGTGTCATTTGTTCAAATGACACATATGATTCAGAAATCTGAACCTATAATGTTGAATTTTGGTGTATGCCCTTTGAACTTTGGGTCTAATGAGTATATGAATGTGACCGGGTTCGTTAAACCTGTTTCTGGATTGGGGATTTCGCTGTTTGGAGCTTCTTTGATGAAGCGGGACGACGAAAAATTGACCAAGGATGTGTTTAAGGAGCTAATGGAAAAGGATTTCTTGGATTTGAATGCTAATGCATTGTGTGTTGGGAAGAAATCGTCGTTTGCAGCTTTGGTGCTGCGAGAATTGGGACTCTTGAGTGCTGTTGGTGTTGATGCACACCCGTATTTCTCTCTTGTATGGAGAAGATTTATGTACGAGCTCGATCATGAGAACAATTCTTTCGATTTTGTGTTCTCGAGGGATCTGGATAAGGTCACTGTACCAGCTCTTATGGTGCTTGAGATTGAGCGTGTCTTACGTCCAGGGGGCACCGGTGTTATGCTCGTGGGTTCTAGTAGTTTCTACGCGGGTAACTTGGTAAAAGGCAACTTGATAAGGTCTGCCACCCCAGTTTCGTCGTTCTTGAAGAGTTCTGATGTTGTGCACGTATGTGGGGTTGGCACGTATACTCTAGTGATGTTCAAGAAAAGATCAGAGATTGTTCAATCTCTCGTGCACTCTGTGCTGCCTGCTAATTGTCCTTCCAATGTGAACAACAAGCCGTACTTGAAGCACCTTGAGCCACTCGTGGAAAAGAAGCTTGGACAGTTTGAGACACAAATCTCATACTTGCCCAAGTTCATGAACATCTCATCTAGGAACAAACTGGTGTATATCAACGTTGGTGCAGGGGAATTCGTAGAATCAACTCTTGCAAGAACATTCAAGCCTCATTATCCAATCCCTCACCACTTGTTCAATGTTTTCGTCATTGATCATAACACCTCCACACTGTCCTTATATGTGAAGAATCCTGGTATTAACTTTGTGTACCATCCAGGACTTGCTGTCGCCGGAGAGACTACTTTGTCATCTGTTGACACTGACGAATATTTGGGTGCACCACTAGATCATGAAGGATTCGACTTCATTCATTGGTTTAGTGAAACAGTTAAAGACGGAGACTATGTCATCCTCATGATGAATGCTAGAGCACCAGAGCTAAACATTCTAGCAGAACTATTCCAAACTGGATCAATATGCCACGTCGATGAGCTGTTCCTTCGCTGCTCCGCTGCAGATTGCAGAAATGCTCTTTGTGGAGACTGCATGAGCCTTTTCAAAACTCTAAGGAGAAGTGGTGTGTTTGCTCATCAATGGTGGGGAGACTAGAGTTTTGTCAAGAGTTTTAAGTGCATTTTATGTTGTCTTGTGTTCAACTTTTGCTTTAGTGTCTGTTGGGAATAAATTGAGGGGAGGTTGTAGGTTGAAAGTTGATACTGTAATCTTACTTTCTCCCTTCTGGAACTGCACTTGATGTCTTGTGTATGTGTCCATGTGTGTATGTGAGTTGCTTGTCTCTAAGTTTCTTTTTTGAGTTTATATAAAAATATGTGTTATGTGTTTTAAGAACTATGCTTTATTGTGATAATTAACAT</gDNA_template>
            <first_frame> V  *  L  *  K  G  S  C  L  L  L  L  *  F  L  C  H  L  F  K  *  H  I  *  F  R  N  L  N  L  *  C  *  I  L  V  Y  A  L  *  T  L  G  L  M  S  I  *  M  *  P  G  S  L  N  L  F  L  D  W  G  F  R  C  L  E  L  L  *  *  S  G  T  T  K  N  *  P  R  M  C  L  R  S  *  W  K  R  I  S  W  I  *  M  L  M  H  C  V  L  G  R  N  R  R  L  Q  L  W  C  C  E  N  W  D  S  *  V  L  L  V  L  M  H  T  R  I  S  L  L  Y  G  E  D  L  C  T  S  S  I  M  R  T  I  L  S  I  L  C  S  R  G  I  W  I  R  S  L  Y  Q  L  L  W  C  L  R  L  S  V  S  Y  V  Q  G  A  P  V  L  C  S  W  V  L  V  V  S  T  R  V  T  W  *  K  A  T  *  *  G  L  P  P  Q  F  R  R  S  *  R  V  L  M  L  C  T  Y  V  G  L  A  R  I  L  *  *  C  S  R  K  D  Q  R  L  F  N  L  S  C  T  L  C  C  L  L  I  V  L  P  M  *  T  T  S  R  T  *  S  T  L  S  H  S  W  K  R  S  L  D  S  L  R  H  K  S  H  T  C  P  S  S  *  T  S  H  L  G  T  N  W  C  I  S  T  L  V  Q  G  N  S  *  N  Q  L  L  Q  E  H  S  S  L  I  I  Q  S  L  T  T  C  S  M  F  S  S  L  I  I  T  P  P  H  C  P  Y  M  *  R  I  L  V  L  T  L  C  T  I  Q  D  L  L  S  P  E  R  L  L  C  H  L  L  T  L  T  N  I  W  V  H  H  *  I  M  K  D  S  T  S  F  I  G  L  V  K  Q  L  K  T  E  T  M  S  S  S  *  *  M  L  E  H  Q  S  *  T  F  *  Q  N  Y  S  K  L  D  Q  Y  A  T  S  M  S  C  S  F  A  A  P  L  Q  I  A  E  M  L  F  V  E  T  A  *  A  F  S  K  L  *  G  E  V  V  C  L  L  I  N  G  G  E  T  R  V  L  S  R  V  L  S  A  F  Y  V  V  L  C  S  T  F  A  L  V  S  V  G  N  K  L  R  G  G  C  R  L  K  V  D  T  V  I  L  L  S  P  F  W  N  C  T  *  C  L  V  Y  V  S  M  C  V  C  E  L  L  V  S  K  F  L  F  *  V  Y  I  K  I  C  V  M  C  F  K  N  Y  A  L  L  *  *  L  T  </first_frame>
            <second_frame>  F  D  C  E  R  V  L  V  C  Y  C  Y  D  S  C  V  I  C  S  N  D  T  Y  D  S  E  I  *  T  Y  N  V  E  F  W  C  M  P  F  E  L  W  V  *  *  V  Y  E  C  D  R  V  R  *  T  C  F  W  I  G  D  F  A  V  W  S  F  F  D  E  A  G  R  R  K  I  D  Q  G  C  V  *  G  A  N  G  K  G  F  L  G  F  E  C  *  C  I  V  C  W  E  E  I  V  V  C  S  F  G  A  A  R  I  G  T  L  E  C  C  W  C  *  C  T  P  V  F  L  S  C  M  E  K  I  Y  V  R  A  R  S  *  E  Q  F  F  R  F  C  V  L  E  G  S  G  *  G  H  C  T  S  S  Y  G  A  *  D  *  A  C  L  T  S  R  G  H  R  C  Y  A  R  G  F  *  *  F  L  R  G  *  L  G  K  R  Q  L  D  K  V  C  H  P  S  F  V  V  L  E  E  F  *  C  C  A  R  M  W  G  W  H  V  Y  S  S  D  V  Q  E  K  I  R  D  C  S  I  S  R  A  L  C  A  A  C  *  L  S  F  Q  C  E  Q  Q  A  V  L  E  A  P  *  A  T  R  G  K  E  A  W  T  V  *  D  T  N  L  I  L  A  Q  V  H  E  H  L  I  *  E  Q  T  G  V  Y  Q  R  W  C  R  G  I  R  R  I  N  S  C  K  N  I  Q  A  S  L  S  N  P  S  P  L  V  Q  C  F  R  H  *  S  *  H  L  H  T  V  L  I  C  E  E  S  W  Y  *  L  C  V  P  S  R  T  C  C  R  R  R  D  Y  F  V  I  C  *  H  *  R  I  F  G  C  T  T  R  S  *  R  I  R  L  H  S  L  V  *  *  N  S  *  R  R  R  L  C  H  P  H  D  E  C  *  S  T  R  A  K  H  S  S  R  T  I  P  N  W  I  N  M  P  R  R  *  A  V  P  S  L  L  R  C  R  L  Q  K  C  S  L  W  R  L  H  E  P  F  Q  N  S  K  E  K  W  C  V  C  S  S  M  V  G  R  L  E  F  C  Q  E  F  *  V  H  F  M  L  S  C  V  Q  L  L  L  *  C  L  L  G  I  N  *  G  E  V  V  G  *  K  L  I  L  *  S  Y  F  L  P  S  G  T  A  L  D  V  L  C  M  C  P  C  V  Y  V  S  C  L  S  L  S  F  F  F  E  F  I  *  K  Y  V  L  C  V  L  R  T  M  L  Y  C  D  N  *  H </second_frame>
            <third_frame>   L  I  V  K  G  F  L  F  V  T  V  M  I  L  V  S  F  V  Q  M  T  H  M  I  Q  K  S  E  P  I  M  L  N  F  G  V  C  P  L  N  F  G  S  N  E  Y  M  N  V  T  G  F  V  K  P  V  S  G  L  G  I  S  L  F  G  A  S  L  M  K  R  D  D  E  K  L  T  K  D  V  F  K  E  L  M  E  K  D  F  L  D  L  N  A  N  A  L  C  V  G  K  K  S  S  F  A  A  L  V  L  R  E  L  G  L  L  S  A  V  G  V  D  A  H  P  Y  F  S  L  V  W  R  R  F  M  Y  E  L  D  H  E  N  N  S  F  D  F  V  F  S  R  D  L  D  K  V  T  V  P  A  L  M  V  L  E  I  E  R  V  L  R  P  G  G  T  G  V  M  L  V  G  S  S  S  F  Y  A  G  N  L  V  K  G  N  L  I  R  S  A  T  P  V  S  S  F  L  K  S  S  D  V  V  H  V  C  G  V  G  T  Y  T  L  V  M  F  K  K  R  S  E  I  V  Q  S  L  V  H  S  V  L  P  A  N  C  P  S  N  V  N  N  K  P  Y  L  K  H  L  E  P  L  V  E  K  K  L  G  Q  F  E  T  Q  I  S  Y  L  P  K  F  M  N  I  S  S  R  N  K  L  V  Y  I  N  V  G  A  G  E  F  V  E  S  T  L  A  R  T  F  K  P  H  Y  P  I  P  H  H  L  F  N  V  F  V  I  D  H  N  T  S  T  L  S  L  Y  V  K  N  P  G  I  N  F  V  Y  H  P  G  L  A  V  A  G  E  T  T  L  S  S  V  D  T  D  E  Y  L  G  A  P  L  D  H  E  G  F  D  F  I  H  W  F  S  E  T  V  K  D  G  D  Y  V  I  L  M  M  N  A  R  A  P  E  L  N  I  L  A  E  L  F  Q  T  G  S  I  C  H  V  D  E  L  F  L  R  C  S  A  A  D  C  R  N  A  L  C  G  D  C  M  S  L  F  K  T  L  R  R  S  G  V  F  A  H  Q  W  W  G  D  *  S  F  V  K  S  F  K  C  I  L  C  C  L  V  F  N  F  C  F  S  V  C  W  E  *  I  E  G  R  L  *  V  E  S  *  Y  C  N  L  T  F  S  L  L  E  L  H  L  M  S  C  V  C  V  H  V  C  M  *  V  A  C  L  *  V  S  F  L  S  L  Y  K  N  M  C  Y  V  F  *  E  L  C  F  I  V  I  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75575" stop="74211"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIVKGFLFVTVMILVSFVQMTHMIQKSEPIMLNFGVCPLNFGSNEYMNVTGFVKPVSGLGISLFGASLMKRDDEKLTKDVFKELMEKDFLDLNANALCVGKKSSFAALVLRELGLLSAVGVDAHPYFSLVWRRFMYELDHENNSFDFVFSRDLDKVTVPALMVLEIERVLRPGGTGVMLVGSSSFYAGNLVKGNLIRSATPVSSFLKSSDVVHVCGVGTYTLVMFKKRSEIVQSLVHSVLPANCPSNVNNKPYLKHLEPLVEKKLGQFETQISYLPKFMNISSRNKLVYINVGAGEFVESTLARTFKPHYPIPHHLFNVFVIDHNTSTLSLYVKNPGINFVYHPGLAVAGETTLSSVDTDEYLGAPLDHEGFDFIHWFSETVKDGDYVILMMNARAPELNILAELFQTGSICHVDELFLRCSAADCRNALCGDCMSLFKTLRRSGVFAHQWWGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="73955" PGL_stop="75114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73955" e_stop="74659"/>
            <exon e_start="74734" e_stop="75114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="73955" e_stop="74659" e_length="705"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74660" i_stop="74733" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="74734" e_stop="75114" e_length="381"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73955" stop="74585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73966" stop="74659"/>
              <exon start="74734" stop="74787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73967" stop="74536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74271" stop="74659"/>
              <exon start="74734" stop="75114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425772" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74371" stop="74659"/>
              <exon start="74734" stop="75114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455333" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACAATAAAGCATAGTTCTTAAAACACATAACACATATTTTTATATAAACTCAAAAAAGAAACTTAGAGACAAGCAACTCACATACACACATGGACACATACACAAGACATCAAGTGCAGTTCCAGAAGGGAGAAAGTAAGATTACAGTATCAACTTTCAACCTACAACCTCCCCTCAATTTATTCCCAACAGACACTAAAGCAAAAGTTGAACACAAGACAACATAAAATGCACTTAAAACTCTTGACAAAACTCTAGTCTCCCCACCATTGATGAGCAAACACACCACTTCTCCTTAGAGTTTTGAAAAGGCTCATGCAGTCTCCACAAAGAGCATTTCTGCAATCTGCAGCGGAGCAGCGAAGGAACAGCTCATCGACGTGGCATATTGATCCAGTTTGGAATAGTTCTGCTAGAATGTTTAGCTCTGGTGCTCTAGCATTCATCATGAGGATGACATAGTCTCCGTCTTTAACTGTTTCACTAAACCAATGAATGAAGTCGAATCCTTCATGATCTAGTGGTGCACCCAAATATTCGTCAGTGTCAACAGATGACAAAGTAGTCTCTCCGGCGACAGCAAGTCCTGGATGGTACACAAAGTTAATACCAGGATTCTTCACATATAAGGACAGTGTGGAGGTGTTATGATCAATGACGAAAACATTGAACAAGTGGTGAGGGATTGGATAATGAGGCTTGA : ATGTTCATGAACTTGGGCAAGTATGAGATTTGTGTCTCAAACTGTCCAAGCTTCTTTTCCACGAGTGGCTCAAGGTGCTTCAAGTACGGCTTGTTGTTCACATTGGAAGGACAATTAGCAGGCAGCACAGAGTGCACGAGAGATTGAACAATCTCTGATCTTTTCTTGAACATCACTAGAGTATACGTGCCAACCCCACATACGTGCACAACATCAGAACTCTTCAAGAACGACGAAACTGGGGTGGCAGACCTTATCAAGTTGCCTTTTACCAAGTTACCCGCGTAGAAACTACTAGAACCCACGAGCATAACACCGGTGCCCCCTGGACGTAAGACACGCTCAATCTCAAGCACCATAAGAGCTGGTACAGTGACCTTA</gDNA_template>
            <first_frame> S  Q  *  S  I  V  L  K  T  H  N  T  Y  F  Y  I  N  S  K  K  K  L  R  D  K  Q  L  T  Y  T  H  G  H  I  H  K  T  S  S  A  V  P  E  G  R  K  *  D  Y  S  I  N  F  Q  P  T  T  S  P  Q  F  I  P  N  R  H  *  S  K  S  *  T  Q  D  N  I  K  C  T  *  N  S  *  Q  N  S  S  L  P  T  I  D  E  Q  T  H  H  F  S  L  E  F  *  K  G  S  C  S  L  H  K  E  H  F  C  N  L  Q  R  S  S  E  G  T  A  H  R  R  G  I  L  I  Q  F  G  I  V  L  L  E  C  L  A  L  V  L  *  H  S  S  *  G  *  H  S  L  R  L  *  L  F  H  *  T  N  E  *  S  R  I  L  H  D  L  V  V  H  P  N  I  R  Q  C  Q  Q  M  T  K  *  S  L  R  R  Q  Q  V  L  D  G  T  Q  S  *  Y  Q  D  S  S  H  I  R  T  V  W  R  C  Y  D  Q  *  R  K  H  *  T  S  G  E  G  L  D  N  E  A  *  :  M  F  M  N  L  G  K  Y  E  I  C  V  S  N  C  P  S  F  F  S  T  S  G  S  R  C  F  K  Y  G  L  L  F  T  L  E  G  Q  L  A  G  S  T  E  C  T  R  D  *  T  I  S  D  L  F  L  N  I  T  R  V  Y  V  P  T  P  H  T  C  T  T  S  E  L  F  K  N  D  E  T  G  V  A  D  L  I  K  L  P  F  T  K  L  P  A  *  K  L  L  E  P  T  S  I  T  P  V  P  P  G  R  K  T  R  S  I  S  S  T  I  R  A  G  T  V  T  L </first_frame>
            <second_frame>  H  N  K  A  *  F  L  K  H  I  T  H  I  F  I  *  T  Q  K  R  N  L  E  T  S  N  S  H  T  H  M  D  T  Y  T  R  H  Q  V  Q  F  Q  K  G  E  S  K  I  T  V  S  T  F  N  L  Q  P  P  L  N  L  F  P  T  D  T  K  A  K  V  E  H  K  T  T  *  N  A  L  K  T  L  D  K  T  L  V  S  P  P  L  M  S  K  H  T  T  S  P  *  S  F  E  K  A  H  A  V  S  T  K  S  I  S  A  I  C  S  G  A  A  K  E  Q  L  I  D  V  A  Y  *  S  S  L  E  *  F  C  *  N  V  *  L  W  C  S  S  I  H  H  E  D  D  I  V  S  V  F  N  C  F  T  K  P  M  N  E  V  E  S  F  M  I  *  W  C  T  Q  I  F  V  S  V  N  R  *  Q  S  S  L  S  G  D  S  K  S  W  M  V  H  K  V  N  T  R  I  L  H  I  *  G  Q  C  G  G  V  M  I  N  D  E  N  I  E  Q  V  V  R  D  W  I  M  R  L  E :   C  S  *  T  W  A  S  M  R  F  V  S  Q  T  V  Q  A  S  F  P  R  V  A  Q  G  A  S  S  T  A  C  C  S  H  W  K  D  N  *  Q  A  A  Q  S  A  R  E  I  E  Q  S  L  I  F  S  *  T  S  L  E  Y  T  C  Q  P  H  I  R  A  Q  H  Q  N  S  S  R  T  T  K  L  G  W  Q  T  L  S  S  C  L  L  P  S  Y  P  R  R  N  Y  *  N  P  R  A  *  H  R  C  P  L  D  V  R  H  A  Q  S  Q  A  P  *  E  L  V  Q  *  P   </second_frame>
            <third_frame>   T  I  K  H  S  S  *  N  T  *  H  I  F  L  Y  K  L  K  K  E  T  *  R  Q  A  T  H  I  H  T  W  T  H  T  Q  D  I  K  C  S  S  R  R  E  K  V  R  L  Q  Y  Q  L  S  T  Y  N  L  P  S  I  Y  S  Q  Q  T  L  K  Q  K  L  N  T  R  Q  H  K  M  H  L  K  L  L  T  K  L  *  S  P  H  H  *  *  A  N  T  P  L  L  L  R  V  L  K  R  L  M  Q  S  P  Q  R  A  F  L  Q  S  A  A  E  Q  R  R  N  S  S  S  T  W  H  I  D  P  V  W  N  S  S  A  R  M  F  S  S  G  A  L  A  F  I  M  R  M  T  *  S  P  S  L  T  V  S  L  N  Q  *  M  K  S  N  P  S  *  S  S  G  A  P  K  Y  S  S  V  S  T  D  D  K  V  V  S  P  A  T  A  S  P  G  W  Y  T  K  L  I  P  G  F  F  T  Y  K  D  S  V  E  V  L  *  S  M  T  K  T  L  N  K  W  *  G  I  G  *  *  G  L   : N  V  H  E  L  G  Q  V  *  D  L  C  L  K  L  S  K  L  L  F  H  E  W  L  K  V  L  Q  V  R  L  V  V  H  I  G  R  T  I  S  R  Q  H  R  V  H  E  R  L  N  N  L  *  S  F  L  E  H  H  *  S  I  R  A  N  P  T  Y  V  H  N  I  R  T  L  Q  E  R  R  N  W  G  G  R  P  Y  Q  V  A  F  Y  Q  V  T  R  V  E  T  T  R  T  H  E  H  N  T  G  A  P  W  T  *  D  T  L  N  L  K  H  H  K  S  W  Y  S  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="79551" PGL_stop="81955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79551" e_stop="79718"/>
            <exon e_start="81330" e_stop="81422"/>
            <exon e_start="81510" e_stop="81824"/>
            <exon e_start="81936" e_stop="81955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.972" e_score="0.994"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.838" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="79551" e_stop="79718" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.972">
            <gDNA_intron_boundary i_start="79719" i_stop="81329" i_length="1611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81330" e_stop="81422" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="81423" i_stop="81509" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="81510" e_stop="81824" e_length="315"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.838">
            <gDNA_intron_boundary i_start="81825" i_stop="81935" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81936" e_stop="81955" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79551" stop="79718"/>
              <exon start="81330" stop="81422"/>
              <exon start="81510" stop="81824"/>
              <exon start="81936" stop="81955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGACGGGGAGAAGGCAGAGGATAAAGAAGAGAAGTGCAATGACGTTATGATGACTGAGGCGTTAGACGATGACGAATGTTCTTCGGTTTCTGGGTTGTCAAAATGCTTGGTGAACCTTCCCATGAAGTGGAGTTCAGATAATTTAAGGTGTTTCCTCAAAGAACAT : GGTGTTACTTTTAAATCAGCAAAAAAGAAGAAAGGCATGGCTGTAGGATTTGCTACTTTTGAAAATGCAGAACAAGTGAAAACTGCTGTGAAG : GAATTGGATGGAAAGCCTGCTGGCAACAAGATTTTAAAGGTTGGAGATATTATTCCGCGGGCATTTGAGAGAAAAGGTAATTCGGCAATGTCCTCATTTCGCACCAATCAACAAGGTGAAAAGCAAACCGAAGCTGGAGACGGTTTGGATTTGACTAAAATATCAGAGGAAACTGAGGCTGAGGACCCAGTGACCAGTGATTCAGTTCTGAAGGGTAGGTGTGTTCGGGATGTGGTGACTCCTCTTGCTAAAATGCCATATGCTGATCAACTGGAGCAGAAGAAGAGCTCTTTGACGCGAACTCTTAAAACACTT : ACTCGAAATGCACGTAAAGC</gDNA_template>
            <first_frame> D  D  G  E  K  A  E  D  K  E  E  K  C  N  D  V  M  M  T  E  A  L  D  D  D  E  C  S  S  V  S  G  L  S  K  C  L  V  N  L  P  M  K  W  S  S  D  N  L  R  C  F  L  K  E  H  :  G  V  T  F  K  S  A  K  K  K  K  G  M  A  V  G  F  A  T  F  E  N  A  E  Q  V  K  T  A  V  K  :  E  L  D  G  K  P  A  G  N  K  I  L  K  V  G  D  I  I  P  R  A  F  E  R  K  G  N  S  A  M  S  S  F  R  T  N  Q  Q  G  E  K  Q  T  E  A  G  D  G  L  D  L  T  K  I  S  E  E  T  E  A  E  D  P  V  T  S  D  S  V  L  K  G  R  C  V  R  D  V  V  T  P  L  A  K  M  P  Y  A  D  Q  L  E  Q  K  K  S  S  L  T  R  T  L  K  T  L  :  T  R  N  A  R  K   </first_frame>
            <second_frame>  T  T  G  R  R  Q  R  I  K  K  R  S  A  M  T  L  *  *  L  R  R  *  T  M  T  N  V  L  R  F  L  G  C  Q  N  A  W  *  T  F  P  *  S  G  V  Q  I  I  *  G  V  S  S  K  N  M :   V  L  L  L  N  Q  Q  K  R  R  K  A  W  L  *  D  L  L  L  L  K  M  Q  N  K  *  K  L  L  *  R :   N  W  M  E  S  L  L  A  T  R  F  *  R  L  E  I  L  F  R  G  H  L  R  E  K  V  I  R  Q  C  P  H  F  A  P  I  N  K  V  K  S  K  P  K  L  E  T  V  W  I  *  L  K  Y  Q  R  K  L  R  L  R  T  Q  *  P  V  I  Q  F  *  R  V  G  V  F  G  M  W  *  L  L  L  L  K  C  H  M  L  I  N  W  S  R  R  R  A  L  *  R  E  L  L  K  H  L :   L  E  M  H  V  K  </second_frame>
            <third_frame>   R  R  G  E  G  R  G  *  R  R  E  V  Q  *  R  Y  D  D  *  G  V  R  R  *  R  M  F  F  G  F  W  V  V  K  M  L  G  E  P  S  H  E  V  E  F  R  *  F  K  V  F  P  Q  R  T   : W  C  Y  F  *  I  S  K  K  E  E  R  H  G  C  R  I  C  Y  F  *  K  C  R  T  S  E  N  C  C  E   : G  I  G  W  K  A  C  W  Q  Q  D  F  K  G  W  R  Y  Y  S  A  G  I  *  E  K  R  *  F  G  N  V  L  I  S  H  Q  S  T  R  *  K  A  N  R  S  W  R  R  F  G  F  D  *  N  I  R  G  N  *  G  *  G  P  S  D  Q  *  F  S  S  E  G  *  V  C  S  G  C  G  D  S  S  C  *  N  A  I  C  *  S  T  G  A  E  E  E  L  F  D  A  N  S  *  N  T   : Y  S  K  C  T  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79551" stop="79718"/>
                    <exon start="81330" stop="81422"/>
                    <exon start="81510" stop="81824"/>
                    <exon start="81936" stop="81953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDGEKAEDKEEKCNDVMMTEALDDDECSSVSGLSKCLVNLPMKWSSDNLRCFLKEHGVTFKSAKKKKGMAVGFATFENAEQVKTAVKELDGKPAGNKILKVGDIIPRAFERKGNSAMSSFRTNQQGEKQTEAGDGLDLTKISEETEAEDPVTSDSVLKGRCVRDVVTPLAKMPYADQLEQKKSSLTRTLKTLTRNARK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="84899" PGL_stop="90567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84899" e_stop="84998"/>
            <exon e_start="85359" e_stop="85532"/>
            <exon e_start="85644" e_stop="85778"/>
            <exon e_start="86875" e_stop="86970"/>
            <exon e_start="88784" e_stop="89218"/>
            <exon e_start="89823" e_stop="89866"/>
            <exon e_start="89981" e_stop="90567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.900"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="0.948"/>
          <exon-intron don_prob="0.997" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.752" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.273" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="84899" e_stop="84998" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84999" i_stop="85358" i_length="360"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="85359" e_stop="85532" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="85533" i_stop="85643" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85644" e_stop="85778" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.891">
            <gDNA_intron_boundary i_start="85779" i_stop="86874" i_length="1096"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86875" e_stop="86970" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.752" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86971" i_stop="88783" i_length="1813"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="88784" e_stop="89218" e_length="435"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="89219" i_stop="89822" i_length="604"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89823" e_stop="89866" e_length="44"/>
          </exon>
          <intron i_serial="6" don_prob="0.273" acc_prob="0.980">
            <gDNA_intron_boundary i_start="89867" i_stop="89980" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="89981" e_stop="90567" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84899" stop="84998"/>
              <exon start="85359" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="88836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85419" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="89050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85431" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="88952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85433" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85524" stop="85532"/>
              <exon start="85644" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="89174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85725" stop="85778"/>
              <exon start="86875" stop="86970"/>
              <exon start="88784" stop="89218"/>
              <exon start="89823" stop="89866"/>
              <exon start="89981" stop="90095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89151" stop="89218"/>
              <exon start="89823" stop="89866"/>
              <exon start="89981" stop="90486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89823" stop="89866"/>
              <exon start="89981" stop="90567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256140" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCATTAGTCAATGATGAACTTCAAGGTTTGGCCAAAGCATTTGCTATGGGAGCTTCTAGTGCATCACCAACATTACCTCTTACTGCCCTGGTAGTTCAG : GATCACACTGGAATATCAAATGTAGCACCAGCAGATGCTCCTCTGCGTGTACTTCCATTTTCCAGAGAGGAAAGCTATTCTGAACTGCATGCAGATAATGCAGTTGCTGAAGCAAAAATTCACGATTTTATTAATGGACTTAAGTTTTGTATTTCGCCGACGGCCTTCTTTCAG : GTGAACACCCTTGCTGCAGAGAAGTTATACTCTCTTGCAGGGGACTGGGCCAGCTTGGGTCCTGATACCTTACTTTTTGACGTTTGCTGTGGAACTGGAACAATTGGTCTTACTCTGGCAAATCGAGTTGGTATG : GTTGTTGGCATTGAAATGAATGCTTCTGCTGTTTCTGATGCTCAAAGAAATGCTGAAATCAATGGGATAAAGAACTGTAGATTTATTTGTGGAAAG : GCAGAGGATGTCATGGGATCTGTACTGAAAGAATATCTTGCTTCACCTGCGAAAGTAGATGGACTTCTAGATATAGAAGAAAAGAAAAACCAAGAAAATACTACTTCTACAGAGAAGACTGATTCTATAGTTAACGCATCGAAAACAGATGGGGAGTCAAGTACTGGGTCTGAAAATGGTAAAAGCATGTGCATTGATCAAGATACTACACCTACTGAGAATATGTATTCTACGGATAGAGCCGCTGAACCGGAGGAAAAAACAGGCCTTGAGTGTACCAATGGTAAAAGCTTGTCAGAATCTTCAGCAGATGACACTACAGAACCAGCAACCCAACTTAAGAAGTGTTCATCAGATAATTTGACCACTCCAGTGCAACATTTCAAGAATGTTGTTGCAATTGTAGATCCTCCACGTGCTGGACTTCATCCCACT : GTTATCAAACTTTTAAGGACTAACTCACGTCTAAGGAGGCTTGT : TTACATTTCCTGTAATCCTGAAAGCTTGGTTGCAAACGCTATTGAGCTCTGCACACCTTCTCCAGACGAATCGGAAAAGGGGGATAATAGGAACAACAGATTATGGAGGAAGATGAGCAGCGCTACTCTTGCACGACATAGGACCAAATCTATGCCCAATTCAGAGCCTTTTAAACCTGTCAAAGCCATGGCTGTTGATCTTTTTCCACATTCTCCTCATTGTGAACTGGTGATGCTTTTGGAGAGGTAAATTTATCTGTTTCCTTAAGTGATAATCTTGAGTAGCCATATTTATGTGAGGAAATAGAAATGTTCCTTTATATTTGTTCTCTCAATGTGGAAAACAAGGGATGTGCTTTCGACAAACAGTTACTAGATATCTGTTACTGATGGCAGTTTTGAGGCAATCTTTTACTCGTGGAAGATTTCCATAATATTGTTTTGTAACTTTTTCCTTATTTTATTACCAACTTCCAGTTCCCTGATTCCCTGTTCGAAAAGAATACCTCTAATATTAATGACAGATTATGTTTATGACCTCTCATCTAATTTAAGATGCTGTAACAATTTCAAGTGAAAAGTATTCT</gDNA_template>
            <first_frame> C  I  S  Q  *  *  T  S  R  F  G  Q  S  I  C  Y  G  S  F  *  C  I  T  N  I  T  S  Y  C  P  G  S  S   : G  S  H  W  N  I  K  C  S  T  S  R  C  S  S  A  C  T  S  I  F  Q  R  G  K  L  F  *  T  A  C  R  *  C  S  C  *  S  K  N  S  R  F  Y  *  W  T  *  V  L  Y  F  A  D  G  L  L  S   : G  E  H  P  C  C  R  E  V  I  L  S  C  R  G  L  G  Q  L  G  S  *  Y  L  T  F  *  R  L  L  W  N  W  N  N  W  S  Y  S  G  K  S  S  W  Y   : G  C  W  H  *  N  E  C  F  C  C  F  *  C  S  K  K  C  *  N  Q  W  D  K  E  L  *  I  Y  L  W  K   : G  R  G  C  H  G  I  C  T  E  R  I  S  C  F  T  C  E  S  R  W  T  S  R  Y  R  R  K  E  K  P  R  K  Y  Y  F  Y  R  E  D  *  F  Y  S  *  R  I  E  N  R  W  G  V  K  Y  W  V  *  K  W  *  K  H  V  H  *  S  R  Y  Y  T  Y  *  E  Y  V  F  Y  G  *  S  R  *  T  G  G  K  N  R  P  *  V  Y  Q  W  *  K  L  V  R  I  F  S  R  *  H  Y  R  T  S  N  P  T  *  E  V  F  I  R  *  F  D  H  S  S  A  T  F  Q  E  C  C  C  N  C  R  S  S  T  C  W  T  S  S  H   : C  Y  Q  T  F  K  D  *  L  T  S  K  E  A  C  :  L  H  F  L  *  S  *  K  L  G  C  K  R  Y  *  A  L  H  T  F  S  R  R  I  G  K  G  G  *  *  E  Q  Q  I  M  E  E  D  E  Q  R  Y  S  C  T  T  *  D  Q  I  Y  A  Q  F  R  A  F  *  T  C  Q  S  H  G  C  *  S  F  S  T  F  S  S  L  *  T  G  D  A  F  G  E  V  N  L  S  V  S  L  S  D  N  L  E  *  P  Y  L  C  E  E  I  E  M  F  L  Y  I  C  S  L  N  V  E  N  K  G  C  A  F  D  K  Q  L  L  D  I  C  Y  *  W  Q  F  *  G  N  L  L  L  V  E  D  F  H  N  I  V  L  *  L  F  P  Y  F  I  T  N  F  Q  F  P  D  S  L  F  E  K  N  T  S  N  I  N  D  R  L  C  L  *  P  L  I  *  F  K  M  L  *  Q  F  Q  V  K  S  I   </first_frame>
            <second_frame>  A  L  V  N  D  E  L  Q  G  L  A  K  A  F  A  M  G  A  S  S  A  S  P  T  L  P  L  T  A  L  V  V  Q  :  D  H  T  G  I  S  N  V  A  P  A  D  A  P  L  R  V  L  P  F  S  R  E  E  S  Y  S  E  L  H  A  D  N  A  V  A  E  A  K  I  H  D  F  I  N  G  L  K  F  C  I  S  P  T  A  F  F  Q  :  V  N  T  L  A  A  E  K  L  Y  S  L  A  G  D  W  A  S  L  G  P  D  T  L  L  F  D  V  C  C  G  T  G  T  I  G  L  T  L  A  N  R  V  G  M  :  V  V  G  I  E  M  N  A  S  A  V  S  D  A  Q  R  N  A  E  I  N  G  I  K  N  C  R  F  I  C  G  K  :  A  E  D  V  M  G  S  V  L  K  E  Y  L  A  S  P  A  K  V  D  G  L  L  D  I  E  E  K  K  N  Q  E  N  T  T  S  T  E  K  T  D  S  I  V  N  A  S  K  T  D  G  E  S  S  T  G  S  E  N  G  K  S  M  C  I  D  Q  D  T  T  P  T  E  N  M  Y  S  T  D  R  A  A  E  P  E  E  K  T  G  L  E  C  T  N  G  K  S  L  S  E  S  S  A  D  D  T  T  E  P  A  T  Q  L  K  K  C  S  S  D  N  L  T  T  P  V  Q  H  F  K  N  V  V  A  I  V  D  P  P  R  A  G  L  H  P  T  :  V  I  K  L  L  R  T  N  S  R  L  R  R  L  V :   Y  I  S  C  N  P  E  S  L  V  A  N  A  I  E  L  C  T  P  S  P  D  E  S  E  K  G  D  N  R  N  N  R  L  W  R  K  M  S  S  A  T  L  A  R  H  R  T  K  S  M  P  N  S  E  P  F  K  P  V  K  A  M  A  V  D  L  F  P  H  S  P  H  C  E  L  V  M  L  L  E  R  *  I  Y  L  F  P  *  V  I  I  L  S  S  H  I  Y  V  R  K  *  K  C  S  F  I  F  V  L  S  M  W  K  T  R  D  V  L  S  T  N  S  Y  *  I  S  V  T  D  G  S  F  E  A  I  F  Y  S  W  K  I  S  I  I  L  F  C  N  F  F  L  I  L  L  P  T  S  S  S  L  I  P  C  S  K  R  I  P  L  I  L  M  T  D  Y  V  Y  D  L  S  S  N  L  R  C  C  N  N  F  K  *  K  V  F  </second_frame>
            <third_frame>   H  *  S  M  M  N  F  K  V  W  P  K  H  L  L  W  E  L  L  V  H  H  Q  H  Y  L  L  L  P  W  *  F  R :   I  T  L  E  Y  Q  M  *  H  Q  Q  M  L  L  C  V  Y  F  H  F  P  E  R  K  A  I  L  N  C  M  Q  I  M  Q  L  L  K  Q  K  F  T  I  L  L  M  D  L  S  F  V  F  R  R  R  P  S  F  R :   *  T  P  L  L  Q  R  S  Y  T  L  L  Q  G  T  G  P  A  W  V  L  I  P  Y  F  L  T  F  A  V  E  L  E  Q  L  V  L  L  W  Q  I  E  L  V  W :   L  L  A  L  K  *  M  L  L  L  F  L  M  L  K  E  M  L  K  S  M  G  *  R  T  V  D  L  F  V  E  R :   Q  R  M  S  W  D  L  Y  *  K  N  I  L  L  H  L  R  K  *  M  D  F  *  I  *  K  K  R  K  T  K  K  I  L  L  L  Q  R  R  L  I  L  *  L  T  H  R  K  Q  M  G  S  Q  V  L  G  L  K  M  V  K  A  C  A  L  I  K  I  L  H  L  L  R  I  C  I  L  R  I  E  P  L  N  R  R  K  K  Q  A  L  S  V  P  M  V  K  A  C  Q  N  L  Q  Q  M  T  L  Q  N  Q  Q  P  N  L  R  S  V  H  Q  I  I  *  P  L  Q  C  N  I  S  R  M  L  L  Q  L  *  I  L  H  V  L  D  F  I  P  L :   L  S  N  F  *  G  L  T  H  V  *  G  G  L   : F  T  F  P  V  I  L  K  A  W  L  Q  T  L  L  S  S  A  H  L  L  Q  T  N  R  K  R  G  I  I  G  T  T  D  Y  G  G  R  *  A  A  L  L  L  H  D  I  G  P  N  L  C  P  I  Q  S  L  L  N  L  S  K  P  W  L  L  I  F  F  H  I  L  L  I  V  N  W  *  C  F  W  R  G  K  F  I  C  F  L  K  *  *  S  *  V  A  I  F  M  *  G  N  R  N  V  P  L  Y  L  F  S  Q  C  G  K  Q  G  M  C  F  R  Q  T  V  T  R  Y  L  L  L  M  A  V  L  R  Q  S  F  T  R  G  R  F  P  *  Y  C  F  V  T  F  S  L  F  Y  Y  Q  L  P  V  P  *  F  P  V  R  K  E  Y  L  *  Y  *  *  Q  I  M  F  M  T  S  H  L  I  *  D  A  V  T  I  S  S  E  K  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84900" stop="84998"/>
                    <exon start="85359" stop="85532"/>
                    <exon start="85644" stop="85778"/>
                    <exon start="86875" stop="86970"/>
                    <exon start="88784" stop="89218"/>
                    <exon start="89823" stop="89866"/>
                    <exon start="89981" stop="90230"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1230</number_coding_nucleotides>
                  <number_encoded_amino_acids>410</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALVNDELQGLAKAFAMGASSASPTLPLTALVVQDHTGISNVAPADAPLRVLPFSREESYSELHADNAVAEAKIHDFINGLKFCISPTAFFQVNTLAAEKLYSLAGDWASLGPDTLLFDVCCGTGTIGLTLANRVGMVVGIEMNASAVSDAQRNAEINGIKNCRFICGKAEDVMGSVLKEYLASPAKVDGLLDIEEKKNQENTTSTEKTDSIVNASKTDGESSTGSENGKSMCIDQDTTPTENMYSTDRAAEPEEKTGLECTNGKSLSESSADDTTEPATQLKKCSSDNLTTPVQHFKNVVAIVDPPRAGLHPTVIKLLRTNSRLRRLVYISCNPESLVANAIELCTPSPDESEKGDNRNNRLWRKMSSATLARHRTKSMPNSEPFKPVKAMAVDLFPHSPHCELVMLLER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90357" stop="90557"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISVTDGSFEAIFYSWKISIILFCNFFLILLPTSSSLIPCSKRIPLILMTDYVYDLSSNLRCCNNFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="97725" PGL_stop="99348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97725" e_stop="97998"/>
            <exon e_start="98896" e_stop="99348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="97725" e_stop="97998" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="97999" i_stop="98895" i_length="897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98896" e_stop="99348" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97725" stop="97998"/>
              <exon start="98896" stop="99180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97744" stop="97998"/>
              <exon start="98896" stop="99348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97903" stop="97998"/>
              <exon start="98896" stop="99338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTATACAAAGTAACAAACATTCTGGTTCTCTATTTTTTTTTTTAAAAAAAAACTCCCATTGCACCTTTTTTTTTTAAAAAAAATCTTTTGTTATTTTCACTCTTTTCAAGATTTTTTCAAATTTTAAGTAAACAAAGTGTATTATTAGTAGATTGTGGAATATTTGGATCATGAGTGAAGAACATAAGGAGAAAATCATGGCTGAGGTTGTTGATAATGATGAAAAAATTGGTGTTTGTGAAAATGATTTTGTCATTTCAACACCTAAG : ATCGAGAGGTCATCCACGATTACTGAAGAAACAACACATGCTAAACATTGGAGGAAACCAAACCTATCCTTAGACATACCTTCAAGAACGTTAGACGCGTCTCCTCAAGAGTTAGTTCAGATTAAAAGACCATTCACGCCTACACCGAAGAGGGTGAATTTCCTTTTGACACCCAGTACTTGTGATTCAAGAATAACTACTTCATCACCAGGTCCCTCCCCGTGTCGTGGAAAATCAACCATTAGAAATCTTTTCCCTAAACTGAGCTTGAAATCACGTATGAATTCGGATACAGAGAAGGTAACTGTCCCGGATACAGGTCCAGCTGCTGCAGTTGTGCCACAACAAGAGAAGGTATCCATTTCAAGGTCATGGTCACTTACTAAAATGTTCACGCCTCGCATCAAGAGGACCTCGTCTTTGCCCGTTACACCAATTTCACATTCAAATCCT</gDNA_template>
            <first_frame> F  Y  Y  T  K  *  Q  T  F  W  F  S  I  F  F  F  K  K  K  L  P  L  H  L  F  F  L  K  K  I  F  C  Y  F  H  S  F  Q  D  F  F  K  F  *  V  N  K  V  Y  Y  *  *  I  V  E  Y  L  D  H  E  *  R  T  *  G  E  N  H  G  *  G  C  *  *  *  *  K  N  W  C  L  *  K  *  F  C  H  F  N  T  *   : D  R  E  V  I  H  D  Y  *  R  N  N  T  C  *  T  L  E  E  T  K  P  I  L  R  H  T  F  K  N  V  R  R  V  S  S  R  V  S  S  D  *  K  T  I  H  A  Y  T  E  E  G  E  F  P  F  D  T  Q  Y  L  *  F  K  N  N  Y  F  I  T  R  S  L  P  V  S  W  K  I  N  H  *  K  S  F  P  *  T  E  L  E  I  T  Y  E  F  G  Y  R  E  G  N  C  P  G  Y  R  S  S  C  C  S  C  A  T  T  R  E  G  I  H  F  K  V  M  V  T  Y  *  N  V  H  A  S  H  Q  E  D  L  V  F  A  R  Y  T  N  F  T  F  K  S  </first_frame>
            <second_frame>  F  I  I  Q  S  N  K  H  S  G  S  L  F  F  F  L  K  K  N  S  H  C  T  F  F  F  *  K  K  S  F  V  I  F  T  L  F  K  I  F  S  N  F  K  *  T  K  C  I  I  S  R  L  W  N  I  W  I  M  S  E  E  H  K  E  K  I  M  A  E  V  V  D  N  D  E  K  I  G  V  C  E  N  D  F  V  I  S  T  P  K  :  I  E  R  S  S  T  I  T  E  E  T  T  H  A  K  H  W  R  K  P  N  L  S  L  D  I  P  S  R  T  L  D  A  S  P  Q  E  L  V  Q  I  K  R  P  F  T  P  T  P  K  R  V  N  F  L  L  T  P  S  T  C  D  S  R  I  T  T  S  S  P  G  P  S  P  C  R  G  K  S  T  I  R  N  L  F  P  K  L  S  L  K  S  R  M  N  S  D  T  E  K  V  T  V  P  D  T  G  P  A  A  A  V  V  P  Q  Q  E  K  V  S  I  S  R  S  W  S  L  T  K  M  F  T  P  R  I  K  R  T  S  S  L  P  V  T  P  I  S  H  S  N  P </second_frame>
            <third_frame>   L  L  Y  K  V  T  N  I  L  V  L  Y  F  F  F  *  K  K  T  P  I  A  P  F  F  F  K  K  N  L  L  L  F  S  L  F  S  R  F  F  Q  I  L  S  K  Q  S  V  L  L  V  D  C  G  I  F  G  S  *  V  K  N  I  R  R  K  S  W  L  R  L  L  I  M  M  K  K  L  V  F  V  K  M  I  L  S  F  Q  H  L  R :   S  R  G  H  P  R  L  L  K  K  Q  H  M  L  N  I  G  G  N  Q  T  Y  P  *  T  Y  L  Q  E  R  *  T  R  L  L  K  S  *  F  R  L  K  D  H  S  R  L  H  R  R  G  *  I  S  F  *  H  P  V  L  V  I  Q  E  *  L  L  H  H  Q  V  P  P  R  V  V  E  N  Q  P  L  E  I  F  S  L  N  *  A  *  N  H  V  *  I  R  I  Q  R  R  *  L  S  R  I  Q  V  Q  L  L  Q  L  C  H  N  K  R  R  Y  P  F  Q  G  H  G  H  L  L  K  C  S  R  L  A  S  R  G  P  R  L  C  P  L  H  Q  F  H  I  Q  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97861" stop="97998"/>
                    <exon start="98896" stop="99348"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKCIISRLWNIWIMSEEHKEKIMAEVVDNDEKIGVCENDFVISTPKIERSSTITEETTHAKHWRKPNLSLDIPSRTLDASPQELVQIKRPFTPTPKRVNFLLTPSTCDSRITTSSPGPSPCRGKSTIRNLFPKLSLKSRMNSDTEKVTVPDTGPAAAVVPQQEKVSISRSWSLTKMFTPRIKRTSSLPVTPISHSNP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="101692" PGL_stop="102585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101692" e_stop="102112"/>
            <exon e_start="102567" e_stop="102585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101692" e_stop="102112" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="102113" i_stop="102566" i_length="454"/>
          </intron>
          <exon e_serial="2" e_score="0.842">
            <gDNA_exon_boundary e_start="102567" e_stop="102585" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101692" stop="102112"/>
              <exon start="102567" stop="102585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCTCGTATAGGTCCTCAAAATCATCAACACGATATAGAAAATCCTGAGACGTTTAGTTGGAGCTAGATTGTGTCTTATGTTACTGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAA : GTAAAAAAAGAAAAACAAA</gDNA_template>
            <first_frame> R  L  V  *  V  L  K  I  I  N  T  I  *  K  I  L  R  R  L  V  G  A  R  L  C  L  M  L  L  L  Q  P  K  K  E  L  S  D  L  F  I  Q  S  C  G  D  *  C  L  V  Q  V  R  N  L  L  C  S  T  L  S  C  A  D  S  S  L  S  M  P  H  T  R  V  G  F  S  K  N  T  L  F  F  G  V  S  D  A  H  Q  *  T  F  L  K  S  P  T  N  I  G  S  T  I  R  K  T  E  I  V  A  V  V  V  C  I  A  E  R  I  C  K  K  *  N  A  Y  I  S  R  R  E  Y  T  K  V  F  Y  E  K   : S  K  K  R  K  T   </first_frame>
            <second_frame>  V  S  Y  R  S  S  K  S  S  T  R  Y  R  K  S  *  D  V  *  L  E  L  D  C  V  L  C  Y  C  Y  S  Q  K  K  S  *  V  I  C  S  Y  R  V  V  E  I  D  V  *  Y  K  L  E  T  Y  C  V  L  L  *  V  V  R  T  L  H  F  P  C  H  T  P  V  L  D  S  P  K  I  H  Y  F  L  E  Y  L  T  R  I  N  R  H  F  *  R  V  R  P  T  *  V  L  L  Y  E  K  Q  K  *  L  L  L  L  F  V  L  L  K  E  Y  V  K  S  E  M  H  I  *  V  E  E  S  I  Q  R  C  F  M  K  K  :  V  K  K  E  K  Q  </second_frame>
            <third_frame>   S  R  I  G  P  Q  N  H  Q  H  D  I  E  N  P  E  T  F  S  W  S  *  I  V  S  Y  V  T  V  T  A  K  K  R  V  E  *  F  V  H  T  E  L  W  R  L  M  F  S  T  S  *  K  L  I  V  F  Y  S  K  L  C  G  L  F  T  F  H  A  T  H  P  C  W  I  L  Q  K  Y  T  I  F  W  S  I  *  R  A  S  I  D  I  F  E  E  S  D  Q  H  R  F  Y  Y  T  K  N  R  N  S  C  C  C  C  L  Y  C  *  K  N  M  *  K  V  K  C  I  Y  K  *  K  R  V  Y  K  G  V  L  *  K  K :   *  K  K  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101777" e_stop="102115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="101777" e_stop="102115" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101777" stop="102115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTACAGCCAAAAAAAGAGTTGAGTGATTTGTTCATACAGAGTTGTGGAGATTGATGTTTAGTACAAGTTAGAAACTTATTGTGTTCTACTCTAAGTTGTGCGGACTCTTCACTTTCCATGCCACACACCCGTGTTGGATTCTCCAAAAATACACTATTTTTTGGAGTATCTGACGCGCATCAATAGACATTTTTGAAGAGTCCGACCAACATAGGTTCTACTATACGAAAAACAGAAATAGTTGCTGTTGTTGTTTGTATTGCTGAAAGAATATGTAAAAAGTGAAATGCATATATAAGTAGAAGAGAGTATACAAAGGTGTTTTATGAAAAAATTA</gDNA_template>
            <first_frame> C  Y  S  Q  K  K  S  *  V  I  C  S  Y  R  V  V  E  I  D  V  *  Y  K  L  E  T  Y  C  V  L  L  *  V  V  R  T  L  H  F  P  C  H  T  P  V  L  D  S  P  K  I  H  Y  F  L  E  Y  L  T  R  I  N  R  H  F  *  R  V  R  P  T  *  V  L  L  Y  E  K  Q  K  *  L  L  L  L  F  V  L  L  K  E  Y  V  K  S  E  M  H  I  *  V  E  E  S  I  Q  R  C  F  M  K  K  L </first_frame>
            <second_frame>  V  T  A  K  K  R  V  E  *  F  V  H  T  E  L  W  R  L  M  F  S  T  S  *  K  L  I  V  F  Y  S  K  L  C  G  L  F  T  F  H  A  T  H  P  C  W  I  L  Q  K  Y  T  I  F  W  S  I  *  R  A  S  I  D  I  F  E  E  S  D  Q  H  R  F  Y  Y  T  K  N  R  N  S  C  C  C  C  L  Y  C  *  K  N  M  *  K  V  K  C  I  Y  K  *  K  R  V  Y  K  G  V  L  *  K  N   </second_frame>
            <third_frame>   L  Q  P  K  K  E  L  S  D  L  F  I  Q  S  C  G  D  *  C  L  V  Q  V  R  N  L  L  C  S  T  L  S  C  A  D  S  S  L  S  M  P  H  T  R  V  G  F  S  K  N  T  L  F  F  G  V  S  D  A  H  Q  *  T  F  L  K  S  P  T  N  I  G  S  T  I  R  K  T  E  I  V  A  V  V  V  C  I  A  E  R  I  C  K  K  *  N  A  Y  I  S  R  R  E  Y  T  K  V  F  Y  E  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0161D01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="102930" PGL_stop="107715"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103035" e_stop="103195"/>
            <exon e_start="103808" e_stop="104045"/>
            <exon e_start="105849" e_stop="106024"/>
            <exon e_start="106266" e_stop="106557"/>
            <exon e_start="107255" e_stop="107715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="0.919"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.992"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="103035" e_stop="103195" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="103808" e_stop="104045" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105849" e_stop="106024" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106266" e_stop="106557" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="107255" e_stop="107715" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103035" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="105934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103068" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103090" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103119" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103152" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105872" stop="106024"/>
              <exon start="106266" stop="106546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105982" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106287" stop="106557"/>
              <exon start="107255" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106300" stop="106557"/>
              <exon start="107255" stop="107629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106538" stop="106557"/>
              <exon start="107255" stop="107705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAACTACACTTTCTTGAGATATATATAAAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> V  N  Y  T  F  L  R  Y  I  *  K  K  T  E  Q  S  C  S  R  A  A  *  *  I  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  F  C  *  G  S  E  S  Y  L  *  D  Q  R  T  *  A  Y  K  S  S  G  Y  L  C  W  R  C  S  *  H  K  T  L  C  C  D  R  S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </first_frame>
            <second_frame>  *  T  T  L  S  *  D  I  Y  K  K  K  Q  S  K  V  A  A  G  Q  L  D  E  L  Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  C :   S  A  E  A  V  N  R  I  Y  E  I  K  G  R  K  H  T  S  P  L  A  I  C  V  G  D  V  H  D  I  K  H  Y  A  V  T  D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </second_frame>
            <third_frame>   K  L  H  F  L  E  I  Y  I  K  K  N  R  A  K  L  Q  Q  G  S  L  M  N  C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : V  L  L  R  Q  *  I  V  F  M  R  S  K  D  V  S  I  Q  V  L  W  L  F  V  L  A  M  F  M  T  *  N  I  M  L  *  Q  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103054" stop="103195"/>
                    <exon start="103808" stop="104045"/>
                    <exon start="105849" stop="106024"/>
                    <exon start="106266" stop="106557"/>
                    <exon start="107255" stop="107321"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIYKKKQSKVAAGQLDELQQTHKNSPNSAYFQLFHIPFSRCCFIFTHRVEKIGFLNLWARSRKGLSAVSVKKMGWSLENPDGDVETKKATVSPAAEDYGQEAIEAIRAGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRKHTSPLAICVGDVHDIKHYAVTDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102930" e_stop="103172"/>
            <exon e_start="103808" e_stop="104045"/>
            <exon e_start="105849" e_stop="106024"/>
            <exon e_start="106266" e_stop="106557"/>
            <exon e_start="107255" e_stop="107715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="0.909"/>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="102930" e_stop="103172" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103173" i_stop="103807" i_length="635"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104045" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="104046" i_stop="105848" i_length="1803"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105849" e_stop="106024" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106266" e_stop="106557" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="107255" e_stop="107715" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102930" stop="103172"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="105973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103088" stop="103172"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103101" stop="103172"/>
              <exon start="103808" stop="104045"/>
              <exon start="105849" stop="106024"/>
              <exon start="106266" stop="106549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105872" stop="106024"/>
              <exon start="106266" stop="106546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105982" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106287" stop="106557"/>
              <exon start="107255" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106300" stop="106557"/>
              <exon start="107255" stop="107629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106538" stop="106557"/>
              <exon start="107255" stop="107705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATTTTGGGTATACCAATTTAGACCTCATGACATGTTAAGGTTGATAAAATGTGTGTAGCAATTGGCGGCTGAACCTCCAAAGAAATAGGGCTTACATAGTCTGTAAACTACACTTTCTTGAGATATATATAAAAAAAAACAGAGCAAAGTTGCAGCAGGGCAGCTTGATGAATTGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAG : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : TTCTGCTGAGGCAGTGAATCGTATTTATGAGATCAAAGGACGTAAGCATACAAGTCCTCTGGCTATTTGTGTTGGCGATGTTCATGACATAAAACATTATGCTGTGACAGATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> K  I  L  G  I  P  I  *  T  S  *  H  V  K  V  D  K  M  C  V  A  I  G  G  *  T  S  K  E  I  G  L  T  *  S  V  N  Y  T  F  L  R  Y  I  *  K  K  T  E  Q  S  C  S  R  A  A  *  *  I  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : V  L  L  R  Q  *  I  V  F  M  R  S  K  D  V  S  I  Q  V  L  W  L  F  V  L  A  M  F  M  T  *  N  I  M  L  *  Q  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </first_frame>
            <second_frame>  R  F  W  V  Y  Q  F  R  P  H  D  M  L  R  L  I  K  C  V  *  Q  L  A  A  E  P  P  K  K  *  G  L  H  S  L  *  T  T  L  S  *  D  I  Y  K  K  K  Q  S  K  V  A  A  G  Q  L  D  E  L  Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  F  C  *  G  S  E  S  Y  L  *  D  Q  R  T  *  A  Y  K  S  S  G  Y  L  C  W  R  C  S  *  H  K  T  L  C  C  D  R  S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </second_frame>
            <third_frame>   D  F  G  Y  T  N  L  D  L  M  T  C  *  G  *  *  N  V  C  S  N  W  R  L  N  L  Q  R  N  R  A  Y  I  V  C  K  L  H  F  L  E  I  Y  I  K  K  N  R  A  K  L  Q  Q  G  S  L  M  N  C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R   : G  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  C :   S  A  E  A  V  N  R  I  Y  E  I  K  G  R  K  H  T  S  P  L  A  I  C  V  G  D  V  H  D  I  K  H  Y  A  V  T  D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102980" stop="103172"/>
                    <exon start="103808" stop="104045"/>
                    <exon start="105849" stop="106024"/>
                    <exon start="106266" stop="106557"/>
                    <exon start="107255" stop="107321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVCSNWRLNLQRNRAYIVCKLHFLEIYIKKNRAKLQQGSLMNCSRPTKIAQILPIFNSFIYPSRGVEKIGFLNLWARSRKGLSAVSVKKMGWSLENPDGDVETKKATVSPAAEDYGQEAIEAIRAGKVIAVPTDTLYGFACDACSAEAVNRIYEIKGRKHTSPLAICVGDVHDIKHYAVTDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="103106" e_stop="103195"/>
            <exon e_start="103808" e_stop="104045"/>
            <exon e_start="105959" e_stop="106024"/>
            <exon e_start="106266" e_stop="106557"/>
            <exon e_start="107255" e_stop="107715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103106" e_stop="103195" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103196" i_stop="103807" i_length="612"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103808" e_stop="104045" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.720">
            <gDNA_intron_boundary i_start="104046" i_stop="105958" i_length="1913"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105959" e_stop="106024" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.922">
            <gDNA_intron_boundary i_start="106025" i_stop="106265" i_length="241"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106266" e_stop="106557" e_length="292"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.951">
            <gDNA_intron_boundary i_start="106558" i_stop="107254" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="107255" e_stop="107715" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103106" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105959" stop="106024"/>
              <exon start="106266" stop="106557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103106" stop="103195"/>
              <exon start="103808" stop="104045"/>
              <exon start="105959" stop="106024"/>
              <exon start="106266" stop="106343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105982" stop="106024"/>
              <exon start="106266" stop="106557"/>
              <exon start="107255" stop="107592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106287" stop="106557"/>
              <exon start="107255" stop="107715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106300" stop="106557"/>
              <exon start="107255" stop="107629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106538" stop="106557"/>
              <exon start="107255" stop="107705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCAGACCCACAAAAATAGCCCAAATTCTGCCTATTTTCAACTCTTTCATATACCCTTCTCGAGGTGCTGTTTCATATTCACTCATC : GGGTGGAAAAAATTGGATTTTTGAACTTGTGGGCAAGAAGTAGGAAGGGTTTAAGTGCAGTTAGTGTGAAGAAAATGGGTTGGAGTTTGGAGAATCCTGATGGGGATGTAGAGACTAAGAAGGCTACTGTATCTCCTGCAGCAGAAGATTATGGTCAAGAGGCAATTGAAGCTATCAGGGCTGGGAAAGTCATAGCTGTTCCCACTGACACACTATATGGCTTTGCTTGTGATGCTTG : ATCATCTGCCTCTTGGCTTGCTTGACTGCCTGCTTCCTGGACCCGTGACTTTGGTCTTAAGGCGAG : GTGAGTCAAGTATCCTTGAGAAGTCATTAAACCCTGGATTAGAGAGCATAGGGGTTCGAGTGCCAGACTGTAACTTCATCAGGGTGATTGCTCGTGGTTCTAGAAGTGCCCTTGCACTTACTAGTGCAAATCTCAGCGGACAACCCAGTAGCATAGACATCAAAGATTTTGAGAACCTCTGGGAGCACTGTGCATATGTCTATGATGGCGGAATTCTTCCAGCTGGGCGAGCTGGATCGACAGTGGTGGATCTTACTAAGCTGGGGAAGTACAAGATTCTAAGACCTGGAAG : TGCAAAGGAAGAGACCATTGCTATCCTTGAAAGACACTCACTACTGGAAGATGGAACTGGAGATTAGCAAGCCGCTGCTCAAGTTGAAGCTGTTCAGCCAGACGAGCCTCGTGCCTGAGTTTGTAAAGTACAACTCATAAAAACTTGATTCGATGCAGTTGTGCTTCCTTTGTGTCAATGGAAAGGTTTCGTCCTTCTATTTGAAGTCGAGTAGAGGAGAGGAACACACCTTTGTTCATGCATTGTTGAGTTTGTCAATGGAAGTGTTCCAGTCAGTTACTAAATAGGATTCAAAGTGTGTTTTATGATTTCCCATTTGAGAGCCATTTACAATGTAATGAATCATGTTGTAACACGAAAATATCATATTTTTTTAATTTTTTGACTTCTGACATTCATTAGTGTCTTGCTTATGAATAATGAATGGAAAAAATTCTATTTATTTCTCAAAAATGTCAAAT</gDNA_template>
            <first_frame> C  S  R  P  T  K  I  A  Q  I  L  P  I  F  N  S  F  I  Y  P  S  R  G  A  V  S  Y  S  L  I  :  G  W  K  K  L  D  F  *  T  C  G  Q  E  V  G  R  V  *  V  Q  L  V  *  R  K  W  V  G  V  W  R  I  L  M  G  M  *  R  L  R  R  L  L  Y  L  L  Q  Q  K  I  M  V  K  R  Q  L  K  L  S  G  L  G  K  S  *  L  F  P  L  T  H  Y  M  A  L  L  V  M  L   : D  H  L  P  L  G  L  L  D  C  L  L  P  G  P  V  T  L  V  L  R  R   : G  E  S  S  I  L  E  K  S  L  N  P  G  L  E  S  I  G  V  R  V  P  D  C  N  F  I  R  V  I  A  R  G  S  R  S  A  L  A  L  T  S  A  N  L  S  G  Q  P  S  S  I  D  I  K  D  F  E  N  L  W  E  H  C  A  Y  V  Y  D  G  G  I  L  P  A  G  R  A  G  S  T  V  V  D  L  T  K  L  G  K  Y  K  I  L  R  P  G  S :   A  K  E  E  T  I  A  I  L  E  R  H  S  L  L  E  D  G  T  G  D  *  Q  A  A  A  Q  V  E  A  V  Q  P  D  E  P  R  A  *  V  C  K  V  Q  L  I  K  T  *  F  D  A  V  V  L  P  L  C  Q  W  K  G  F  V  L  L  F  E  V  E  *  R  R  G  T  H  L  C  S  C  I  V  E  F  V  N  G  S  V  P  V  S  Y  *  I  G  F  K  V  C  F  M  I  S  H  L  R  A  I  Y  N  V  M  N  H  V  V  T  R  K  Y  H  I  F  L  I  F  *  L  L  T  F  I  S  V  L  L  M  N  N  E  W  K  K  F  Y  L  F  L  K  N  V  K  </first_frame>
            <second_frame>  A  A  D  P  Q  K  *  P  K  F  C  L  F  S  T  L  S  Y  T  L  L  E  V  L  F  H  I  H  S  S :   G  G  K  N  W  I  F  E  L  V  G  K  K  *  E  G  F  K  C  S  *  C  E  E  N  G  L  E  F  G  E  S  *  W  G  C  R  D  *  E  G  Y  C  I  S  C  S  R  R  L  W  S  R  G  N  *  S  Y  Q  G  W  E  S  H  S  C  S  H  *  H  T  I  W  L  C  L  *  C  L  :  I  I  C  L  L  A  C  L  T  A  C  F  L  D  P  *  L  W  S  *  G  E  :  V  S  Q  V  S  L  R  S  H  *  T  L  D  *  R  A  *  G  F  E  C  Q  T  V  T  S  S  G  *  L  L  V  V  L  E  V  P  L  H  L  L  V  Q  I  S  A  D  N  P  V  A  *  T  S  K  I  L  R  T  S  G  S  T  V  H  M  S  M  M  A  E  F  F  Q  L  G  E  L  D  R  Q  W  W  I  L  L  S  W  G  S  T  R  F  *  D  L  E   : V  Q  R  K  R  P  L  L  S  L  K  D  T  H  Y  W  K  M  E  L  E  I  S  K  P  L  L  K  L  K  L  F  S  Q  T  S  L  V  P  E  F  V  K  Y  N  S  *  K  L  D  S  M  Q  L  C  F  L  C  V  N  G  K  V  S  S  F  Y  L  K  S  S  R  G  E  E  H  T  F  V  H  A  L  L  S  L  S  M  E  V  F  Q  S  V  T  K  *  D  S  K  C  V  L  *  F  P  I  *  E  P  F  T  M  *  *  I  M  L  *  H  E  N  I  I  F  F  *  F  F  D  F  *  H  S  L  V  S  C  L  *  I  M  N  G  K  N  S  I  Y  F  S  K  M  S  N </second_frame>
            <third_frame>   Q  Q  T  H  K  N  S  P  N  S  A  Y  F  Q  L  F  H  I  P  F  S  R  C  C  F  I  F  T  H   : R  V  E  K  I  G  F  L  N  L  W  A  R  S  R  K  G  L  S  A  V  S  V  K  K  M  G  W  S  L  E  N  P  D  G  D  V  E  T  K  K  A  T  V  S  P  A  A  E  D  Y  G  Q  E  A  I  E  A  I  R  A  G  K  V  I  A  V  P  T  D  T  L  Y  G  F  A  C  D  A  * :   S  S  A  S  W  L  A  *  L  P  A  S  W  T  R  D  F  G  L  K  A  R :   *  V  K  Y  P  *  E  V  I  K  P  W  I  R  E  H  R  G  S  S  A  R  L  *  L  H  Q  G  D  C  S  W  F  *  K  C  P  C  T  Y  *  C  K  S  Q  R  T  T  Q  *  H  R  H  Q  R  F  *  E  P  L  G  A  L  C  I  C  L  *  W  R  N  S  S  S  W  A  S  W  I  D  S  G  G  S  Y  *  A  G  E  V  Q  D  S  K  T  W  K  :  C  K  G  R  D  H  C  Y  P  *  K  T  L  T  T  G  R  W  N  W  R  L  A  S  R  C  S  S  *  S  C  S  A  R  R  A  S  C  L  S  L  *  S  T  T  H  K  N  L  I  R  C  S  C  A  S  F  V  S  M  E  R  F  R  P  S  I  *  S  R  V  E  E  R  N  T  P  L  F  M  H  C  *  V  C  Q  W  K  C  S  S  Q  L  L  N  R  I  Q  S  V  F  Y  D  F  P  F  E  S  H  L  Q  C  N  E  S  C  C  N  T  K  I  S  Y  F  F  N  F  L  T  S  D  I  H  *  C  L  A  Y  E  *  *  M  E  K  I  L  F  I  S  Q  K  C  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0161D01.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104003" stop="104045"/>
                    <exon start="105959" stop="106024"/>
                    <exon start="106266" stop="106557"/>
                    <exon start="107255" stop="107321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFPLTHYMALLVMLDHLPLGLLDCLLPGPVTLVLRRGESSILEKSLNPGLESIGVRVPDCNFIRVIARGSRSALALTSANLSGQPSSIDIKDFENLWEHCAYVYDGGILPAGRAGSTVVDLTKLGKYKILRPGSAKEETIAILERHSLLEDGTGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 231 chains have been computed
$ 
$ memory statistics:
$ 775936 bytes spliced alignments in total
$ 148 spliced alignments have been stored
$ 5242 bytes was the average size of a spliced alignment
$ 34432 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1721 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 279 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 20:59:57
-->
