<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:28:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367034" ref_strand="+" ref_description="SGN-E367034 [cLPT-5-A13]">
      <seq>atttttctaactctgtatactgtatgaattctgtattatacatacgaactgaaatggtgctgccattgtgtatttccaatcactctcacttcctctcccctttaagctcagtcgaattctctcctccgccaccgcagcgccgccgtgcacggcccagattcacgactgtactatccgtactcaaaacctctcgacccgtgagtgaagtcacagtggatgacgctctccgagatttcttgagggatagagagttaaatggggatgttatctcgagaatttctgatagaatctggctgaggaatgtggctggttttgattcggcagaagctgggagtgggacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="3659" stop="5145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3954" g_stop="4151" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4152" i_stop="4700" i_length="549">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4701" g_stop="4845" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="343" r_length="145" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E367034" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3954" e_stop="4151"/>
          <exon e_start="4701" e_stop="4845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACTCTCTCTATATATACTGTATAAATTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTCACTTCATCTCTCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCGGTAATGAATATACATGTTTTATTGAAAGAATTTTGAATTTTGTTACTACCCATTTGAGTAATTTGCTCGATAGTTACCTGTACTGAGAGAATTGTGAATGTTGTCACTACCCATTTGAGTAATTTGCATTTCTTTTTTCTTCTTGCTGAAGTGATTCGGTAGCTGGAAACTCAATAGTTACTTTTTTTAAGAGAGAATTGTGAATTTTATAACCACCCATTTGAGCAATTTGCTGTTTTTCTTCTTCTTGTTCAAGTGACACTCTGTAGCTGGAAACTCAGTAGTTGTCTTTTTTGGAGAATTGTGAAATTTATCAATTAGCGTCTTTTTTCGTGTTCTTTTTCAACTGACCCAGTAGCTGGTAACTCAACATTACTATTTCTGAAAGCATTGTGGAGTTTTTAACTTCCCATTTGAGTAATTTGTGTTTTTTAGTATTCTTGCCTAGTGACTTTGTTGCTGGAAACTAAAGAATGATGCTTTTTGGAAGCATTGTGAAATTTTTACTGCCCATTTGTGTAATTTCTTTTTAATCTTCTTGTCCACAAGTGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAG</genome_strand>
        <mrna_strand>ATTTTTCTAACTCTGTATACTGTATGAATTCTGTATTATACATACGAACTGAAATGGTGCTGCCATTGTGTATTTCCAATCACTCTCACTTCCTCTCCCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGCCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGAAGTCACAGTGGATGACGCTCTCCGAGATTTCTTGAGGGATAGAGAGTTAAATGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAATGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273160" ref_strand="+" ref_description="SGN-E273160 [cLEM-24-D4]">
      <seq>ttctgtatcatacatacgaactgaaatggtgctgccattgtgtattcccaatcactctgacttcatctctcctttaagctcaatcgaattctctcctccgccaccgcagcggcgccgtgcacggcccagattcacgactgtactatccgtactcaaaacctctcgacccgtgagtgaagtcacagtggatgacgctctacgagatttcttgagggatagagagttaaagggggatgttatctcgagaatttctgatagaatctggctgaggaacgtggctggttttgattcggcagaagctgggagtgggacaagtgaggctactcaatcggaggaggtatcaggggaagataatgaaggtgggtttttgaagttgaaaagtaccaaagagtggctttcaggtgacgccacggcgccagttaataaaaagaggacatttaaggaaatacaagatgacagggaaagaacgaaaaggctaaactttctccaatatgaagctcttaagagggagctacttttcttaacggtgggcattgggactgcttgcactggatactgtttggtagttttatcagtccaggctgctctgagctatgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="3682" stop="6778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3982" g_stop="4151" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4152" i_stop="4700" i_length="549">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4701" g_stop="4867" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="337" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4956" g_stop="5060" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5162" g_stop="5218" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="499" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5916" g_stop="5996" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="580" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6461" g_stop="6478" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="598" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E273160" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3982" e_stop="4151"/>
          <exon e_start="4701" e_stop="4867"/>
          <exon e_start="4956" e_stop="5060"/>
          <exon e_start="5162" e_stop="5218"/>
          <exon e_start="5916" e_stop="5996"/>
          <exon e_start="6461" e_stop="6478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTCACTTCATCTCTCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCGGTAATGAATATACATGTTTTATTGAAAGAATTTTGAATTTTGTTACTACCCATTTGAGTAATTTGCTCGATAGTTACCTGTACTGAGAGAATTGTGAATGTTGTCACTACCCATTTGAGTAATTTGCATTTCTTTTTTCTTCTTGCTGAAGTGATTCGGTAGCTGGAAACTCAATAGTTACTTTTTTTAAGAGAGAATTGTGAATTTTATAACCACCCATTTGAGCAATTTGCTGTTTTTCTTCTTCTTGTTCAAGTGACACTCTGTAGCTGGAAACTCAGTAGTTGTCTTTTTTGGAGAATTGTGAAATTTATCAATTAGCGTCTTTTTTCGTGTTCTTTTTCAACTGACCCAGTAGCTGGTAACTCAACATTACTATTTCTGAAAGCATTGTGGAGTTTTTAACTTCCCATTTGAGTAATTTGTGTTTTTTAGTATTCTTGCCTAGTGACTTTGTTGCTGGAAACTAAAGAATGATGCTTTTTGGAAGCATTGTGAAATTTTTACTGCCCATTTGTGTAATTTCTTTTTAATCTTCTTGTCCACAAGTGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAGGTATTTTGTTGATTACCCTTCCGTTTTCCAGGTTTTTAGTATTGGTTTGCTTGCTTTTGAACTTTGAAACAAAAGGATACCAATGCAGGTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAGGTGTTCATTAATAAGTTTTTGTTCTTTTTAATGGTGTTTTGAGTATTGTGATTCATGAGTACTTAGATTTTTGCCATTGATGCTTCTAATGATATGCACAGGAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCTGTACGTCCCGGTCAAGCATCTATGTTCTTGCTATTTTATATTCTTAAACATTTATAATTGCATAGCATTGGAATTCAAATACCGCTGTTTTAGAATGTGGAGACTCTACTCATAATATTTTTTGCTGGCCATCATCCTTATGACCTTATTGTGGTTCATGTTGTTTTATTTACTTTGGTGAAAGGTTGTCCAAAAGAAAAGGGGCTTCTTGATATTGCATTTGCCAATTTTTGACGTCTTAGATGGAGGACATTAGTAACACCCTGAGATTTTTCTTCTGTGTTTGTATTATCTCCTACTTCCAAAAATCTTTGCATGTCCTTATTGAAGAAAATGGGATATATTGTAGAATTTTATTGATGAAAGGTAGTCTGAATGGTTCTATGAGCACCTACACTATGCATGCATAGTGTGATCTGTTCAATGATTTATATAACAAGTATTTACCAACTTTTAAGAGTAAAATGAGTAGTTAAGGGCTGTTACAAAATCCTGCTGCTCCGAAGAGTATGAAAAGTGACAAGGAAAGGATTTCAAATGTTATTCTCTGACTATGGAAACATGGTATACTGAAGTTGTATCCAATTATAAGAGAGTATCTTCGCTGAGATACACAAAACAGATGTCTGCAAATGAATTTAACTATGTTTTGTTCTAAATGTACAAGGCTTAGATCATTTTTCTGTTCCTCTTGCAGCTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAATCACAATTAGTGATTGATTTACTGCAACCGGGAAAGCTTGCAATGGAGAGAGAGCCACTGAGTTCATACTTTCTTACAGTTACTATTTTAATAATAACCACCCAACCAACTTAGTAGAACAATTTCTGTTCCAATTAAATGTTCTTCCCATTTCTACTGCTTACTTGATGAGAAAAAACTGGTTTGGTTTTGGTAACCTTTTTCACTGGGTTATTCATCTGTTCTATCTTATGAAAGAGGTTTCAGGTTAGAAATATTTTCATCCGCGGTGGACTGACAGATATACTTATTCAATCTGTAGGCTGCTCTGAGCTATGCG</genome_strand>
        <mrna_strand>TTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTGACTTCATCTCTCCTTTAAGCTCAATCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAG........................................................................................GTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG.....................................................................................................GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTGAGCTATGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365346" ref_strand="+" ref_description="SGN-E365346 [cLPT-2-N11]">
      <seq>ttaaatggggatgttatctcgagaatttctgatagaatctggctgaggaatgtggctggttttgattcggcagaagctgggagtgggacaagtgaggctactcaatcagaggaggtatcaggggaagataatgaaggcgggtttttgaagttgaaaagtaccaaagagtggctttcaggtgacgccacggcgccagttaataaaaagaggacatttaaggaaatacaagatgacagggaaagaacgaaaaggctaaactttctccaatatgaagctcttaagagggagctacttttcttaacggtgggcattgggactgcttgcactggatattgtttggtagttttatcagtccaggctgctctgagctatgcgacaggagttgttttcagttgcctgtactatcagctcctctgccaacatgcagacaacctctcacaagaaacagntcctgatattttcacgaaaaagaaacttaagaaaatcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="4454" stop="7156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4754" g_stop="4867" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4956" g_stop="5060" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="219" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5162" g_stop="5218" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="276" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5916" g_stop="5996" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464">
            <donor d_prob="0.587" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6461" g_stop="6495" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="392" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6496" i_stop="6766" i_length="271">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6767" g_stop="6856" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="482" r_length="90" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E365346" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4754" e_stop="4867"/>
          <exon e_start="4956" e_stop="5060"/>
          <exon e_start="5162" e_stop="5218"/>
          <exon e_start="5916" e_stop="5996"/>
          <exon e_start="6461" e_stop="6495"/>
          <exon e_start="6767" e_stop="6856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAGGTATTTTGTTGATTACCCTTCCGTTTTCCAGGTTTTTAGTATTGGTTTGCTTGCTTTTGAACTTTGAAACAAAAGGATACCAATGCAGGTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAGGTGTTCATTAATAAGTTTTTGTTCTTTTTAATGGTGTTTTGAGTATTGTGATTCATGAGTACTTAGATTTTTGCCATTGATGCTTCTAATGATATGCACAGGAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCTGTACGTCCCGGTCAAGCATCTATGTTCTTGCTATTTTATATTCTTAAACATTTATAATTGCATAGCATTGGAATTCAAATACCGCTGTTTTAGAATGTGGAGACTCTACTCATAATATTTTTTGCTGGCCATCATCCTTATGACCTTATTGTGGTTCATGTTGTTTTATTTACTTTGGTGAAAGGTTGTCCAAAAGAAAAGGGGCTTCTTGATATTGCATTTGCCAATTTTTGACGTCTTAGATGGAGGACATTAGTAACACCCTGAGATTTTTCTTCTGTGTTTGTATTATCTCCTACTTCCAAAAATCTTTGCATGTCCTTATTGAAGAAAATGGGATATATTGTAGAATTTTATTGATGAAAGGTAGTCTGAATGGTTCTATGAGCACCTACACTATGCATGCATAGTGTGATCTGTTCAATGATTTATATAACAAGTATTTACCAACTTTTAAGAGTAAAATGAGTAGTTAAGGGCTGTTACAAAATCCTGCTGCTCCGAAGAGTATGAAAAGTGACAAGGAAAGGATTTCAAATGTTATTCTCTGACTATGGAAACATGGTATACTGAAGTTGTATCCAATTATAAGAGAGTATCTTCGCTGAGATACACAAAACAGATGTCTGCAAATGAATTTAACTATGTTTTGTTCTAAATGTACAAGGCTTAGATCATTTTTCTGTTCCTCTTGCAGCTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAATCACAATTAGTGATTGATTTACTGCAACCGGGAAAGCTTGCAATGGAGAGAGAGCCACTGAGTTCATACTTTCTTACAGTTACTATTTTAATAATAACCACCCAACCAACTTAGTAGAACAATTTCTGTTCCAATTAAATGTTCTTCCCATTTCTACTGCTTACTTGATGAGAAAAAACTGGTTTGGTTTTGGTAACCTTTTTCACTGGGTTATTCATCTGTTCTATCTTATGAAAGAGGTTTCAGGTTAGAAATATTTTCATCCGCGGTGGACTGACAGATATACTTATTCAATCTGTAGGCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAGGTTTGTTTGTAACTATTTTTAACTCCATCTATCCTGTTTACCGATCCTTCCAGTACTTGTAAACAGCCCAATTTTGCACATTTAGGCAGTTAAAAATGGATAGCTTATAATATCTAGAAATATGCTTTTACATTATCTAGACCTTACAAGTATGTTTATGGTAGAATCTTTACATTTGAACTACTCTTTTGCTTATGTTTCCCATAAAACTGGCTGCATCTTCAATTCGGTTTATTTCTCTGGGTAATTTTGTCTGTAATTTCTTATGCAGTTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAA</genome_strand>
        <mrna_strand>TTAAATGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAATGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCAGAGGAG........................................................................................GTATCAGGGGAAGATAATGAAGGCGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG.....................................................................................................GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATATTGTTTGGTAGTTTTATCAGTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAG...............................................................................................................................................................................................................................................................................TTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAAACAGNTCCTGATATTTTCACGAAAAAGAAACTTAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552275" ref_strand="+" ref_description="SGN-E552275 [cTSB-3-G19]">
      <seq>ttaagagggagctacttttcttaacggtgggcattgggactgcttgcactggatactgtttggtagttttatcagtccaggctgctctgagctatgcgacaggagttgttttcagttgcctgtactatcagctcctctgccaacatgcagacaacctctcacaagagacagttcctgatattttcacgaaaaagaaacttaagaaaatcggaatacgaagtgaagatctgcaggatttctttgagaaatctgttaaaggcagcagcattgctctttcatctcccaggcttgtgattcctgctgcaatatatggattgtgggaattgtctcagcatttcgcccatgatctatttgattttcagctggttcctgccatggttgggttgtttgtatataaagcagcttgcctggtgcaagtctacagagataatgaagaccttcaatttctttttcctgggaatgaagaagggtccggtgactgaatatctggaatatgttacttgttgatgcgatggtaaagttggatgtctacctgactacaccttctggcctaacagagagtaaccgacaaacagcaagctgaaatctttgcagagtaggacaagctttatgatgtcttgccttttaagaaagcaagatcgaaagggatgaatattacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="5617" stop="10373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5917" g_stop="5996" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464">
            <donor d_prob="0.587" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6461" g_stop="6495" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="115" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6496" i_stop="6766" i_length="271">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6767" g_stop="6856" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="205" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6857" i_stop="6952" i_length="96">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6953" g_stop="7109" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="362" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7110" i_stop="7257" i_length="148">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7258" g_stop="7444" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="549" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="9962" i_length="2518">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9963" g_stop="10073" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="662" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E552275" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5917" e_stop="5996"/>
          <exon e_start="6461" e_stop="6495"/>
          <exon e_start="6767" e_stop="6856"/>
          <exon e_start="6953" e_stop="7109"/>
          <exon e_start="7258" e_stop="7444"/>
          <exon e_start="9963" e_stop="10073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAGGTATTTGGTAGATTTTTTTTACATGTTCTGAGGTCATGAGACATTCTATAATAGAAGGCATATAGTGTTTCCTCACAACCATTGGTGGCTATGCTTAGTTGTGCTATATTTATCTAGATCTTCACTTGAGCTAGAAAAGCAATGGAGAGCACATGCGTGTAAATCACAATTAGTGATTGATTTACTGCAACCGGGAAAGCTTGCAATGGAGAGAGAGCCACTGAGTTCATACTTTCTTACAGTTACTATTTTAATAATAACCACCCAACCAACTTAGTAGAACAATTTCTGTTCCAATTAAATGTTCTTCCCATTTCTACTGCTTACTTGATGAGAAAAAACTGGTTTGGTTTTGGTAACCTTTTTCACTGGGTTATTCATCTGTTCTATCTTATGAAAGAGGTTTCAGGTTAGAAATATTTTCATCCGCGGTGGACTGACAGATATACTTATTCAATCTGTAGGCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAGGTTTGTTTGTAACTATTTTTAACTCCATCTATCCTGTTTACCGATCCTTCCAGTACTTGTAAACAGCCCAATTTTGCACATTTAGGCAGTTAAAAATGGATAGCTTATAATATCTAGAAATATGCTTTTACATTATCTAGACCTTACAAGTATGTTTATGGTAGAATCTTTACATTTGAACTACTCTTTTGCTTATGTTTCCCATAAAACTGGCTGCATCTTCAATTCGGTTTATTTCTCTGGGTAATTTTGTCTGTAATTTCTTATGCAGTTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAAGTAATGTCATAACTTAACTATGTTTTTGTTTGGTTATTCTCCACATAAGAATGGTAAGCTTGATTGATTGGATGATCTAATATTTCTTCCTCTCAGAATCGGAATACGAAGTGAAGATCTGCAGGATTTCTTTGAGAAATCTGTTAAAGGCAGCAGCATTGCTCTTTCATCTCCCAGGCTTGTGATTCCTGCTGCAATATATGGATTGTGGGAATTGTCTCAGCATTTCGCCCATGATCTATTTGATTTTCAGGTAATGCTTTGTACATTTACGGCTTTTGAATTAACACTTATATATACATTTAATTTAGAATCTTGACTTATTTATGCGATCCTCTGTTTGATTCCTCTGATTATGGCTGTTCATCAGTTAACGTGACATATGTTTGGGATCTTAACAGCTGGTTCCTGCCATGGTTGGGTTGTTTGTATATAAAGCAGCTTGCCTGGTGCAAGTCTACAGAGATAATGAAGACCTTCAATTTCTTTTTCCTGGGAATGAAGAAGGGTCCGGTGACTGAATATCTGGAATATGTTACTTGTTGATGCGATGGTAAAGTTGGATGTCTACCTGACTACACCTTCTGGGTAATGACTCTTTCTAAAGCTTTTAGTCATCTCAAAGGTTTTGTGGATACCAAAAACCATCAGTTGAGGACTTCTCTCCTTTCAATTAATGATCCATATGAAGTTCTAGAGAATTGACCACCATGAACTTTCCAATGAATGCAATTAAGAATCATTTTAAAAGAAGTTGGAAACATACCTTAAATACTTCTTTTTTTTATATATGTACTCCACAAAAAACCTTTAAGAAATTTATATGATATTTTCTTATATATTAGTGCAAGTAAATAAAATATGTTCTTATTAATCAACATTCCTTGCAATACTATGTACATTCTATACAGGCTTATTTACGTACTGTATTAGTTACTGGTAAACATTACTCTGTCAAGGAAGTTCCTGTACTTCAAAAAAAAAAGGTGTTTCCTTAGTTCCTTATAGTTCTTTGAGGCCAAAAGTGCTTTGATCCTTTTTGCACTTCTTATATATTTGATAGTTTCCTACAATAACATACCCAATGTAATCCCATAAGTGGGGTCTTGGAAGGTTGGTGTGAAGATACAGAGGTTGTTTCTATTAGCCCCTTGGTTGAAGTATAAAGCATATTAAATCAGGTATGAAAAAGAAATACAGTAGTGAAAAAACCATGTTGAAAAATAACGGAGAAAATAATAGTAGCAATAGCAAATAATACGATAATCGAAAGCAAGGGAAATACAAAGTAATAATAAAATCAAAGAACCTCGCTCCCAAAATGAAGTTGTTCAATTACTTCAAACTCTTAGATACTTCTCTACATGTGCCCCCTGCGCATGTGCGCTCACACACACAAAAGGATGAGACATCTTGGAGAATTTATCATGCAATAGGAACTAGGTACCAACAGTCTGCTATGGCTAGGGAGTAGCTTTTGCCTACAGAGGGGCAATATTTGTAATGTGAGTATCAGAGATACTATTGAAGTAATTGAGATACCAAGTGGTTAAGTCGTAGTTCTTTAGCTTAGAAGAAATACACATGAGGATCTAAGTGAATTGGCTTTGAAAATAGGGAATGACTTGGCAAAGGAAGGATCATGTTCTCATAAATAGTATCTAGAGGAAGGGCTTTCTTGTTGCTTATCAACACACACACACATAGCTAGAGGGGGTGGGTGGGTGGGTGGGGGGTACCCATACTACCAAAATGTAGTGTCTGAACTCCCCAAATATAAGCCAGATGATTAAAGAGCACTAAGGTGGAGTTCAACAGTTCAACTAGTATCACGAGGAATAGATGTAGAGAAATCTTTTTTTTTTTTGGATCTTACAGAGTAGAGAAGATACCCCAAACCAATTCTTGGATTGGATAGAAATTTCAAGTGTAATTTGATCATATCAGATAGGAAGGACATTTCGTTGTGGTTGTGGGGCAGGATGATTCTGGAAACTTTTCTGGTTACAAAATGGAACCTAAGTATCTGTGTAACCCAACATTATCTTTTTCTCTCTAATAGAAGTATGTTAGCCACCATTCTCAAACCATGAGGTGTTCATTGGTTTTGGTTTCGTCCATCTCACCATTCTTTTTATGCACATCTCTTTTCTTCTCCTTTCCTATTTCTTCCAAAATTACTATCCGATCTGATGAGATTCGTCAATGGTTGGCTGTGGCAAGTCTGATGTCGCAAATTCCACTCTAAATTTAAAAACTCCGAGCTTTGCAGATATACTTAAGGATGGGCTGTTCTAAGTACGAGAAGTTTGAGAGATTGACTGAGTCGTAGCTGCAGACAGAGGAGAAGAAAATCCTAGCAACTGTTGTATTATGCTGTGCCTGTAACAAAAAAATTTAGCAATCGGGGTGGCCCAGTGGTTTGGGCTTGGGATTTTCTTGTTGGAGGTCTCAAGTTCGGAACCCCTTGCCGGCGAAAGCAAGGGAATTTTCCTTTTGGGTCGAGCTCGTCGCACCGGGCTTGCCTACCGCGGGTTACCTCTCCTGTGTGATTTGAGAGTTATTACATAGGAGCGGGGTTTTACACCCCATGTGCATCCAAAGGGTAGCGCTGCGGGTTTCCCTAGTCATAAAAAAAGAGGACTGAACCAGATATTAGTAAAAGGATAATTGTTTCTTTCACTTAAGCATGATGTATGGGTTAGGCACATGACATGTGTTTGAACTCTACTGAAGAGAAAGCTAATATTTAAGTGTGGAAGGCTAGAACAGGTCCATTATCCTTCGATTTTTAAGCTGTGTGCCTCTGGACCTTAGGAATTTCTCAGTTACAAAAAAAAGAAAAGATAATGCATCTGTCACCGTGTATTGCGGTTCGGATAAAGAAGAACAGCTCGTGAATGTTATTTCAGACGAAATATAAACAAGACTCTGCCATAGTATCAAATACCTAAACTTGAAATCGCTTGTAGGGTCGTATATCATGTCTCGACTTTTACAGTTTTGAGGTTTGGATTTTACATTCCATTTTGATCTTGCTGTTAATGATCATGCCGTAGAAACAAGACTATGTCTCTTTTGCTCTTTAACACCACTTCTTCTGCAGCCTAACAGAGAGTAACCGACAAACAGCAAGCTG-AATCTTTGCAGAGTAGGACAAGCTTTATGATGTCTTGCCTTTTAAGAAAGCAAGATCG-AAGGGATGAATATTACACTG</genome_strand>
        <mrna_strand>TTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAG...............................................................................................................................................................................................................................................................................TTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAA................................................................................................AATCGGAATACGAAGTGAAGATCTGCAGGATTTCTTTGAGAAATCTGTTAAAGGCAGCAGCATTGCTCTTTCATCTCCCAGGCTTGTGATTCCTGCTGCAATATATGGATTGTGGGAATTGTCTCAGCATTTCGCCCATGATCTATTTGATTTTCAG....................................................................................................................................................CTGGTTCCTGCCATGGTTGGGTTGTTTGTATATAAAGCAGCTTGCCTGGTGCAAGTCTACAGAGATAATGAAGACCTTCAATTTCTTTTTCCTGGGAATGAAGAAGGGTCCGGTGACTGAATATCTGGAATATGTTACTTGTTGATGCGATGGTAAAGTTGGATGTCTACCTGACTACACCTTCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAACAGAGAGTAACCGACAAACAGCAAGCTGAAATCTTTGCAGAGTAGGACAAGCTTTATGATGTCTTGCCTTTTAAGAAAGCAAGATCGAAAGGGATGAATATTACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203549" ref_strand="+" ref_description="SGN-E203549 [cLEC-15-L1]">
      <seq>ttattcatgctaacattccttatcctgtgtattttgcttttgaggatgataatatcaatgctgtactagctgaagtcaagagaaatgatgctagtggtcaacctgcaactgctacaacaggcggatacaagcttgttgttgctgcctcagatcctaagaaaattgcatctcccaccattacaaatattcagggatggttacccgggcttaaacctgatggagactcaagtcaactccctactattgccatagtggcttcgtatgacacgtttgggggctgcaccgcattgtcagttggaagtgatagcaatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="13598" stop="17688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13898" g_stop="13917" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13918" i_stop="15199" i_length="1282">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15200" g_stop="15303" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="124" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15991" g_stop="16057" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="191" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17184" g_stop="17275" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="284" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17276" i_stop="17355" i_length="80">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17356" g_stop="17388" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="317" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E203549" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13898" e_stop="13917"/>
          <exon e_start="15200" e_stop="15303"/>
          <exon e_start="15991" e_stop="16057"/>
          <exon e_start="17184" e_stop="17275"/>
          <exon e_start="17356" e_stop="17388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCATGCTAACATTCCTGTGAGGCAAACACATCCTTGATTATCTTTTTCTTCTTTTCTGTTTTTTTTTGCACCTGGTTATCTTCAGCGGTGTGATGCATTAGATTTATACTACACCTTAATCATGTTCCTAAAAGATGCCTTGACCTTTGTTTAGGGGCCTATTTTGTTTTGTTCGTTTTGGTTTATTCTTGCTGTCTAGCAGATTTAATCTGTCATAATTAAATAATTCTCTAATCATCAGTGGTTTCCTTTTTTTTTTTTTTTTTGGGAAAATCAATTTTTAGTAATAGTAACCAACTATATTTGGTGATAAAAAATGAAGGTCAAATCATTTTAAAGTGATGAATATGAACACTCAAAGTAGTTTTAGTCAATCCTAGTAAAATACTAAAATATTGTATATATAGGAACATGGTGGCTCAGTATGATAAAAACAGAATGTCATAGAGGCATTGACAGTGATTTGATGTGGATTATGATGACTATGACGGTTATTGATGGAATTGTATAGTATCTTTACTTTTTTGGTGTGAACAACTTTGTATTAGATGATATAGATCAGATTATAGATTTGATAGGAAATCTGTAATTATCCCAGTAGCCAACATATCCTTACTGCTGAAGAATACAACCTTGCCATTTTTTATTTTTTTATTTTTAAAAGAAGGTTATCTTTCGCATATGGAATATTTGCCTTAGACTTCCTTTTCGCAAGGATGAGATAAGTATAATATTATGTTAAAAACAATGTCCATATGTATAGTCTATCCTTCCAATTGTTCATAGAACAAAAGAAAATTGAGCAATTGTAGTTGCAACTCCCTCTGACTTATATGAACTAATCTAGGTATTATCATAAATTGGATAAGTATTTTAGAACCTAATTTTGTATTAGAACAGGGAGTTGAAGTTTCCAGAAAAGATAAGTGTCGTGCATGTTTGTAGATTCTTTACCTTTTGATTTACCTCCTGGATATGGCTTTTTGGCCATGTTCATTAATGAAAATATTATTTACCTGATAAAAAAAAAGGTGTAGTGCATGGACCTGTGACTCCATTTATATGTGATTTTATATAATTGAGTTCACAGCATTTTGTGACAACTTCTCTTTCAAATATAGGAAAATGTGACTTTTGGTATTGGATAGAGTTTTTAATTTTGTATTGCTTATCTACTGACTTCACCAGACTTATCTTGCGTGGATAGCATTTGTGGTTTATTTGCATTTTCCTCATGTTGATTTCATCTATATGATATAAATTTAGTGATTGTTTAACTGTATGATATTCTCTTCCAGTATCCTGTGTATTTTGCTTTTGAGGATGATAATATCAATGCTGTACTAGCTGAAGTCAAGAGAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGGGTAAGTTTGTGTCTCATTATTATTGCTGAGAGAGACGCTGCCTCTTTTGCTTTATGACAAGTTACTAAAACATGACAATACTGGACTGATGTCCTACAGATCTCTAAACAGTCTGATTAATTTGTTTTTGTTGTTAATGAGCTTGTTAAATTTCTATACCATCTGCAGTCTCCATTATAAATTTAAATGCTTCTGTTCATCTTTATTCTTCAGCTAACTCTTCAGATTTTGTTACTGTCAAAATAAGATTTTGAACTGATAAGTTGGATTACTATCAGTGATCTGTCTACTGGATACATGCTTGTCCACGCAAAGATAGAAAATAAGAAAAGAAAAATGTAACTACATCAGAATATTTGGCAACTAACTGGTTGTGCATATATTTATTTGTTTTCTTAAATAACTAGCACAACATGTAACGTGTCAAATATTAAAGTAAATGATGAAATCGTATATAAAGTTGCTTTGAAAATTCAAGTTATTGCAACTGTTGAATGATTTTTCAGTTACTATCTATTAAGTTTATCAACTAATTTTGTGTCCCTAGAAGGAAAATGTGTCAGAGGACATGGACCAGAATGAGTATCAGATATTTGGCATATTGTTTCTGTCATTGTGGTTCAGTTTGAATTGTCAAATTGGTTTCACTTTCTCTTGTTAATGATTCCACTGATCACATGTCTACAGATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAGGTTCTAGTTCACTTCCTGAGAAGTTTGATTTACTATGAATTTTCTAATGACATTGACCACCCGTACTAGCCTAAAAAGACAACATGCTTGATAACTAAAATTTATCTCCCCTTTCTCTATCAGTTGTGGTCATTTTCTCTCAGATTTTATTGGAGCTACTGCTTTGCTTTAATGTAATTAGCTATTGATGAGATTGAGGAGGAATTTTTTAGTGTATAGGGGATGCAGGTGTCTACAAATTTAATTCATAGCGTGTTGTTACTTGATATTGTTAGTGTTGGCATACTTACTATCTCTGGCTTATGATTCTAGAAGCAAGGAAAAGCAATAAGCTTTTCCTTCATTCTTATGATTCTGATCTGGCTGGACACTCAGATCTTGCTGTCCAAGCACTATGGAATATGAATACAATATGTGGTGGCATACTTGTTATATATGGCTCATCACTCCTGGAAGGAAGCATAAAGCTATCCTCAATTATATGCATTTTGATCGGATGTCCTAGCTACTACATGTTGCTAGCTGATATCCAAGCAATAGGATAACACAGTCAGAACCAAATTAAACCTGTAGTAACTAGACTATATATGGTTAGTAATATGTATATAAACATCGTTTGTTCATATTGATGTCAATTTAGGAAAGGAAGTGGATCTACTTGTTTCATTTTCCCATGTAGAGAATATACTTTTCTTTCTTTGGTTGCCCAAATTAACCGCATTAATTTAGGTAGTTGGAAATGTTTGCGGTACTTCATTTGCACGCAGAAGATGCTGTGTATATTGCAACTCCCTCTGTAGTTACAAATACCATTTGACGTTTTGGATTTCCCTATTTATTCATTTCATAGATTTATTTCCCTGTAGTTGTAAATCAAAATTTTGTTCTACAGTCATTCTCAAATTTCCTAGTTACCATAGATTATTTCTTGAATTATTATAGTACAGATGCTCAAATATCTTACAATAGCAATCTAAAATATGCACTGGCTAACTTACCAATTCTCAAAGAAGTAATAGCTAAGTTAATCAATAAAGTTAAAATGTAGTTAACTGCTATTTGGAAGTTAATTTATTGAGCATTTATTATAAGGGATGTTCACATTTTTCTTTGGGGCTGAATTCAGGGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTT-GGGGCTGCACCGGTAAATGATACTTGCGTTAACTTGTGAGATGCCACTATCCACTCTGACATTAATCACTTAATCATGGTATAATCTGCAGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGT</genome_strand>
        <mrna_strand>TTATTCATGCTAACATTCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTGTGTATTTTGCTTTTGAGGATGATAATATCAATGCTGTACTAGCTGAAGTCAAGAGAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGGCTGCACC................................................................................GCATTGTCAGTTGGAAGTGATAGCAATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344556" ref_strand="+" ref_description="SGN-E344556 [cTOF-14-E1]">
      <seq>gaaatgatgctagtggtcaacctgcaactgctacaacaggcggatacaagcttgttgttgctgcctcagatcctaagaaaattgcatctcccaccattacaaatattcagggatggttacccgggcttaaacctgatggagactcaagtcaactccctactattgccatagtggcttcgtatgacacgtttggggctgcaccggcattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="14961" stop="19207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15261" g_stop="15303" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="16057" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="110" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17184" g_stop="17276" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="203" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17356" g_stop="17520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="368" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="509" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="587" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18837" g_stop="18907" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="658" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E344556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15261" e_stop="15303"/>
          <exon e_start="15991" e_stop="16057"/>
          <exon e_start="17184" e_stop="17276"/>
          <exon e_start="17356" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGGGTAAGTTTGTGTCTCATTATTATTGCTGAGAGAGACGCTGCCTCTTTTGCTTTATGACAAGTTACTAAAACATGACAATACTGGACTGATGTCCTACAGATCTCTAAACAGTCTGATTAATTTGTTTTTGTTGTTAATGAGCTTGTTAAATTTCTATACCATCTGCAGTCTCCATTATAAATTTAAATGCTTCTGTTCATCTTTATTCTTCAGCTAACTCTTCAGATTTTGTTACTGTCAAAATAAGATTTTGAACTGATAAGTTGGATTACTATCAGTGATCTGTCTACTGGATACATGCTTGTCCACGCAAAGATAGAAAATAAGAAAAGAAAAATGTAACTACATCAGAATATTTGGCAACTAACTGGTTGTGCATATATTTATTTGTTTTCTTAAATAACTAGCACAACATGTAACGTGTCAAATATTAAAGTAAATGATGAAATCGTATATAAAGTTGCTTTGAAAATTCAAGTTATTGCAACTGTTGAATGATTTTTCAGTTACTATCTATTAAGTTTATCAACTAATTTTGTGTCCCTAGAAGGAAAATGTGTCAGAGGACATGGACCAGAATGAGTATCAGATATTTGGCATATTGTTTCTGTCATTGTGGTTCAGTTTGAATTGTCAAATTGGTTTCACTTTCTCTTGTTAATGATTCCACTGATCACATGTCTACAGATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAGGTTCTAGTTCACTTCCTGAGAAGTTTGATTTACTATGAATTTTCTAATGACATTGACCACCCGTACTAGCCTAAAAAGACAACATGCTTGATAACTAAAATTTATCTCCCCTTTCTCTATCAGTTGTGGTCATTTTCTCTCAGATTTTATTGGAGCTACTGCTTTGCTTTAATGTAATTAGCTATTGATGAGATTGAGGAGGAATTTTTTAGTGTATAGGGGATGCAGGTGTCTACAAATTTAATTCATAGCGTGTTGTTACTTGATATTGTTAGTGTTGGCATACTTACTATCTCTGGCTTATGATTCTAGAAGCAAGGAAAAGCAATAAGCTTTTCCTTCATTCTTATGATTCTGATCTGGCTGGACACTCAGATCTTGCTGTCCAAGCACTATGGAATATGAATACAATATGTGGTGGCATACTTGTTATATATGGCTCATCACTCCTGGAAGGAAGCATAAAGCTATCCTCAATTATATGCATTTTGATCGGATGTCCTAGCTACTACATGTTGCTAGCTGATATCCAAGCAATAGGATAACACAGTCAGAACCAAATTAAACCTGTAGTAACTAGACTATATATGGTTAGTAATATGTATATAAACATCGTTTGTTCATATTGATGTCAATTTAGGAAAGGAAGTGGATCTACTTGTTTCATTTTCCCATGTAGAGAATATACTTTTCTTTCTTTGGTTGCCCAAATTAACCGCATTAATTTAGGTAGTTGGAAATGTTTGCGGTACTTCATTTGCACGCAGAAGATGCTGTGTATATTGCAACTCCCTCTGTAGTTACAAATACCATTTGACGTTTTGGATTTCCCTATTTATTCATTTCATAGATTTATTTCCCTGTAGTTGTAAATCAAAATTTTGTTCTACAGTCATTCTCAAATTTCCTAGTTACCATAGATTATTTCTTGAATTATTATAGTACAGATGCTCAAATATCTTACAATAGCAATCTAAAATATGCACTGGCTAACTTACCAATTCTCAAAGAAGTAATAGCTAAGTTAATCAATAAAGTTAAAATGTAGTTAACTGCTATTTGGAAGTTAATTTATTGAGCATTTATTATAAGGGATGTTCACATTTTTCTTTGGGGCTGAATTCAGGGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCGGTAAATGATACTTGCGTTAACTTGTGAGATGCCACTATCCACTCTGACATTAATCACTTAATCATGGTATAATCTGCAGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGC</genome_strand>
        <mrna_strand>GAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG...............................................................................GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307015" ref_strand="+" ref_description="SGN-E307015 [cLEY-11-N18]">
      <seq>gctagtggtcaacctgcaactgggacaacttgcggatacaagcttgttgttgctgcctcagatcctaagaaaattgcatctcccaccattacaaatattcagggatggttacccgggcttaaacctgatggagactcaagtcaactccctactattgccatagtggcttcgtatgacacgtttggggctgcaccggcattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="14969" stop="18202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15269" g_stop="15303" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15991" g_stop="16057" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="102" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17184" g_stop="17276" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="195" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17356" g_stop="17520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="360" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="501" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17846" g_stop="17902" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="558" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E307015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15269" e_stop="15303"/>
          <exon e_start="15991" e_stop="16057"/>
          <exon e_start="17184" e_stop="17276"/>
          <exon e_start="17356" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGTGGTCAACCTGCAACTGCTACAACAGGCGGGTAAGTTTGTGTCTCATTATTATTGCTGAGAGAGACGCTGCCTCTTTTGCTTTATGACAAGTTACTAAAACATGACAATACTGGACTGATGTCCTACAGATCTCTAAACAGTCTGATTAATTTGTTTTTGTTGTTAATGAGCTTGTTAAATTTCTATACCATCTGCAGTCTCCATTATAAATTTAAATGCTTCTGTTCATCTTTATTCTTCAGCTAACTCTTCAGATTTTGTTACTGTCAAAATAAGATTTTGAACTGATAAGTTGGATTACTATCAGTGATCTGTCTACTGGATACATGCTTGTCCACGCAAAGATAGAAAATAAGAAAAGAAAAATGTAACTACATCAGAATATTTGGCAACTAACTGGTTGTGCATATATTTATTTGTTTTCTTAAATAACTAGCACAACATGTAACGTGTCAAATATTAAAGTAAATGATGAAATCGTATATAAAGTTGCTTTGAAAATTCAAGTTATTGCAACTGTTGAATGATTTTTCAGTTACTATCTATTAAGTTTATCAACTAATTTTGTGTCCCTAGAAGGAAAATGTGTCAGAGGACATGGACCAGAATGAGTATCAGATATTTGGCATATTGTTTCTGTCATTGTGGTTCAGTTTGAATTGTCAAATTGGTTTCACTTTCTCTTGTTAATGATTCCACTGATCACATGTCTACAGATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAGGTTCTAGTTCACTTCCTGAGAAGTTTGATTTACTATGAATTTTCTAATGACATTGACCACCCGTACTAGCCTAAAAAGACAACATGCTTGATAACTAAAATTTATCTCCCCTTTCTCTATCAGTTGTGGTCATTTTCTCTCAGATTTTATTGGAGCTACTGCTTTGCTTTAATGTAATTAGCTATTGATGAGATTGAGGAGGAATTTTTTAGTGTATAGGGGATGCAGGTGTCTACAAATTTAATTCATAGCGTGTTGTTACTTGATATTGTTAGTGTTGGCATACTTACTATCTCTGGCTTATGATTCTAGAAGCAAGGAAAAGCAATAAGCTTTTCCTTCATTCTTATGATTCTGATCTGGCTGGACACTCAGATCTTGCTGTCCAAGCACTATGGAATATGAATACAATATGTGGTGGCATACTTGTTATATATGGCTCATCACTCCTGGAAGGAAGCATAAAGCTATCCTCAATTATATGCATTTTGATCGGATGTCCTAGCTACTACATGTTGCTAGCTGATATCCAAGCAATAGGATAACACAGTCAGAACCAAATTAAACCTGTAGTAACTAGACTATATATGGTTAGTAATATGTATATAAACATCGTTTGTTCATATTGATGTCAATTTAGGAAAGGAAGTGGATCTACTTGTTTCATTTTCCCATGTAGAGAATATACTTTTCTTTCTTTGGTTGCCCAAATTAACCGCATTAATTTAGGTAGTTGGAAATGTTTGCGGTACTTCATTTGCACGCAGAAGATGCTGTGTATATTGCAACTCCCTCTGTAGTTACAAATACCATTTGACGTTTTGGATTTCCCTATTTATTCATTTCATAGATTTATTTCCCTGTAGTTGTAAATCAAAATTTTGTTCTACAGTCATTCTCAAATTTCCTAGTTACCATAGATTATTTCTTGAATTATTATAGTACAGATGCTCAAATATCTTACAATAGCAATCTAAAATATGCACTGGCTAACTTACCAATTCTCAAAGAAGTAATAGCTAAGTTAATCAATAAAGTTAAAATGTAGTTAACTGCTATTTGGAAGTTAATTTATTGAGCATTTATTATAAGGGATGTTCACATTTTTCTTTGGGGCTGAATTCAGGGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCGGTAAATGATACTTGCGTTAACTTGTGAGATGCCACTATCCACTCTGACATTAATCACTTAATCATGGTATAATCTGCAGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAA</genome_strand>
        <mrna_strand>GCTAGTGGTCAACCTGCAACTGGGACAACTTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG...............................................................................GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312815" ref_strand="+" ref_description="SGN-E312815 [cTOA-8-E15]">
      <seq>gagactcaagtcaactccctactattgccatagtggcttcgtatgacacgtttggggctgcaccggcattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtgaagcctccatcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="16912" stop="19356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17212" g_stop="17276" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17356" g_stop="17520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="230" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="371" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="562" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19028" g_stop="19056" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="591" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E312815" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17212" e_stop="17276"/>
          <exon e_start="17356" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCGGTAAATGATACTTGCGTTAACTTGTGAGATGCCACTATCCACTCTGACATTAATCACTTAATCATGGTATAATCTGCAGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTGAAGCCTCCATCATTC</genome_strand>
        <mrna_strand>GAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG...............................................................................GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTGAAGCCTCCATCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312818" ref_strand="+" ref_description="SGN-E312818 [cTOA-8-G13]">
      <seq>gagactcaagtcaactccctactattgccatagtggctgggtatgacacgtttggggctgcaccggcattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="16912" stop="19341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17212" g_stop="17276" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17356" g_stop="17520" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="230" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="371" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="449" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="562" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19028" g_stop="19041" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="576" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E312818" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17212" e_stop="17276"/>
          <exon e_start="17356" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCGGTAAATGATACTTGCGTTAACTTGTGAGATGCCACTATCCACTCTGACATTAATCACTTAATCATGGTATAATCTGCAGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTG</genome_strand>
        <mrna_strand>GAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTGGGTATGACACGTTTGGGGCTGCACCG...............................................................................GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209810" ref_strand="+" ref_description="SGN-E209810 [cLEC-52-J18]">
      <seq>cggcattgtcagttggaagtgatagcaatggaagtggtgttgtggcacttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17055" stop="19247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17354" g_stop="17520" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="308" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="386" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18837" g_stop="18947" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="497" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E209810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17354" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAAC</genome_strand>
        <mrna_strand>CGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375862" ref_strand="+" ref_description="SGN-E375862 [TUS-15-E8]">
      <seq>ttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtgaagcctccatcattcgaagtgtcaagcttgttgctgaaagtgtagcaagacatatatacagccaggaaggaaaaggcacaaatatatttgcagacgatggtagtttagctgtcaatccttcctatgtacggtcctggctggatcttttgtctactacctctcgagtggcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17102" stop="20542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17402" g_stop="17520" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="260" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="338" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="451" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19028" g_stop="19088" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="512" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20116" g_stop="20242" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="639" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E375862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17402" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19088"/>
          <exon e_start="20116" e_stop="20242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCAGTAAGTATCTACATCTTTGCCGCCAAACCTGTTCCAAACATGATGAAATAATAATGATAGAAATCTGATTTTATTAACCATCAAACAACCAACCTTCAAGTGACATTTTCTTCTTTTTGAGAAATAGACAACTGTGACCGAACTGTTTTAAATTGAAAAATAATAAGGGGAGGCTTCTTTGGCCTCTCATGGGAACTTTTATGTGTGTCACTTCTATGACTTTCTCTTTTTGTTAAGATATTCATTGTGTTTAATGCTTTGCATGCATACAGTTTTATACATAATCAACATAAACCTCATAATTTAATTGACATAAACAAGATAGTTTAGTGAACCATATCTACATCGTCATTCCATGACTTCATTCAATTGACAAATTTACTTTCATTTGAAGGTCTCTTCATGTTTCCACAAGAACATTAAAGCTCTGGTCAATTCCTGGAAGTAGTTTTTTTAGCTCATAAATTAATTATATGCTATTTTATTGTTGTTGCACCTTCTCTTTAAATTAGTCAGATGAACAATACTAGAATTTTACATGATTTTGTTGAAGCATAACTGTTAAAGATCCTTAGGATGAGGATAAATCTAACAATTTCAGGATGTATGTATAGAACTACATGCCATATTAGATGGGCATCTTACTAAAAGTATCTATGATAAATATGGCCTTGGAAGTTCAAAACAAGTTTTGAAGATCAAGAGTTAATATGGAGTACAACGCTCCGTGTGCCTTTCTCACTGTTTGTACGACAGTGTTTTGTCTATTGTTAATCTTCTTGGAGTGTGCTGTATGTAAGATGTTTTGGTGGTAGGACTTCTCTGGAAAAAGAATTTTTTTCTATAGATTTTCATGTGGACACATTATTTTGCAGCCTTGTATGCCTTGTTATTTTTGGTATACTTTCTGTTATGTAATTGAGTATGAAATGTTGCTTATTATATCCCCGATGAGAAATATCTTTTTTTTTTTTTACATTTGTTAAAGGATATGGTAGTTGTGCTGTCTAACAAGTAATGTACACAGAGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTT</genome_strand>
        <mrna_strand>TTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204224" ref_strand="+" ref_description="SGN-E204224 [cLEC-13-F15]">
      <seq>ttcttgagatagctaggctgttttctgttctgtattcaaatcctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtgaagcctccatcattcgaagtgtcaagcttgttgctgaaagtgtagcaagacatatatacagccaggaaggaaaaggcacaaatatatttgcagacgatggtagtttagctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17102" stop="20481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17402" g_stop="17520" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="260" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="338" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="451" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19028" g_stop="19088" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="512" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20116" g_stop="20181" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="578" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E204224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17402" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19088"/>
          <exon e_start="20116" e_stop="20181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCAGTAAGTATCTACATCTTTGCCGCCAAACCTGTTCCAAACATGATGAAATAATAATGATAGAAATCTGATTTTATTAACCATCAAACAACCAACCTTCAAGTGACATTTTCTTCTTTTTGAGAAATAGACAACTGTGACCGAACTGTTTTAAATTGAAAAATAATAAGGGGAGGCTTCTTTGGCCTCTCATGGGAACTTTTATGTGTGTCACTTCTATGACTTTCTCTTTTTGTTAAGATATTCATTGTGTTTAATGCTTTGCATGCATACAGTTTTATACATAATCAACATAAACCTCATAATTTAATTGACATAAACAAGATAGTTTAGTGAACCATATCTACATCGTCATTCCATGACTTCATTCAATTGACAAATTTACTTTCATTTGAAGGTCTCTTCATGTTTCCACAAGAACATTAAAGCTCTGGTCAATTCCTGGAAGTAGTTTTTTTAGCTCATAAATTAATTATATGCTATTTTATTGTTGTTGCACCTTCTCTTTAAATTAGTCAGATGAACAATACTAGAATTTTACATGATTTTGTTGAAGCATAACTGTTAAAGATCCTTAGGATGAGGATAAATCTAACAATTTCAGGATGTATGTATAGAACTACATGCCATATTAGATGGGCATCTTACTAAAAGTATCTATGATAAATATGGCCTTGGAAGTTCAAAACAAGTTTTGAAGATCAAGAGTTAATATGGAGTACAACGCTCCGTGTGCCTTTCTCACTGTTTGTACGACAGTGTTTTGTCTATTGTTAATCTTCTTGGAGTGTGCTGTATGTAAGATGTTTTGGTGGTAGGACTTCTCTGGAAAAAGAATTTTTTTCTATAGATTTTCATGTGGACACATTATTTTGCAGCCTTGTATGCCTTGTTATTTTTGGTATACTTTCTGTTATGTAATTGAGTATGAAATGTTGCTTATTATATCCCCGATGAGAAATATCTTTTTTTTTTTTTACATTTGTTAAAGGATATGGTAGTTGTGCTGTCTAACAAGTAATGTACACAGAGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTC</genome_strand>
        <mrna_strand>TTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304558" ref_strand="+" ref_description="SGN-E304558 [cLEX-11-D21]">
      <seq>ctaaaacaaggggtagatataacttactttttggattgacgtctggtgggccttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17144" stop="19215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17444" g_stop="17520" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="218" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="296" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18837" g_stop="18915" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="375" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E304558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17444" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAAT</genome_strand>
        <mrna_strand>CTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709647" ref_strand="+" ref_description="SGN-E709647 [FA52CG06]">
      <seq>cgcttataacttcaacggaactcagaagtggcttcgaagttttgaccaacgcctacgggagagtatcgactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtgaagcctccatcattcgaagtgtcaagcttgttgctgaaagtgtagcaagacatatatacagccaggaaggaaaaggcacaaatatatttgcagacgatggtagtttagctgtcaatccttcctatgtacggtcctggctggatcttttgtctactacctctcgagtggcaccttttctttcaaagagtgacccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcatacttgataacacttttcagttttctcgttatcaccaccaggggtcttgacgatcttatcagtctattccgacgtcctccatcccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17193" stop="22056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17493" g_stop="17520" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17609" g_stop="17749" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="169" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="247" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="360" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19028" g_stop="19088" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="421" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20116" g_stop="20283" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="589" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="691" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="781" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21711" g_stop="21756" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="827" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E709647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17493" e_stop="17520"/>
          <exon e_start="17609" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19088"/>
          <exon e_start="20116" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="21756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTATAACTTCAACGGAACTCAGAAGGTGCACTACTCCTTCCTGAGCATTTTCTATGCATAAGTTGCAGTATATCTTGCTGTGTCTTTTCAATCTGTAGTTTCTTTCTCTTCAGTGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCAGTAAGTATCTACATCTTTGCCGCCAAACCTGTTCCAAACATGATGAAATAATAATGATAGAAATCTGATTTTATTAACCATCAAACAACCAACCTTCAAGTGACATTTTCTTCTTTTTGAGAAATAGACAACTGTGACCGAACTGTTTTAAATTGAAAAATAATAAGGGGAGGCTTCTTTGGCCTCTCATGGGAACTTTTATGTGTGTCACTTCTATGACTTTCTCTTTTTGTTAAGATATTCATTGTGTTTAATGCTTTGCATGCATACAGTTTTATACATAATCAACATAAACCTCATAATTTAATTGACATAAACAAGATAGTTTAGTGAACCATATCTACATCGTCATTCCATGACTTCATTCAATTGACAAATTTACTTTCATTTGAAGGTCTCTTCATGTTTCCACAAGAACATTAAAGCTCTGGTCAATTCCTGGAAGTAGTTTTTTTAGCTCATAAATTAATTATATGCTATTTTATTGTTGTTGCACCTTCTCTTTAAATTAGTCAGATGAACAATACTAGAATTTTACATGATTTTGTTGAAGCATAACTGTTAAAGATCCTTAGGATGAGGATAAATCTAACAATTTCAGGATGTATGTATAGAACTACATGCCATATTAGATGGGCATCTTACTAAAAGTATCTATGATAAATATGGCCTTGGAAGTTCAAAACAAGTTTTGAAGATCAAGAGTTAATATGGAGTACAACGCTCCGTGTGCCTTTCTCACTGTTTGTACGACAGTGTTTTGTCTATTGTTAATCTTCTTGGAGTGTGCTGTATGTAAGATGTTTTGGTGGTAGGACTTCTCTGGAAAAAGAATTTTTTTCTATAGATTTTCATGTGGACACATTATTTTGCAGCCTTGTATGCCTTGTTATTTTTGGTATACTTTCTGTTATGTAATTGAGTATGAAATGTTGCTTATTATATCCCCGATGAGAAATATCTTTTTTTTTTTTTACATTTGTTAAAGGATATGGTAGTTGTGCTGTCTAACAAGTAATGTACACAGAGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGA</genome_strand>
        <mrna_strand>CGCTTATAACTTCAACGGAACTCAGAAG........................................................................................TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699633" ref_strand="+" ref_description="SGN-E699633 [FA10DA09]">
      <seq>cgcatttactatgccatttgcttgaatagtcttggctccttgggcaatgagttacatcttcatgtttctaaacctcctgaaaacacatacatacaacaaatatttcagggtttctccagtgtagcagaagaatcggggcttcaagttggtcttaagcacaaaaaaataaacatctccagtcctcgagtagcctgggagcatgagcagttttcaaggctgcgagtcactgcagcaacaatttctgagctttctactgcacctgaattgttagaaggcactggaagtttgtctgataacagacgttctgttagtgaaccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="17343" stop="19349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17642" g_stop="17749" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17846" g_stop="17923" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="186" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18837" g_stop="18949" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="299" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19028" g_stop="19049" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="321" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E699633" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17642" e_stop="17749"/>
          <exon e_start="17846" e_stop="17923"/>
          <exon e_start="18837" e_stop="18949"/>
          <exon e_start="19028" e_stop="19049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAGGTATGGATTATTGCATCAACTGAAAGAATCTTGGAGTATTTCAATTTTTGTTACTTCTACCACAATCCTTTCTAGTCTAAAAGTCTCTGTTTGTAGGGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGAGTAAGCACACATCTCTTCTTATCTATTGGGTCAGACCTGTTCTTTGACTTCATTTATATTCAGATCCTTGGGCCAGCTTTAGAGCCTCAGAAATATCTTTGGGAAAAACGATATTTGGTGGCATTGGGGACTGTTTTCTGATGTTGTGATGGAATTTCTGTTTTCATGTCGAAGTAAAAAAATTAAATGTTGTTTTTTGTGTGAAATTGACTGCTGCAAAGTTGGAGAAATTATTCCTCTTTCCCCTGCATTAAACATGGATCTAACTTAAGCAGATTATTTTTGTGAAAACATACAGTTTGCCATTCTATTTGATCAAATTTGCTTACTATTTTCCTATTTAACCAATTTGACAATTTTTGCCATGGTGCAACTCCTTGTTAGTGTGTATGACATAGTACTCTGCTAGTTGTGGTTGGGTTTGTGCTTGGTTACATTTCTGGTGAGATTTGTAACAAGAGCAATGGTACTTAAAAAAATGAGATTATGTCAGTGGCAGAATCTGTCTGGTTATAACCATAGAGTGTTTTCTGGTTTTGGGTTTTAGTAGTCAGTTATATTAAACTGGTGATTTAGTGACAATCTCAATGTTCTGGCATCTGAGTATTCTTTTTCTCCTTCAAACATCTTCTCCTTGGCTGCTATCCCCCCAGGAACTGTTTATTCAAACTTCTATTTAGCATTCTCTCTTGTGAAGGAGGAAGCTTTCCATCTGATCTTATGTTGGGGTAGGGTTGAGATTTTCCCAGCTCATTTGTAGCTATATTGAATAGTATTAACACTGATTGAGCACTAAGTTATTGAGCTTGGTTTTGTAGTTGAATATCAGTTGCTCCTGCCATTTTGACTTGTCTTATTTCCTTAGAAGGCCATGTGTAATAGTTTCTGTGCTAAAGCTACTAAAATAATGTAGGTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAGGTTAGTACTGAACTCTATATCCTATTTTCAAAATTCTTTTGATCGCAATCAGCTGAAATCCTTGTTTTCTGTTCTCAGACGTTCTGTTAGTGAAGCCTCC</genome_strand>
        <mrna_strand>CGCATTTACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG................................................................................................GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG..............................................................................ACGTTCTGTTAGTGAACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711708" ref_strand="+" ref_description="SGN-E711708 [FB02DA05]">
      <seq>cgattaaaagtgtcaagcttgttgctgaaagtgtagcaagacctatatacagccaggaaggaaaaggcacaaatatatttgcagacgatggtagtttagctgtcaatccttcctatgtacggtcctggctggatcttttgtctactacctctcgagtggcaccttttctttcaaagagtgacccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcatacttgataacacttttcagttttctcgttatcaccaccaggggtcttgacgatcttatcagtctattccgacgtcctccatcccggaaagtgaaagctgtgtgatttcttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatctgtagtttaacgtgtcgttatttagaagctttcgacgaatttccatgggagaaactccacatattttactttggtggtgcgactacatgcatagttataaattttttgcttagttacaaatgtaatttccataacatgctacttagagatgttaacttcgagcttcatattaatttgccggcagttatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="18753" stop="22332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19051" g_stop="19088" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027">
            <donor d_prob="0.920" d_score="0.00"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20116" g_stop="20283" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="206" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="308" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="398" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21711" g_stop="22020" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="708" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="718" polyA_stop="731"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E711708" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19051" e_stop="19088"/>
          <exon e_start="20116" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="22020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCAGTAAGTATCTACATCTTTGCCGCCAAACCTGTTCCAAACATGATGAAATAATAATGATAGAAATCTGATTTTATTAACCATCAAACAACCAACCTTCAAGTGACATTTTCTTCTTTTTGAGAAATAGACAACTGTGACCGAACTGTTTTAAATTGAAAAATAATAAGGGGAGGCTTCTTTGGCCTCTCATGGGAACTTTTATGTGTGTCACTTCTATGACTTTCTCTTTTTGTTAAGATATTCATTGTGTTTAATGCTTTGCATGCATACAGTTTTATACATAATCAACATAAACCTCATAATTTAATTGACATAAACAAGATAGTTTAGTGAACCATATCTACATCGTCATTCCATGACTTCATTCAATTGACAAATTTACTTTCATTTGAAGGTCTCTTCATGTTTCCACAAGAACATTAAAGCTCTGGTCAATTCCTGGAAGTAGTTTTTTTAGCTCATAAATTAATTATATGCTATTTTATTGTTGTTGCACCTTCTCTTTAAATTAGTCAGATGAACAATACTAGAATTTTACATGATTTTGTTGAAGCATAACTGTTAAAGATCCTTAGGATGAGGATAAATCTAACAATTTCAGGATGTATGTATAGAACTACATGCCATATTAGATGGGCATCTTACTAAAAGTATCTATGATAAATATGGCCTTGGAAGTTCAAAACAAGTTTTGAAGATCAAGAGTTAATATGGAGTACAACGCTCCGTGTGCCTTTCTCACTGTTTGTACGACAGTGTTTTGTCTATTGTTAATCTTCTTGGAGTGTGCTGTATGTAAGATGTTTTGGTGGTAGGACTTCTCTGGAAAAAGAATTTTTTTCTATAGATTTTCATGTGGACACATTATTTTGCAGCCTTGTATGCCTTGTTATTTTTGGTATACTTTCTGTTATGTAATTGAGTATGAAATGTTGCTTATTATATCCCCGATGAGAAATATCTTTTTTTTTTTTTACATTTGTTAAAGGATATGGTAGTTGTGCTGTCTAACAAGTAATGTACACAGAGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCG</genome_strand>
        <mrna_strand>CGATTAAAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375861" ref_strand="+" ref_description="SGN-E375861 [TUS-15-E8](-)">
      <seq>acaaatatatttgcagacgatggtagtttagctgtcaatccttcctatgtacggtcctggctggatcttttgtctactacctctcgagtggcaccttttctttcaaagagtgacccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcatacttgataacacttttcagttttctcgttatcaccaccaggggtcttgacgatcttatcagtctattccgacgtcctccatcccggaaagtgaaagctgtgtgatttcttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatctgtagtttaacgtgtcgttatttagaagctttcgacgaatttccatgggagaaactccacatattttactttggtggtgcgactacatgcatagttataaattttttgcttagttacaaatgtaatttccataacatgctacttagagatgttaacttcgagcttcatattaatttgccggcagttatcacattgatttgcagacagttaaccattgaaactatcgaaaaataagttgtttccagattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="19846" stop="22394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20146" g_stop="20283" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="240" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21711" g_stop="22100" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="720" r_length="390" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E375861" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20146" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="22100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAAT</genome_strand>
        <mrna_strand>ACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368114" ref_strand="+" ref_description="SGN-E368114 [TUS-22-O4]">
      <seq>tcgagtggcaccttttctttcaaagagtgacccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcatacttgataacacttttcagttttctcgttatcaccaccaggggtcttgacgatcttatcagtctattccgacgtcctccatcccggaaagtgaaagctgtgtgatttcttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatctgtagtttaacgtgtcgttatttagaagctttcgacgaatttccatgggagaaactccacatattttactttggtggtgcgactacatgcatagttataaattttttgcttagttacaaataatttccataacatgctacttagagatgttaacttcgagcttcatattaatttgccggcagttatcacattgatttgcagacagttaaccattgaaactatcgaaaaataagttgtttccagattataacatgcaatttgtattattaattaatatcaagtaaagacacttttagttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="19929" stop="57557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20229" g_stop="20283" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="157" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="247" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21711" g_stop="22140" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="675" r_length="428" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22141" i_stop="24479" i_length="2339">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24480" g_stop="24504" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="700" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24505" i_stop="25493" i_length="989">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.252" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25494" g_stop="25501" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="708" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E368114" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20229" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="22140"/>
          <exon e_start="24480" e_stop="24504"/>
          <exon e_start="25494" e_stop="25501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTTATGTTCTTTACTACGTTTTCAGCCCAGTAGCACGTCTACGTACCGTTTTAAACATATATAGATACGTATCACTCTGATCATATGTGCATGATACAACAGAAATAGTCAAAAACAAATTTGGTAAATTCAAGAAAAGGTTATTTATTGAGGAGGACCTGTCTGTAGAACACCAAGTGAAACAGAAATTATTTGAAGATGCAAACATTTATCAGTCCCTACTACCAGAAGTAGAAGCAGAGAAGAAAGGAAGTCAAGCTCCAACGCCACAACCCGAAACACACCAGTGGGTAGATTTAAGGCAGAAAATAACGCGTTCAAGGTTTCAGCGAGATAAGATACAGTCATACTAGTACTAGACAGAAAGAAGAAACTATTATCTCATCATTCAGTTGCTTTTCCTTTACGTCTGCTGCTATTGCTGGTTTCGATGAGATAACATACCATGGAATCCACATCATCCCCAAATATGCTATAAGCCTCTATCACTCGTGCATAGCTAAATCCCATCGACAGCATAATCTGGATGCAGTCGCTAAGGACCTCTCGGATGCCTTCCTGATGTGTGTCACTTCCTGACGACCCTGCGATTCAACAGAAAAAAGTTAGCAGGATCAAGATAGTTGAAGTCTTGCAACCACAACAATAGCTGATTTTATATCAATAGAAGGACAAACAAACAAACTAGTCTAGTATTGTTAGTGAAGGCAAAATCCACATCGAAAGTCAGCATGAACTTACTAGCTCCAGATGATGATGGTTCAGCATTAGAAGTGGAAGTTTCTCGACAACCAAGCTGCTGTCTGAACTTGTCATTGGCAACATACTCAGCCCTAGAAGCTTCCACTACCATGCGTTCAATCTCCTTTTCAGTGAGCTCAAGATCTGAATAAAAGCGTCCTTCAGCCAGAAGAGCCTGAATTGAACCGTTTTAGCATATATAGTCAAAACAACATCAATGTCCCGTTTGTTATCAAGGTGATTAAGACCAAAATGAATTTTGAGGTGCTTACATTATCAATTTGCTGATCCTGTTGAGCTTTTATTGCTGCTTTGACCTGATCCTTATCAACGTTCCTCTATACAATAAAGAAGAAAAGATAAAGAGACGATAAATGGAACCAGAGCTACTAGATGCTACAGATGATGATCTACAAACTAGTTAAATATTAGCATCACCCACATAATTCGACACCCAAGAGCTGTAAGCACACAGCCAATGAAGTTTATCCAATACGACAGCTATAGAAAGTCAACATCATGTCTGTTCGTAGATTAGAAATTTTACCCCTTGTAGAGAGCTAAACCCAAGGCCAGCACCAACAGTTAGTCGACGTGGATCAACAAGTGAATTGTAATGATTTCCATGATGAAAACTGAGTCGAACAGGAGGGCTGTCTGTATTATAACTTCCGTGGAATGTATTGATTGGTTCTGCATTAGTGAATTCCAGAAATTAAACTCTGGCAGCACAAATATAGAATCCACAGAGACTGGCCAGTTGCGATAAAATCATTACTGGTGTCTAAAAAAGAATAACAAAAGAAGGGTACCTGTGCTATAAGAATATATATGAATAGGGCGATTATACATTTCAGATAAAGCTTGAATCTCCACATTGTTGCCATAAACCTATCAAGCCAATAGAGACCATTAGTCTGATTGCCACATAAAAAGGATAAAGGAACAAAGACAGACATGCCACAACATATATTTCAAAAACACAAGCAAAACAGGAGCCACAGATTCTCAACAGAGGACATTCCTATTCAATGTTATAGCAAATTATTTAAAAATTGTACTAGTCTGACAGAATCAACAAATAAGACAGGGAATACTAGTGAACTGCAATGTGACTTACTTTGTCTCTCCTTTTTCTCTTGCAATAGGAAGTGAAACCTTCAGTTATAAACTGAGAGAAGTGATCTCTTTCCCGCTCCTATTACAAAGAAGCACATTGAGAAATAAATAATGAGAGGATTGGTAAAGGTTTTGCAGAAAGATAGTGATGATTATGAGATTTTATATCAACCTCCCAAACATTGAAAACACTCCTAGTAGATATGATGTAAGTGACGCCAGCACAACGTACACATGGATGCCTTTACAGACAGTAGCGTTCTTATATTCTCTAGGTTAAGGACTTGGATGCCAAGGGAACACGGGAAACAATTGATGAAGCATCAGAGGGAAGTCTACTTAGATTATTTTTTTGAGGAAGGATTGCCATACTGAGTTAGATTCTCATGAAGCAGACAAGATGAACTGAAAAACCAAAGGAAGAACTAATGCAGACATACCTATAAACTTTCTCCCAATTCTCAACCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAATTAAAAAAAGGTGTAGACATACAGAACCTCACTTAACCCATGAAACATTAGTAGCTGTTATTTGTCTAGTTAAATTACACAAACATGAGCACACTAAGACAGAAGGTAAATTTACCCAAGGTTGTGTAGCAAGGTAATTGTTGCAAGAAAACAAAAAATTGGCAAGTAAACCAAGTAATTATTACTTCTAAAAAGGGCAAGGTAATTGCTGCAAACCTTACAAAGTATAACATCTTCTGAGAGCTGATCATCATTGATTTCAGAGAATGCTAGAGATGATTAATAAATAGAAGCATGCTACCTGAAGATAAACAGTAGCTCTTTCGCCAAATAACAGAATTTATTTGTATAGACATCCAGGAATTTTGATGTGTCCCAAATTAACGTGATATTTGAAAAACACAAACCACCGGTAACCTAAAAATACTTTGGATAACGTTGACATTACAAATCAGACAAACTCATTTCTAATGTCTCTATTGTCAACTATGCCCAGTAATAAGCTAAAATAAGCATTGTCCACATTAACCAACTCTTGTATTCTATAGGATGAAATTCTTCTCTCTATTGAGTTACACATGTTATATTCTTATGGGAGACATAGGTGTTCTTTTTGTATGAGAGGGAAGATATTTTCCAGAAAATGACTCTATACGCTTATTTTCCTTCACAGCTATCTCAACTCCCAACTTCCTGTCACTGCCCCAATCAATAACCAATGGGTGGAAAGTACTGCATTGGTCAAGTCTTCAATGGTTGATGCCAGGCACTATTGGGGAAGTATTATTTAACTGGACCTTTAGAGGGGGAAGAGTAATAGATTGGATCGTACAAAAAGTACATCAACTAACTATCTGCACAAACCCTGTTAGACGTTTTAGATTAAGTGCATAGGTAGAACAGGTTCACTTGTTTTGTTATCCTTTTTGCTGGTAGCAACCCACCATGGTCTTTGTGTTGTTTTTGTTCATTTATAACACTACTTGATTTTTTAAAAAGAAAAATAA</genome_strand>
        <mrna_strand>TCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAA--TAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240974" ref_strand="+" ref_description="SGN-E240974 [cLED-24-H15]">
      <seq>tcgagtggcaccttttctttcaaagagtgacccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcatacttgataacacttttcagttttctcgttatcaccaccaggggtcttgacgatcttatcagtctattccgacgtcctccatcccggaaagtgaaagctgtgtgatttcttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatctgtagtttaacgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="19929" stop="22156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20229" g_stop="20283" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="157" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="247" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21711" g_stop="21856" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="393" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E240974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20229" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="21856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTC</genome_strand>
        <mrna_strand>TCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368113" ref_strand="+" ref_description="SGN-E368113 [TUS-22-O4](-)">
      <seq>cccacttatcatggcactgcaaaaggaattagctgatcatactgctgaggtgaatgtacagcatgagacgctagacgagactttcactttttatgattcaattagtggcagattacatgtatatcaggttgcgagcgtgacttttgacttgctcttgctgttggttcttggatcaaacttgataacacttttcagttttttcgttatcaccaccaggggttttgacgattttatcagtttattccgacgtcctccatcccggaaagtgaaaactgtgtgattttttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatttgtagtttaacgggtcgttatttaaaagctttcgacgaatttccatgggagaaactccacatattttactttggtggtgggactacatgcatagttataaattttttggttagttacaaataatttccataacatgctacttaaaaatgttaacttcgagcttcatattaatttgccggcagttatcacattgatttgcagacagttaaccattgaaactatcgaaaaataagttgtttccagattataacatgcaatttgtatttttaattaatatcaagtaaagacacttttagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="19959" stop="57557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20259" g_stop="20283" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21119" g_stop="21220" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="127" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21451" g_stop="21540" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="217" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="0.96"/>
            <acceptor a_prob="0.726" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21711" g_stop="22142" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="647" r_length="430" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22143" i_stop="24479" i_length="2337">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24480" g_stop="24504" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="672" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24505" i_stop="25493" i_length="989">
            <donor d_prob="0.922" d_score="0.00"/>
            <acceptor a_prob="0.252" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25494" g_stop="25501" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="680" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E368113" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20259" e_stop="20283"/>
          <exon e_start="21119" e_stop="21220"/>
          <exon e_start="21451" e_stop="21540"/>
          <exon e_start="21711" e_stop="22142"/>
          <exon e_start="24480" e_stop="24504"/>
          <exon e_start="25494" e_stop="25501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTTATCATGGCACTGCAAAAGGTACTACCATCCTTTCTTTGAAATCTTTTAAATCATGTTAACATATAGAGACATGTCGATGCACATGCATCACTATCACTAATGCTCGTGCTGGTCATTCTACACTATTAGATAATGTGTCTCTTGTTATCCTTTTTCCTTTCCTTGATAGTATAAATAATTAGCCTCTATCCCCTGTTCTCGCCCCCTTCTGTGACACATTAACTCCGAAAAAGGATGTCTGCCTTTCAAAAACAATTAGTAAATTTTAATAGGTTGTCACCAATGAACCCACAAAATTTGAGCTCAAACTGAGTCTGTCACACATATTTCGTAATATTTATGGACTAATACCCATAAAAAATGAGACAATTCTGGAAATTCCTATTTCATGACACAGAAACTCCAAAAAAGCGATGTCCGTCCTTCAAAAACAATGAGTATCATTTAATAGGTCGTCACCAGTGGACCCACAAAATTTGAGCTCATACAAAGTCAATCACTTATTCTGGAGTATTCGTGGACTAACACACACGAAAATAATGAGTATCAATTAATAGGTCGTGCAACAATGGACCCACAATATTTGAATTCAAACAGAGTAGGTGACACATTCCGGAAAATTGATAAACTTAACATATGAAAAGATCAACATAATCCTGAATTCTTGTTTGTTGACACATAAACACCAAAAAAATGATGTCCACCTTTCGTAAGTGTTAGTCCATAAATTTTCATTTTTAAGATCGCTTAACGAAAAAATAACTCTGGCATTGTCATATAGCAATTTGAGCTCTTTGTGATAGCCTTTCCTTCCCTCCCTCGTTTTGATCACATGTGCTTTATACTTCTGCAGGAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAGGTGTGTAAGACCATTCCCTCTTCCGTCTCCTTGCCACTACTACCTGTCCAATACTCATGTGTGTCTGCTAATTACAATACATTTCATCATTGATCATACTTGATTTGTTTAGGGTCCAATCGTAATTCTAATACATAGGCCTATCTTGAGTCTCACTTGCCTAACTTAGCGTTGGCAACTATTTTCTATAGCTAATGAGCTGTACAAAATATATTTTCTTTTTACTGTAGGTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTTATGTTCTTTACTACGTTTTCAGCCCAGTAGCACGTCTACGTACCGTTTTAAACATATATAGATACGTATCACTCTGATCATATGTGCATGATACAACAGAAATAGTCAAAAACAAATTTGGTAAATTCAAGAAAAGGTTATTTATTGAGGAGGACCTGTCTGTAGAACACCAAGTGAAACAGAAATTATTTGAAGATGCAAACATTTATCAGTCCCTACTACCAGAAGTAGAAGCAGAGAAGAAAGGAAGTCAAGCTCCAACGCCACAACCCGAAACACACCAGTGGGTAGATTTAAGGCAGAAAATAACGCGTTCAAGGTTTCAGCGAGATAAGATACAGTCATACTAGTACTAGACAGAAAGAAGAAACTATTATCTCATCATTCAGTTGCTTTTCCTTTACGTCTGCTGCTATTGCTGGTTTCGATGAGATAACATACCATGGAATCCACATCATCCCCAAATATGCTATAAGCCTCTATCACTCGTGCATAGCTAAATCCCATCGACAGCATAATCTGGATGCAGTCGCTAAGGACCTCTCGGATGCCTTCCTGATGTGTGTCACTTCCTGACGACCCTGCGATTCAACAGAAAAAAGTTAGCAGGATCAAGATAGTTGAAGTCTTGCAACCACAACAATAGCTGATTTTATATCAATAGAAGGACAAACAAACAAACTAGTCTAGTATTGTTAGTGAAGGCAAAATCCACATCGAAAGTCAGCATGAACTTACTAGCTCCAGATGATGATGGTTCAGCATTAGAAGTGGAAGTTTCTCGACAACCAAGCTGCTGTCTGAACTTGTCATTGGCAACATACTCAGCCCTAGAAGCTTCCACTACCATGCGTTCAATCTCCTTTTCAGTGAGCTCAAGATCTGAATAAAAGCGTCCTTCAGCCAGAAGAGCCTGAATTGAACCGTTTTAGCATATATAGTCAAAACAACATCAATGTCCCGTTTGTTATCAAGGTGATTAAGACCAAAATGAATTTTGAGGTGCTTACATTATCAATTTGCTGATCCTGTTGAGCTTTTATTGCTGCTTTGACCTGATCCTTATCAACGTTCCTCTATACAATAAAGAAGAAAAGATAAAGAGACGATAAATGGAACCAGAGCTACTAGATGCTACAGATGATGATCTACAAACTAGTTAAATATTAGCATCACCCACATAATTCGACACCCAAGAGCTGTAAGCACACAGCCAATGAAGTTTATCCAATACGACAGCTATAGAAAGTCAACATCATGTCTGTTCGTAGATTAGAAATTTTACCCCTTGTAGAGAGCTAAACCCAAGGCCAGCACCAACAGTTAGTCGACGTGGATCAACAAGTGAATTGTAATGATTTCCATGATGAAAACTGAGTCGAACAGGAGGGCTGTCTGTATTATAACTTCCGTGGAATGTATTGATTGGTTCTGCATTAGTGAATTCCAGAAATTAAACTCTGGCAGCACAAATATAGAATCCACAGAGACTGGCCAGTTGCGATAAAATCATTACTGGTGTCTAAAAAAGAATAACAAAAGAAGGGTACCTGTGCTATAAGAATATATATGAATAGGGCGATTATACATTTCAGATAAAGCTTGAATCTCCACATTGTTGCCATAAACCTATCAAGCCAATAGAGACCATTAGTCTGATTGCCACATAAAAAGGATAAAGGAACAAAGACAGACATGCCACAACATATATTTCAAAAACACAAGCAAAACAGGAGCCACAGATTCTCAACAGAGGACATTCCTATTCAATGTTATAGCAAATTATTTAAAAATTGTACTAGTCTGACAGAATCAACAAATAAGACAGGGAATACTAGTGAACTGCAATGTGACTTACTTTGTCTCTCCTTTTTCTCTTGCAATAGGAAGTGAAACCTTCAGTTATAAACTGAGAGAAGTGATCTCTTTCCCGCTCCTATTACAAAGAAGCACATTGAGAAATAAATAATGAGAGGATTGGTAAAGGTTTTGCAGAAAGATAGTGATGATTATGAGATTTTATATCAACCTCCCAAACATTGAAAACACTCCTAGTAGATATGATGTAAGTGACGCCAGCACAACGTACACATGGATGCCTTTACAGACAGTAGCGTTCTTATATTCTCTAGGTTAAGGACTTGGATGCCAAGGGAACACGGGAAACAATTGATGAAGCATCAGAGGGAAGTCTACTTAGATTATTTTTTTGAGGAAGGATTGCCATACTGAGTTAGATTCTCATGAAGCAGACAAGATGAACTGAAAAACCAAAGGAAGAACTAATGCAGACATACCTATAAACTTTCTCCCAATTCTCAACCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAATTAAAAAAAGGTGTAGACATACAGAACCTCACTTAACCCATGAAACATTAGTAGCTGTTATTTGTCTAGTTAAATTACACAAACATGAGCACACTAAGACAGAAGGTAAATTTACCCAAGGTTGTGTAGCAAGGTAATTGTTGCAAGAAAACAAAAAATTGGCAAGTAAACCAAGTAATTATTACTTCTAAAAAGGGCAAGGTAATTGCTGCAAACCTTACAAAGTATAACATCTTCTGAGAGCTGATCATCATTGATTTCAGAGAATGCTAGAGATGATTAATAAATAGAAGCATGCTACCTGAAGATAAACAGTAGCTCTTTCGCCAAATAACAGAATTTATTTGTATAGACATCCAGGAATTTTGATGTGTCCCAAATTAACGTGATATTTGAAAAACACAAACCACCGGTAACCTAAAAATACTTTGGATAACGTTGACATTACAAATCAGACAAACTCATTTCTAATGTCTCTATTGTCAACTATGCCCAGTAATAAGCTAAAATAAGCATTGTCCACATTAACCAACTCTTGTATTCTATAGGATGAAATTCTTCTCTCTATTGAGTTACACATGTTATATTCTTATGGGAGACATAGGTGTTCTTTTTGTATGAGAGGGAAGATATTTTCCAGAAAATGACTCTATACGCTTATTTTCCTTCACAGCTATCTCAACTCCCAACTTCCTGTCACTGCCCCAATCAATAACCAATGGGTGGAAAGTACTGCATTGGTCAAGTCTTCAATGGTTGATGCCAGGCACTATTGGGGAAGTATTATTTAACTGGACCTTTAGAGGGGGAAGAGTAATAGATTGGATCGTACAAAAAGTACATCAACTAACTATCTGCACAAACCCTGTTAGACGTTTTAGATTAAGTGCATAGGTAGAACAGGTTCACTTGTTTTGTTATCCTTTTTGCTGGTAGCAACCCACCATGGTCTTTGTGTTGTTTTTGTTCATTTATAACACTACTTGATTTTTTAAAAAGAAAAATAA</genome_strand>
        <mrna_strand>CCCACTTATCATGGCACTGCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG......................................................................................................................................................................................................................................GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCAAACTTGATAACACTTTTCAGTTTTTTCGTTATCACCACCAGG..........................................................................................................................................................................GGTTTTGACGATTTTATCAGTTTATTCCGACGTCCTCCATCCCGGAAAGTGAAAACTGTGTGATTTTTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATTTGTAGTTTAACGGGTCGTTATTTAAAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGGGACTACATGCATAGTTATAAATTTTTTGGTTAGTTACAAA--TAATTTCCATAACATGCTACTTAAAAATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTTTTAATTAATATCAAGTAAAGACACTTTTAGTTTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233819" ref_strand="+" ref_description="SGN-E233819 [cLEL-8-A17](-)">
      <seq>ggggtcttgacgatcttatcagtctattccgacgtcctccatcccggaaagtgaaagctgtgtgatttcttgaggtggggatatgttcacacttgaggtctccagtaaactatgaattgctcaccatcgatctgtagtttaacgtgtcgttatttagaagctttcgacgaatttccatgggagaaactccacatattttactttggtggtgcgactacatgcatagttataaattttttgcttagttacaaatgtaatttccataacatgctacttagaaatgttaacttcgagcttcatattaatttgccggcagttatcacattgatttgcagacagttagccattgaaactatcgcaaaataagttgtttccagattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="21410" stop="57547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21539" g_stop="21540" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21711" g_stop="22092" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="384" r_length="382" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22093" i_stop="22239" i_length="147">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.239" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22240" g_stop="22256" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="401" r_length="17" r_score="0.706"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E233819" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21539" e_stop="21540"/>
          <exon e_start="21711" e_stop="22092"/>
          <exon e_start="22240" e_stop="22256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTATGTCTTTCTGGTTTGTTTAGCTCTCAATGCCTTCCTTCTGCTCTGCAAATTTCATTTTGTTGCTTATACTACTATAGCAACTACTACTGCACCTCCATACTAATTTGGATCGGCTATGGAAACAAAAAGATTGAAAAACTGAATGTGACTCTGGTATTGCTCAACAGGGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTTATGTTCTTTACTACGTTTTCAGCCCAGTAGCACGTCTACGTACCGTTTTAAACATATATAGATACGTATCACTCTGATCATATGTGCATGATACAACAGAAATAGTCAAAAACAAA</genome_strand>
        <mrna_strand>GG..........................................................................................................................................................................GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAAATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAGCCATTGAAACTATCGCAAAATAAGTTGTTTCCAGATTAAAA...................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314270" ref_strand="+" ref_description="SGN-E314270 [cTOA-21-L24]">
      <seq>agagacaaagtttatggcaacaatgtggagattcaagctttatctgaaatgtataatcgccctattcatatatattcttatagcacagaaccaatcaatacattccacggaagttataatacagacagccctcctgttcgactcagttttcatcatggaaatcattacaattcacttgttgatccacgtcgactaactgttggtgctggccttgggtttagctctctacaagggaggaacgttgataaggatcaggtcaaagcagcaataaaagctcaacaggatcagcaaattgataatgctcttctggctgaaggacgcttttattcagatcttgagctcactgaaaaggagattgaacgcatggtagtggaagcttctagggctgagtatgttgccaatgacaagttcagacagcagcttggttgtcgagaaacttccacttctaatgctgaaccatcatcatctggagctaggtcgtcaggaagtgacacacatcaggaaggcatccgagaggtccttagcgactgcatccagattatgctgtcgatgggatttagctatgcacgagtgatagaggcttatagcatatttggggatgatgtggattccatggtatgttatctcatcgaaaccagcaatagcagcagacgtaaaggaaaaagcactgaatgatgagataatagtttcttctttctgtctagtactagtatgactgtatcttatctcgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="24071" stop="22162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24007" g_stop="23999" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23998" i_stop="23770" i_length="229">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23769" g_stop="23691" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="88" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23690" i_stop="23572" i_length="119">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23571" g_stop="23426" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="234" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23425" i_stop="23217" i_length="209">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23216" g_stop="23151" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="300" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23150" i_stop="23054" i_length="97">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23053" g_stop="22879" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="475" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22878" i_stop="22722" i_length="157">
            <donor d_prob="0.359" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22721" g_stop="22462" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="735" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E314270" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24007" e_stop="23999"/>
          <exon e_start="23769" e_stop="23691"/>
          <exon e_start="23571" e_stop="23426"/>
          <exon e_start="23216" e_stop="23151"/>
          <exon e_start="23053" e_stop="22879"/>
          <exon e_start="22721" e_stop="22462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACAAAGTAAGTCACATTGCAGTTCACTAGTATTCCCTGTCTTATTTGTTGATTCTGTCAGACTAGTACAATTTTTAAATAATTTGCTATAACATTGAATAGGAATGTCCTCTGTTGAGAATCTGTGGCTCCTGTTTTGCTTGTGTTTTTGAAATATATGTTGTGGCATGTCTGTCTTTGTTCCTTTATCCTTTTTATGTGGCAATCAGACTAATGGTCTCTATTGGCTTGATAGGTTTATGGCAACAATGTGGAGATTCAAGCTTTATCTGAAATGTATAATCGCCCTATTCATATATATTCTTATAGCACAGGTACCCTTCTTTTGTTATTCTTTTTTAGACACCAGTAATGATTTTATCGCAACTGGCCAGTCTCTGTGGATTCTATATTTGTGCTGCCAGAGTTTAATTTCTGGAATTCACTAATGCAGAACCAATCAATACATTCCACGGAAGTTATAATACAGACAGCCCTCCTGTTCGACTCAGTTTTCATCATGGAAATCATTACAATTCACTTGTTGATCCACGTCGACTAACTGTTGGTGCTGGCCTTGGGTTTAGCTCTCTACAAGGGGTAAAATTTCTAATCTACGAACAGACATGATGTTGACTTTCTATAGCTGTCGTATTGGATAAACTTCATTGGCTGTGTGCTTACAGCTCTTGGGTGTCGAATTATGTGGGTGATGCTAATATTTAACTAGTTTGTAGATCATCATCTGTAGCATCTAGTAGCTCTGGTTCCATTTATCGTCTCTTTATCTTTTCTTCTTTATTGTATAGAGGAACGTTGATAAGGATCAGGTCAAAGCAGCAATAAAAGCTCAACAGGATCAGCAAATTGATAATGTAAGCACCTCAAAATTCATTTTGGTCTTAATCACCTTGATAACAAACGGGACATTGATGTTGTTTTGACTATATATGCTAAAACGGTTCAATTCAGGCTCTTCTGGCTGAAGGACGCTTTTATTCAGATCTTGAGCTCACTGAAAAGGAGATTGAACGCATGGTAGTGGAAGCTTCTAGGGCTGAGTATGTTGCCAATGACAAGTTCAGACAGCAGCTTGGTTGTCGAGAAACTTCCACTTCTAATGCTGAACCATCATCATCTGGAGCTAGTAAGTTCATGCTGACTTTCGATGTGGATTTTGCCTTCACTAACAATACTAGACTAGTTTGTTTGTTTGTCCTTCTATTGATATAAAATCAGCTATTGTTGTGGTTGCAAGACTTCAACTATCTTGATCCTGCTAACTTTTTTCTGTTGAATCGCAGGGTCGTCAGGAAGTGACACACATCAGGAAGGCATCCGAGAGGTCCTTAGCGACTGCATCCAGATTATGCTGTCGATGGGATTTAGCTATGCACGAGTGATAGAGGCTTATAGCATATTTGGGGATGATGTGGATTCCATGGTATGTTATCTCATCGAAACCAGCAATAGCAGCAGACGTAAAGGAAAAGCAACTGAATGATGAGATAATAGTTTCTTCTTTCTGTCTAGTACTAGTATGACTGTATCTTATCTCGCTGAA</genome_strand>
        <mrna_strand>AGAGACAAA.....................................................................................................................................................................................................................................GTTTATGGCAACAATGTGGAGATTCAAGCTTTATCTGAAATGTATAATCGCCCTATTCATATATATTCTTATAGCACAG.......................................................................................................................AACCAATCAATACATTCCACGGAAGTTATAATACAGACAGCCCTCCTGTTCGACTCAGTTTTCATCATGGAAATCATTACAATTCACTTGTTGATCCACGTCGACTAACTGTTGGTGCTGGCCTTGGGTTTAGCTCTCTACAAGGG.................................................................................................................................................................................................................AGGAACGTTGATAAGGATCAGGTCAAAGCAGCAATAAAAGCTCAACAGGATCAGCAAATTGATAAT.................................................................................................GCTCTTCTGGCTGAAGGACGCTTTTATTCAGATCTTGAGCTCACTGAAAAGGAGATTGAACGCATGGTAGTGGAAGCTTCTAGGGCTGAGTATGTTGCCAATGACAAGTTCAGACAGCAGCTTGGTTGTCGAGAAACTTCCACTTCTAATGCTGAACCATCATCATCTGGAGCTA.............................................................................................................................................................GGTCGTCAGGAAGTGACACACATCAGGAAGGCATCCGAGAGGTCCTTAGCGACTGCATCCAGATTATGCTGTCGATGGGATTTAGCTATGCACGAGTGATAGAGGCTTATAGCATATTTGGGGATGATGTGGATTCCATGGTATGTTATCTCATCGAAACCAGCAATAGCAGCAGACGTAAAGGAAAAAGCACTGAATGATGAGATAATAGTTTCTTCTTTCTGTCTAGTACTAGTATGACTGTATCTTATCTCGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268300" ref_strand="+" ref_description="SGN-E268300 [cLEM-3-K12]">
      <seq>gtttataggtatgtctgcattagttcttcctttggtttttcagttcatcttgtctgcttcatgagaatctaactcagtatggcaatccttcctcaaaaaaataatctaagtagacttccctctgatgcttcatcaattgtttcccgtgttcccttggcatccaagtccttaacctagagaatataagaacgctactgtctgtaaaggcatccatgtgtacgttgtgctggcgtcacttacatcatatctactaggagtgttttcaatgtttgggaggttgatataaaatctcataatcatcactatctttctgcaaaacctttaccaatcctctcattatttatttctcaatgtgcttctttgtaatacgagcgggaaagagatcacttctctcagtttataactgaaggtttcacttcctattgcaagagaaaaaggagagacaaagtttatggcaacaatgtggagattcaagctttatctgaaatgtataatcgccctattcatatatattcttatagcacagaaccaatcaatacattccacggaagttataatacagacagccctcctgttcgactcagttttcatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="24745" stop="23202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24445" g_stop="23999" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23998" i_stop="23770" i_length="229">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23769" g_stop="23691" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="526" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23690" i_stop="23572" i_length="119">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23571" g_stop="23502" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="596" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E268300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24445" e_stop="23999"/>
          <exon e_start="23769" e_stop="23691"/>
          <exon e_start="23571" e_stop="23502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAGGTATGTCTGCATTAGTTCTTCCTTTGGTTTTTCAGTTCATCTTGTCTGCTTCATGAGAATCTAACTCAGTATGGCAATCCTTCCTCAAAAAAATAATCTAAGTAGACTTCCCTCTGATGCTTCATCAATTGTTTCCCGTGTTCCCTTGGCATCCAAGTCCTTAACCTAGAGAATATAAGAACGCTACTGTCTGTAAAGGCATCCATGTGTACGTTGTGCTGGCGTCACTTACATCATATCTACTAGGAGTGTTTTCAATGTTTGGGAGGTTGATATAAAATCTCATAATCATCACTATCTTTCTGCAAAACCTTTACCAATCCTCTCATTATTTATTTCTCAATGTGCTTCTTTGTAATAGGAGCGGGAAAGAGATCACTTCTCTCAGTTTATAACTGAAGGTTTCACTTCCTATTGCAAGAGAAAAAGGAGAGACAAAGTAAGTCACATTGCAGTTCACTAGTATTCCCTGTCTTATTTGTTGATTCTGTCAGACTAGTACAATTTTTAAATAATTTGCTATAACATTGAATAGGAATGTCCTCTGTTGAGAATCTGTGGCTCCTGTTTTGCTTGTGTTTTTGAAATATATGTTGTGGCATGTCTGTCTTTGTTCCTTTATCCTTTTTATGTGGCAATCAGACTAATGGTCTCTATTGGCTTGATAGGTTTATGGCAACAATGTGGAGATTCAAGCTTTATCTGAAATGTATAATCGCCCTATTCATATATATTCTTATAGCACAGGTACCCTTCTTTTGTTATTCTTTTTTAGACACCAGTAATGATTTTATCGCAACTGGCCAGTCTCTGTGGATTCTATATTTGTGCTGCCAGAGTTTAATTTCTGGAATTCACTAATGCAGAACCAATCAATACATTCCACGGAAGTTATAATACAGACAGCCCTCCTGTTCGACTCAGTTTTCATCATGG</genome_strand>
        <mrna_strand>GTTTATAGGTATGTCTGCATTAGTTCTTCCTTTGGTTTTTCAGTTCATCTTGTCTGCTTCATGAGAATCTAACTCAGTATGGCAATCCTTCCTCAAAAAAATAATCTAAGTAGACTTCCCTCTGATGCTTCATCAATTGTTTCCCGTGTTCCCTTGGCATCCAAGTCCTTAACCTAGAGAATATAAGAACGCTACTGTCTGTAAAGGCATCCATGTGTACGTTGTGCTGGCGTCACTTACATCATATCTACTAGGAGTGTTTTCAATGTTTGGGAGGTTGATATAAAATCTCATAATCATCACTATCTTTCTGCAAAACCTTTACCAATCCTCTCATTATTTATTTCTCAATGTGCTTCTTTGTAATACGAGCGGGAAAGAGATCACTTCTCTCAGTTTATAACTGAAGGTTTCACTTCCTATTGCAAGAGAAAAAGGAGAGACAAA.....................................................................................................................................................................................................................................GTTTATGGCAACAATGTGGAGATTCAAGCTTTATCTGAAATGTATAATCGCCCTATTCATATATATTCTTATAGCACAG.......................................................................................................................AACCAATCAATACATTCCACGGAAGTTATAATACAGACAGCCCTCCTGTTCGACTCAGTTTTCATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717959" ref_strand="+" ref_description="SGN-E717959 [FC03AH11]">
      <seq>ttacctagaagtttatttgtacccattttccccatttgttcggaatcttcatgtaataaaccctagctagcttctactagcaggttctggttgctggtgattctaaaatcaaaaattagttcgtgagtataagacaaaagttagctgctgggacaaatcgttcagccaaggtattggtgtgactgccccaaaggccaggaagcgtgacaaattcaaagcaagggctttatttctctaatttcggttgaagaagactacacaaaatgactaggatactggttcagcgcggttctgctggagcttcatcgtcttcatcctcaaatcaaaacaggtcatcaacttcaatccctggttcgtcttcttcttcagctccaacccagccacaggcgtctagtagtagtcaggtattatcagctttgaaagatgatgatttcgtggaagaaatacaagaacaggttgctttagaagagtcgtccgttgcttcttcaaactataagggtgacggtgaattgttggaaagtttgggcagcgaagaaagcaacaatgaagaaaagattgttgacaacgagaagagaaatagtggttttgacagtgaggatttgacaaggaaatgtgatggtttaggagtcgtggaagaggaaaatgaggaaagttccgttcagaggcttgcacgtagttcatgtccacctccacctcctgtcccgcccccgaaacctgcttcattaaactcaagtcctagaaaatctctgacgggcagttcacatgctatccggataggatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="28513" stop="26522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28212" g_stop="28101" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28100" i_stop="27496" i_length="605">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27495" g_stop="26822" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="786" r_length="674" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E717959" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28212" e_stop="28101"/>
          <exon e_start="27495" e_stop="26822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTAGAAGTTTATTTGTACCCATTTTCCCCATTTGTTCGGAATCTTCATGTAATAAACCCTAGCTAGCTTCTACTAGCAGGTTCTGGTTGCTGGTGATTCTAAAATCAAGTAAGTTATATCTAACTTTGGTCAACTATATCCTTCTGCATTTGTTTTAGTTTTTTTTTTGTATGCTGAGATGTGTTTTTTCATCAATATTTTGTTGATTCTGTTTGTGGGGTTTGGTAATTAGCTTGAAAGGTTGATTCTTGATATTCTATTAAGATATCTTTGTGGTAAAGTTTCTATTTTTTCAAGAATTGGGGTTTGTCTTTATTGATTGCTGTGTAAATTTTTGATGATCTCATGTGTATGGCTGTGGACATTTTGGGGTGTTTTTCCTTTTAAATTTTTTGATTTTTTTGAAGCTGGCATGGTTTAATGGATTAGTTATATGATGAAACTTGTTGAATTTGAATTTTGGTATTTCAAAATGTTCTTGTGGTTAAGTGAAGTGAATTGGGTCCTTTTTTGGGTATATCTTTGTTTTTTTCTTAGTTTTTTGTGGTGATTTGATGGTCTTTATTGCAGTTTTGACTAGTGGAGGTGAACTTTGTATTTGGGGCTTTACTTTTGGGTAATTTCAAGTGGCATTAGGAAAAAAGGGGGTTTTCTTGTTTCAAAATAAGATTATTGGAGATCAAGGTCTCATGAGAATTTTTAGGGGAATGCAGAAATTAGTTCGTGAGTATAAGACAAAAGTTAGCTGCTGGGACAAATCGTTCAGCCAAGGTATTGGTGTGACTGCCCCAAAGGCCAGGAAGCGTGACAAATTCAAAGCAAGGGCTTTATTTCTCTAATTTCGGTTGAAGAAGACTACACAAAATGACTAGGATACTGGTTCAGCGCGGTTCTGCTGGAGCTTCATCGTCTTCATCCTCAAATCAAAACAGGTCATCAACTTCAATCCCTGGTTCGTCTTCTTCTTCAGCTCCAACCCAGCCACAGGCGTCTAGTAGTAGTCAGGTATTATCAGCTTTGAAAGATGATGATTTCGTGGAAGAAATACAAGAACAGGTTGCTTTAGAAGAGTCGTCCGTTGCTTCTTCAAACTATAAGGGTGACGGTGAATTGTTGGAAAGTTTGGGCAGCGAAGAAAGCAACAATGAAGAAAAGATTGTTGACAACGAGAAGAGAAATAGTGGTTTTGACAGTGAGGATTTGACAAGGAAATGTGATGGTTTAGGAGTCGTGGAAGAGGAAAATGAGGAAAGTTCCGTTCAGAGGCTTGCACGTAGTTCATGTCCACCTCCACCTCCTGTCCCGCCCCCGAAACCTGCTTCATTAAACTCAAGTCCTAGAAGATCTCTGACGGGCAGTTCACATGCTATCCGGATAGGATCATCTA</genome_strand>
        <mrna_strand>TTACCTAGAAGTTTATTTGTACCCATTTTCCCCATTTGTTCGGAATCTTCATGTAATAAACCCTAGCTAGCTTCTACTAGCAGGTTCTGGTTGCTGGTGATTCTAAAATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTTCGTGAGTATAAGACAAAAGTTAGCTGCTGGGACAAATCGTTCAGCCAAGGTATTGGTGTGACTGCCCCAAAGGCCAGGAAGCGTGACAAATTCAAAGCAAGGGCTTTATTTCTCTAATTTCGGTTGAAGAAGACTACACAAAATGACTAGGATACTGGTTCAGCGCGGTTCTGCTGGAGCTTCATCGTCTTCATCCTCAAATCAAAACAGGTCATCAACTTCAATCCCTGGTTCGTCTTCTTCTTCAGCTCCAACCCAGCCACAGGCGTCTAGTAGTAGTCAGGTATTATCAGCTTTGAAAGATGATGATTTCGTGGAAGAAATACAAGAACAGGTTGCTTTAGAAGAGTCGTCCGTTGCTTCTTCAAACTATAAGGGTGACGGTGAATTGTTGGAAAGTTTGGGCAGCGAAGAAAGCAACAATGAAGAAAAGATTGTTGACAACGAGAAGAGAAATAGTGGTTTTGACAGTGAGGATTTGACAAGGAAATGTGATGGTTTAGGAGTCGTGGAAGAGGAAAATGAGGAAAGTTCCGTTCAGAGGCTTGCACGTAGTTCATGTCCACCTCCACCTCCTGTCCCGCCCCCGAAACCTGCTTCATTAAACTCAAGTCCTAGAAAATCTCTGACGGGCAGTTCACATGCTATCCGGATAGGATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314913" ref_strand="+" ref_description="SGN-E314913 [cTOA-31-E14]">
      <seq>tgtctctctctagaaaaaacccagctttctctctctatacgtacacacgtatatatatccatctgcatacatatgtacatttctatcgcctagaagtttatttgtacccgttttccccatttgttcggaatcttcatgtaatagaccctatctagcttctactaacaagttctggttgctggtgattctagaatcaattttgactaatggaggtgaactttgtatttggggctttacttttgggtaatttcaagtggcattaggaaaaaaagaggttttcttggttcaaaatgagattattggagatcaaggtctcatgagaatttttaagggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="28596" stop="27198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28296" g_stop="28101" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28100" i_stop="27639" i_length="462">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27638" g_stop="27498" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="338" r_length="141" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E314913" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28296" e_stop="28101"/>
          <exon e_start="27638" e_stop="27498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTCTCTCTAGAAAAAACCCAGCTTTCTCTCTCTATACGTACACACGTATATATATCCATCTGCATACATATGTACATTTCT-TCACCTAGAAGTTTATTTGTACCCATTTTCCCCATTTGTTCGGAATCTTCATGTAATAAACCCTAGCTAGCTTCTACTAGCAGGTTCTGGTTGCTGGTGATTCTAAAATCAAGTAAGTTATATCTAACTTTGGTCAACTATATCCTTCTGCATTTGTTTTAGTTTTTTTTTTGTATGCTGAGATGTGTTTTTTCATCAATATTTTGTTGATTCTGTTTGTGGGGTTTGGTAATTAGCTTGAAAGGTTGATTCTTGATATTCTATTAAGATATCTTTGTGGTAAAGTTTCTATTTTTTCAAGAATTGGGGTTTGTCTTTATTGATTGCTGTGTAAATTTTTGATGATCTCATGTGTATGGCTGTGGACATTTTGGGGTGTTTTTCCTTTTAAATTTTTTGATTTTTTTGAAGCTGGCATGGTTTAATGGATTAGTTATATGATGAAACTTGTTGAATTTGAATTTTGGTATTTCAAAATGTTCTTGTGGTTAAGTGAAGTGAATTGGGTCCTTTTTTGGGTATATCTTTGTTTTTTTCTTAGTTTTTTGTGGTGATTTGATGGTCTTTATTGCAGTTTTGACTAGTGGAGGTGAACTTTGTATTTGGGGCTTTACTTTTGGGTAATTTCAAGTGGCATTAGGAAAAAAGGGGGTTTTCTTGTTTCAAAATAAGATTATTGGAGATCAAGGTCTCATGAGAATTTTTAGGGGAATGC</genome_strand>
        <mrna_strand>TGTCTCTCTCTAGAAAAAACCCAGCTTTCTCTCTCTATACGTACACACGTATATATATCCATCTGCATACATATGTACATTTCTATCGCCTAGAAGTTTATTTGTACCCGTTTTCCCCATTTGTTCGGAATCTTCATGTAATAGACCCTATCTAGCTTCTACTAACAAGTTCTGGTTGCTGGTGATTCTAGAATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGACTAATGGAGGTGAACTTTGTATTTGGGGCTTTACTTTTGGGTAATTTCAAGTGGCATTAGGAAAAAAAGAGGTTTTCTTGGTTCAAAATGAGATTATTGGAGATCAAGGTCTCATGAGAATTTTTAAGGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375835" ref_strand="+" ref_description="SGN-E375835 [TUS-15-A4](-)">
      <seq>aaagcattccaaaatcgtggtcaaagagcttggtttggatcaaaaagtacacatttggaatggtgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgtagttggagccgaacgctgtacatggaagttcacagagttccacaagacacttagagagagaggactgactaggccattcactggacttgaggatatgtcggaaagctggagttaccctccgcttaatgataccgcagttgcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcataaaaaatccttttggtctaatattgttgttgttacaaattttacttctctatttacatttatgatgtgttcagagttcttagtccatgtattatgattgatttaattttacaggaggaaagaaaagaagagatatccagttaaaatcagagttgaacaatgaggctcttattcttttttaactcattgagggggttttccacttatatattgacaaaaataaatgtcaatcttcatatgtaaagtagaagcatttgcttgctcaaccaaagataaaaaaaaattaacaagtttaaatctaattatgctttgttggattttttaaatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="31664" stop="28887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31456" g_stop="31453" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31362" g_stop="31299" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="68" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="162" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31024" g_stop="30916" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="271" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29619" g_stop="29183" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="708" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E375835" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31456" e_stop="31453"/>
          <exon e_start="31362" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="30916"/>
          <exon e_start="29619" e_stop="29183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTATTTTTTTTACAGATTGTGTTTTAAATTATACCAATTGGTAACATCTTTAATGTGTTTGACACACTGTGCAATGCTCATTTCTTGTAGCATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGATGTAAGGATCCCTTCTCCTTTCTCCTTTATGGATAAAATAGGGGAACTTTTAACTTGAGAAATACATTCGGTGCAAACTAAACTGATGATTCTTGTTCAGAGTAGTTGATAGTTGTGATGATATTCTGCCTTGAGAAAAGGAAGATTGTTCTTCTATACAAGTATGCCTAGACAATGCTAGGTGCTTGTGTGTCCAAACTTGTCTTTCTTGTCACTACAAGCATTTGGCTTTGACGGGATGGTGGTTAATTTAGAACATGGTTGGCGTGTTTATTCTTTTGTGTTTACGTGGTATTGTTCTCATGCGTTAAATAGCGATGAGTCACCTAAGAAGTGTGTTCATAGAATGAGCTTTACAGGAAGGCATCTGGATTGCTCATGCTGAAAATATTCTGAGAGTTACTTAGATTATTTGCTTGTGGAAGCAGCATATATGATTTATGGGCAATTACTTAGATTTACATTTTGTGCTACAACCTTATCTGATAGAAAAGAATCTTAAAGCTTGAAACCAATCTTACCTGGGATTGCAAATCCAAAGTTTGTCAGTGGATCCAGCTGTAACAGTGCCTATAATTGATTTCTTCTATGCAATACTAGTCGATACTGTTAGCATGATTGGACAGATTCTAACTATCTGTACATATATATGTGATAAACTCTAAATATTTGTGTAGTGATGATAGGAGATAGCATAGATTAATGTAGCATATTTTCAGAAATATTACAATTAGGAATATATATAGCAGAACTTTAGGCATGTAAATCAGAATTCTCTCTATTTAATGGAAGAACTTCATTTGACAGAACTCATTCAGCAACATTGACTAGTCAGTGCTTTGATTCTTAGTTTCTTTCATCTGTGATTTCTTCAGAATTGATCAAATCATCAAATTACGTTGATAGGTCCACATATTATGCGTAGTGTTAAGGCATGTATACGCCTCTATTTTTTCTCATGAAATCTTTAGAATTTCACTGCTTAGCTTTCAATCCGCCTCGTGAAAAATTGGAAAAAATGGTTCATTTTCCCATATAGAAGTATATTTGCTTGAGTGAATATGTCTAAGATGTATTGCTTTACCCATAAAGAAGTAATTTTTTGAGATTGCCTTGATTATCGAGTTGAGAGGAAGTTCTCACATCTGGAAGACTACTTGACAACAGCAATAACTACGCCTCACTCCCAAATCCCAATCAAGTTGGAGTCGGCTATTTGAATTCCTTTTCTGTTCTGTTAATACACTTAACATATTTCCATCTTCTTTTTTCTTAAATCTCCCCTTTGACAACGCAGATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATATATATTAT</genome_strand>
        <mrna_strand>AAAG..........................................................................................CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCAAAAAGTACACATTTGGAATGGTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358575" ref_strand="-" ref_description="SGN-E358575 [cLHT-22-B22]">
      <seq>aaagctggagttaccctccgcttaatgataccgcagtagcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcatagaaaatccttttggtctaatattgttgttgttacaaattttacttctctttttacatttatgatgtgttcagagttcttagtccatgtattatgattgatttaattttacagaaggaaaaaaaaagaagagatatacagataaactcagagttgaacaatgaggctcttattcttttttaactcattgagggttttttccacttatatattgacaaaattaaatgtcaatcttcatatgtaaagtagaagcatttgcttgctcaaccaaagataaaaaaaaattaacaagtttaaatctaatcccaaaaaaaacaaaaaaaacgcgagactagatctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="29912" stop="28918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29612" g_stop="29220" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="416"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E358575" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358575" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29612" e_stop="29220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGG-AAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTA</genome_strand>
        <mrna_strand>AAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTAGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAGAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTTTTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGAAGGAAAAAAAAAGAAGAGATATACAGATAAACTCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGTTTTTTCCACTTATATATTGACAAAATTAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242540" ref_strand="+" ref_description="SGN-E242540 [cLED-30-D1]">
      <seq>ccaaaagtacacatttggaatggtgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgtagttggagccgaacgctgtacatggaagttcacagagttccacaagacacttagagagagaggactgactaggccattcactggacttgaggatatgtcggaaagctggagttaccctccgcttaatgataccgcagttgcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcataaaaaatccttttggtctaatattgttgttgttacaaattttacttctctatttacatttatgatgtgttcagagttcttagtccatgtattatgattgatttaattttacaggaggaaagaaaagaagagatatccagttaaaatcagagttgaacaatgaggctcttattcttttttaactcattgagggggttttccacttatatattgacaaaaataaatgtcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="31626" stop="28989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31326" g_stop="31299" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="122" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31024" g_stop="30916" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29619" g_stop="29289" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="562" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E242540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31326" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="30916"/>
          <exon e_start="29619" e_stop="29289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGATGTAAGGATCCCTTCTCCTTTCTCCTTTATGGATAAAATAGGGGAACTTTTAACTTGAGAAATACATTCGGTGCAAACTAAACTGATGATTCTTGTTCAGAGTAGTTGATAGTTGTGATGATATTCTGCCTTGAGAAAAGGAAGATTGTTCTTCTATACAAGTATGCCTAGACAATGCTAGGTGCTTGTGTGTCCAAACTTGTCTTTCTTGTCACTACAAGCATTTGGCTTTGACGGGATGGTGGTTAATTTAGAACATGGTTGGCGTGTTTATTCTTTTGTGTTTACGTGGTATTGTTCTCATGCGTTAAATAGCGATGAGTCACCTAAGAAGTGTGTTCATAGAATGAGCTTTACAGGAAGGCATCTGGATTGCTCATGCTGAAAATATTCTGAGAGTTACTTAGATTATTTGCTTGTGGAAGCAGCATATATGATTTATGGGCAATTACTTAGATTTACATTTTGTGCTACAACCTTATCTGATAGAAAAGAATCTTAAAGCTTGAAACCAATCTTACCTGGGATTGCAAATCCAAAGTTTGTCAGTGGATCCAGCTGTAACAGTGCCTATAATTGATTTCTTCTATGCAATACTAGTCGATACTGTTAGCATGATTGGACAGATTCTAACTATCTGTACATATATATGTGATAAACTCTAAATATTTGTGTAGTGATGATAGGAGATAGCATAGATTAATGTAGCATATTTTCAGAAATATTACAATTAGGAATATATATAGCAGAACTTTAGGCATGTAAATCAGAATTCTCTCTATTTAATGGAAGAACTTCATTTGACAGAACTCATTCAGCAACATTGACTAGTCAGTGCTTTGATTCTTAGTTTCTTTCATCTGTGATTTCTTCAGAATTGATCAAATCATCAAATTACGTTGATAGGTCCACATATTATGCGTAGTGTTAAGGCATGTATACGCCTCTATTTTTTCTCATGAAATCTTTAGAATTTCACTGCTTAGCTTTCAATCCGCCTCGTGAAAAATTGGAAAAAATGGTTCATTTTCCCATATAGAAGTATATTTGCTTGAGTGAATATGTCTAAGATGTATTGCTTTACCCATAAAGAAGTAATTTTTTGAGATTGCCTTGATTATCGAGTTGAGAGGAAGTTCTCACATCTGGAAGACTACTTGACAACAGCAATAACTACGCCTCACTCCCAAATCCCAATCAAGTTGGAGTCGGCTATTTGAATTCCTTTTCTGTTCTGTTAATACACTTAACATATTTCCATCTTCTTTTTTCTTAAATCTCCCCTTTGACAACGCAGATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATC</genome_strand>
        <mrna_strand>CCAAAAGTACACATTTGGAATGGTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244522" ref_strand="+" ref_description="SGN-E244522 [cLED-38-M1]">
      <seq>ccaaaagtacacatttggaattttgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgtagttggagccgaacgctgtacatggaagttcacagagttccacaagacacttagagagagaggactgactaggccattcactggacttgaggatatgtcggaaagctggagttaccctccgcttaatgataccgcagttgcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcataaaaaatccttttggtctaatattgttgttgttacaaattttacttctctatttacatttatgatgtgttcagagttcttagtccatgtattatgattgatttaattttacaggaggaaagaaaagaagagatatccagttaaaatcagagttgaacaatgaggctcttattcttttttaactcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="31626" stop="29031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31326" g_stop="31299" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="122" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31024" g_stop="30916" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="231" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29619" g_stop="29331" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="520" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E244522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31326" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="30916"/>
          <exon e_start="29619" e_stop="29331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGATGTAAGGATCCCTTCTCCTTTCTCCTTTATGGATAAAATAGGGGAACTTTTAACTTGAGAAATACATTCGGTGCAAACTAAACTGATGATTCTTGTTCAGAGTAGTTGATAGTTGTGATGATATTCTGCCTTGAGAAAAGGAAGATTGTTCTTCTATACAAGTATGCCTAGACAATGCTAGGTGCTTGTGTGTCCAAACTTGTCTTTCTTGTCACTACAAGCATTTGGCTTTGACGGGATGGTGGTTAATTTAGAACATGGTTGGCGTGTTTATTCTTTTGTGTTTACGTGGTATTGTTCTCATGCGTTAAATAGCGATGAGTCACCTAAGAAGTGTGTTCATAGAATGAGCTTTACAGGAAGGCATCTGGATTGCTCATGCTGAAAATATTCTGAGAGTTACTTAGATTATTTGCTTGTGGAAGCAGCATATATGATTTATGGGCAATTACTTAGATTTACATTTTGTGCTACAACCTTATCTGATAGAAAAGAATCTTAAAGCTTGAAACCAATCTTACCTGGGATTGCAAATCCAAAGTTTGTCAGTGGATCCAGCTGTAACAGTGCCTATAATTGATTTCTTCTATGCAATACTAGTCGATACTGTTAGCATGATTGGACAGATTCTAACTATCTGTACATATATATGTGATAAACTCTAAATATTTGTGTAGTGATGATAGGAGATAGCATAGATTAATGTAGCATATTTTCAGAAATATTACAATTAGGAATATATATAGCAGAACTTTAGGCATGTAAATCAGAATTCTCTCTATTTAATGGAAGAACTTCATTTGACAGAACTCATTCAGCAACATTGACTAGTCAGTGCTTTGATTCTTAGTTTCTTTCATCTGTGATTTCTTCAGAATTGATCAAATCATCAAATTACGTTGATAGGTCCACATATTATGCGTAGTGTTAAGGCATGTATACGCCTCTATTTTTTCTCATGAAATCTTTAGAATTTCACTGCTTAGCTTTCAATCCGCCTCGTGAAAAATTGGAAAAAATGGTTCATTTTCCCATATAGAAGTATATTTGCTTGAGTGAATATGTCTAAGATGTATTGCTTTACCCATAAAGAAGTAATTTTTTGAGATTGCCTTGATTATCGAGTTGAGAGGAAGTTCTCACATCTGGAAGACTACTTGACAACAGCAATAACTACGCCTCACTCCCAAATCCCAATCAAGTTGGAGTCGGCTATTTGAATTCCTTTTCTGTTCTGTTAATACACTTAACATATTTCCATCTTCTTTTTTCTTAAATCTCCCCTTTGACAACGCAGATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGA</genome_strand>
        <mrna_strand>CCAAAAGTACACATTTGGAATTTTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278766" ref_strand="+" ref_description="SGN-E278766 [cLER-2-K2]">
      <seq>tttgccgaagcccttattggtggtcaacattggaggccctacaagatactgcaggtatggggcagaccttgtaaagcaattaacagcctcccttcacaatgttcttgggagctgtgggagcataagaatctcgttctccagaaggacaccagaaaagcattccaaaatcgtggtcaaagagcttggtttggatccaaaagtacacatttggaatggtgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgtagttggagccgaacgctgtacatggaagttcacagagttccacaagacacttagagagagaggactgactaggccattcactggacttgaggatatgtcggaaagctggagttaccctccgcttaatgataccgcagttgcagctagccgtgtgaatgaagctcttgctgagaaaggatggaagattaaagcataaaaaatccttttggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="32637" stop="29201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32337" g_stop="32294" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31565" g_stop="31453" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="157" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31362" g_stop="31299" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="221" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="315" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31024" g_stop="30916" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="424" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29619" g_stop="29501" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="543" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E278766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32337" e_stop="32294"/>
          <exon e_start="31565" e_stop="31453"/>
          <exon e_start="31362" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="30916"/>
          <exon e_start="29619" e_stop="29501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAAGTACGATATTTCTTAAATTCAATGACTTATATCCTTTATTGCAAAATTGAACTCCACAACTTCATTTTGTTGAAGAAAGGAAAGTATGAATAGACAAGGCTGAAGTAACATTAGATATAAATTGGAATAAGCTTTGTATGAAAAAGACTAGGCTGAAATAACATGAGATATGAATTGGAATAAACATCGTATGAAAAGACGAGGCTGAAATAACATGAGATATGTATTGGAATAAAATTCTTATCCCATGTAAAGCAGACAGGTCTGTTTGTGTAGATTTATTGGTTGCTTTCAAAATTTTGTTTTTTTATGTTGTTGCCGCTCAACATCTTCTTGAGTGGACTATACTTTATCTTCATAACTGGGTTTCATATTGCTTGGTTCATAGTTTGAGGATACCTGTAACCCAATTTATTCTGTTCCAATCAGTCTTAAATGAGTATCATTCCTTCTCGACAGCTAGTATCTACATAGTTTAATCATCTTTGTTGCATGGTTTACACGTTATTTGGAGACTTCCAAGAAGGTAGTATATTTGAATCTTGCTTTTCTCTATCTTCAGTTTTTAAGTGGTCTCGGAAAACCTAGACATGTATGAGAATTCATGAAATTTTATCAGGACTGTAGAGTATGACTATTTTTTTCTTTATCTATCCCTTTGCTGTAGCTTCTCCGTTGCCGCTAGGCTCATGTGTATAAATCTTATATCGTTCCTGGATTATGATTAGGATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAGGTATTTTTTTTACAGATTGTGTTTTAAATTATACCAATTGGTAACATCTTTAATGTGTTTGACACACTGTGCAATGCTCATTTCTTGTAGCATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGATGTAAGGATCCCTTCTCCTTTCTCCTTTATGGATAAAATAGGGGAACTTTTAACTTGAGAAATACATTCGGTGCAAACTAAACTGATGATTCTTGTTCAGAGTAGTTGATAGTTGTGATGATATTCTGCCTTGAGAAAAGGAAGATTGTTCTTCTATACAAGTATGCCTAGACAATGCTAGGTGCTTGTGTGTCCAAACTTGTCTTTCTTGTCACTACAAGCATTTGGCTTTGACGGGATGGTGGTTAATTTAGAACATGGTTGGCGTGTTTATTCTTTTGTGTTTACGTGGTATTGTTCTCATGCGTTAAATAGCGATGAGTCACCTAAGAAGTGTGTTCATAGAATGAGCTTTACAGGAAGGCATCTGGATTGCTCATGCTGAAAATATTCTGAGAGTTACTTAGATTATTTGCTTGTGGAAGCAGCATATATGATTTATGGGCAATTACTTAGATTTACATTTTGTGCTACAACCTTATCTGATAGAAAAGAATCTTAAAGCTTGAAACCAATCTTACCTGGGATTGCAAATCCAAAGTTTGTCAGTGGATCCAGCTGTAACAGTGCCTATAATTGATTTCTTCTATGCAATACTAGTCGATACTGTTAGCATGATTGGACAGATTCTAACTATCTGTACATATATATGTGATAAACTCTAAATATTTGTGTAGTGATGATAGGAGATAGCATAGATTAATGTAGCATATTTTCAGAAATATTACAATTAGGAATATATATAGCAGAACTTTAGGCATGTAAATCAGAATTCTCTCTATTTAATGGAAGAACTTCATTTGACAGAACTCATTCAGCAACATTGACTAGTCAGTGCTTTGATTCTTAGTTTCTTTCATCTGTGATTTCTTCAGAATTGATCAAATCATCAAATTACGTTGATAGGTCCACATATTATGCGTAGTGTTAAGGCATGTATACGCCTCTATTTTTTCTCATGAAATCTTTAGAATTTCACTGCTTAGCTTTCAATCCGCCTCGTGAAAAATTGGAAAAAATGGTTCATTTTCCCATATAGAAGTATATTTGCTTGAGTGAATATGTCTAAGATGTATTGCTTTACCCATAAAGAAGTAATTTTTTGAGATTGCCTTGATTATCGAGTTGAGAGGAAGTTCTCACATCTGGAAGACTACTTGACAACAGCAATAACTACGCCTCACTCCCAAATCCCAATCAAGTTGGAGTCGGCTATTTGAATTCCTTTTCTGTTCTGTTAATACACTTAACATATTTCCATCTTCTTTTTTCTTAAATCTCCCCTTTGACAACGCAGATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTA</genome_strand>
        <mrna_strand>TTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG..........................................................................................CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335986" ref_strand="+" ref_description="SGN-E335986 [cTOE-6-J9]">
      <seq>aagttgattttgctgctcttagagctgcagctgccacctggcatgaagagtttgcacctttgccgaagcccttattggtggtcaacattggaggccctacaagatactgcaggtatggggcagaccttgtaaagcaattaacagcctcccttcacaatgttcttgggagctgtgggagcataagaatctcgttctccagaaggacaccagaaaagcattccaaaatcgtggtcaaagagcttggtttggatccaaaagtacacatttggaatggtgaagagccaaatccacacatggggcatctggcttgggctgatgtttttgttatcacagcagattcagttagcatgttgagtgaggcttgcagtactgggaagcctgtgtatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="32695" stop="30809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32395" g_stop="32294" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31565" g_stop="31453" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="215" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31362" g_stop="31299" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="279" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88">
            <donor d_prob="0.240" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31210" g_stop="31117" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31024" g_stop="31009" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="389" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E335986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32395" e_stop="32294"/>
          <exon e_start="31565" e_stop="31453"/>
          <exon e_start="31362" e_stop="31299"/>
          <exon e_start="31210" e_stop="31117"/>
          <exon e_start="31024" e_stop="31009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAAGTACGATATTTCTTAAATTCAATGACTTATATCCTTTATTGCAAAATTGAACTCCACAACTTCATTTTGTTGAAGAAAGGAAAGTATGAATAGACAAGGCTGAAGTAACATTAGATATAAATTGGAATAAGCTTTGTATGAAAAAGACTAGGCTGAAATAACATGAGATATGAATTGGAATAAACATCGTATGAAAAGACGAGGCTGAAATAACATGAGATATGTATTGGAATAAAATTCTTATCCCATGTAAAGCAGACAGGTCTGTTTGTGTAGATTTATTGGTTGCTTTCAAAATTTTGTTTTTTTATGTTGTTGCCGCTCAACATCTTCTTGAGTGGACTATACTTTATCTTCATAACTGGGTTTCATATTGCTTGGTTCATAGTTTGAGGATACCTGTAACCCAATTTATTCTGTTCCAATCAGTCTTAAATGAGTATCATTCCTTCTCGACAGCTAGTATCTACATAGTTTAATCATCTTTGTTGCATGGTTTACACGTTATTTGGAGACTTCCAAGAAGGTAGTATATTTGAATCTTGCTTTTCTCTATCTTCAGTTTTTAAGTGGTCTCGGAAAACCTAGACATGTATGAGAATTCATGAAATTTTATCAGGACTGTAGAGTATGACTATTTTTTTCTTTATCTATCCCTTTGCTGTAGCTTCTCCGTTGCCGCTAGGCTCATGTGTATAAATCTTATATCGTTCCTGGATTATGATTAGGATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAGGTATTTTTTTTACAGATTGTGTTTTAAATTATACCAATTGGTAACATCTTTAATGTGTTTGACACACTGTGCAATGCTCATTTCTTGTAGCATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAGGTGACTCAGATACTATAATCTGTAATGGTTGTGTAGTTATAGTTTTATTTGGATGGTCATCTAACGGATACTTTTTTTTAATATTCAGAGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGGGTATGTCTCACTATTTGCTCAGCAGTTAATGATCTAGTATTTTTAACATGATTTTCCTAAAATTTCGTTATGATTCATATCTTCCTTCCCAGGAAGCCTGTGTATGTA</genome_strand>
        <mrna_strand>AAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG..........................................................................................CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG........................................................................................AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG............................................................................................GAAGCCTGTGTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375836" ref_strand="+" ref_description="SGN-E375836 [TUS-15-A4]">
      <seq>ctcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacatggtaatcacccccaagcatgactattactctttaactcctcaaggaaaggaacaagttcctcgttttctgcaaaagtggataacaccccaagaaccacctgataagcatgttgtacttacggtaggagctctacatcaagttgattttgctgctcttagagctgcagctgccacctggcatgaagagtttgcacctttgccgaagcccttattggtggtcaacattggaggccctacaagatactgcangtatggggcagaccttgtaaagcaattaacagcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="38973" stop="31219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38673" g_stop="38644" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="260" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="357" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32531" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="507" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32530" i_stop="32421" i_length="110">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32420" g_stop="32294" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="634" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31565" g_stop="31519" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="681" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E375836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38673" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32531"/>
          <exon e_start="32420" e_stop="32294"/>
          <exon e_start="31565" e_stop="31519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAGGTATCCTCAACATTTATATTTAGTTTTAGCATGTAATGTAATATATTTCTGTGTTGAGAGCTTTTGTACCTACATTGCTGAACTATGAATTTTGTTTTCTGGAAAGGTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAAGTACGATATTTCTTAAATTCAATGACTTATATCCTTTATTGCAAAATTGAACTCCACAACTTCATTTTGTTGAAGAAAGGAAAGTATGAATAGACAAGGCTGAAGTAACATTAGATATAAATTGGAATAAGCTTTGTATGAAAAAGACTAGGCTGAAATAACATGAGATATGAATTGGAATAAACATCGTATGAAAAGACGAGGCTGAAATAACATGAGATATGTATTGGAATAAAATTCTTATCCCATGTAAAGCAGACAGGTCTGTTTGTGTAGATTTATTGGTTGCTTTCAAAATTTTGTTTTTTTATGTTGTTGCCGCTCAACATCTTCTTGAGTGGACTATACTTTATCTTCATAACTGGGTTTCATATTGCTTGGTTCATAGTTTGAGGATACCTGTAACCCAATTTATTCTGTTCCAATCAGTCTTAAATGAGTATCATTCCTTCTCGACAGCTAGTATCTACATAGTTTAATCATCTTTGTTGCATGGTTTACACGTTATTTGGAGACTTCCAAGAAGGTAGTATATTTGAATCTTGCTTTTCTCTATCTTCAGTTTTTAAGTGGTCTCGGAAAACCTAGACATGTATGAGAATTCATGAAATTTTATCAGGACTGTAGAGTATGACTATTTTTTTCTTTATCTATCCCTTTGCTGTAGCTTCTCCGTTGCCGCTAGGCTCATGTGTATAAATCTTATATCGTTCCTGGATTATGATTAGGATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCC</genome_strand>
        <mrna_strand>CTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTT..............................................................................................................GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACTGCANGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727065" ref_strand="+" ref_description="SGN-E727065 [LA13CE06]">
      <seq>tcttaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatctagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagctcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcagagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactaaaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaagcttgtcatctattttggaagctgacgtgaagagtattgttacaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacatggtaatcacccccaagcatgactattactctttaactcctcaaggaaaggaacaagttcctcgttttctgcaaaagtggataacaccccaagaaccacctgataagcatgttgtaggtacttacggtaggagctctacatcaagttgattttgctgctcttagagctgcagctgccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39221" stop="32058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38921" g_stop="38644" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="508" r_length="230" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="605" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32527" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="759" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32526" i_stop="32421" i_length="106">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32420" g_stop="32358" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="822" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E727065" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38921" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32527"/>
          <exon e_start="32420" e_stop="32358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAGGTATCCTCAACATTTATATTTAGTTTTAGCATGTAATGTAATATATTTCTGTGTTGAGAGCTTTTGTACCTACATTGCTGAACTATGAATTTTGTTTTCTGGAAAGGTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACC</genome_strand>
        <mrna_strand>TCTTAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCTAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGCTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCAGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAAACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAAGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTACAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAG..........................................................................................................GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326040" ref_strand="+" ref_description="SGN-E326040 [cTOC-16-C11]">
      <seq>aaaaatcaactcttttttgtattcttttggcctttgcggttatctaaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacatggtaatcacccccaagcatgactattactctttaactcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39263" stop="32302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38963" g_stop="38644" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="550" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="647" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32602" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="726" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E326040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38963" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTC</genome_strand>
        <mrna_strand>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314760" ref_strand="+" ref_description="SGN-E314760 [cTOA-20-K24]">
      <seq>tttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatccaaggtcccgtttggacaggttcgacatggtaatcaccccccagcatgactattactctttaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39201" stop="32305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38901" g_stop="38644" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="488" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="585" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32605" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="661" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E314760" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38901" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTC</genome_strand>
        <mrna_strand>TTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCCAGCATGACTATTACTCTTTAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201569" ref_strand="+" ref_description="SGN-E201569 [cLEC-11-A21]">
      <seq>ctcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccacatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggtaaatggtggcaacgtacgcttgtcatctatttatgaagctgacgtgaagagtattgttagaatggctcgcgagacatttgaaaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactaactccattaaaagaatggcatctgataatgcttttgttgtccagattcagcatacaaggtcccgtttggacaggttcgacatggtgatcaccccccagcatgactattactctttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="38973" stop="32307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38673" g_stop="38644" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="260" r_length="230" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="357" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32680" g_stop="32607" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="431" r_length="74" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E201569" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38673" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
          <exon e_start="32680" e_stop="32607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAGGTATGAAATCTGATTCTTCTGTGGGGAACATGTTTTTTCTGCAGATTGCTATAGTGGAAAGTTCATTTAACCACTTCCTTACTTCTTTATAATCACCTCCTCCTGTTTATATATTTTTTTAAATGACTTTCCTGCATCAGTGATGAAATAATTGGATGATTTATTCCTTGTGGAGATTAAAAGAAGAGAGGAACTGGTGTAACGGTTCTGTTTTTTGACAAAGTTAACAAGTTTTTTTTACAAACATTTCTAGGAAGAAGCTATCTGTTGTAACAAACTGATGGCCTCGAGGAAAGGAATCCCTTGGATCCACAGGGGCTGAGGAATTATTAGTATTCTTCAAATTGGGTTGGTTAAATCATGCGTACAGAAAGGCGAAAGCTTCCTAATTACAAGCCTAACCATGATGAACTTAAATTTCTATCAAATTAGTTCTATATTATCTTGAAGGTCTGCAGTATAACTCTGAACGCTTAAAAGACAAGGTTCCAAGAAGCACGATTCATAACACAATTGAAACCAATGATCTATTTCTTGGTAATTGCCATCTTATTTCTTCTCGTGGTAGATTTTTTAATGTCTTCTGACATCCTTTTTTTTTTCCAATACAATAGAAGTTGTGCATTGTGGACCCTTCTTCTCTATGGTTGTTTAACTCTTGCTGTTGGACAGCTTTGTTTGTAGATGAACTTTCATCTACTGGAGGTATAGGAACCTAGAAACTAAGAACTAAGAACTAAGAAAATGAGAGAAGAGTTAGATGCTTCATGCTTTACAACAGTTTCCATTTCTTTAGATATACTTGTATGTCTGGTTATCAAAAAAACTTATATGAGAAAGATGCGATTTACTCTTGCAGTTCATTTTATTTGATAAGTTAGTCTTGTAGTTTTTTTCTGGTTACCTATTAGAGACTAAATGCTTGAGAAGCTAAAGGCATGTTGAATTTTTTTGTATAACTTCCTTTTTTCTTCTTCAGACAGATACTTTAAGCTATCTATATTTGGATACACAAGTCTACATGTCAATGAACAATGTATCTTTTTTTTTTGGCCCACTCTGTCAATCAGCTGTTGCCATGAATTAGTACAATAGATGTTCTCCTGCTAAAGATAACTGCTAGTTGATATGAGCTACAGTGGAACCAAAATATTGAAGAAATTAGGCTGCAAGTCTAGTGAAATTCCTTGTAGTGAATGTGCAAATCTGTTGTGTTTCTAAAAGCAACAAGGTCTATGAGGCTTGAAGCAAAAAGCAAGAAGTGAGCACAAAAGTCAATAACATTAAAAAATATCAAATACATATGAATTTAGTACTTTAATAATCAATTACAACTATGCACCTAAGGGTATAACCTAGTGGTCGATGAAGTGGGTTGAGAATTTTGAGATCTCAAGTTCAAATTCATGCAGAGTCAAAAAGACTAGGTGATTTCTTCCATCTGTCCGAGCCTTTGACAGAGTTACCTGATACCTGTGTTAGTGAGAGGTAGCAGGTACCTTGTGAAATTAGTCGAGGTACGAGCAGACGGCCCAAACACCATGATATAAAAATGTTGATATTAATCCAACTCATCAATTGAGATTCAACGAATTGAATGCTTCTCTTGTTGGATCACTTTGTGCATCACTATTTGAAGTACACACTTATGTGAAATCCATGACTTCACCCATGAAGCGATAATCCCTTGCTTCGCACAGTGATGGCTTTCAGTAACACGCACAAGTCACATTATTTGGCAATTGTTATTGTTCCTTGTTTTCTGAGTGCTTTGTAATGCTTTCCGTATTTATTTGGCATGTCCTCTTTACTTCTGTACCTTTCTTTTTCATACTGCTTTGATGTGCGTTACTTGAGCAGAGGGTCTCTTGGAAACACCCTCTCTACCTCCACGAGGTAGGGATAAGGTCCGGGTACATTCTACCCTCCCCAGGCTCCACCTATTGAATTACACTGTGTATGCTGTTGTTTGTGTACACAAGTTGCTCTGACTAGAGACTTCTTAAACTTTTGTGATAATTTTTTTTTCTTGAACAGCTGGTTGACTAATGAAGTATTCCTAAATTTTTTGGACTGTTAATTGTAGCTGCTGATTTTCCTGTTTAGTTCAGCAAAGAAAGCTGTTATTGCATATTTGGATTGTATGCCGTGTATTTTTTTATTTTTTTATTTTTTTTGTAAATTCTTGAATATTGTTGGGTCTGGAGAAGAAAATCTTATTGATTTGTCTATGCTGTATTTTAACTTCAGATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAAC</genome_strand>
        <mrna_strand>CTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCACATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGTAAATGGTGGCAACGTACGCTTGTCATCTATTTATGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAACTCCATTAAAAGAATGGCATCTGATAATGCTTTTGTTGTCCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCATACAAGGTCCCGTTTGGACAGGTTCGACATGGTGATCACCCCCCAGCATGACTATTACTCTTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250851" ref_strand="+" ref_description="SGN-E250851 [cLEG-13-D13]">
      <seq>ggagttcatggtgtgattaggcgagctgttgtcatcggtaatgggggtcctgtttcggagaatcaaagtattggtctgattcaagcactcggcctctctgattagcacactctatatcgggttactagaccactaagaggagtgaatgagtggctacactggcttcctgtgtcattacacacaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatctggaagagatacgatctcaataactagctccattaaaagattggcatctgataatgtttttgttgtccagattcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39060" stop="34625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38760" g_stop="38644" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="347" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="444" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E250851" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38760" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG</genome_strand>
        <mrna_strand>GGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGGGGTCCTGTTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATTAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCACTAAGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTGTCATTACACACAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329167" ref_strand="+" ref_description="SGN-E329167 [cTOD-2-M6]">
      <seq>taaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaagatggtccattgctggtgattgcatctggaagagatacgatctcaataactagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39219" stop="34673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38919" g_stop="38644" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="506" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="34973" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="561" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E329167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38919" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="34973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGC</genome_strand>
        <mrna_strand>TAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337734" ref_strand="+" ref_description="SGN-E337734 [cTOE-17-N4]">
      <seq>tcaactcttttttgtattcttttggcctttgcggttatctaaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatgtaggcttgtcatctattttggaagctgacgtgaagagtattgttagaatggctcgcgagacatttgagaaggatggtccattgctggtgattgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39258" stop="34700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38958" g_stop="38644" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37378" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="545" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35027" g_stop="35000" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="573" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E337734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38958" e_stop="38644"/>
          <exon e_start="37607" e_stop="37378"/>
          <exon e_start="35027" e_stop="35000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAAGTAAGTTTCCACACAATTCCTAACATCATCTTCATTCATGTGATTCGTTTGGTTGCTGTTGCATTTTATGATAATTGTTTAATCATGGTAGTAATTTTTGAAGTATGTGGTCATTTCATTTTTTTTTTATGAGAAGGGAAACCCACAGCCGCTACCCTTTGGGTGCGCACAGGGTAAAACCTCCACTCGTATGCAATAGCTTGCAAACCAGATAGGAGAGGTAACCTGCACTAGTCAAGACTTGTGCAATGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATAGAAGTCCCAAGCTCAAACCACTGGGCCACCCCGAAGGGTTGTGGTCATTTCATCTTAAAAGTTAAGCTCTTAAAACTTAAGCTTAGAGAATGCACACTTTTCTTACTTAATTATGTCTTTGACACTCCCCCTTACGTGTGCTTAGTTTTTTTCATGGACCTAATGCGTGAAAATTCTTTTTGATAATGAGTGGCTGAGAGACATAAACTTATAAACTTTGTTTGCTATGATACTATGAAAAAAAATAAAAACTTGTCATAGACTTAATTAACATGGTATAAGGGGTGCTCCTTAATCCTTATAATGGAGTCTTAGATTATGTATTATGTATAATATGGTAGGTAATTGTTAATCACTATGCTGATAAGGTAAATAAACATTCTTTAATCAAATATGAAATATTTTAACATATTTAATATAATATTAGGTATAATTTTTCTTGTTCAAGTAATGATAAATCTAGACATGGATGAATTTAGACCCATATTCACTTGACATTCTAACATACTCCCTTAATTTCAAAGTGGACCAACCTACTTCAGAGTGCTTAATTCACCAAAAAGTTGACGTTTGCGGGAATAGTGCAGAGAAAAGAAAAGAAAGAAAAGAAAAGTGGCGTCAGAATTTATTTCGTCAAGAAGTCGTTCGTAACTCTATTTTCAACCACCAAGCAGAGATAGTGTTATAGATCCCGTAAATATTATCAATTTTACTTAATTAGCATAACAACAAGAATTTAGGGTTTAAGGGAGTAACAGGTCTGTCGTGCAAACCGGATCTTGAAAAGGCATGCGATCATGTGAATTGGAAATCCCAAGATTCCGTTACGCTTCAATAGGAATTTTGGGAGAAGTGGAGAAAATGGATCTATTTTTGTTCTTCTTCAGTGAGATTTTCTGTGTTGTTTAATGGTAACCAGTAAAGTGAAGTTTTTTGGATTTTCAACGGGTTTGAGACAGGGAGATCCTTTAGCTTCGATGTTATTTATTTTAGTCATGGAAGCTTTGAGCAGGATGATGCATAATGTTGTCTTTTTGTGTCTGTATGTGGGAGAGGATGTTATAGTTGATAAATATGGGATTACTGAAGGGGGTTGGAAAACTAGACATGTAGAACCTTTTGGTTATGGGGCGTGGACGAATGTCTTGAAGGAATGGGACTATTTTGTGGAAAATATCTCATTTTAGTTGGTAGTCGGGAGGAGAGTATACTTTTGGGAGTGACCTTTTGGTATTTGAGATTTAGAAGGGGTTTCCAAGATTGATAAGTGAGTGAGTTTCAAAGATTGATTGACTTACTTCATAGGAAAATTAGTCTGGTGGATAATCTCAATGTTTTGGTGGTGGGGCTTGGGAAACAATGGACTGTTTGGGTGATGTCTTTTTATGACAAACTTTTGGTCAGGGAGAAGATTGATTTCCTATGTAAATTAATATGCTCTCCAACTATGTCAAGGAAGATGTGCTATTTCACTTGGCCAACCTCTAGAGGGGTGATTTTGACAGCAAAAAAGTCTTGGAAAATGGAAGGCTGTCTGCGTCAGTTGATGTAACAAGTTAAGGAGGCAGACTAGGACATGGACGTTCTTCTTTTAAATTGCAGGATTATCATGAGACTATGGCTGAGATGTGAGTAGCATGCACTGAAGATAAATTGAGATAATATCATTTGAAATTGTTTGGTCATGTCCTGCATCAACATCGACCTTCAGATGCACCGATCAATAGGTTTGGAACCATGGTGAGGAAAAGTTTGAAAATGATATGAGGTAGACCTAAAATCACATAGGGAAATTACCTTTGTAGACCTACAATTTCTTGAAATCAATTCAGCTTAGCTAAATATAGGGCACAATAGAAGAAAAAGATACAATTATGAGTCTAACACATCTGAAATAACCACATGATCATCTCTATAACCTTTCTCAATTCTCATACATGACCTTCAATTTTGTAATGGTAGAACTAGTCTTTGTGCTCTTGATAAAAAACTCAGTGAAGTAAAGGTAGCTAATGATTGTTCATTCTCAGGGATGGTCCATTGCTGGTGATTGCATCT</genome_strand>
        <mrna_strand>TCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGTCCATTGCTGGTGATTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250523" ref_strand="+" ref_description="SGN-E250523 [cLEG-18-G12]">
      <seq>tgaaatcgatcttctacaattctagggtttgatattgttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagtccacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttcggagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggctttctgtatcattacacaaaacggtgtattacatcataagccagatatgtgggattctattgagaagaaggactagaaaactaggaactttgcctatggaaaatggtggcaatggaggcttgtcatctattttggaagctgacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39194" stop="37116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38894" g_stop="38644" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37416" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="443" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E250523" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38894" e_stop="38644"/>
          <exon e_start="37607" e_stop="37416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTG</genome_strand>
        <mrna_strand>TGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTTCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGGAGGCTTGTCATCTATTTTGGAAGCTGACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200320" ref_strand="+" ref_description="SGN-E200320 [cLEC-1-C19]">
      <seq>tatctaaagccatcatcagttgtttgaagtgaaatcgatcttctacaattctagggtttgatattgtttttttttcaatttcagtataaatgaagccgatacggttaccggaacctccatcaagttcacgaggaatcggcggtgtgccggatatatttgaaggtggagttcatggtgtgattaggcgagctgttgtcatcggtaatggttttcctgcttccgagaatcaaagtattggtctgattcaagcactcggcctctctgataagcacactctatatcgggttactagaccaagaggaggagtgaatgagtggctacactggcttcctgtatcattacacaaaaccgtgtattacatcataagccagatatgtgggattctattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39223" stop="37199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38923" g_stop="38644" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37607" g_stop="37499" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="390" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E200320" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38923" e_stop="38644"/>
          <exon e_start="37607" e_stop="37499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTT-CAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATATGTAAGCTCCTTTTCCTCAGTATTCGTCCAGTAATCTAATTACCTTCTATTGTCTTCAATGCGGAGATTTGATTAGTATTGAAATTAGTTGGCAGAAAGTTGTGATAGTTATTCTAGAGGTTGAATTATTTTGTTTACAATGAGGACAGATAAAATTGCAGGAAACTCAAACTTAATAGGATTATGTTTGTCATATAGATATTGATCTGCGTGGTGTATCCGAGTGATTTCTCCATGCATCTTACATGGACCTAGTGAAATTGATTTAGGAGAATTAGACTTGGAGTTGATGGAGTATTGTGTTATATGTGTGCTGATTTCTGGTAATTGATTTAAATATGTCTGTATCGTGCCGCTTTGTGTTGAAAATGATAGTGGAACCAAAACTTATGAAAATTTTGGGTAGCGCCAAATGTTTTTAGTAGCTTGTGGTTGTGAAGGTATTTTTGTAGGGGATCATTCAGAATTTATAGGTTAATAAAGTCAAACATGACAAGATAGTGGGCATGGAATTGAAATATTGTGTCTCGAGATTTTGGGTGGTGGGATTGCACTGATGACGGTTAATAGTTTCTTAACTGGTAAAGGGTTGAAAACTGTTTACTGCTTTTCCTATAGATTTTGATTGCACAACATTGGGGCTTAGTGTCTTATTACCTTTTGCTTTCTTGCTTCAAATTGAGCAAACAGGATGATAGACCTCTTCACTTTTAATTCCGTTTTTCGCTAACCCTGATTTATGTCTTGGTTGCCTGGCTATTTTGTTGATCCTCTCACAATGTATAGAAACCCGTTCACTTGTTCAAAAGTTTGCGTGAGTAGAGTGAATGAAACAATTGAAGGTTCTACTAATCTGGTTGATATTAGAATTTTCATGTCTTCCTTGATTTGAACGGTGTTATTTTAAAGTATGAAGTAATACAGAGAGGTAAGTAGGGGCTGAAAACTCGAAAGTCCTGTATTTATTTTGGGATAAGGTAATTGTTGATACATCTTTTTTAAAAAGAAATTGCTATTGATGCTTTCTATACATGCAGCGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGA</genome_strand>
        <mrna_strand>TATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTTCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCCGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACCGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740086" ref_strand="+" ref_description="SGN-E740086 [LC20AB10]">
      <seq>ggcaactcacagttgagtgacctttcctccattagagctccgaagcagcatcctactactactggtgtgattttgcttcagagcaaaacatactaatctctactgtttcgctcacttccacggctacaaatggatatacttttcgctcagatccaagccgatctccgttcaaatgacgcactccgtcaatcaggagctcttttacaagctctacaacaatccgcagccggaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="39751" stop="40584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40051" g_stop="40284" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E740086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40051" e_stop="40284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAACTCACAGTTGAGTGACCTTTCCTCCATTAGAGCTCCGAAGCAGCATCCTACTACTACTGGTGTGATTTTGCTTCAGAGCAAAACATACTAATCTCTACTGTTTCGCTCACTTCCACGGCTACAAATGGATATACTTTTCGCTCAGATCCAAGCCGATCTCCGTTCAAATGACGCACTCCGTCAATCAGGAGCTCTTTTACAAGCTCTACAACAATCCGCAGCCGGAAGA</genome_strand>
        <mrna_strand>GGCAACTCACAGTTGAGTGACCTTTCCTCCATTAGAGCTCCGAAGCAGCATCCTACTACTACTGGTGTGATTTTGCTTCAGAGCAAAACATACTAATCTCTACTGTTTCGCTCACTTCCACGGCTACAAATGGATATACTTTTCGCTCAGATCCAAGCCGATCTCCGTTCAAATGACGCACTCCGTCAATCAGGAGCTCTTTTACAAGCTCTACAACAATCCGCAGCCGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E299643" ref_strand="+" ref_description="SGN-E299643 [cLEW-1-C19]">
      <seq>atcccagggcagggcaattgctaataaaagaacttgaagagtttaggaccaatgcattagctgactcagtgaacaaacatcagtgtcggttaatactgcagaggatcaaatatgtcaccaaccactcggaaagcaagtgggctggggttggtgaagcaagaggagattatccatttagccatcacaagttaacagttcagttttatgacgcatctgctgctcaggaccgaaaactggaaggattggtgcacaaggctattttagagctttggaggcctgatcctagtgagctagctctattgctggctaaacgagtagattctactttactcaaggttcctcctagtgcatatactttgactggcagcagtgatccttgttatgttgaagcatatcatttgactgatccaagtgatggaagatttactctgcacttaaaggttttgaatttgaccgagatagaacttaaccgggtggatttaagagttggactttctggtggattgtatttcatggatggatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="43515" stop="46716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43815" g_stop="43950" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43951" i_stop="44426" i_length="476">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44427" g_stop="44730" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="440" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44731" i_stop="46330" i_length="1600">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46331" g_stop="46416" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="526" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E299643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43815" e_stop="43950"/>
          <exon e_start="44427" e_stop="44730"/>
          <exon e_start="46331" e_stop="46416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAGGGCAGGGCAATTGCTAATAAAAGAACTTGAAGAGTTTAGGACCAATGCATTAGCTGACTCAGTGAACAAACATCAGTGTCGGTTAATACTGCAGAGGATCAAATATGTCACCAACCACTCGGAAAGCAAGTGAGTTGGATGTTACTCTTTTCTCTCAGTTGATAATGGTAATATAATGTAGATCAGATGCTTCCCATATCTGATTACCCTGTAAAACGACTGAAATGAAGGGAAAACTCTTCATATAAATTTAAACTCCTCAAAATCATTTGGCTTCTATATCTCTATTCAGAATCCCTCATCTGTTTTGGAAAAATAAGCTCCTATGACTATGAGATTGTGGGAGTTAACCTGAAAGGATTAGATTGTAGTCTATTCCTAGTTAAACATTTAAACTTCTGCTGTCAGTATCCCCTCGGTTCCTCCAGGAAGTGGGGGGAGGTTTAGTGTTTAAAATAACATAATCTGTTTAAGCAAATATGAGGGGTTTAGTTGGTTGTAGGATACTTCATCAGAGAAGTTATAGACTTTCTTAGCAATTGGATGATACGTCATTCTCTAGAGAATTGTTGGATGATATTTCTATTTTCTTTTATCTTTCCAAGGTGGGCTGGGGTTGGTGAAGCAAGAGGAGATTATCCATTTAGCCATCACAAGTTAACAGTTCAGTTTTATGACGCATCTGCTGCTCAGGACCGAAAACTGGAAGGATTGGTGCACAAGGCTATTTTAGAGCTTTGGAGGCCTGATCCTAGTGAGCTAGCTCTATTGCTGGCTAAACGAGTAGATTCTACTTTACTCAAGGTTCCTCCTAGTGCATATACTTTGACTGGCAGCAGTGATCCTTGTTATGTTGAAGCATATCATTTGACTGATCCAAGTGATGGAAGATTTACTCTGCACTTAAAGGTCAAGATCTCTACTTCTCTTTGTTGTTATCAACTTATCGTTGATTTGTTTCTTCTGTGCGCTGTATCTTTGAAAGCATTTACAAAAGGTTTCTTGCCATTATGGCATCCTAGCAACCATGTCTTGGCTGTAGGACAATTGTGATCAGCTTCCTGGTGGTAGATGGTAGAATGCATATAGTATACTTCTGATGAACAAAGTTAAATCTTGCTGAGATATTTTTTTCATAAAGAAAAAAAAGAAAGAAATAAAATATCTTGCTGAGATATTTTGGGATGGAAGGACAGTTTCTCGTTACATTCTTACTGAAATGATGAAGAAGAGTTTGGATGTTTGGTTGGCAGGGAAGATGGGATGTATTATGTGGTGGTAAAGGCAAATCCAGCTTCATTAAATGAACATTTTGAATCATGCTGCAGAGCTTTAGGGATGTTGAGATACTTTTTTTTAAACATTCGAACTGGAAAGAAGAGTTTGGCTATAGTGCTTAAGACTAGTATAAAATGTACTGGTATAGACCAGTACAAAGTGCAACAAGGAACGTCAATTATTCTATAAAGTTATATCTACCTTTTTTTAGTAAAACTATTTTAAAAATATTTATCGTGTTTTGATAGGAAGAACTTTTAACGACACGTCTTTTCTTGCTTCAGTTAGACGAAACACAAATTTTGTGAATGCAATTGATACCTGTTACCTTAGTAACTAGCTATTCTATGTTTAGACAAAAACAGAGAAGAACAAACGGAATAGGCATTGAACTCAAACATGGGCATGAGTGGATTTTTTCCACATCCATTTGATCTTCAGTTCGATCAGCAATCATCGGAAGAAAAGTTTGATCAGCAACCCACCCCTGACCTGCATTAAATATTCAAAAATTGAAACCTGCCCCTGGCATAAGATCTCCCCACCATGCCCTGCATAAACTTTAACCAGCCCAGCTATGCATCCACCCCACCCCATTTCCATCTCTTCTTTTCACTATATATATTGAGCAATAATTTGCAAATACTTCTTTCCCTATTAAGGCAACTAGCTAGTGCTTTATAAAAAAAGTCTCATATGATATCTTTGGACAATTCTATGCAACCCTACCAATTGACTTAGATCTTGCTGTGTCTCATTTATAGTATCCCAATTATAGTTTTTTCATGAGTAATTACCAAATAGGAGTGAACTGCTGAATAAACACGCAAGCAAATAACATGATAACAAGTTCATTAGCGCATCTTGCTCTGAAATGCAAGGGAGGTGGACAACAAACCACAGATAACATGATTGGGAATGGTGGTTGGTTTACCTGTGAAGCTAGCTGCACTTACAATTAATTTGATCGATATGTTTGAGATCTTTGATGATTCATCAAATATCCCATAATTGGTTAGTGGGCCATGGGGGCAGCCTTATTGTTATGTGCTTACAAATATTTTGATGAAATATGAGTTGCATTGTTTTAGGAACCATTGGTCAGGTGAATCACTATTTATTTTTAATTTTCGTAAATTTTGGAGGCAGCATCCAGCAACAAATACAGTGTATTTGCACCTTTGCGTGAACAACATGGTTTTCATTGTACTAACAATCATAGTGTTTGCAGGTTTTGAATTTGACCGAGATAGAACTTAACCGGGTGGATTTAAGAGTTGGACTTTCTGGTGGATTGTATTTCATGGATGGATCTCC</genome_strand>
        <mrna_strand>ATCCCAGGGCAGGGCAATTGCTAATAAAAGAACTTGAAGAGTTTAGGACCAATGCATTAGCTGACTCAGTGAACAAACATCAGTGTCGGTTAATACTGCAGAGGATCAAATATGTCACCAACCACTCGGAAAGCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCTGGGGTTGGTGAAGCAAGAGGAGATTATCCATTTAGCCATCACAAGTTAACAGTTCAGTTTTATGACGCATCTGCTGCTCAGGACCGAAAACTGGAAGGATTGGTGCACAAGGCTATTTTAGAGCTTTGGAGGCCTGATCCTAGTGAGCTAGCTCTATTGCTGGCTAAACGAGTAGATTCTACTTTACTCAAGGTTCCTCCTAGTGCATATACTTTGACTGGCAGCAGTGATCCTTGTTATGTTGAAGCATATCATTTGACTGATCCAAGTGATGGAAGATTTACTCTGCACTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAATTTGACCGAGATAGAACTTAACCGGGTGGATTTAAGAGTTGGACTTTCTGGTGGATTGTATTTCATGGATGGATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550155" ref_strand="+" ref_description="SGN-E550155 [TUS-5-C2]">
      <seq>ttgctcgcacatcatccgtacagttgctggatttgagctctgttttgctgctaaaacctggtacggagggtttttaggcatgatggtttttggtgcaagtgaagtgagcagaaatgtggaccttggcgacgagacaaccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaagatagaaacaccaaagtaaactaattttttttgcttattttcttttgatatattttggtttgataattgatttagaagttagttgattgaaatgagtttcaagtttgtttttnatgtattctagtttatttcttttctcccagttttgntatttctatgtacctttttgaagccctgtaattattctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="47872" stop="49670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48172" g_stop="48208" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48209" i_stop="48677" i_length="469">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48678" g_stop="49370" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="729" r_length="692" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E550155" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48172" e_stop="48208"/>
          <exon e_start="48678" e_stop="49370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGCACATCATCCGTACAGTTGCTGGATTTGAGGTCAGTAACTTCTTTCTGAAGAGTTTTTTTGGTCTTCTGATTCTCTTTTGAAAGAGTTTTACTATGTTGGATTTAGAAGTCATCTTTAAGTTTTCAGGCACTTCTGATTGGGCATTTTACATATGAACTATTGGGAACCCCTAAACTGTCACCGTTTTGCATGTTCCATACATAAACTATTGAGTGTTCACCGATCCCCCTAAACTACCGTGAACTCAATATTCCAATCATCTCCCACACACCTCTCAACAAGTTATGCCAAACATTTTGCCCATATTCAACCAGTGATTTTTTTAATATAAAGGAAGCAATAGGCCAGGGGATAATAGGAACACCCAATAGTTCAGATATAAAACTCGCAAAATGACAATAGTTTGGGGTGGGGGTAACTTATTGTCTGAATTTATAATTGTTCAAATTCAATATATTCCATATTTTCTTTATCTCATTGCTGTTTGGTATTGAACAGCTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTT-ATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTA</genome_strand>
        <mrna_strand>TTGCTCGCACATCATCCGTACAGTTGCTGGATTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTNATGT-ATTCTAGTTTATTTCTTTTCTCCCAGTTTTGNTATTTCTATGTACCTTTTTGAAGCCCTGTAATT-ATTCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550407" ref_strand="+" ref_description="SGN-E550407 [TUS-5-C2](-)">
      <seq>ttgctcgcacatcatccgtacagttgctggatttgagctctgttttgctgctaaaacctggtacggagggtttttaggcatgatggtttttggtgcaagtgaagtgagcagaaatgtggaccttggcgacgagacaaccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaagatagaaacaccaaagtaaactaattttttttgcttattttcttttgatatattttggtttgataattgatttagaagttagttgattgaaatgagtttcaagtttgtttttatgtaattctagtctatttcttttctcccagttttgaagatctatgaccttttgaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="47872" stop="49653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48172" g_stop="48208" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48209" i_stop="48677" i_length="469">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48678" g_stop="49353" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="710" r_length="673" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E550407" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48172" e_stop="48208"/>
          <exon e_start="48678" e_stop="49353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGCACATCATCCGTACAGTTGCTGGATTTGAGGTCAGTAACTTCTTTCTGAAGAGTTTTTTTGGTCTTCTGATTCTCTTTTGAAAGAGTTTTACTATGTTGGATTTAGAAGTCATCTTTAAGTTTTCAGGCACTTCTGATTGGGCATTTTACATATGAACTATTGGGAACCCCTAAACTGTCACCGTTTTGCATGTTCCATACATAAACTATTGAGTGTTCACCGATCCCCCTAAACTACCGTGAACTCAATATTCCAATCATCTCCCACACACCTCTCAACAAGTTATGCCAAACATTTTGCCCATATTCAACCAGTGATTTTTTTAATATAAAGGAAGCAATAGGCCAGGGGATAATAGGAACACCCAATAGTTCAGATATAAAACTCGCAAAATGACAATAGTTTGGGGTGGGGGTAACTTATTGTCTGAATTTATAATTGTTCAAATTCAATATATTCCATATTTTCTTTATCTCATTGCTGTTTGGTATTGAACAGCTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCT</genome_strand>
        <mrna_strand>TTGCTCGCACATCATCCGTACAGTTGCTGGATTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTCTATTTCTTTTCTCCCAGTTTTG-AAGATCTATG-ACC-TTTTGAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228421" ref_strand="+" ref_description="SGN-E228421 [cLED-3-P20]">
      <seq>tgctcgcacatcatccgtacagttgctggatttgagctctgttttgctgctaaaacctggtacggagggtttttaggcatgatggtttttggtgcaagtgaagtgagcagaaatgtggaccttggcgacgagacaaccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="47873" stop="49478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48173" g_stop="48208" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48209" i_stop="48677" i_length="469">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48678" g_stop="49178" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="537" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E228421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48173" e_stop="48208"/>
          <exon e_start="48678" e_stop="49178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCGCACATCATCCGTACAGTTGCTGGATTTGAGGTCAGTAACTTCTTTCTGAAGAGTTTTTTTGGTCTTCTGATTCTCTTTTGAAAGAGTTTTACTATGTTGGATTTAGAAGTCATCTTTAAGTTTTCAGGCACTTCTGATTGGGCATTTTACATATGAACTATTGGGAACCCCTAAACTGTCACCGTTTTGCATGTTCCATACATAAACTATTGAGTGTTCACCGATCCCCCTAAACTACCGTGAACTCAATATTCCAATCATCTCCCACACACCTCTCAACAAGTTATGCCAAACATTTTGCCCATATTCAACCAGTGATTTTTTTAATATAAAGGAAGCAATAGGCCAGGGGATAATAGGAACACCCAATAGTTCAGATATAAAACTCGCAAAATGACAATAGTTTGGGGTGGGGGTAACTTATTGTCTGAATTTATAATTGTTCAAATTCAATATATTCCATATTTTCTTTATCTCATTGCTGTTTGGTATTGAACAGCTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAA</genome_strand>
        <mrna_strand>TGCTCGCACATCATCCGTACAGTTGCTGGATTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389750" ref_strand="+" ref_description="SGN-E389750 [TUS-4-C2]">
      <seq>ggcggccgctctacatcactgtctcgactggctgcaggttgctttccatcatccgtgcagttgctggatttgagctctgttttgctgctaaaacctggtacggagggtttttaggcatgatggtttttggtgcaagtgaagtgagcagaaatgtggaccttggcgacgagacaaccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaagatagaaacaccaaagtaaactaattttttttgcttattttcttttgatatattttggtttgataattgatttagaagttagttgattgaaatgagtttncagtttgtttttatgtaattctagtttatttcttttctcccagttttgntatttctatgtacctttttgaagcctgtaaattaattctattactacntaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="47869" stop="49678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48182" g_stop="48208" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="74" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48209" i_stop="48677" i_length="469">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48678" g_stop="49374" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="771" r_length="697" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="783"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E389750" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48182" e_stop="48208"/>
          <exon e_start="48678" e_stop="49374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCGTACAGTTGCTGGATTTGAGGTCAGTAACTTCTTTCTGAAGAGTTTTTTTGGTCTTCTGATTCTCTTTTGAAAGAGTTTTACTATGTTGGATTTAGAAGTCATCTTTAAGTTTTCAGGCACTTCTGATTGGGCATTTTACATATGAACTATTGGGAACCCCTAAACTGTCACCGTTTTGCATGTTCCATACATAAACTATTGAGTGTTCACCGATCCCCCTAAACTACCGTGAACTCAATATTCCAATCATCTCCCACACACCTCTCAACAAGTTATGCCAAACATTTTGCCCATATTCAACCAGTGATTTTTTTAATATAAAGGAAGCAATAGGCCAGGGGATAATAGGAACACCCAATAGTTCAGATATAAAACTCGCAAAATGACAATAGTTTGGGGTGGGGGTAACTTATTGTCTGAATTTATAATTGTTCAAATTCAATATATTCCATATTTTCTTTATCTCATTGCTGTTTGGTATTGAACAGCTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTACTAC</genome_strand>
        <mrna_strand>ATCATCCGTGCAGTTGCTGGATTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTNCAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGNTATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389487" ref_strand="+" ref_description="SGN-E389487 [TUS-4-C2](-)">
      <seq>gttttttaggcatgatgcttttgggtgcaagtgaagtgagcagaaatgtggaccttggcgacgagacaacccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaagatagaaacaccaaagtaaactaattttttttgcttattttcttttgatatattttggttggataattgatttagaagttagttgattgaaatgagtttcaagtttgtttttatgtaattcgagtttatttcttttctcccagtttgtaatgatctatgtaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="48409" stop="49630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48709" g_stop="49344" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E389487" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48709" e_stop="49344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAA-CCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAAT-TTCTATGTACCTTT</genome_strand>
        <mrna_strand>GTTTTTTAGGCATGATGCTTTTGGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTGGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCGAGTTTATTTCTTTTCTCCCAG-TTTGTAATGATCTATGTACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349782" ref_strand="+" ref_description="SGN-E349782 [cTOS-3-P13]">
      <seq>gacgagacaaccacaatgatgtgcaaatttgttatccgagcatcagacgaatccattaccaaggagattgcttcagattttcagggttggttggatgacctaactgatggcggtgttgaatacatgcctgaagatgaagtgaaggtaactgctgctgaaaatctaaagatttcaatggaacgaatagccttactaaaggctgcaagacctcgcccaaagtctccaaaatccgaggatgaagaagaggaggaagaagaagaagacgatgataacaataagaacgatgacatacttaacgttgaaggtggtaaaactaagggaccaactactttattcaagttgacagcagaagaagccgagcatcgagcacttcaagcagctattattcaagaatggcatatgctctgtaaagatagaaacaccaaagtaaactaattttttttgcttattttcttttgatatattttggtttgataattgatttagaagttagttgattgaaatgagtttcaagtttgtttttatgtaattctagtttatttcttttctcccagttttgtaatttctatgtacctttttgaagcctgtaaattaattctattactactacattttttgtctgttcaaatgaactttttatctaccctttgttttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="48468" stop="68576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48768" g_stop="49425" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49426" i_stop="49684" i_length="259">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49685" g_stop="49699" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="673" r_length="15" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E349782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48768" e_stop="49425"/>
          <exon e_start="49685" e_stop="49699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTACTACTACATTTTTTGTCTGTTCAAATGAACTTTTTATCTACCCTTTGTTTTCATAATTTAATTTCTTCTTCATAGTTCATGTTAGGATATTGTGAAATATTGACAGTTTGATAGCCAAAAAAATAATTTACTTCATAATATTAGATTAACAAATATCATTATATTATACATGTATATCCCAAATACTTGCTGCATACATCAAAATACTTATTTTTTTATATTTTCATGACAGAAAATAAATCATATGTATATCATAAAATTGTATATTATATTAATTTCTAAACATGGTATATATGAATTCAAAACAAACCTAGGAAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTACTACTACATTTTTTGTCTGTTCAAATGAACTTTTTATCTACCCTTTGTTTTCATA...................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713022" ref_strand="+" ref_description="SGN-E713022 [FB06CA07]">
      <seq>gggtaagtaggaggtgtttgaacaggtggtggagatgcaggaggaggttggtcatacgctgaacttggtagatgtttcaacagtgatgtcctatagacctttggttgatgatgcttttcataagacactttctgaaagggcctatatgtttgataaggatatttaggtacctcaggaggttttctctgtggacttgaagaagtctcgtagatagacaataaaggttctttaggtgtgtatacatatgcaggcttagtatacactcgaacagatgttctacctacttgcgaattctttgaaacatctccatttaaaagaagctcttgcgctccaacaacagagaaaaacaacacaagaaaaaatagaaaaacacgaaaatgcttgttaaacatagtcaatgagtttttcattgtatgaaagttaatagtcatagaggtgagctctaatgtattaacatttcttcacaatatatgactttgattgaacataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="52379" stop="51287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52079" g_stop="51588" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="507"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E713022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52079" e_stop="51588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAGTAGGAGGTGTTTGAACAGGTGGTGGAGATGCAGGAGGAGGTTGGTCATACGCTGAACTTGGTAGATGTTTCAACAGTGATGTCCTATAGACCTTTGGTTGATGATGCTTTTCATAAGACACTTTCTGAAAGGGCCTATATGTTTGATAAGGATATTTAGGTACCTCAGGAGGTTTTCTCTGTGGACTTGAAGAAGTCTCGTAGATAGACAATAAAGGTTCTTTAGGTGTGTATACATATGCAGGCTTAGTATACACTCGAACAGATGTTCTACCTACTTGCGAATTCTTTGAAACATCTCCATTTAAAAGAAGCTCTTGCGCTCCAACAACAGAGAAAAACAACACAAGAAAAAATAGAAAAACACGAAAATGCTTGTTAAACATAGTCAATGAGTTTTTCATTGTATGAAAGTTAATAGTCATAGAGGTGAGCTCTAATGTATTAACATTTCTTCACAATATATGACTTTGATTGAACATAGAA</genome_strand>
        <mrna_strand>GGGTAAGTAGGAGGTGTTTGAACAGGTGGTGGAGATGCAGGAGGAGGTTGGTCATACGCTGAACTTGGTAGATGTTTCAACAGTGATGTCCTATAGACCTTTGGTTGATGATGCTTTTCATAAGACACTTTCTGAAAGGGCCTATATGTTTGATAAGGATATTTAGGTACCTCAGGAGGTTTTCTCTGTGGACTTGAAGAAGTCTCGTAGATAGACAATAAAGGTTCTTTAGGTGTGTATACATATGCAGGCTTAGTATACACTCGAACAGATGTTCTACCTACTTGCGAATTCTTTGAAACATCTCCATTTAAAAGAAGCTCTTGCGCTCCAACAACAGAGAAAAACAACACAAGAAAAAATAGAAAAACACGAAAATGCTTGTTAAACATAGTCAATGAGTTTTTCATTGTATGAAAGTTAATAGTCATAGAGGTGAGCTCTAATGTATTAACATTTCTTCACAATATATGACTTTGATTGAACATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714357" ref_strand="+" ref_description="SGN-E714357 [FB11AH09]">
      <seq>cctccatcaagtccgtcaccgtctcctccagtttataagcctccaccaagtccacccccgcctcctcctggttataaacctccaccaagttcacgcgcctccacctccgccaagtccacctcctcctccaccaaggccacccccgcctcgtcctgtttacagacctccatcaagatccacgacctactcaacgaagcccaccacctccttcaacaagcccaccacctactcccggggataaacccccatcaagcccaccgcctcctccaccaagcacaccacctacccctgtctacaaacctccaccaagtccaccccaaagctcaccagggtatggaaatcctccaccttttggtcactattaaatgaataataaaactacttgtaacagttggatttgtttcaattgtattacgtatgtttctaaaaataatcttgtgatataaagtggaataatccaactccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="53785" stop="54848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54085" g_stop="54547" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="477"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E714357" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54085" e_stop="54547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCATCAAGTCCGTCACCGTCTCCTCCAGTTTATAAGCCTCCACCAAGTCCACCCCCGCCTCCTCCTGTTTATAAACCTCCACCAAGTTCAC-CGCCTCCACCTCCACCAAGTCCACCTCCTCCTCCACCAAGTCCACCCCCGCCTCCTCCTGTTTACAAACCTCCATCAAG-TCCACCACCTTCTCCACCAAGCCCACCACCCCCTTCACCAAGCCCACCACCTACTCCCGTCTATAAACCCCCATCAAGCCCACCGCCTCCTCCACCAAGCCCACCACCTACCCCTGTCTACAAACCTCCACCAAGTCCACCCCAAAGCTCACCAGGGTATGGAAATCCTCCACCTTTTGGTCACTATTAAATGAATAATAAAACTACTTGTAACAGTTGGATTTGTTTCAATTGTATTACGTATGTTTCTAAAAATAATCTTGTGATATAAAGTGGAATAATCCAACTCC</genome_strand>
        <mrna_strand>CCTCCATCAAGTCCGTCACCGTCTCCTCCAGTTTATAAGCCTCCACCAAGTCCACCCCCGCCTCCTCCTGGTTATAAACCTCCACCAAGTTCACGCGCCTCCACCTCCGCCAAGTCCACCTCCTCCTCCACCAAGGCCACCCCCGCCTCGTCCTGTTTACAGACCTCCATCAAGATCCACGACCTACTCAACGAAGCCCACCACCTCCTTCAACAAGCCCACCACCTACTCCCGGGGATAAACCCCCATCAAGCCCACCGCCTCCTCCACCAAGCACACCACCTACCCCTGTCTACAAACCTCCACCAAGTCCACCCCAAAGCTCACCAGGGTATGGAAATCCTCCACCTTTTGGTCACTATTAAATGAATAATAAAACTACTTGTAACAGTTGGATTTGTTTCAATTGTATTACGTATGTTTCTAAAAATAATCTTGTGATATAAAGTGGAATAATCCAACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203922" ref_strand="+" ref_description="SGN-E203922 [cLEC-17-F12]">
      <seq>aaaaagtagatttttattttttaatttcaaagaaaaaaaaaaggattaaaatggtggaaattatttcaccaggatttagattttatccaacagaagaagaattaatatctttttatttacataaaaagcttgaaggaaaaaagccagagcttgatagagtaattccagttgttactatttatgattttgatccttggcatcttccaaaatttcatggggaattgtgcatgggagatagagagcaatggtttttctttgtgccaagacaagaaagagaagctagaggaggaagaccatgtagaacaacaaattgtggttattggaaggcaactggttcaccaagttatgtttattcatcaaataataaagttattggagttaaaaaaagtatggtattttataaaggaaaagcaccaactggtaaaaaaactaagtggaaaatgaatgaatatagagctattcaagaagaagttaattcaactcttgctattccaaagttaaggcatgaaatgagtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="56953" stop="59532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57253" g_stop="57459" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57460" i_stop="58207" i_length="748">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58208" g_stop="58497" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="497" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58498" i_stop="59209" i_length="712">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59210" g_stop="59232" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="520" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E203922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57253" e_stop="57459"/>
          <exon e_start="58208" e_stop="58497"/>
          <exon e_start="59210" e_stop="59232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGTAGATTTTTATTTTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAAGTACGTATAACTTCGATATTATCAGTATAGTTTAACATGTTATACTCAATTTAATTATCGTTTTTATCGAAATTATTTATTAATATTTCATTCTGTTTTGACTTATGTGACTATCTTTTAAGTATACAAGTTCATTTCTTCATCTTCACATATTTCATGATTATAATTCTGAAGTTTAAGTTATATGTATCGATAGGGTTTATATCAAGTTAGTTCTTATTGTAGAAAAAAGATATTTACTTGTGATTAGTGTTTCATTTGTCTCAATTTATGTGGCATGTATTTTCGACCTAAGTACGTACACGAATTATCTTCTTCTATCTTCATTCTTGATCACCATTTTAATAAACCAATTTTTCATATATGGTTACAATTTTGAATTTAAGTTATATACACGAATAATATCGTCAATGTAATTTAATATGTTACTGTTTAATTTAACAGTATAGAGATTTAAACTCTTCTCTGAATACTCGACTTAGCACGAAATTTGAGAAAAAATAATTAGTAGTTTAAAATCAAACACAAAATTTTTTCTTGAAACCAGTTACAATAACAACATATATCTGTAACACTATATCTGAACAAAAGACATTGGTTGTATAAACATGTTCGACTGTATCATATAAATTGAGACAGATAGAAATATCTTATTATAAATGCCTTGATTATGCGACAAACTTTTGTTTTTCTATACTGTCAGTGCACAGAAGTTAAACGACGTGTAACGTTTTGTTTTTTTATGTAGAATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAGGTAATATTATATTTTACTATCATTACTACTTTTCTTTTTTTTTCGATATCTCTCGTATCTTTTTTAAATTTATTTAGCAAAAGAAAATGATTTTCTTAAGTCGAAGCAACAGGAATAAAAGTAAAATCTATATATATGCTGTTATTTTTAGACTCTAGATTTTACCTGTGAATAATTATAACGAAATATACATTATTGTTGTGTTAAAGTATTTGAAAAGGGAACTAATTCTTTTCTATTATCTTCAATTAAGATACTTGTAATCTTATTATGGATATATTATTGCAAACTAATCTTTATAATAAAAAAAATATTAATTTCAAATGGAATAAACATTCATGGTGGTTATATATTACACCCCAACTTTTATAATTATCCCTTTTTTTAATATTACACCCCAACCCCTAACTTTTATAAATATCCTTTTTTTCTTATGATTTATTTAATTATTTAACAAATTAAGTTTTAAACTCTATTTTATATATATATATATATATATATATATATATATAATGTTTTAACAATATTGTTTTTTCATGTGTATAATTATTTAGGCTATGTACTTTATTTAAATAAGCTCAATTTTTGAATGAGATAAATTTGACAGGTCAAAGCTGAATTGATAAATCAATAGATCGTAATTTACTCAACCTTATACGAGTTAAGACATGTTATAATTTGATGAGCTAATTTTGTCATTCGTTTATTGCAGTTAAGGCATGAAATGAGTTTATG</genome_strand>
        <mrna_strand>AAAAAGTAGATTTTTATTTTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGCATGAAATGAGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378997" ref_strand="+" ref_description="SGN-E378997 [TUS-1-F22]">
      <seq>ttttaatttcaaagaaaaaaaaaaggattaaaatggtggaaattatttcaccaggatttagattttatccaacagaagaagaattaatatctttttatttacataaaaagcttgaaggaaaaaagccagagcttgatagagtaattccagttgttactatttatgattttgatccttggcatcttccaaaatttcatggggaattgtgcatgggagatagagagcaatggtttttctttgtgccaagacaagaaagagaagctagaggaggaagaccatgtagaacaacaaattgtggttattggaaggcaactggttcaccaagttatgtttattcatcaaataataaagttattggagttaaaaaaagtatggtattttataaaggaaaagcaccaactggtaaaaaaactaagtggaaaatgaatgaatatagagctattcaagaagaagttaattcaactcttgctattccaaagttaaggcatgaaatgagtttatgtcgaatttacgttatatcgggaagttttcgagcgttcgatcggagaccaattgcaccaacaataacaagggaaccatcaaaatcaattataaatcaaggtggaatttctatggaaaatgtcactaaaatggaggncataagtgatgaaaacttatttatggaagaacaagattatgttaatcttaatcataatgatcaaatccctattattaatcaagaaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="56971" stop="59757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57271" g_stop="57459" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57460" i_stop="58207" i_length="748">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58208" g_stop="58497" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="479" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58498" i_stop="59209" i_length="712">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59210" g_stop="59457" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="727" r_length="248" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E378997" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57271" e_stop="57459"/>
          <exon e_start="58208" e_stop="58497"/>
          <exon e_start="59210" e_stop="59457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAAGTACGTATAACTTCGATATTATCAGTATAGTTTAACATGTTATACTCAATTTAATTATCGTTTTTATCGAAATTATTTATTAATATTTCATTCTGTTTTGACTTATGTGACTATCTTTTAAGTATACAAGTTCATTTCTTCATCTTCACATATTTCATGATTATAATTCTGAAGTTTAAGTTATATGTATCGATAGGGTTTATATCAAGTTAGTTCTTATTGTAGAAAAAAGATATTTACTTGTGATTAGTGTTTCATTTGTCTCAATTTATGTGGCATGTATTTTCGACCTAAGTACGTACACGAATTATCTTCTTCTATCTTCATTCTTGATCACCATTTTAATAAACCAATTTTTCATATATGGTTACAATTTTGAATTTAAGTTATATACACGAATAATATCGTCAATGTAATTTAATATGTTACTGTTTAATTTAACAGTATAGAGATTTAAACTCTTCTCTGAATACTCGACTTAGCACGAAATTTGAGAAAAAATAATTAGTAGTTTAAAATCAAACACAAAATTTTTTCTTGAAACCAGTTACAATAACAACATATATCTGTAACACTATATCTGAACAAAAGACATTGGTTGTATAAACATGTTCGACTGTATCATATAAATTGAGACAGATAGAAATATCTTATTATAAATGCCTTGATTATGCGACAAACTTTTGTTTTTCTATACTGTCAGTGCACAGAAGTTAAACGACGTGTAACGTTTTGTTTTTTTATGTAGAATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAGGTAATATTATATTTTACTATCATTACTACTTTTCTTTTTTTTTCGATATCTCTCGTATCTTTTTTAAATTTATTTAGCAAAAGAAAATGATTTTCTTAAGTCGAAGCAACAGGAATAAAAGTAAAATCTATATATATGCTGTTATTTTTAGACTCTAGATTTTACCTGTGAATAATTATAACGAAATATACATTATTGTTGTGTTAAAGTATTTGAAAAGGGAACTAATTCTTTTCTATTATCTTCAATTAAGATACTTGTAATCTTATTATGGATATATTATTGCAAACTAATCTTTATAATAAAAAAAATATTAATTTCAAATGGAATAAACATTCATGGTGGTTATATATTACACCCCAACTTTTATAATTATCCCTTTTTTTAATATTACACCCCAACCCCTAACTTTTATAAATATCCTTTTTTTCTTATGATTTATTTAATTATTTAACAAATTAAGTTTTAAACTCTATTTTATATATATATATATATATATATATATATATATAATGTTTTAACAATATTGTTTTTTCATGTGTATAATTATTTAGGCTATGTACTTTATTTAAATAAGCTCAATTTTTGAATGAGATAAATTTGACAGGTCAAAGCTGAATTGATAAATCAATAGATCGTAATTTACTCAACCTTATACGAGTTAAGACATGTTATAATTTGATGAGCTAATTTTGTCATTCGTTTATTGCAGTTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTCGAGCGTTCGATCGGAGACCAATTGCACCAACAATAACAAGGGAACCATCAAAATCAATTATAAATCAAGGTGGAATTTCTATGGAAAATGTCACTAAAATGGAGGCAATAAGTGATGAAAACTTATTTATGGAAGAACAAGATTATGTTAATCTTAATCATAATGATCAAATCCCTATTATTAATCAAGAAATTAA</genome_strand>
        <mrna_strand>TTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTCGAGCGTTCGATCGGAGACCAATTGCACCAACAATAACAAGGGAACCATCAAAATCAATTATAAATCAAGGTGGAATTTCTATGGAAAATGTCACTAAAATGGAGGNCATAAGTGATGAAAACTTATTTATGGAAGAACAAGATTATGTTAATCTTAATCATAATGATCAAATCCCTATTATTAATCAAGAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375868" ref_strand="+" ref_description="SGN-E375868 [TUS-15-E22]">
      <seq>ttttaatttcaaagaaaaaaaaaaggattaaaatggtggaaattatttcaccaggatttagattttatccaacagaagaagaattaatatctttttatttacataaaaagcttgaaggaaaaaagccagagcttgatagagtaattccagttgttactatttatgattttgatccttggcatcttccaaaatttcatggggaattgtgcatgggagatagagagcaatggtttttctttgtgccaagacaagaaagagaagctagaggaggaagaccatgtagaacaacaaattgtggttattggaaggcaactggttcaccaagttatgtttattcatcaaataataaagttattggagttaaaaaaagtatggtattttataaaggaaaagcaccaactggtaaaaaaactaagtggaaaatgaatgaatatagagctattcaagaagaagttaattcaactcttgctattccaaagttaaggcatgaaatgagtttatgtcgaatttacgttatatcgggaagtttttcgagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="56971" stop="59566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57271" g_stop="57459" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57460" i_stop="58207" i_length="748">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58208" g_stop="58497" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="479" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58498" i_stop="59209" i_length="712">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59210" g_stop="59266" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="537" r_length="58" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E375868" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57271" e_stop="57459"/>
          <exon e_start="58208" e_stop="58497"/>
          <exon e_start="59210" e_stop="59266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAAGTACGTATAACTTCGATATTATCAGTATAGTTTAACATGTTATACTCAATTTAATTATCGTTTTTATCGAAATTATTTATTAATATTTCATTCTGTTTTGACTTATGTGACTATCTTTTAAGTATACAAGTTCATTTCTTCATCTTCACATATTTCATGATTATAATTCTGAAGTTTAAGTTATATGTATCGATAGGGTTTATATCAAGTTAGTTCTTATTGTAGAAAAAAGATATTTACTTGTGATTAGTGTTTCATTTGTCTCAATTTATGTGGCATGTATTTTCGACCTAAGTACGTACACGAATTATCTTCTTCTATCTTCATTCTTGATCACCATTTTAATAAACCAATTTTTCATATATGGTTACAATTTTGAATTTAAGTTATATACACGAATAATATCGTCAATGTAATTTAATATGTTACTGTTTAATTTAACAGTATAGAGATTTAAACTCTTCTCTGAATACTCGACTTAGCACGAAATTTGAGAAAAAATAATTAGTAGTTTAAAATCAAACACAAAATTTTTTCTTGAAACCAGTTACAATAACAACATATATCTGTAACACTATATCTGAACAAAAGACATTGGTTGTATAAACATGTTCGACTGTATCATATAAATTGAGACAGATAGAAATATCTTATTATAAATGCCTTGATTATGCGACAAACTTTTGTTTTTCTATACTGTCAGTGCACAGAAGTTAAACGACGTGTAACGTTTTGTTTTTTTATGTAGAATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAGGTAATATTATATTTTACTATCATTACTACTTTTCTTTTTTTTTCGATATCTCTCGTATCTTTTTTAAATTTATTTAGCAAAAGAAAATGATTTTCTTAAGTCGAAGCAACAGGAATAAAAGTAAAATCTATATATATGCTGTTATTTTTAGACTCTAGATTTTACCTGTGAATAATTATAACGAAATATACATTATTGTTGTGTTAAAGTATTTGAAAAGGGAACTAATTCTTTTCTATTATCTTCAATTAAGATACTTGTAATCTTATTATGGATATATTATTGCAAACTAATCTTTATAATAAAAAAAATATTAATTTCAAATGGAATAAACATTCATGGTGGTTATATATTACACCCCAACTTTTATAATTATCCCTTTTTTTAATATTACACCCCAACCCCTAACTTTTATAAATATCCTTTTTTTCTTATGATTTATTTAATTATTTAACAAATTAAGTTTTAAACTCTATTTTATATATATATATATATATATATATATATATATAATGTTTTAACAATATTGTTTTTTCATGTGTATAATTATTTAGGCTATGTACTTTATTTAAATAAGCTCAATTTTTGAATGAGATAAATTTGACAGGTCAAAGCTGAATTGATAAATCAATAGATCGTAATTTACTCAACCTTATACGAGTTAAGACATGTTATAATTTGATGAGCTAATTTTGTCATTCGTTTATTGCAGTTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAG-TTTTCGAGCG</genome_strand>
        <mrna_strand>TTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTTCGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379368" ref_strand="+" ref_description="SGN-E379368 [TUS-1-F22](-)">
      <seq>aggcaactggttcaccaagttatgtttattcatcaaataataaagttatnggagttaaaaaaagtatggtatttataaaaggaaaagcaccaactggtaaaaaaactaagtggaaaatgaatgaatatagagctattcaagaagaagttaattcaactcttgctattccaaagttaaggcatgaaatgagtttatgtcgaatttacgttatatcgggaagttttcgagcgttcgatcggagaccaattgcaccaacaataacaagggaaccatcaaaatcaattataaatcaaggtggaatttctatggaaaatgtcactaaaatggaggcaataagtgatgaaaacttatttatggaagaacaagattatgttaatcttaatcataatgatcaaatccctattattaatcaagaaattaacatcaactcacacaacaacaagagggttaaaagtaatcttcatgatgagactctaattagtggttgggaacaatttaattggatgtaaactcgatgtttattctgggatctgattaaatttgatttatgttcgtataaaatttatcatagaaaaaatcactcgatattgaattttttccagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="58025" stop="59943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58325" g_stop="58497" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58498" i_stop="59209" i_length="712">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59210" g_stop="59643" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="607" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E379368" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58325" e_stop="58497"/>
          <exon e_start="59210" e_stop="59643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAGGTAATATTATATTTTACTATCATTACTACTTTTCTTTTTTTTTCGATATCTCTCGTATCTTTTTTAAATTTATTTAGCAAAAGAAAATGATTTTCTTAAGTCGAAGCAACAGGAATAAAAGTAAAATCTATATATATGCTGTTATTTTTAGACTCTAGATTTTACCTGTGAATAATTATAACGAAATATACATTATTGTTGTGTTAAAGTATTTGAAAAGGGAACTAATTCTTTTCTATTATCTTCAATTAAGATACTTGTAATCTTATTATGGATATATTATTGCAAACTAATCTTTATAATAAAAAAAATATTAATTTCAAATGGAATAAACATTCATGGTGGTTATATATTACACCCCAACTTTTATAATTATCCCTTTTTTTAATATTACACCCCAACCCCTAACTTTTATAAATATCCTTTTTTTCTTATGATTTATTTAATTATTTAACAAATTAAGTTTTAAACTCTATTTTATATATATATATATATATATATATATATATATAATGTTTTAACAATATTGTTTTTTCATGTGTATAATTATTTAGGCTATGTACTTTATTTAAATAAGCTCAATTTTTGAATGAGATAAATTTGACAGGTCAAAGCTGAATTGATAAATCAATAGATCGTAATTTACTCAACCTTATACGAGTTAAGACATGTTATAATTTGATGAGCTAATTTTGTCATTCGTTTATTGCAGTTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTCGAGCGTTCGATCGGAGACCAATTGCACCAACAATAACAAGGGAACCATCAAAATCAATTATAAATCAAGGTGGAATTTCTATGGAAAATGTCACTAAAATGGAGGCAATAAGTGATGAAAACTTATTTATGGAAGAACAAGATTATGTTAATCTTAATCATAATGATCAAATCCCTATTATTAATCAAGAAATTAACATCAACTCACACAACAACAAGAGGGTTAAAAGTAATCTTCATGATGAGACTCTAATTAGTGGTTGGGAACAATTTAATTGGATGTAAACTCGATGTTTATTCTGGGATCTGATTAAATTTGATTTATGTTCGTATAAAATTTATCATAGAAAAAATCACTCGATATTGAATTTTTTCCAGAAACT</genome_strand>
        <mrna_strand>AGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATNGGAGTTAAAAAAAGTATGGTATTTATAAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTCGAGCGTTCGATCGGAGACCAATTGCACCAACAATAACAAGGGAACCATCAAAATCAATTATAAATCAAGGTGGAATTTCTATGGAAAATGTCACTAAAATGGAGGCAATAAGTGATGAAAACTTATTTATGGAAGAACAAGATTATGTTAATCTTAATCATAATGATCAAATCCCTATTATTAATCAAGAAATTAACATCAACTCACACAACAACAAGAGGGTTAAAAGTAATCTTCATGATGAGACTCTAATTAGTGGTTGGGAACAATTTAATTGGATGTAAACTCGATGTTTATTCTGGGATCTGATTAAATTTGATTTATGTTCGTATAAAATTTATCATAGAAAAAATCACTCGATATTGAATTTTTTCCAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375867" ref_strand="-" ref_description="SGN-E375867 [TUS-15-E22](-)">
      <seq>tttttttttttttttttttttactttcataaaaattataaatattataataaaatattcttatcaaaatagtacaagttacatgtttgattttataatgaaatcatcctaatattttccctaaatttttccctttcttaacccttaagaaatagaaattaattttactatcgatagttatatcagacggataaaatctctctactttgttgtttcgagttcagtttctggaaaaaattcaatatcgagtgattttttttatgataaattttatacgaacataaatcaaatttaatcagatcccaaaataaacatcgagtttacatccaattaaattgttcccaaccactaattagagtctcatcatgaagattacttttaaccctcttgttgttgtgtgagttgatgttaatttcttgattaataatagggatttgatcattatgattaaaattaacataatcttgttcttccataaataagttttcatcacttattgcctccattttagtgacattttccatagaaattccaccttgatttataattgattttgatggttcccttgttatttgttggtgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="64304" stop="58980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60616" g_stop="60594" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.652"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60593" i_stop="59842" i_length="752">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59841" g_stop="59280" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="586" r_length="563" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E375867" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375867" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60616" e_stop="60594"/>
          <exon e_start="59841" e_stop="59280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCATTATGACTTAAGATATCATTTGTATTCATTGAATATTTTACATAGATATTAATACTAAATAGAGCATGAAAGAAACATAATTAATTTTATATAAAACTTTTAAAATGAATATTTAATTCTCTTTATTTTTACTCGACCAATATTCTTTAAAAAATAATAATTAATATGATTGCTTTTTTTCATTTTACCACAGTACATATTCATTTTATAAATTAATGTTTAATCTTGAATCTTGAAAAATGATTTAGAAATAAATAATTAATGATTTAATTAAAAATACTAATACTCCTATATATGTTTTTTATTTTTATTGACATGCTAATAAGTTAAAGATGAATATTTATTTTTAATATAATGATAAATAGAAATTAAAAAAAAGAGTAACATAATATAACTATTTTCAAAAATTAAGATTGATACGAACGGAGGAGTAAGATGATAAATGAATTATATGTCATTAAAATTGAACTAGTAAAAGTGATGTATTTTAAAATAAAAATATATTTAATGATAACAAAAATGATACGTAAAAATAATATTGAACAAATAAAACTAAACGAAAGAAATAGTTAGCGAAGGATAATTATTCTTTTTTTTTATTGGTAGACACTTTCCACGAAAGTTGTATTTAGATGAAATGTCGTATATAAGTCAAATTTCTTTTAGGGATACGTTTATTTCGATATTTTTTTAGCTATAATAATAAATATTATATTAAAAAATATATATAATATAATATAACATAACACAACACAAAATATTACTTTCATAAAAATTATAAATATTATAATAAAATATTCTTATCAAAATAGTACAAGTTACATGTTTGATTTTATAATGAAATCATCCTAATATTTTCCCTAAATTTTTCCCTTTCTTAACCCTTAAGAAATAGAAATTAATTTTACTATCGATAGTTATATCAGACGGATAAAATCTCTCTACTCTGTTGTTTCGAGTTCAGTTTCTGGAAAAAATTCAATATCGAGTGATTTTTTCTATGATAAATTTTATACGAACATAAATCAAATTTAATCAGATCCCAGAATAAACATCGAGTTTACATCCAATTAAATTGTTCCCAACCACTAATTAGAGTCTCATCATGAAGATTACTTTTAACCCTCTTGTTGTTGTGTGAGTTGATGTTAATTTCTTGATTAATAATAGGGATTTGATCATTATGATTAAGATTAACATAATCTTGTTCTTCCATAAATAAGTTTTCATCACTTATTGCCTCCATTTTAGTGACATTTTCCATAGAAATTCCACCTTGATTTATAATTGATTTTGATGGTTCCCTTGTTA-TTGTTGGTGCAATTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATAAAAATTATAAATATTATAATAAAATATTCTTATCAAAATAGTACAAGTTACATGTTTGATTTTATAATGAAATCATCCTAATATTTTCCCTAAATTTTTCCCTTTCTTAACCCTTAAGAAATAGAAATTAATTTTACTATCGATAGTTATATCAGACGGATAAAATCTCTCTACTTTGTTGTTTCGAGTTCAGTTTCTGGAAAAAATTCAATATCGAGTGATTTTTTTTATGATAAATTTTATACGAACATAAATCAAATTTAATCAGATCCCAAAATAAACATCGAGTTTACATCCAATTAAATTGTTCCCAACCACTAATTAGAGTCTCATCATGAAGATTACTTTTAACCCTCTTGTTGTTGTGTGAGTTGATGTTAATTTCTTGATTAATAATAGGGATTTGATCATTATGATTAAAATTAACATAATCTTGTTCTTCCATAAATAAGTTTTCATCACTTATTGCCTCCATTTTAGTGACATTTTCCATAGAAATTCCACCTTGATTTATAATTGATTTTGATGGTTCCCTTGTTATTTGTTGGTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705244" ref_strand="+" ref_description="SGN-E705244 [FA26CC07]">
      <seq>cgatgatattactgcaatctccctctagatatcttcttcagatcttgtacaatcgcgtccagagtcttgagaaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgcagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaagagcaaaaacatgcactcctgacaaagattgcatccgtgagggaggtagtaatgggagccccactgagggcagttttgaaacaacttgttacaaggacagttccttccgatctaggcaagcccgttgccctggttcatcgtcctaatgagtcttttttccttgtacctcaggcagacaaggtgaccgtcatatttcctatgagattcaatgattccatagatactgttctagcaacatctttcttacaggaatttgttgaggcaagacgaactgctggacttaataatgcccctccttgtttgtggtctccttctcctcctcaagaactgacagaagcttttacagaagcattatctgctaatgccggatttgttagttttgaaagctggacagaactgtctggaacctatcaacctttcatgcttatgtaaattatcatgttaagtgttctgaatgtttcatgcatactcggatgangcgtcangtggagtcattgatacaggcactttgacgtgccaaaccagatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71033" stop="63025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70733" g_stop="70670" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="131" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68582" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="339" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66919" g_stop="66750" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="509" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66237" g_stop="66160" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="587" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65288" g_stop="65156" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="720" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65155" i_stop="65054" i_length="102">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65053" g_stop="64990" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="784" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64989" i_stop="64201" i_length="789">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64200" g_stop="64144" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="841" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64143" i_stop="63351" i_length="793">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="63350" g_stop="63325" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="867" r_length="26" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E705244" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70733" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68582"/>
          <exon e_start="66919" e_stop="66750"/>
          <exon e_start="66237" e_stop="66160"/>
          <exon e_start="65288" e_stop="65156"/>
          <exon e_start="65053" e_stop="64990"/>
          <exon e_start="64200" e_stop="64144"/>
          <exon e_start="63350" e_stop="63325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAGGTCATTATGAGCTTGCTATAGTTGTGCTGGATGGTATTAGGATGTTAGTCCAAACTGCATTACTAGAAAAGTTTGGGGGGTTCTTACTCTCCTAAGGGTAATCAAGAAATAAATGTGATCGCATCCGCTTCATGTTGCATGTCTATTTTAGCAAATTCTTTTTAATATAAGTTGAGAACACTCATTAATAAGCACACGTTCAGCACACACACATGAAAAAAGGGTTTCATTCTTCTCAGTTTCTATTCAGTTGAAAATTTCAGTGTTTCCTTTCTCTTGGAGTTTTTTTTTTTTTTTTGTTATGTGCATGTTTTCATTATTCCTAAAACTAAAAGGGAAATTGTCAATTTTTCACTCGTTCTTCTAGCTACGAAGAGTACAATTTATTGTCTGAGTAGTGGCAAAATATTTCAAGGAAAAAAAGATATAACTGTATGTTATACTAGTATGCAGCATTCACTGTTGGCTCGAAGTTGGGCCTCCAAGCTTCTGAATTTCTGTTCTTGAATATCATAGTTCAGTAAGTTATCTCTTAACAAAAGGATGCAAGTCCGATGAAAGATCTGTAACAGGAAACAATTAAACAAGCTAGAGTTTTTCTCTACAAAAATCACCTATTCATGTGTAAAAGTTGGCAACCATGTGTTGCCCAAAAGGAAAGGGCAAAGTCATCTGAATGTTGAGTATAGGGATTAAATTAAAGAGCCAGTTGGTTCACATTATCCAGAAAGAAAGTTCAACTGTGGCTAGCAATGGTGAATCAAACTTATCCATTTTCCTTTGAATCCCAGTCTTGTTGTCTTGTACTCCAGAATTTTTTTGACTTGATCTTCAATTGGTGGCTTTAGAACATTTGTTCCCCAAGAACAAATTTTGTACTCAAAGGAGAGACGTAAGCACAAAACAATCAGAGGTACTCAATGAACGCAAAAAAGTATACAAGCAGGGGAATAACTCCCTTTGGAATAAAGAATAAAAAGCCCCTGCCAAATTTAACTCTGTGTGCCATGGTTCACCTTTGATCTGTGTTATATGTTTGGATGCACCTTAGGTTAAAGCTTTTTGTAATATACTTCCTCCATGTGTTTCCTTTCAGTCCATTGAGTCCATTTTCCGTAATGGAGAACTATATAGCTTAACTATTTACAACTTCTTGAATATTGCACCACTAAAAGTCTCATTGCCCCTACTCTTATTCTTATAAAGTATTTGACATTACCTAAGAATAACCATATCTGTACTGCTGGTGGTATTATGAGGTATCCACCAAATCCAGGAGGAAAATATCCTCCTGGATGTTGCTGGTGCGTAAAATAAAAAACCATATTTCTACTTTCAGCACATCCCTCCTCACAATCCAACGTAATTTCAGCTTGGCTGTTGATCTTTTAGCTGGTCGGATTCGAGCTCCTAAGTGCAAACTTGGGATTGTAGTACAAGTCAATATGTAGCATTACACTTTCTTTATGAGTTCGTATACTTATTATTTCAGTTTTAAATTTGTGAACAGTTCTATGAGAGTACTAATTTTCAGAAAATCTTTGATACTTCTGAACCTGGGTGATTGTCTATTTTTGCTGAAAGTTTCTGTTACAATCCTGTAATATACATTGCTTATGATATTTCTTTCTGATTGTAGAGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAGGTGAGTAATTTTATCTACTTTATAACATGCACAAGTGGTGAAAACTATAGTTTACCTCTATAGGCTTAAGTTCAATGAACATGAATCCATTTTAAAATGTTGTGGTGAAAAGTCAGTTTTTCACTATGAATCCATTTTCAAATTCTGCAGTGAAAACATTCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTTATCTTTATATCATCCCAATCCAAGAAATGAAAAGGTGTGAGAACTAATAGCTTCCAATAAAAGTAGTTTTATTAGAAAATTTCTTTTCATTTTGTTTTATGCTAACGGATTACTGTGGTAAACATTCTGATATTTGAACATCCAATTAAGCTTTCATTATGTGAAGACATTTAACTTGGGCCTAATTCAATTCCAAAAGCTAACTCTTGAGGAGAGGATTGCCTAAGACTATATAAAGAGACCACAATCATTTCCTCAACAAATGCGAGACTTAACACTCCCCAACATGCCCAAAGCTGGACAACTGAAGCGTGGATAACATAACACGGGGTCCAACATTGAGAAACACAAGAACATGGATTGATGAGTTTGGCTCTGATACCATGTTAAGAGATGGAACTTGGACCTAACTAAACCCTAAAAAAGCTAGCTCGTGGGGGAGGATTGCCCAAGATCTCATCAGAATACTACAACCAATTCCCTCGACCTGTGTGGGGCTTAACACATTACACATCCTATTAGTTTGAAGATTGTTTTGAAATTGGATACAATATGATTCGCTTCTTTGTAATCAATTTGCTTGTCACCTTCTTATAATCTTCAAGTAAGATTGAGGTTTTTATGCCATTTATGATACCAAAGAAACCTTATGTCTTCTGGGAAGACTTGAAAGTGCAATAGTTGTATATAGGTCATTGTCTTTGAAAAAAAAATCCAGCTCTTTCATTCAATTTTCTTGCAAGATTTTTGGTGCTTCTCTTTCCCATTGGGATATTAATCTTCATGTGCCTGAATGAGTAGGGTGGCTCACTCTTTGAAATATGATTCTCATCAGGAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCCCTCCTTGTTTGTGGTCTCCTTCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTGGTATAACAGATATTTTAACTAGTTTTTACATTGATATTTTGTGATTCCCATGACCAACTTATTTTTTGACACAGTAATTTTTTCTCGCCACGTGGAAGGCAGAAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAGGTGAGAATTCTAGACCAAAAGTTTCTTATCTATTGACCTAATTATGTCACATTAATGTGCTTCCATACTTGATGCAACACAATTCACGACGTCTTATGTCAGAAGCTCCCTAGTGAATCTTGAATATGTGCTTTGAAAGATTTTTGTAAATGATGAAGCCCTTCAACCTTATAGAAGGCCTTGCTGACTAAAGATAGAAAGCTTCACTCATAATTATATTCCTATATTTTAATAACTACTTTCTTCTATATTTCTGTGACTGTAAAATTTTAGACAAGGATTCTTCATTCTATTATAATTTTTTAAAGCTCTTCATTCTTTGAATCCATGAAATTAAAATTTCCCACACAGTGGATGCTTGGCATTATATATATATGTGACCTTTTATTCTTTTTTTGGAGAATATGAAGACTAAAATGCCACCACACATATATATCCCAATAGCTAAAGCTTTTTGTAATGATTTCTAATTCAGGCTTTTGTAACCAAACCTGTATAGTGTTCCTGGAGATTTAGTACTGGAATCTGTAGATCCTTGAAGCAGTTTATCTATGGAGGTCTTGAGTCTGTTAAAGTCTTGCAACTGCATCCACTGGGTTACTTGTGTATTTACTAACTTGGATTATTTCAAAGAAACGATCTTTCTCAAGTGAAGTGATCAATTTATGGCACATGTTGAGATTTTCATAACCATTACTGCATGCCTCAATAGCTTTTAATATGATAATATTATTTCTGTCAAACTTTATATCCGAAATTTAATCACTTCGATGTTTTTTCTGTAAACAGTGTTCTGAATGTTTCATGCATACTCGGATGAGGCGTCAGGTGGAGTCATTGATACAGGTAATTATCAATCTTTCATGATAAATTTAGAAACAATAGAATAGCAGGTTTATTGCATTCTGTAATACAAATGTATACTTGGCAATGACCACCTATAAAGAATGCTAATTGGGAAGTTTGCTAAATTTTATATCCGAGGTTGCTTTTTTTTTTTTTTTAACCTTTTTGCTGAAAGAATCATGGCAACTGTTTACTTTTAGCAAAAAGTTCACGCTTGTTCTGATGAGGCTGAATGTAGAGGTTTCTTATGGTTCTTCGTGCAATCCTATTAAAATGTCTGAGTTTGTTTCTCTTGGGCATTAGGTGATTTCCGTTTTGTGTTTTTCCATGAAGCATGTTCATCAAAGTCATTCTACGAAAAAGCTAAATGGTTAATGTCCAATCTTGTTCTTGTATGACCGGCACATTCATCTTAGTATCTACATCTCTGCAACTCTCATCTTGTCGATACGATGGAACTCTAGCAGCCCACATTCACTCTCATATAACATTACTGGTTTTATACTATATAATACTTGTTGCTTAAATGGCGTTTATGTGACCTTCCGAACACGATGCTTGATGATCCTAGTGCCTTTTAAGAACTGAAGTCCCACATGTATCTCAGCTTTAATTCAATTTTCCGTTTTGACATCACATTCTGCCTACTCAACTGCATTGTTTCGTCTTACTGCAGTTCCTTGTAACTAAAATGCCCCGGGACTCATTTCTTGAATTATTTTCTTGTTTAGCTGATCCTAGAACTTGTAAGTTTGTTGTTTGCGGGTTCACAACATTCATAACTCTTCTGCAGGCACTTGACCGTGCCAAACCAGATCC</genome_strand>
        <mrna_strand>CGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCCCTCCTTGTTTGTGGTCTCCTTCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTG......................................................................................................AAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTGAATGTTTCATGCATACTCGGATGANGCGTCANGTGGAGTCATTGATACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTTGACGTGCCAAACCAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325531" ref_strand="+" ref_description="SGN-E325531 [cTOC-15-K9]">
      <seq>aaaagagaaatcaaacttttaataacaaaacttcatcaaattgtccattcaagattctttgattttctgtttctttctaatttctttgattttcaaagaacccaaactgcgaatttgttttgtgaaagagatcgatgatattactgcaatctccctctagatatcttcttcagatcttgtacaatcgcgtccagagtcttgagaaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcacggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgcagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaagagcaaaaacatgcactcctgacaaagattgcatccgtgagggaggtagtaatgggagccccactgacggcagttctgacacaacttgttacaaggacagttccttccgatctangcaagcccgttgccctggatcatcgtcctaatgagtcttttttccttgtacctcaggcagacgatgtgaccgtcatatttcctatgagaatcaatgattccatagatactgttctagcaacatctttcttacaggaatgtgttgatgcaagacgaactgctggacttataatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71165" stop="64946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70865" g_stop="70670" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="263" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68582" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="471" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66919" g_stop="66750" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="641" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66237" g_stop="66160" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="719" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.684" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65288" g_stop="65246" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="761" r_length="42" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E325531" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70865" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68582"/>
          <exon e_start="66919" e_stop="66750"/>
          <exon e_start="66237" e_stop="66160"/>
          <exon e_start="65288" e_stop="65246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAGGTCATTATGAGCTTGCTATAGTTGTGCTGGATGGTATTAGGATGTTAGTCCAAACTGCATTACTAGAAAAGTTTGGGGGGTTCTTACTCTCCTAAGGGTAATCAAGAAATAAATGTGATCGCATCCGCTTCATGTTGCATGTCTATTTTAGCAAATTCTTTTTAATATAAGTTGAGAACACTCATTAATAAGCACACGTTCAGCACACACACATGAAAAAAGGGTTTCATTCTTCTCAGTTTCTATTCAGTTGAAAATTTCAGTGTTTCCTTTCTCTTGGAGTTTTTTTTTTTTTTTTGTTATGTGCATGTTTTCATTATTCCTAAAACTAAAAGGGAAATTGTCAATTTTTCACTCGTTCTTCTAGCTACGAAGAGTACAATTTATTGTCTGAGTAGTGGCAAAATATTTCAAGGAAAAAAAGATATAACTGTATGTTATACTAGTATGCAGCATTCACTGTTGGCTCGAAGTTGGGCCTCCAAGCTTCTGAATTTCTGTTCTTGAATATCATAGTTCAGTAAGTTATCTCTTAACAAAAGGATGCAAGTCCGATGAAAGATCTGTAACAGGAAACAATTAAACAAGCTAGAGTTTTTCTCTACAAAAATCACCTATTCATGTGTAAAAGTTGGCAACCATGTGTTGCCCAAAAGGAAAGGGCAAAGTCATCTGAATGTTGAGTATAGGGATTAAATTAAAGAGCCAGTTGGTTCACATTATCCAGAAAGAAAGTTCAACTGTGGCTAGCAATGGTGAATCAAACTTATCCATTTTCCTTTGAATCCCAGTCTTGTTGTCTTGTACTCCAGAATTTTTTTGACTTGATCTTCAATTGGTGGCTTTAGAACATTTGTTCCCCAAGAACAAATTTTGTACTCAAAGGAGAGACGTAAGCACAAAACAATCAGAGGTACTCAATGAACGCAAAAAAGTATACAAGCAGGGGAATAACTCCCTTTGGAATAAAGAATAAAAAGCCCCTGCCAAATTTAACTCTGTGTGCCATGGTTCACCTTTGATCTGTGTTATATGTTTGGATGCACCTTAGGTTAAAGCTTTTTGTAATATACTTCCTCCATGTGTTTCCTTTCAGTCCATTGAGTCCATTTTCCGTAATGGAGAACTATATAGCTTAACTATTTACAACTTCTTGAATATTGCACCACTAAAAGTCTCATTGCCCCTACTCTTATTCTTATAAAGTATTTGACATTACCTAAGAATAACCATATCTGTACTGCTGGTGGTATTATGAGGTATCCACCAAATCCAGGAGGAAAATATCCTCCTGGATGTTGCTGGTGCGTAAAATAAAAAACCATATTTCTACTTTCAGCACATCCCTCCTCACAATCCAACGTAATTTCAGCTTGGCTGTTGATCTTTTAGCTGGTCGGATTCGAGCTCCTAAGTGCAAACTTGGGATTGTAGTACAAGTCAATATGTAGCATTACACTTTCTTTATGAGTTCGTATACTTATTATTTCAGTTTTAAATTTGTGAACAGTTCTATGAGAGTACTAATTTTCAGAAAATCTTTGATACTTCTGAACCTGGGTGATTGTCTATTTTTGCTGAAAGTTTCTGTTACAATCCTGTAATATACATTGCTTATGATATTTCTTTCTGATTGTAGAGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAGGTGAGTAATTTTATCTACTTTATAACATGCACAAGTGGTGAAAACTATAGTTTACCTCTATAGGCTTAAGTTCAATGAACATGAATCCATTTTAAAATGTTGTGGTGAAAAGTCAGTTTTTCACTATGAATCCATTTTCAAATTCTGCAGTGAAAACATTCTTTTACTTGTTGAGCTTGGGTACTATAGCTAAATCAACCAATTCTTTTGACAATAACCCCATGCGGATATCTTTCAGCCTACTTTGCCTCATTGACTCCAGAGTGATCCTGGCATATCCAAGTTCTTCCAGTACTTGTCTCCTTGTTTGTTAAGTGTTTCTGAACTTGTATCTGTATTTAGTTCCAACAATCCCCCCCCCCCCCCCCCACACACACACCCCAAATTTGTTTCTTAATAGGCATGAATTTTTGGAATGCATAAACGATGCACATTGTTGTTATTTTAGTATCTATCTTTGAGGACCTATAAAGTATTTAGATTAAATGATGCAATGTACTGGCTTTTTGCAGGCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAGGTAAACTTCTACACGTTTTAATGTGTTCTTGTCCTTATCTTTATATCATCCCAATCCAAGAAATGAAAAGGTGTGAGAACTAATAGCTTCCAATAAAAGTAGTTTTATTAGAAAATTTCTTTTCATTTTGTTTTATGCTAACGGATTACTGTGGTAAACATTCTGATATTTGAACATCCAATTAAGCTTTCATTATGTGAAGACATTTAACTTGGGCCTAATTCAATTCCAAAAGCTAACTCTTGAGGAGAGGATTGCCTAAGACTATATAAAGAGACCACAATCATTTCCTCAACAAATGCGAGACTTAACACTCCCCAACATGCCCAAAGCTGGACAACTGAAGCGTGGATAACATAACACGGGGTCCAACATTGAGAAACACAAGAACATGGATTGATGAGTTTGGCTCTGATACCATGTTAAGAGATGGAACTTGGACCTAACTAAACCCTAAAAAAGCTAGCTCGTGGGGGAGGATTGCCCAAGATCTCATCAGAATACTACAACCAATTCCCTCGACCTGTGTGGGGCTTAACACATTACACATCCTATTAGTTTGAAGATTGTTTTGAAATTGGATACAATATGATTCGCTTCTTTGTAATCAATTTGCTTGTCACCTTCTTATAATCTTCAAGTAAGATTGAGGTTTTTATGCCATTTATGATACCAAAGAAACCTTATGTCTTCTGGGAAGACTTGAAAGTGCAATAGTTGTATATAGGTCATTGTCTTTGAAAAAAAAATCCAGCTCTTTCATTCAATTTTCTTGCAAGATTTTTGGTGCTTCTCTTTCCCATTGGGATATTAATCTTCATGTGCCTGAATGAGTAGGGTGGCTCACTCTTTGAAATATGATTCTCATCAGGAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCC</genome_strand>
        <mrna_strand>AAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAC......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGACGGCAGTTCTGACACAACTTGTTACAAGGACAGTTCCTTCCGATCTANGCAAGCCCGTTGCCCTGGATCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACGATGTGACCGTCATATTTCCTATGAGAATCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTTGATGCAAGACGAACTGCTGGACTT-ATAATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271315" ref_strand="+" ref_description="SGN-E271315 [cLEM-5-F18]">
      <seq>aaacttttaataacaaaacttcatcaaattgtccattcaagattctttgattttctgtttctttctaatttctttgattttcaaagaacccaaactgcgaatttgttttgtgaaagagatctatgatattactgcaatctccctctagatatcttcttcagatcttgtacaatcgcgtccagagtcttgagaaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgcagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaaggttctgcaagtttcctctttaagagcaaaaacatgcactcctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71153" stop="66598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70853" g_stop="70670" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="251" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68559" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="482" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68558" i_stop="66920" i_length="1639">
            <donor d_prob="0.499" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66919" g_stop="66898" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="504" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E271315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70853" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68559"/>
          <exon e_start="66919" e_stop="66898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAGGTCATTATGAGCTTGCTATAGTTGTGCTGGATGGTATTAGGATGTTAGTCCAAACTGCATTACTAGAAAAGTTTGGGGGGTTCTTACTCTCCTAAGGGTAATCAAGAAATAAATGTGATCGCATCCGCTTCATGTTGCATGTCTATTTTAGCAAATTCTTTTTAATATAAGTTGAGAACACTCATTAATAAGCACACGTTCAGCACACACACATGAAAAAAGGGTTTCATTCTTCTCAGTTTCTATTCAGTTGAAAATTTCAGTGTTTCCTTTCTCTTGGAGTTTTTTTTTTTTTTTTGTTATGTGCATGTTTTCATTATTCCTAAAACTAAAAGGGAAATTGTCAATTTTTCACTCGTTCTTCTAGCTACGAAGAGTACAATTTATTGTCTGAGTAGTGGCAAAATATTTCAAGGAAAAAAAGATATAACTGTATGTTATACTAGTATGCAGCATTCACTGTTGGCTCGAAGTTGGGCCTCCAAGCTTCTGAATTTCTGTTCTTGAATATCATAGTTCAGTAAGTTATCTCTTAACAAAAGGATGCAAGTCCGATGAAAGATCTGTAACAGGAAACAATTAAACAAGCTAGAGTTTTTCTCTACAAAAATCACCTATTCATGTGTAAAAGTTGGCAACCATGTGTTGCCCAAAAGGAAAGGGCAAAGTCATCTGAATGTTGAGTATAGGGATTAAATTAAAGAGCCAGTTGGTTCACATTATCCAGAAAGAAAGTTCAACTGTGGCTAGCAATGGTGAATCAAACTTATCCATTTTCCTTTGAATCCCAGTCTTGTTGTCTTGTACTCCAGAATTTTTTTGACTTGATCTTCAATTGGTGGCTTTAGAACATTTGTTCCCCAAGAACAAATTTTGTACTCAAAGGAGAGACGTAAGCACAAAACAATCAGAGGTACTCAATGAACGCAAAAAAGTATACAAGCAGGGGAATAACTCCCTTTGGAATAAAGAATAAAAAGCCCCTGCCAAATTTAACTCTGTGTGCCATGGTTCACCTTTGATCTGTGTTATATGTTTGGATGCACCTTAGGTTAAAGCTTTTTGTAATATACTTCCTCCATGTGTTTCCTTTCAGTCCATTGAGTCCATTTTCCGTAATGGAGAACTATATAGCTTAACTATTTACAACTTCTTGAATATTGCACCACTAAAAGTCTCATTGCCCCTACTCTTATTCTTATAAAGTATTTGACATTACCTAAGAATAACCATATCTGTACTGCTGGTGGTATTATGAGGTATCCACCAAATCCAGGAGGAAAATATCCTCCTGGATGTTGCTGGTGCGTAAAATAAAAAACCATATTTCTACTTTCAGCACATCCCTCCTCACAATCCAACGTAATTTCAGCTTGGCTGTTGATCTTTTAGCTGGTCGGATTCGAGCTCCTAAGTGCAAACTTGGGATTGTAGTACAAGTCAATATGTAGCATTACACTTTCTTTATGAGTTCGTATACTTATTATTTCAGTTTTAAATTTGTGAACAGTTCTATGAGAGTACTAATTTTCAGAAAATCTTTGATACTTCTGAACCTGGGTGATTGTCTATTTTTGCTGAAAGTTTCTGTTACAATCCTGTAATATACATTGCTTATGATATTTCTTTCTGATTGTAGAGCAAAAACATGCACTCCTGAC</genome_strand>
        <mrna_strand>AAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCTATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAAACATGCACTCCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271159" ref_strand="+" ref_description="SGN-E271159 [cLEM-22-L14]">
      <seq>ttgattttctgtttctttctaatttctttgattttcaaagaacccaaactgcgaatttgttttgtgaaagagatctatgatattactgcaatctccctctagatatcttcttcagatcttgtacaatcgcgtccagagtcttgagaaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaagccataaaagcagcatatggtgcagttgcacaaattcttgatcctccaagagatgggtttaatctcacacttaaactaaacttgtcaaaacttcccccagatgaaggttctgcaagtttcctctttaagagcaaaaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="71107" stop="68247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70807" g_stop="70670" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69054" g_stop="68988" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="205" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68789" g_stop="68559" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="436" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E271159" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70807" e_stop="70670"/>
          <exon e_start="69054" e_stop="68988"/>
          <exon e_start="68789" e_stop="68559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAGGTAAGCTTAAATCCATTTCACTTTTTTCACTTTTCCCTATTTTAAACACTTTTTTCGGGTCAATTTGTGGTTTAGGGTAGTCTGGATTGCATTATTGATTGATGTTTGCATAGTTTTTGCTCATTTTTGTGTATGATTATGAATATAAAAGTACTTGTATGTATCTGCTGGGATTAGCATAAGCATAAAGTTGCAATCTTTTAGTATTTTAAAAGAAAGTTAGGGTAGGAGAAGGGAAAGGGATTACAAAGTGTGGGAATCGAGAGCTTGGTGAAAGTTATGGTAGTCAGCTAATGAACTGAGCTAATAAGATTAAGCCTGGTTATGGAAGTGTGGATTGCATTATTGTTTATTTTTATAGGAGCTGATTGTATTGCAGCTAGATTGTTTAATGTTTGCATAGTTCTAGCTTATTTCTGTGCGTGGTTGTGAATATGAAAGAGTTTATATGCTTCTGCTGCATTAGCATTTGTTGTTGCACTTTCTTAAGCATAACGTTGCGATTTTTTTTCCCCGATAACCATGGTGTGTGAACCGGCTTTCGTGTACCTCCACTAAATCCACGGGATACGTTCCACTCCTCGCGCACCTTGACTAATTCCATGGGATATCCGCCACTTCCCACCACCAACAATTAATAGGTAACTTTATCCACCAAGGTTAGAACAAATGGGAAGAAATCACCAAGTATTTTTGTCTCTGTTGGGATTGAACATGAGATTTCATGGTTCTCAACCTACTTCATTGATCAGTAGGCCACACCCTGGGTGCTATTACATGGATTTGTTTGGAATGAGTATGTCCGATATTTAGCAAGCTCTAGTTGATTGAGTTACAGCTAGTATAGTTGATGTTTCTGTGTAGTTCCAACTCATTTCTGTGCTTGAGTACGAAGATGCGTTGCTAGGTATTAACATTTGTTGTTGCTCTAATTGAAGTGTAAAGATGTAATCTTTCAGTCATTAACACCCGTGATACATGGGTATATGGGTGAATGTTCTGTATGAGTATGTCCAATAGTTGGCAAGCTCTAGATGATCGCTATGTAGTGAAGCACGGAAATACTATGTGAATAATAACCATAATGTTGTAATGTGCATTTCCAAAAAATGCAAAAGTATTTCAACTTTTTCTACCTTTTGCATAACAGTTTGGAGAGTTGCATTTACTTCCTCGCATCCCAGGGAGCTGGAGTAGAGGATGAACATGAACTGCCTACACTATCAGTTACTGAAGTAGAATCAGCTTAATCAATCCAAAAGTGCTGCCAATAAAGTCACAAATGTTCAAAATTTGATTAATTGTTCAAGCATTAGCTACCGTGATATTAAAATTGATCATTTTAATTTGTTTACTTCCATTTAGTGATTTATCATGGGAACCCCTCCCTGTTAACAATATAGCATTCCGGTTCCTTTATTTGTCCAATTGCTCTTAGCTTATTCTTTCACCAAATGGTGTATGCTTAAAGTTCTAAAATATGACATACCTAGTTTTCTGATCCTTGAATCTTCCAAAAATTTGGCAGCCCTGTATTGCAAATAGAACCGATACCATTCCGTCATTTGTTTGAATAATCTGTAGTAGATGCTGACAGCACATCCTTATTTTGCAGTCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAG</genome_strand>
        <mrna_strand>TTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCTATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248181" ref_strand="+" ref_description="SGN-E248181 [cLEF-55-G2]">
      <seq>caaaggggttgaactggacagccaatgggttgaatttgatgatatccgttaccatattcagggttcagtgaaaaatccaaatgtcttgcttctttctgtatcattgcccataccacctccagaaaccgtcctctttggtggacttccacttggagcgctagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="69347" stop="68388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69048" g_stop="68988" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68789" g_stop="68688" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="163" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E248181" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69048" e_stop="68988"/>
          <exon e_start="68789" e_stop="68688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAGGTGAGTTATTATCATACAACAGTCCAATTTGATGATTTTGCTTTATTTTTTAACCAATTTTTTCACTTCAAAAGAAAAATGGAAGAACCACTAAACACATCATTATTTTAAAAATGTTAATTGAGATGGTCATATCTTATTTTGACATGCTGTCATCTATGATACATCTGGCTGGCTAATCTGTAACATATTCTGCAGGGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAA</genome_strand>
        <mrna_strand>CAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG......................................................................................................................................................................................................GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="78587" stop="77781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78287" g_stop="78081" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78287" e_stop="78081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCAATTTGAGAGCAAAGTGAGCTATTCCATAGACTATATAAG-AAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85266" stop="84247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84966" g_stop="84550" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84966" e_stop="84550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTATTCACGATAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCGGTTCCTATTCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTTTGACT-GAAATTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGGCTGCTAAAAAACTCTCTGT</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAATCCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTGAAAAACTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319481" ref_strand="+" ref_description="SGN-E319481 [cTOB-15-E21]">
      <seq>agtattcagtatcttctccgaccaatgagcaaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcaccgttcacgtgactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcagccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacgggaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85933" stop="87049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86233" g_stop="86749" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E319481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86233" e_stop="86749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACG</genome_strand>
        <mrna_strand>AGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E690193" ref_strand="+" ref_description="SGN-E690193 [LH_Ea02N23]">
      <seq>catagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctaaatttccccgtcgtagacgcggaactcatcctcaccgttcacgttactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcaaccgccgcgttcctgtcagggactccgtcttccggcgaggttaagcggacttcaacttgcacatcacggtaaggaattcgtctccgatgtagcgaagagggagatgttgctggatgctacggtggatataaaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgactgtaaacccggtttttcttgacgttattgatcaggaaaataaatcggctttagaggtctttgtgaaataacggatcagtgtgttggatcggcttattttgaattcatcaccactaaaaatgtactaagtaattaaaatatttaagttctatcgttgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85962" stop="87223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86262" g_stop="86931" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E690193" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86262" e_stop="86931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATCGTTACAATTCACTTC</genome_strand>
        <mrna_strand>CATAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTAAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTTACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAACCGCCGCGTTCCTGTCAGGGACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGTAAGGAATTCGTCTCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAAAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACTGTAAACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGG---A-------TCAGTGTGTTGGATCGGCTTATTTTGAATTCATCACCACTAAAAATGTAC-TAAGTAATTAAAATATTTAAGTTCTATCGTTGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E694033" ref_strand="+" ref_description="SGN-E694033 [LH_Ea02N23](-)">
      <seq>caaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcaaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctaaatttccccgtcgtagacgcggaactcatcctcaccgttcacgttactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcaaccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacggtaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgactgtagacccggtttttcttgacgttattgatcaggaaaataaatcggctttagaggtctttgtgaaataacggttcagtgtgttgtatcggtttattttgtattcatcaccactaaaaatgtaataagtaattaaaatatttaagttctatcgtgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85962" stop="87218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86262" g_stop="86916" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="665"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E694033" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86262" e_stop="86916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</genome_strand>
        <mrna_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCAAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTAAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTTACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAACCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGTAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACTGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAAT-A------A---CGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTA-ATAAGTAATTAAAATATTTAAGTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551322" ref_strand="+" ref_description="SGN-E551322 [TUS-54-F11]">
      <seq>caaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcaccgttcacgtgactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcagccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacgggaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgaccgtagacccggtttttcttgacgttattgatcangaaaataaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85962" stop="87099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86262" g_stop="86799" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E551322" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86262" e_stop="86799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCG</genome_strand>
        <mrna_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCANGAAAATAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688658" ref_strand="+" ref_description="SGN-E688658 [t3_tus_54_F11]">
      <seq>caaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcaccgttcacgtgactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcagccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacgggaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgaccgtagacccggtttttcttgacgttattgatcangaaaataaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85962" stop="87099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86262" g_stop="86799" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E688658" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86262" e_stop="86799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCG</genome_strand>
        <mrna_strand>CAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCANGAAAATAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253365" ref_strand="+" ref_description="SGN-E253365 [cLEG-24-A9]">
      <seq>aaagaaggaagtagaagaggagtaaaatggagctggacctccgccttcgtcggtgccgccgctgccgcagcaacggtgatgacactctcttcgaagccacgggatcctgattttcatctcatctccatcgatctcacttccttcaagctcaatttccccgtcgtagacgcggaactcatcctcaccgttcacgtgactaaccctaacgttacttcaatcaactactcctcaacagaaatgtcgattttctactccggcgatcacctcggttcagctcgtgtgaaagccggatctcagccgccgcgttcctgtcaggtactccgtcttccggcgaggttaagcggacttcaacttgcacatcacgggaaggaattcgtcgccgatgtagcgaagagggagatgttgctggatgctacggtggatatagaaggttttgcgaaggtgatgtggtgggaccataaattccgggtgcacgtggatagtcacgtgaccgtagacccggtttttcttgacgttattgatcaggaaaataaatcggctttagaggtctttgtgaaataacggttcaatccggttcagtgtgttgtatcggtttattttgtattcatcaccactaaaaatgtacttcagtaattaaaatatttaagttctatcggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="85963" stop="87223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86263" g_stop="86916" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="669"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E253365" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86263" e_stop="86916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</genome_strand>
        <mrna_strand>AAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAATCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729530" ref_strand="+" ref_description="SGN-E729530 [LA21BD05]">
      <seq>caaaacttgcagctcatagtgtaagcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89668" stop="96461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89968" g_stop="90098" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="180" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="272" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="424" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="471" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="505" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="672" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="769" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96161" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="770" r_stop="847" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E729530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89968" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTTGCAGCTCATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAA</genome_strand>
        <mrna_strand>CAAAACTTGCAGCTCATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692271" ref_strand="+" ref_description="SGN-E692271 [LH_Ea08E13]">
      <seq>tcagcttatagtgtaagcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgtcaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacctggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagactaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaactattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaagaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaagggctgggttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89677" stop="96487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89976" g_stop="90098" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="172" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="264" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="416" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="463" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="497" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="664" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="761" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96188" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="866" r_length="105" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E692271" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89976" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGG</genome_strand>
        <mrna_strand>TCAGCTTATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTCAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCTG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACTAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAACTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAAGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGGCTGGGTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697908" ref_strand="+" ref_description="SGN-E697908 [FA04CF11]">
      <seq>ccctttaagcttcaaagagcccaaaaatggcggagaagaatccattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgaccctggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcacaagtattgttccaccctactgcaattggttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89687" stop="95662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89984" g_stop="90098" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="164" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="256" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="408" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="455" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95362" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="583" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E697908" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89984" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGA</genome_strand>
        <mrna_strand>CCCTTTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCCATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACCCTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCACAAGTATTGTTCCACCCTACTGCAATTGGTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707644" ref_strand="+" ref_description="SGN-E707644 [FA33CD03]">
      <seq>gtaagcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcatggttggggggtgtatcgtgatcgacgtcctgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89688" stop="96513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89988" g_stop="90098" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="160" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="252" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="404" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="451" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="485" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="652" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="749" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96213" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="879" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E707644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89988" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTT</genome_strand>
        <mrna_strand>GTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325242" ref_strand="+" ref_description="SGN-E325242 [cTOC-1-E6]">
      <seq>aagcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatattcgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89690" stop="95006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89990" g_stop="90098" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="158" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="250" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94706" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="401" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E325242" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89990" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCC</genome_strand>
        <mrna_strand>AAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATTCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339104" ref_strand="+" ref_description="SGN-E339104 [cTOF-6-A12]">
      <seq>agcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttttttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatncactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagntggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89691" stop="96264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89991" g_stop="90098" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="157" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="249" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="401" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="448" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="482" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="650" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95964" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="728" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E339104" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89991" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGAT-CACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAG-TGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTA</genome_strand>
        <mrna_strand>AGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTTTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATNCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGNTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728248" ref_strand="+" ref_description="SGN-E728248 [LA17AG04]">
      <seq>gcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactgggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89692" stop="96456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89992" g_stop="90098" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="156" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="248" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="400" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="447" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="479" r_length="32" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="646" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="743" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96156" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="817" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E728248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89992" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACT-GGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGA</genome_strand>
        <mrna_strand>GCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGC--AAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261934" ref_strand="+" ref_description="SGN-E261934 [cLEG-58-K11]">
      <seq>gcttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89692" stop="95693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89992" g_stop="90098" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="156" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="248" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="400" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="447" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="481" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95393" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="606" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E261934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89992" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGAT</genome_strand>
        <mrna_strand>GCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729586" ref_strand="+" ref_description="SGN-E729586 [LA21CA07]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcatggttggggggtgtatcgtgatcgacgtcctgatttatataaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="96522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="398" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="445" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="479" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="646" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="743" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96222" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="882" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E729586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGT</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254376" ref_strand="+" ref_description="SGN-E254376 [cLEG-27-M5]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="95697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="398" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="445" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="479" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95397" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="608" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E254376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331705" ref_strand="+" ref_description="SGN-E331705 [cTOD-7-N19]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="95697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="398" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="445" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="479" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95397" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="608" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E331705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258719" ref_strand="+" ref_description="SGN-E258719 [cLEG-50-N10]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaaccctcagatgatggacttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="95685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="398" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="445" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="479" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95385" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="596" r_length="117" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E258719" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATT</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCCTCAGATGATGGACTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291682" ref_strand="+" ref_description="SGN-E291682 [cLET-6-O1]">
      <seq>ttcaaagagcccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcacaggagcttggagtagttattccagttaggttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89694" stop="94979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89994" g_stop="90098" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="154" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="246" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94679" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="370" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E291682" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89994" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTAC</genome_strand>
        <mrna_strand>TTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCACAGGAGCTTGGAGTAGTTATTCCAGTTAGGTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744788" ref_strand="+" ref_description="SGN-E744788 [GI|5262945]">
      <seq>ccaaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcatggttggggggtgtatcgtgatcgacgtcctgatttatataaggttcttttgacgctagatggcagcaacccagtcaagtgattcaagatgatctaagtactgcagattctcctgcctttttttttaaaaattataagaataaaaatatgaggactcaaatgagaaatttgtatttgagttttgttgtaatgtaactcgttaatttctgtaatctgctgcattctactttttatgtaaggcaaaatttgttgagtttgaatcctgcaacgtttcatcagtgcatcaatgtgcaagttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89704" stop="96774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90004" g_stop="90098" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="144" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="236" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="388" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="435" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="469" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="636" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="733" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="96084" g_stop="96467" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="1117" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1125" polyA_stop="1144"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E744788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1117</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90004" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTCATCAGTGCATCAATGT</genome_strand>
        <mrna_strand>CCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTCATCAGTGCATCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302236" ref_strand="+" ref_description="SGN-E302236 [cLEW-19-K4]">
      <seq>caaaaatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89705" stop="95697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90005" g_stop="90098" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="143" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="235" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="387" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="434" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="468" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95397" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="597" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E302236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90005" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</genome_strand>
        <mrna_strand>CAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253896" ref_strand="+" ref_description="SGN-E253896 [cLEG-28-G24]">
      <seq>aatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaagtattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89709" stop="95697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90009" g_stop="90098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="139" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="231" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="383" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="430" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="464" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95397" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="593" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E253896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90009" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</genome_strand>
        <mrna_strand>AATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264771" ref_strand="+" ref_description="SGN-E264771 [cLEG-71-B17]">
      <seq>aatggcggagaagaatcgattagtcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89709" stop="95626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90009" g_stop="90098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="139" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="231" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="383" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="430" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="464" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95326" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="522" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E264771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90009" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGC</genome_strand>
        <mrna_strand>AATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256707" ref_strand="+" ref_description="SGN-E256707 [cLEG-40-N19]">
      <seq>aatggcggagaagaatcgattattcaccgttgctgctttgcagttcgcctgtgccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcagaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89709" stop="95294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90009" g_stop="90098" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="139" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="231" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="383" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="430" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="94994" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="449" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E256707" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90009" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="94994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATG</genome_strand>
        <mrna_strand>AATGGCGGAGAAGAATCGATTATTCACCGTTGCTGCTTTGCAGTTCGCCTGTGCCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290672" ref_strand="+" ref_description="SGN-E290672 [cLET-10-I21]">
      <seq>tcaccgttgctgctttgcagttcgcctgtaccgacgatgtctccaccaacgtcgctaccgccgagagattggttagagctgctcatcagaagggtgcaaatatcatcctcatacaggagttgttcgagggctattacttttgtcaagcacaaaaggaggagttctttcatcgagcaaaaccatatccgggccatccaaccattgttaggatgcacaatcttgcaaaggagcttggagtagttattccagttagtttctttgaagaggcaaataatgcgcattacaattctgtggctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacccggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagacaaaatatgcaaaaattggagttgcaatttgctgggatcagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="89732" stop="95587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90032" g_stop="90098" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.285" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91302" g_stop="91350" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="116" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94358" g_stop="94449" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="208" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94556" g_stop="94707" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="360" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="407" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="441" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95269" g_stop="95287" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="460" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E290672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90032" e_stop="90098"/>
          <exon e_start="91302" e_stop="91350"/>
          <exon e_start="94358" e_stop="94449"/>
          <exon e_start="94556" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAGGTTTTTTTTTTTCGATTTCTTTTGTTGCACTTTTTGCGTTATTTGTGTTATGAATTTGAATTGAAATTCGATAGAACAGTAACTAAACTAGAATAGAGTCAATATATGAATTGAAACTAAAACTAAATAAATATAGCATAGATGAAGCTCTTGATCCCGATCTGAAATGAAAGAAGAAGAAGAAGACAGGATTAGAACTGCGTTGAAGAGGAGAGAAGAGGCAAGGAAGAAGTTGAGAATTGTTAGGATACCGGTTTTTTAATTTCTATTAGACTAGAAATAGGTTTATAAAATCCTATTTAGAATAGGAATAGGAATAGGAATAGGAATACAAATAGAATTAGGAATAGTAAATAGTATCCTACTTGGTAAAATGCAGACACAACAACAATTCATGATACGGTCACTCAACTGATAGTTATTATGTCACGAAGTCGCATTTTTAGATAATAAGTGATAGTTGGGTTTAAGTTTTTTCATTTCCAATAGAATTACAATTAATGACTATAGAATAAAGTTAGAAGACTTATGTTGTGTCCTCATATTTTATTCGTCGGTAGAGTTGTTTTATGTACTAAGAGGTTGATTTAATGTTATGAGTTTTTAGGCTTTCTTATAGCTCATTGAGAAAAGGGGGTTGGGATTTTGTGTTGTTGAGCATCTTCATAGTACCCAAAGATGTGACTTGTGGTGAATGAGAACCATGAGGTCTCGGGTATAAATTTGAGTGGAGGACAATTTATTAGGTGATTTCTTCCTATTTGTTCATGTTAAAGCCTTACTGGATGGATTTACCTAGTACCTAGTGAATGTAGCACTTATAGTGCAAATTAGTTGAGGTGTGTGCAAGTTGGTGACGACATCATGGTTATCGAGAAAAAAGTTATTGATCATCTATGTGTTGTTTAGATTTGTAACCATGAGGTCTCAGTTTTAAATTTGAGCGCAGGCAAAATTCCTAGGTGACTTTTTACTATTTATTCATGTTAAAGCCTTAGTGGACGGATTTACCTGGTACCTAGTGGAATGTAGCACTTATAGTGCAAATTATTTGAGGTGTGTGCAAGTTGGTAATGACACCATGATTATCCAGAAAAAAAAATGATTGATCATCTATTTGTTCTTTAGATTTGTAAAAGGGAATCAAGTTTGTCTTTTTGGTGGCATTTACATTTCTGGCTCTAAGATATTCCTTCGACGCAGATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAGGTAACAAACAGCCCAACTTTGGAATATCTAGCTACTACACAAAAGAACCATGGATGAAATACATTTTCTTTCTTTGGCGGAAGATAATTATTGATTAGGTTTACCTTTCTCAAGCAACAATATTCACTTCTCTCGGTGAGAACATTTCGTCAGCATTTTTATCCTTTGATCACATGCTGAAACTCTTATCTCTAGATTTTTGTTTGCCTTCGGGTTGTCTGATTGCCTCCTTTATGTGGTAGTCTATGCTGAGGCTGTTGTAAGTTATTTCAAAAGCTGAGTGGTCCGTAATGGATCGGAGAAGCGGAGACATTTGGTCTGTTTTATGCATTATTAGAATGTAACCAAAATGGAATCTAGTCATGTAAACATCATGTTATGACACTAGGAGTTGCTTGGCTAGTCGTCTATTTGAATTCCAGTTCTTAATCCAACTGTCCCTTAGGCTTGGGAGTAGATTTACTTCTGTCAGTATAATATAACTCTGAGCGAGTTAGGCTGAATTTCGGTAGGTCAAAACAAGCTTTGTTAATAAATGGTTGTGTCAATGACCCGCCCAAAAGTTACTTGGGCTGAAACAGGCTAAAAAGGGGGTCATAACCCAATCCATCCAATTTCTTTTTTATGACTATATACAGCATATCAAACAAAAAATGTCTTTTTAAAAATATTTTGTCCTGGTTTCTCATGGGTCACATTAGGCTACATGCCAGCCTTTTAGATGGTTTGAATTGGGTGGGATCAACATGGGCTAAATTTTCCACCCCCAACTCCAAGCAATTTTGGGTCTCCATTTACCAACTCAAACTCTGTTAAATGTGACAGAATAGTCATTAAGCTTTGTTATCTCAAACTGAAAGTATTTGTGTTTAACAGAGTGATAACTCTGCAATTCAAGTGTATAGAAAATTATATGTACAATTGAGTTTGTCAGTATCATTCCTAAGCTACAACTTTCCAAATAGTAAATTACTCCTAATTTTCTGCTAATAAAGGTTTTAATCAGTCCAATGAAACAGAAGCTAAATAATATGGGTTAGTGGAGAACTGTCTTTATTCAGGATATCGAGAACAGTGTAAAAATACCTAAACCCAAAAACATAGAAAGGGAGGAGATAATTAACAACTATACATTAGACCCTTATACTAATAGAATGAGAAAATGTTTAAAACGTATCAAAAATAAGTATTTATCGTGACTAGCACGAGGCATGTGCTTGCCCCAAAACTAGATGAGAATCTTCACATAATAATATATAAGCTGAGGTAAGGGGGTTGAAGGAAGAACCTGATAAGTAAGTCGATAGGAATTGCTAGAAATCAAAAGGCATGATGTTCAGAACTGAAGTTTCATTGATCGATTACAGTGGGACGATGATTCTCCTTATTGGTCCTGCATGTTATCCTCTTTGGGTTGTCCCTGTCAAGCATTCTTTTTTCTGTCTAAATATATCATATGTTTTTGTGTAAAAATTCCTTCGCTTTCTCCACTTGATTTATGTTTCAGTTGCTAATCTAATCATTTCCTTCTCCTGCACCCCCTTCTTTTAAGCATGTGATGCTTTATCCTGAAATTTCGAAGATTTCCATTTCCTGATAGTTCCTGGCTCCTTCTTAACCTCTTTCATAGCTCGTGTGCTTCTTGGTCCATACAGTGCAAGTGTGGAAACTTAATTGAATGCAGAGAGAGCAAGTATCATTGATGGCCAGGACGGACGGATAACAATGGCTAGTCTTTAGTAGCGTGGAATCATTTCACAGTCACAACAGATTTGTCCTGTTATTATATTACTAGCTCTTTTCTGTGGACAGATGTGAGAATGAAGGTTAATCTCGGAAGTAGGAAAGTGTTTTTAGATGGAACAACCATGAGAATGTCATCGACCATTCTGTCACATTTAATGGAGCTTGTTAAATGATAGCAAACACACATAGTTTTTTGTAAACTTAAGTATGCGACCAATGATTGCCATCAAAGCAAGACATATAGACTGTAGATTTGTGGGCAGGTCCCTCAGCTACTAAACTTAGGAGTTTAAATATGATCTTAGTTTAAATATGCTCAAAATCGTACTGCAAGGAAAACTTAAAGGACCATTTAAGTTAGAAGCTCGTTTTTGTAATTTCCTCTTGGCTACTTTCTTGTTCATACTAATTGTAACAAAATAGTTAAAGAACTCTGTTTGCGACTTCTGTTCCAGAGTGGAGGTATCTTCTGAAGATGTCTTTGGTACTTGAATTGATTTCAACTTTGCTTCAAACAGCCTTGAATTAGGAATGCTCATTTGGTTTAGCTGTTAGATTCAAGAGAATATGATTGGAAAGTAGCTAAACGGAGAAGAACTTAAAATTGGTTCATAACAAATTCGAGTCAGAGACAGCTGCAAATGTTCCAGTTTCCTTCCATTAAGTAATTAGATTTACCAAAGGTTTTCGTCAGCAATCTTCCATTTTTAAGTTGGTCCAAGACTGTTTCCGAAGTTTCATCATCACACAGTCAATGAGGACCCTAGTTGTACAAGAGTATTGTACTGACTGATTGAATTCGAGATTAGTTAAAGCTGTGGAAATGAAATAAATGTTTGCGGTGTTGGTTTTTATAAATGCAGCAGAGTGTACTGATTTCCTTGAATCTTATAGGGCACGTCTAACTCTTCCGTTATATAATATTATTTTCCTTTGCTATAAGTATCACTGGGAGTGAGGCTAACAAAAAGAACAGGATTTATAGCCAAGGTGTTGACAATTTTATGTAGGCATTGGTAACAAATACCTATAGAAAGAGGGAAAAAGTTGTATGTGATTGTTTACTGTCAGGAGTTCTCAGATCAACTTGAAATGTCCTATCATTTCTCTAATTAGCGAGTTGCAAATGATATTTTTATGGAGTCAGGGTGATGCACTTGAAGTTCGTTGTTCTGTGAACTTGTACTTTTTGAAGCTATTTGGTATTCATCTGCCATGTCTGCAGTACAGTTCCATTGATACTTTCTGGTTTACATCTCAGGAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAGGTGGAATTCGGATTGCTTCCGGAGTTTTATTGCAGGGTTCTTTTGCATAAATGTCAAGATTCCAATAACAACTTGACTTTTTCTTCTTCTATGTGCATGTTTGTAGGATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTG</genome_strand>
        <mrna_strand>TCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG..........................................................................................................GATGCACAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACAAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696111" ref_strand="+" ref_description="SGN-E696111 [LH_Ea08E13](-)">
      <seq>gctataattgatgctgatggcacagatcttggactttacaggaagtcccatattcctgatggacctggttatcaggaaaagtattacttcaatcccggtgacactggttttaaggtattccagactaaatatgcaaaaattggagttgcaatttgctgggatcagtggtttcctgaggctgctcgagctatggcacttcaaggtgcagaactattgttctaccctactgcaattggttctgaacctcaagatgatggacttgattctcgggatcactggaggagggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaagaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcttggttggggggtgtatcgtgatcgacgtcctgatttatataaggttcttttgacgctagatggcagcaacccagtcaagtgattcaagatgatctaagtactgcagattctcctgccttttttttttttgaaatcataagaataaaaagatgaggactcaaatgagaaatttgtatttgagttctgttgtaatgtaattcgttaatttctgtaatctgccgcattctactttttatgtaaggcaaaatttgttgagtttgaatcctgcaacgtttaatgagtgcatcaatgtgcaagttgatggtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="94341" stop="96781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94641" g_stop="94707" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94830" g_stop="94876" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="114" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94976" g_stop="95009" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="148" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95269" g_stop="95435" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="315" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="412" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="96084" g_stop="96467" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="798" r_length="386" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="812" polyA_stop="825"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E696111" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94641" e_stop="94707"/>
          <exon e_start="94830" e_stop="94876"/>
          <exon e_start="94976" e_stop="95009"/>
          <exon e_start="95269" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCGGTTAGTAAACTTGGAAGGACATTCCAAATTCATTGTGCTACTTGTCATTATTCTGTTAGATTTCCCTCAAGCACTTCCTTCAATACTCCTTTTTCATCCTCACGAATTGTTTCTCTCTGCAGGTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAGGTAACAAATACAGGAGACTGAAATCCTATTAACATATTGTGACAGCTATCTTTTCCTGCTTTCCCCTTTTCTCATGGATGTTATGGTGATCATAAACAGGTATTCCAGACAAAATATGCAAAAATTGGAGTTGGTAAGAAATATATATTTTTATAATTGTTCTTTGGGTTTCATTATGTTCTCTACCTTTGATGAGCATTTCGATGCATAGGAGTATGATAAAAGTTGTGCTGCTGTGGCAAAAGACCTTATATCTCCAAAAATTACTTAGACAGGCTTCACGTTGTAATTTTAAATTTTAGTAAAGCGGACAAAGATTCTCTTGTTGTAAAATACAGTGAAGACGGAAAATATACCTGTCATAGTATTGACTGTTATTAAATTCTGTCCAGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCC--TTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTCATCAGTGCATCAATGT</genome_strand>
        <mrna_strand>GCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCTG..........................................................................................................................GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG...................................................................................................GTATTCCAGACTAAATATGCAAAAATTGGAGTTG...................................................................................................................................................................................................................................................................CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAACTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAAGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCTTGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTTTTGAAATCATAAGAATAAAAAGATGAGGACTCAAATGAGAAATTTGTATTTGAGTTCTGTTGTAATGTAATTCGTTAATTTCTGTAATCTGCCGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTAATGAGTGCATCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301940" ref_strand="+" ref_description="SGN-E301940 [cLEX-3-G10]">
      <seq>ggtgatgcaaggacacgctggtgctaatgtggtacctttagtggcgtcaaaccgcattggaaaggagataattgagacagagcatgggaatagtgagataacattctacggctactctttcatagcaggccccactggggagttggttgcagctgccggtgataaagaggaagctgttcttgtagctcagtttgatctggacaaaatcaagtccaaaaggcatggttggggggtgtatcgtgatcgacgtcctgatttatataaggttcttttgacgctagatggcagcaacccagtcaagtgattcaagatgatctaagtactgcagattctcctgcctttttttttaaaaattataagaataaaaatatgaggactcaaatgagaaatttgtatttgagttttgttgtaatgtaactcgttaatttctgtaatctgctgcattctactttttatgtaaggcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="95105" stop="96723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95405" g_stop="95435" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95888" g_stop="95984" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96084" g_stop="96423" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="468" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E301940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95405" e_stop="95435"/>
          <exon e_start="95888" e_stop="95984"/>
          <exon e_start="96084" e_stop="96423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGCAAGGACACGCTGGTGCTAATGTGGTAAGTTTCTTTTTCTTCTTCTCTTTCATTTTGACTTTTTTTGTTAAGAATGGTAAGTCAAAAAGAAAGTATATGCTGACATGAAAGGGATAGAGTAATGGGTTTCTTCTCCAGAAGTATAGGTCAATGGCTGTCATTTCTGTATCCCATTTGGATTATATTTTGTTTAATCTTACACATGCATATGGACATGTACCACTTTGTTATTAGCCAATTCTTAACAGCACTGTAGCATTTTCTGTGCACCATTCTCAAGATAGGTGTCTGCTAAGAAAATGATTCATTTTTATTAGGGCTATAACAATTTAGACGTTCCAGGTTTTGCCAAACTCAAATATTGGTGTTTTCATTTTACAAGACCAAAACAAGAATGTGACTTTTAAATTGCTGTTTTGGTTTGATTCACTTTTGTTCAGTCAGAATTTAAATAACCTTAAATTTATCGTGTCCAGGTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAGGTAAGCTTGATAGAAAGCTATAGGCTATAGCTTATAAATGAAAAACATCTTCTGCCTTGTGTTTTAAGTTGGCTGTGAACCTGGTTTAAAAATGAACAGGCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAAT</genome_strand>
        <mrna_strand>GGTGATGCAAGGACACGCTGGTGCTAATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG...................................................................................................GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305402" ref_strand="+" ref_description="SGN-E305402 [cLEX-15-M1]">
      <seq>aactagtctcgagttttcttttttttttttttttatttcaaactcaacggattttgccttacataaaaagtagaatgcagcagattacagaaattaacgagttacattacaacaaaactcaaatgcaaatttctcatttgagtcctcatatttttattcttataatttttaaaaaaaaaggcaggaaaatctgcagtacttaaatcatcttgaatcacttgactgggttgctgccatctagcgtcaaaagaaccttatataaatcaggacgtcgatcacgatacaccccccaaccatgccttttggacttgattttgtccagatcaaactgagctacaagaacagcttcctctttatgaccggcagctgcaaccaactccccagtggggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110498" stop="95782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97131" g_stop="97108" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.542"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97107" i_stop="97045" i_length="63">
            <donor d_prob="0.897" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97044" g_stop="97035" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="34" r_length="10" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97034" i_stop="96440" i_length="595">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.927" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96439" g_stop="96082" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="392" r_length="358" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E305402" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97131" e_stop="97108"/>
          <exon e_start="97044" e_stop="97035"/>
          <exon e_start="96439" e_stop="96082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATCTAAAGTTCTCTGAAAAGTAAAAACAATCTCCTACACAGAAATAATCTTTCATCAAATTATATGCTTTGTTACTATGCAGATTATTTGTGGCCAGAGGTGTTTCCGAGTGGCTATAGCAATTGGATCATTTATTCCCCAAAAAATAGTTCCAAACTTTTTTTTCTGATAAGATAAATGAATTTATTGACTTAAGGGGGAATTCTAACTTAGTAGAATGGAAAAAAACAACTGAATAAAAGGCAAAGAAAACTAGCATCATTATCTTAGTATAACAACACAACCATTGTAATCCCACAAGTCCCAAGTGGGGTTTGGGGAGGGTAAGGATGTATGCAGACCTTATCCCTACCGTTGTGGGGTAACATCACGATATCAGCAGAAGCATAAAATATGTGGTAAAGCACATCAAAACGTACCTTCTGGCGACAAATGGATCTGGAACAGGATTGAGAGACCCGAAAATGCAACTATCCTTTCTAAATATCAAGAAAGTGATAGGATGATAGATATTTGTGGACCACCAGATACAGCTCCAGCGTTTTTCAGAGATATATTGAGAAACTGACATCCCAAGCTTTATATCTGGAAAAGGTTCTTTAAGGTGGGATCAATATGCTTACTGCTAGTTGAATGTGACAAAAAACCATCAAACTTGCACATTGATGCACTGATGAAACGTTGCAGGATTCAAACTCAACAAATTTTGCCTTACATAAAAAGTAGAATGCAGCAGATTACAGAAATTAACGAGTTACATTACAACAAAACTCAAATACAAATTTCTCATTTGAGTCCTCATATTTTTATTCTTATAATTTTTAAAAAAAAAGGCAGGAGAATCTGCAGTACTTAGATCATCTTGAATCACTTGACTGGGTTGCTGCCATCTAGCGTCAAAAGAACCTTATATAAATCAGGACGTCGATCACGATACACCCCCCAACCATGCCTTTTGGACTTGATTTTGTCCAGATCAAACTGAGCTACAAGAACAGCTTCCTCTTTATCACCGGCAGCTGCAACCAACTCCCCAGTGGGGCCT</genome_strand>
        <mrna_strand>AACTAGTCTCGAGTTTTCTTTTTT...............................................................TTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAAACTCAACGGATTTTGCCTTACATAAAAAGTAGAATGCAGCAGATTACAGAAATTAACGAGTTACATTACAACAAAACTCAAATGCAAATTTCTCATTTGAGTCCTCATATTTTTATTCTTATAATTTTTAAAAAAAAAGGCAGGAAAATCTGCAGTACTTAAATCATCTTGAATCACTTGACTGGGTTGCTGCCATCTAGCGTCAAAAGAACCTTATATAAATCAGGACGTCGATCACGATACACCCCCCAACCATGCCTTTTGGACTTGATTTTGTCCAGATCAAACTGAGCTACAAGAACAGCTTCCTCTTTATGACCGGCAGCTGCAACCAACTCCCCAGTGGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544567" ref_strand="-" ref_description="SGN-E544567 [TUS-66-P12](-)">
      <seq>ttttttttttttttttttttttttacaatgaaggaaatagacatccatccacattgtgcaagtgaagatcaaatgatattcgcgttctagtttttagaaaagcagaaagtataatgtacacatccaaactgtaaccagttaaacaaaatcaaccaaagtaaactagatcaacatacatgaactattatagcattcacattttttatcacaaccaaacagaaactgttaccatcttagtcagcacagaaagcctgctcagttcagttctctattcaccgccaagcttcagtcctctctgtcattgaatttatacggatcaagttgcttattccttttgatttactgtcatttcccacagactgaaccacggttgactctagatcaagtttcacaacatcctttgtctgattagaatcactcgattggcctatcctttgtgtgacctcttcaagatttggagtttttgtcacacaggcttttcttgccttggtattaacatgaataggagtttcacaagacacactgtcatcggattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="13847" stop="102502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100528" g_stop="100547" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100548" i_stop="101685" i_length="1138">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101686" g_stop="102202" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="537" r_length="517" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E544567" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544567" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="100528" e_stop="100547"/>
          <exon e_start="101686" e_stop="102202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTTTGGTATTTTTTTTATCGGAAAGTGAGTGGTGGTTTTCTTACTTATTTGTTGGTGTTTCGATAAGTAAATAAAAAATATTGTATCGAAATATGAATGTATAGTCTAGGCAAAGGGATAGGGTGAGAAGGAGACAATTTGTGTTTGAATGTTATTTATGGAACTGTTTTTACTATTTTAATCGGAAAAATTATTTCCTTTTTTTATTTTGAAGAAACTTGTTTTTTTATCTAGACTATTTTTTCAGAAATTTTGGCCAGTAAAACATAGGGGAAATTGAAAATATATTTTCCAGACCTTTGTAGCAAATACACCATAACTCTAATATCTGTAACTCCAATGACGCATTCGAAAATATGGTCTAGTGATTAATAAATTAGGTGACAAAAAAATACTAGGTGATTTCTTCTCATTTACCTAAGTTTTGGTGGGCTAGACGTATCATGGTAAGGTAGCAAGTCCTCGGTGAAGTAGTCGAGGTGCACCAAATAGTCGATAGATTATTGAGATACACACAGGTTGACTAGAAAGCTATTATATTATCAATAAAAGAAACTAATACTCCTTCCTTAATCTCAAGTAAATTTGAAATCAACTATATAATATTTGAGTAAATGTCAAAGTTGTCTATATTTTCTACTATCCTAAAAATCATATTGGACCTAAAAGTAAACACACTAATTTATTTGTTTACAAGATACATCAACTGAGAAAAATCAAAGTGGTCTCTACTATGGATCCTTAGCCACTTACATATATATGCAAGACAGCACTGAAAAAAGCTCAGCAACTTGAAGTAGTGATCCATGAGTAACTTTGATGTTGAAAGATTATACTATACTAGCACATCCTGTGTTTGATTTCTAGATACATCCTAAACTAGTACTTGAACTAGCTGAGTATATTCCCAGTGGATCCAATGTGAGGCAACTACATAGTTGCACAAAAGTACTGGTCCCAACTTCCAACCAACTAAGGGTGTTTTTCGTCGATCAGATTTTGATAATATGAGGAGGTTATAGCATCTGAACTTTCAGAAATGTTATCTTGGTTGTGGTCCTGGAAGCATCAACATTTCTAACATGCATACCAAAGACAACTCATCACAAGAAAAAAGTAAAAGGAGTGATCCTCCGCGAAGATTAGACAATGAGGTATACAATGAAGGAAATAGACATCCATCCACATTGTGCAAGTGAAGATCAAATGATATTCGCGTTCTAGTTTTTAGAAAAGCAGAAAGTATAATGTACACATCCAAACTGTAACCAGTTAAACAAAATCAACCAAAGTAAACTAGATCAACATACATGAACTATTATAGCATTCACATTTTTTATCACAACCAAACAGAAACTGTTACCATCTTAGTCAGCACAGAAAGCCTGCTCAGTTCAGTTCTCTATTCACCGCCAAGCTTCAGTCCTCTCTGTCATTGAATTTATACGGATCAAGTTGCTTATTCCTTTTGATTTACTGTCATTTCCCACAGACTGAACCACGGTTGACTCTAGATCAAGTTTCACAACATCCTTTGTCTGATTAGAATCACTCGATTGGCCTATCCTTTGTGTGACCTCTTCAAGATTTGGAGTTTTTGTCACACAGGCTTTTCTTGCCTTGGTATTAACATGAATAGGAGTTTCACAAGACACACTGTCATCGGATTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACAATGAAGGAAATAGACATCCATCCACATTGTGCAAGTGAAGATCAAATGATATTCGCGTTCTAGTTTTTAGAAAAGCAGAAAGTATAATGTACACATCCAAACTGTAACCAGTTAAACAAAATCAACCAAAGTAAACTAGATCAACATACATGAACTATTATAGCATTCACATTTTTTATCACAACCAAACAGAAACTGTTACCATCTTAGTCAGCACAGAAAGCCTGCTCAGTTCAGTTCTCTATTCACCGCCAAGCTTCAGTCCTCTCTGTCATTGAATTTATACGGATCAAGTTGCTTATTCCTTTTGATTTACTGTCATTTCCCACAGACTGAACCACGGTTGACTCTAGATCAAGTTTCACAACATCCTTTGTCTGATTAGAATCACTCGATTGGCCTATCCTTTGTGTGACCTCTTCAAGATTTGGAGTTTTTGTCACACAGGCTTTTCTTGCCTTGGTATTAACATGAATAGGAGTTTCACAAGACACACTGTCATCGGATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320200" ref_strand="+" ref_description="SGN-E320200 [cTOB-21-M15]">
      <seq>atgaatttcttgaggacactcatcgaaaagactttaaaagatagagaagattcccttgttgaaccagattctgcctctaacctagaccggcctgatgagtatggtcatcaaagtccaccacaattctctctggagaactccgatgaatcaaacgaactgactgagcaggtgttcactgttgaagaacctgattcagccagcgcttctgaatctaatagagtagataacatcactgatgatgaatatcttagttatgcaacttcttcagaggaatccgatgacagtgtgtcttgtgaaactcctattcatgttaataccaaggcaagaaaagcctgtgtgacaaaaactccaaatcttgaagaggtcacacaaaggataggccaatcgagtgattctaatcagacaaaggatgttgtgaaacttgatctagagtcaaccgtggttcagtctgtgggaaatgacagtaaatcaaaaggaataagcaacttgatccgtataaattcaatgacagagaggactgaagcttggcggtgaatagagaactgaactgagcaggctttctgtgctgactaagatggtaacangtttctgtttggttgtgataaaaaatgtgaatgctataatagttcatggtatgttgatctagtttacttgggttgattttgtttaactgggtacagntttggatgtgtacattatactttctgcttttctaaaaactagaacgcgaaatatcatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="102771" stop="101433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102471" g_stop="101733" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E320200" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102471" e_stop="101733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATTTCTTGAGGACACTCATCGAAAAGACTTTAAAAGATAGAGAAGATTCCCTTGTTGAACCAGATTCTGCCTCTAACCTAGACCGGCCTGATGAGTATGGTCATCAAAGTCCACCACAATTCTCTCTGGAGAACTCCGATGAATCAAACGAACTGACTGAGCAGGTGTTCACTGTTGAAGAACCTGATTCAGCCAGCGCTTCTGAATCTAATAGAGTAGATAACATCACTGATGATGAATATCTTAGTTATGCAACTTCTTCAGAGGAATCCGATGACAGTGTGTCTTGTGAAACTCCTATTCATGTTAATACCAAGGCAAGAAAAGCCTGTGTGACAAAAACTCCAAATCTTGAAGAGGTCACACAAAGGATAGGCCAATCGAGTGATTCTAATCAGACAAAGGATGTTGTGAAACTTGATCTAGAGTCAACCGTGGTTCAGTCTGTGGGAAATGACAGTAAATCAAAAGGAATAAGCAACTTGATCCGTATAAATTCAATGACAGAGAGGACTGAAGCTTGGCGGTGAATAGAGAACTGAACTGAGCAGGCTTTCTGTGCTGACTAAGATGGTAACA-GTTTCTGTTTGGTTGTGATAAAAAATGTGAATGCTATAATAGTTCAT-GTATGTTGATCTAGTTTACTTTGGTTGATTTTGTTTAACTGGTTACAG-TTTGGATGTGTACATTATACTTTCTGCTTTTCTAAAAACTAGAACGCG-AATATCATTTGAT</genome_strand>
        <mrna_strand>ATGAATTTCTTGAGGACACTCATCGAAAAGACTTTAAAAGATAGAGAAGATTCCCTTGTTGAACCAGATTCTGCCTCTAACCTAGACCGGCCTGATGAGTATGGTCATCAAAGTCCACCACAATTCTCTCTGGAGAACTCCGATGAATCAAACGAACTGACTGAGCAGGTGTTCACTGTTGAAGAACCTGATTCAGCCAGCGCTTCTGAATCTAATAGAGTAGATAACATCACTGATGATGAATATCTTAGTTATGCAACTTCTTCAGAGGAATCCGATGACAGTGTGTCTTGTGAAACTCCTATTCATGTTAATACCAAGGCAAGAAAAGCCTGTGTGACAAAAACTCCAAATCTTGAAGAGGTCACACAAAGGATAGGCCAATCGAGTGATTCTAATCAGACAAAGGATGTTGTGAAACTTGATCTAGAGTCAACCGTGGTTCAGTCTGTGGGAAATGACAGTAAATCAAAAGGAATAAGCAACTTGATCCGTATAAATTCAATGACAGAGAGGACTGAAGCTTGGCGGTGAATAGAGAACTGAACTGAGCAGGCTTTCTGTGCTGACTAAGATGGTAACANGTTTCTGTTTGGTTGTGATAAAAAATGTGAATGCTATAATAGTTCATGGTATGTTGATCTAGTTTACTTGGGTTGATTTTGTTTAACTGGGTACAGNTTTGGATGTGTACATTATACTTTCTGCTTTTCTAAAAACTAGAACGCGAAATATCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344514" ref_strand="+" ref_description="SGN-E344514 [cTOF-14-B14]">
      <seq>gagattggatggcctactaatgtgcgtcatgttgcacatgttacctttgataggttcaatggatttttgggtctccctgttgaatttgagccagaagtttccagaagggcccccagtgctagtaccactgtatttggagtgtcaacggagtccatgcaattgtcttttgactcccgtggtaatagtgttccaactattctacttctaatgcaaaggcgtttgtatgctcaaggaggtctacaggcagaagggattttcagaataaatgctgaaaacagcgaggaggagctggttagggagcaattaaaccgtggaataattcctgatggcattgatgtacattgtctggcaggtctcattaaggcttggttcagggaactcccaagtggggtgttggataccctttctcctgagcaggtcatgcaatgccagtcagaagaggactgtactgcactcgtgagacttctgccacagacagaagctgctctgctggattgggctatcaatctcatggctgatgttgtcctggaggaacaccgaaacaagatgaattcgcgcaatgtcgcaatggtgtttgctcctaatatgacacagatggcagatccattgactgcactgatgtatgctgttcaagtaatgaatttcttgaggacactcatcgaaaagactttaaaagatagagaagattcccttgttgaaccagattctgcctctaacctagaccggcctgatgagtatggtcatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="107200" stop="102061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106900" g_stop="106779" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106778" i_stop="104816" i_length="1963">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104815" g_stop="104695" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="243" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104694" i_stop="104577" i_length="118">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104576" g_stop="104457" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="363" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104456" i_stop="103098" i_length="1359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103097" g_stop="102867" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="594" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="102866" i_stop="102514" i_length="353">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102513" g_stop="102361" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="747" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E344514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106900" e_stop="106779"/>
          <exon e_start="104815" e_stop="104695"/>
          <exon e_start="104576" e_stop="104457"/>
          <exon e_start="103097" e_stop="102867"/>
          <exon e_start="102513" e_stop="102361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGGATGGCCTACTAATGTGCGTCATGTTGCACATGTTACCTTTGATAGGTTCAATGGATTTTTGGGTCTCCCTGTTGAATTTGAGCCAGAAGTTTCCAGAAGGGCCCCCAGTGCTAGGTACATTGTTAACTTTTTGATTCTTGATGAGCTTTAATCTTAATTGTTGTGCATAAAATTGTGAACATTGTGGTTTTGGTATTGTAGTCTTGATACCCTTTGAGCTGACAGGATTTAGTGATTCATCATTTTGCTAATGTGGAATCAAATGCTTAAGTATTATGCTATTTGTTTCCTATTTTTTCATTGCCATTGTGAAATTTTGGAGGAGTATATATAGATAGATAGACAGAATTTATAGTCAGTTACTGGAGAGCCACTTTCTGAATACAACTTAGGTTTGTGTTGAAAGTTATAAGAGGATAGTTGTGTTTTCTGCTGTTTCATAACTTTCAGTTTTATGTATACTGTTTACGTTTGACAGAAAATCCAAACTCACCTCAATATGGAGTTTGTGTAGTATTTAGTATCTTACCTGAACTGCTTTTCTAAATGGAATTCAGTTTATAAGGGACTACTTATTACTATTTAATAGAGATTGAAGAAGTCTTCTATTTCCTTATGCTGCATTTATACATGGTTTTTAGTGCATTTTGATTTTCCATGCAGCACACCTTTTTACTTGATAAGCTCTATGTTATTTGTCCATTCAGGCAGATTCCATTTGATACATCATTCAAACTTTATCTAATGTTATGTGGGAGTAATGTTAGGTTGCGAAAGTCCAATATATCTACCAGATGAGTGTCACTGAAATGCTCATGTTAAACATGGATATATGGTAATACTAGATTAGAGACAATTAGAAAGGACCACATTAGAAGGTCCAAGCAACAGTCATCAGGGATAAAATGAGAGAAGGTCGCTTGAGGTTACTCGGAGCCCTCCCACGTTCATAAGAGTTGTGAATTCTTTTCAGTTTAGCGAATGAGTCTTTTTATCTCGTCATTTGCATCCAACAAGAAGTTCCATCGGACCCTTTCTAGTTTTATCGATCATCTCATTCCTCCCTTTTGCCCAGTACCTTTTCTGCCACTTCACTGAACTTTTTGAACTCTTTTAATCTGCACTGATTATCCTTCTGTATGAAAAATCTAACATTAGACTTGGATAAGTTTTTGAGATCAACCAGATCTTGCAGTTGAAAACAGAACACTCGAGCAACTTGTTTAGTGTTCTCCACTCCTCACACTTAGATGACTTCACTTGTTTAAGTTGATCTCTAATAGCGTCACTGGTTGAAAATACATTATTGCCTTAATGTTGGCTTTATGCCACTTCAATATTGAAAAACACTAGCGTATTGTATATAAACAATGAACGGGAAATCCTCCCCCCTTGCTCCAAAACCCCTCAGGTAAAACACTATTGCAGCTTTACATACTTGATTTCTTTTGATATGTTTTACTTGAACTGAGGGTCTATTTCAAACAACTTCTCTCTCTTCACAAGGTAGGTGTAAGGCTTGCTACACACTGCCCTCCTCAGACCCCACTTGTAAGATTACATTGGCTATGTTGTTGTAGTTCATTATATAGAAAACTTCTCTATAAGTTTTACTCACTGTTCTGGTTTTGATTTTAATCCAATATCAGTGGAACTGGAGTCCTACTATGGTGAAGATATTGTATCATCTTGTTAGATTTGACATGTAATGTATGACCTGAGTGATTTAAACAAAGTGTAATCCAGGGTTCATTAAATGCTTTAAGATTTTGGTTAATTTTGTGCCAACATATTCTGCTCCAGCTATTAGACCTTAAGGATACCTTGTAAACCTTGAAAATTATTAGGATCTCTTAAAAGAATCTTCATGAAAAGAAATTGCTAAAAAGGAAAAAAAAAAGGAACTGCTAAAAATGCACCGTTCTGGTATACAAGTCACTTGAACTTTCTGAGGACAGAATATTTTTAGTAAAAATTAGTTATGACATTACTACTATTACATGTGATGCAAATTTAGACTCTTCTAGAAGTATTGTTGCATCTTGCTGTGCTAATAATTTTGATATTCCATCTGTAGTACCACTGTATTTGGAGTGTCAACGGAGTCCATGCAATTGTCTTTTGACTCCCGTGGTAATAGTGTTCCAACTATTCTACTTCTAATGCAAAGGCGTTTGTATGCTCAAGGAGGTCTACAGGTACATACTGTGTGTTGTCTCGGCTTTCGAATATTTAAAATCTGGCATTTACAATCAAGGATAGGTGCTGCCACTTGTAAGTTCATTATTATATCCGAGTTGGTTTTTATGTGAGCAGGCAGAAGGGATTTTCAGAATAAATGCTGAAAACAGCGAGGAGGAGCTGGTTAGGGAGCAATTAAACCGTGGAATAATTCCTGATGGCATTGATGTACATTGTCTGGCAGGTCTCATTAAGGTATGTCTCTTCAACAACACTCTTTGTATTAATCTTCTCCAATATATTTCATCCTTTGTATGCACATTGAATAATGTTGATATAGGCATTCATCTCACTTTATAAGATCTCATTCATGCTTTTGTAAATCTGCTATGTGCTACAAATTACAAACCCATGATTAAAAGAAATGCTTCGATTTGAGAGCATATAATATGGGACCTTGCTCAAATTACGCTGTGGATCATGGTTGAGACTAGTATAAATGTATACTACTTGTTGCATATAATGCACATCCGCTCCTGGCAAAGTAGTGATGATCCTGATGTGGCTTTTATTTGTTAAATATGCACCCACTCCAAAACAGCATGAAGACAATTTATAGACATGTAATTCTGTGGAGAGTAGGAAAGAACTGGGGGGCAGGGGGTGTCTCACATCAGTGCATAAAAGCATGACACTTCCAATCCTCTTAGGTATGAGCGGTTATTAACCCACTTATTATTAGCTCAGCTCATCACATAGTCCTGCGGGCGGACTTTAATAGTGAGCCTTTGTGGTGTACCCCATAGTAGACTACGAGATCGGTTTATTAAAGTTCTCAAGGCTGGGAACTCATGCTTCTCATTGTTTTAGATTTTGTAATAGAATGGTGGTGAGCTATTTGTACCGAGATATAGTCAATGTGAAGTTGGTTATAAATACTATCCTGATCTTTTCCAGACCATTTGTCAATACACAGGTAAGTCAAGGCATGCGACTTTTGATCATATCCTAGAATTGATGAATATATAGAGATTTAGATTTCTGTTCTGAAACCTTGTGTTGATTATGATTGACACAACTTTGCTTTTCCACAAAATTGCCTACGCTCGCCAGAGGTTCACCGAGAAAATGATAAACCTTCAACCTCTGGGAAGCTGGTGGAAGACAACAAATAATCAGGGATCATAAATGTCATTACTTTTCTCCTCTTATAAAAAAAAATCTTAGATTTTTATTTGCTTTTCATATTTTACTAATTGTCTGCTTGATCATGTGATGGATTAGTGAAGGCAAACATTTAGACACTTGTAATTCTTAATATGCACCTAATTAGTAAAAGGTGGACATGATTTCACCTTATGATTGTGTTGCAAGTTTTTCTCACTAAAGTGACTGTGGCATCACAGGCTTGCCATTAGAACTTCCTTTTACCTCCTTGACATTTATGGTTATTTTGTGAAGAAATGTCCTGTTGTAAATGCAGCAGTTACATTTCATGGTTTCTATGGTGTTAGAGTGCTGCTTCATCATTGCCACAATTCGGATGTTTATTCTGTTAGATCTTTTTCTTTTCTTATTTGTTTGTCCTTCATCTGACATCATGTAACTTAACAGGCTTGGTTCAGGGAACTCCCAAGTGGGGTGTTGGATACCCTTTCTCCTGAGCAGGTCATGCAATGCCAGTCAGAAGAGGACTGTACTGCACTCGTGAGACTTCTGCCACAGACAGAAGCTGCTCTGCTGGATTGGGCTATCAATCTCATGGCTGATGTTGTCCTGGAGGAACACCGAAACAAGATGAATTCGCGCAATGTCGCAATGGTGTTTGCTCCTAATATGACACAGGTGGGGTACTGGTCTCTCAGATACATCGTTCGCATTTTCTCTTGGTAGTCGACATAAATTTCTTTATTAAACCATCAACTCCCCATCCCAAAAAGAGAAAAATAAAGGAAGGAACAAAATAGCAAAATTATAACTAACAAAGGGAGGAGGGGGTTCTCTCCTCAAAACTCACGTAAAACATCCATGGGGCAATTTGCTTTCCATAAGCTGAGACTTTATTGCAAAAGAACAAATAGAGAATGAGTTGAAATTTGCCTTCTATAAACTGTTTTATTCGTGTTTATCTGCCAACCTATTCCCTGCTTAATGGCTGGATCAGTATAATGGAGTAACTTTTAGCTTCTTCCTTGCAGATGGCAGATCCATTGACTGCACTGATGTATGCTGTTCAAGTAATGAATTTCTTGAGGACACTCATCGAAAAGACTTTAAAAGATAGAGAAGATTCCCTTGTTGAACCAGATTCTGCCTCTAACCTAGACCGGCCTGATGAGTATGGTCATCAA</genome_strand>
        <mrna_strand>GAGATTGGATGGCCTACTAATGTGCGTCATGTTGCACATGTTACCTTTGATAGGTTCAATGGATTTTTGGGTCTCCCTGTTGAATTTGAGCCAGAAGTTTCCAGAAGGGCCCCCAGTGCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACTGTATTTGGAGTGTCAACGGAGTCCATGCAATTGTCTTTTGACTCCCGTGGTAATAGTGTTCCAACTATTCTACTTCTAATGCAAAGGCGTTTGTATGCTCAAGGAGGTCTACAG......................................................................................................................GCAGAAGGGATTTTCAGAATAAATGCTGAAAACAGCGAGGAGGAGCTGGTTAGGGAGCAATTAAACCGTGGAATAATTCCTGATGGCATTGATGTACATTGTCTGGCAGGTCTCATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTTCAGGGAACTCCCAAGTGGGGTGTTGGATACCCTTTCTCCTGAGCAGGTCATGCAATGCCAGTCAGAAGAGGACTGTACTGCACTCGTGAGACTTCTGCCACAGACAGAAGCTGCTCTGCTGGATTGGGCTATCAATCTCATGGCTGATGTTGTCCTGGAGGAACACCGAAACAAGATGAATTCGCGCAATGTCGCAATGGTGTTTGCTCCTAATATGACACAG.................................................................................................................................................................................................................................................................................................................................................................ATGGCAGATCCATTGACTGCACTGATGTATGCTGTTCAAGTAATGAATTTCTTGAGGACACTCATCGAAAAGACTTTAAAAGATAGAGAAGATTCCCTTGTTGAACCAGATTCTGCCTCTAACCTAGACCGGCCTGATGAGTATGGTCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544568" ref_strand="+" ref_description="SGN-E544568 [TUS-66-P12]">
      <seq>cccaaatcaagaatctatatatatatatatataagaaatttgaagaaaatataaacaaatataatcttgaaatccaacttcacagcaaagcatttttcctttttttatctctatatgtagtgttaaaaagactgtgtctttgttgctttttcaacgcgccattaaaagggcttgttcagaaaacaataaacaatatgctagagttcatgattctcacgtcccacatctcttaacttgagaaaaattcaatctttaaccccatttttccatttttcttgaattagtctttactggggtttgttgattcttgagatatcaatccaagaatctggaaaaaaatcatttttttattggattcttggtacatttttatagtctggtgtaaagggtaaccatgacagaagtcctccactcttcttctccttccccttcctctccttcaatatctacacctacccacaatgggacattgtttgtagaagaaattgggggttctgagattgctgtttgtgattctgaggaagaaataggtgaaggggaagaagaagaaggagaagaaggggaaaaaagggagaaatcaagaaagggatcacttgtctttattggctcttttggtgacattgtttagaaagagtttttggttagcttgcaaaaacggatagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="107894" stop="106631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107594" g_stop="106931" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E544568" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107594" e_stop="106931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATCAAGAATCTATATATATATATATATAAGAAATTTGAAGAAAATATAAACAAATATAATCTTGAAATCCAACTTCACAGCAAAGCATTTTTCCTTTTTTTATCTCTATATGTAGTGTTAAAAAGACTGTGTCTTTGTTGCTTTTTCAACGCGCCATTAAAAGGGCTTGTTCAGAAAACAATAAACAATATGCTAGAGTTCATGATTCTCACGTCCCACATCTCTTAACTTGAGAAAAATTCAATCTTTAACCCCATTTTTCCATTTTTCTTGAATTAGTCTTTACTGGGGTTTGTTGATTCTTGAGATATCAATCCAAGAATCTGGAAAAAAATCATTTTTTTATTGGATTCTTGGTACATTTTTATAGTCTGGTGTAAAGGGTAACCATGACAGAAGTCCTCCACTCTTCTTCTCCTTCCCCTTCCTCTCCTTCAATATCTACACCTACCCACAATGGGACATTGTTTGTAGAAGAAATTGGGGGTTCTGAGATTGCTGTTTGTGATTCTGAGGAAGAAATAGGTGAAGGGGAAGAAGAAGAAGGAGAAGAAGGGG-AAAAAGGGAGAAATCAAGAAAGGGATCACTTGTCTTTATTGGCTCTTTTGGTGACATTGTTTAGAAAGAGTTTTTGGTTAGCTTGC-AAAACGGATAGGGGA</genome_strand>
        <mrna_strand>CCCAAATCAAGAATCTATATATATATATATATAAGAAATTTGAAGAAAATATAAACAAATATAATCTTGAAATCCAACTTCACAGCAAAGCATTTTTCCTTTTTTTATCTCTATATGTAGTGTTAAAAAGACTGTGTCTTTGTTGCTTTTTCAACGCGCCATTAAAAGGGCTTGTTCAGAAAACAATAAACAATATGCTAGAGTTCATGATTCTCACGTCCCACATCTCTTAACTTGAGAAAAATTCAATCTTTAACCCCATTTTTCCATTTTTCTTGAATTAGTCTTTACTGGGGTTTGTTGATTCTTGAGATATCAATCCAAGAATCTGGAAAAAAATCATTTTTTTATTGGATTCTTGGTACATTTTTATAGTCTGGTGTAAAGGGTAACCATGACAGAAGTCCTCCACTCTTCTTCTCCTTCCCCTTCCTCTCCTTCAATATCTACACCTACCCACAATGGGACATTGTTTGTAGAAGAAATTGGGGGTTCTGAGATTGCTGTTTGTGATTCTGAGGAAGAAATAGGTGAAGGGGAAGAAGAAGAAGGAGAAGAAGGGGAAAAAAGGGAGAAATCAAGAAAGGGATCACTTGTCTTTATTGGCTCTTTTGGTGACATTGTTTAGAAAGAGTTTTTGGTTAGCTTGCAAAAACGGATAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307705" ref_strand="+" ref_description="SGN-E307705 [cLEY-16-K5]">
      <seq>ccaaatcaagaatctatatatatatatatataagaaatttgaagaaaatataaacaaatataatcttgaaatccaacttcacagcaaagcatttttcctttttttatctctatatgtagtgttaaaaagactgtgtctttgttgctttttcaacgcgccattaaaagggcttgttcagaaaacaataaacaatatgctagagttcatgattctcacgtcccacatctcttaacttgagaaaaattcaatctttaaccccatttttccatttttcttgaattagtctttactggggtttgttgattcttgagatatcaatccaagaatctggaaaaaaatcatttttttattggattcttggtacatttttatagtctggtgtaaagggtaaccatgacagaagtcctccactcttcttctccttccccttcctctccttcaatatctacacctacccacaatgggacattgtttgtagaagaaattgggggttctgagattgctgtttgtgattctgaggaagaaataggtgaaggggaagaagaagaaggagaagaaggggaaaaagggagaaatcaagaaagggatcacttgtctttattggctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="107893" stop="106682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107593" g_stop="106982" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E307705" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107593" e_stop="106982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCAAGAATCTATATATATATATATATAAGAAATTTGAAGAAAATATAAACAAATATAATCTTGAAATCCAACTTCACAGCAAAGCATTTTTCCTTTTTTTATCTCTATATGTAGTGTTAAAAAGACTGTGTCTTTGTTGCTTTTTCAACGCGCCATTAAAAGGGCTTGTTCAGAAAACAATAAACAATATGCTAGAGTTCATGATTCTCACGTCCCACATCTCTTAACTTGAGAAAAATTCAATCTTTAACCCCATTTTTCCATTTTTCTTGAATTAGTCTTTACTGGGGTTTGTTGATTCTTGAGATATCAATCCAAGAATCTGGAAAAAAATCATTTTTTTATTGGATTCTTGGTACATTTTTATAGTCTGGTGTAAAGGGTAACCATGACAGAAGTCCTCCACTCTTCTTCTCCTTCCCCTTCCTCTCCTTCAATATCTACACCTACCCACAATGGGACATTGTTTGTAGAAGAAATTGGGGGTTCTGAGATTGCTGTTTGTGATTCTGAGGAAGAAATAGGTGAAGGGGAAGAAGAAGAAGGAGAAGAAGGGGAAAAAGGGAGAAATCAAGAAAGGGATCACTTGTCTTTATTGGCTCTTTTG</genome_strand>
        <mrna_strand>CCAAATCAAGAATCTATATATATATATATATAAGAAATTTGAAGAAAATATAAACAAATATAATCTTGAAATCCAACTTCACAGCAAAGCATTTTTCCTTTTTTTATCTCTATATGTAGTGTTAAAAAGACTGTGTCTTTGTTGCTTTTTCAACGCGCCATTAAAAGGGCTTGTTCAGAAAACAATAAACAATATGCTAGAGTTCATGATTCTCACGTCCCACATCTCTTAACTTGAGAAAAATTCAATCTTTAACCCCATTTTTCCATTTTTCTTGAATTAGTCTTTACTGGGGTTTGTTGATTCTTGAGATATCAATCCAAGAATCTGGAAAAAAATCATTTTTTTATTGGATTCTTGGTACATTTTTATAGTCTGGTGTAAAGGGTAACCATGACAGAAGTCCTCCACTCTTCTTCTCCTTCCCCTTCCTCTCCTTCAATATCTACACCTACCCACAATGGGACATTGTTTGTAGAAGAAATTGGGGGTTCTGAGATTGCTGTTTGTGATTCTGAGGAAGAAATAGGTGAAGGGGAAGAAGAAGAAGGAGAAGAAGGGGAAAAAGGGAGAAATCAAGAAAGGGATCACTTGTCTTTATTGGCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732808" ref_strand="+" ref_description="SGN-E732808 [LB03AG12]">
      <seq>ccgatgaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113766" stop="13847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113542" g_stop="113538" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113537" i_stop="113465" i_length="73">
            <donor d_prob="0.386" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="130" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="169" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111696" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="568" r_length="399" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111695" i_stop="110285" i_length="1411">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110284" g_stop="110267" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="586" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E732808" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113542" e_stop="113538"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111696"/>
          <exon e_start="110284" e_stop="110267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGTTTGTTACCTCTATCATATATTCCCCCCTTTACCTGTTTATACCATGGAAATAATGCAGTACATCTCGACCTATCGCGATAGTAGTAGTTTCTTTTTACTGTCATCTGCTTCCATCCATGGTCAGTGTGATCTGATCTAGTACTAGACTTCCGTTGTATCTGTTCTTGTTTTCACCTCTTTTTTGAGTTGACACCATTATTATGAGAGCTTACGCTACACCTTAAGACTATTCGGAGTGAATCGGTCTCTAAGGTACACGAAGTTGAATCAGTCGTTAAACAGAGATCTATCTACCTTATCTTTGTGCAGATCTTTGTTTTTATTTAATATGTTTTTTGATTGTTGTCATATTCCTATAGATTTTGATTAGTCTGATATCTTTTTGAGCATTAGTGCATAATATAATCCCTTTTTGCAACTTACATGGACATAATATAAAGCATAGTGTTAGACTTTGTCAGACAACTCAACTTCTCTAAACACATATTTTACAAGGGCATCGTCTGCACGTCTGCAATTTTGCATTACTTATTTGTTGGTCTGATTTTATGATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAATTTATTTATTTCCCTTCAAAGTAATAGGGGTCTTTACAGAAAAGAAATTACAAAATGCAGTTGCAAGTTGGGAAATTAAAAATAATTTAGTAGCATTAATTTAAGCAGACCCTTTAACCTTCTTAAAAATAGCAAAAATTGCACCAAGCACAGCTACTACAGCACCTGATATCAAAAGGGTTGCCTTCAAATCTCCTTCTCCTTTCTTTTCCTCCTACAAAGTTAACAGATGACAGAAACCAAATAAATTTAAAATTATTTTTGATATGCACGTCTCGATTTCAACTGACAATTAAACACTAACATCAACGTAACATACGAGTTGAGATGTCTAGATATACATACTCAAAAAGTTAAAAAGTGATTATTTGCCTACTAAGGTCAAATTTGAGTGAGTTTAATTGAATTTAGCAACTATTTAGTTACAATTTTTCAGTTTACGAAGTACGATAAATACTTTAATTTCTTAAATTTCATGTCAAGTCTAAACAACAAAGAAATCGAAATAGAATGAGATATTTAGTTGAAAAAAAAAGGTTATTACCTTGATTTCCTTAGATATTTCATCAACGACGGCAGCTACCGCCTCCTCCGATGGTGGTTCCGGCGCCGGCGCCGGTTGAGCTGAAGGTTCGATTGTTCCCTCTTCAGTTGCCATTTTTTTAAAAAAAACTTTGGTTACTATTGATGAATTTTAATTTTTTTGGGTTCTTAAATTATTACATTTATAAAATTTTTATAATATTTTTTGTCATTATTTATCGTGTGGTGTAGATAATAAAAGGATAAAAA</genome_strand>
        <mrna_strand>CCGAT.........................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745164" ref_strand="+" ref_description="SGN-E745164 [GI|47105964]">
      <seq>ggtgattcacacaccgaaacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117366" stop="13851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117067" g_stop="117041" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="152" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="191" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111825" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="461" r_length="270" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111824" i_stop="110285" i_length="1540">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110284" g_stop="110273" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="473" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E745164" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117067" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111825"/>
          <exon e_start="110284" e_stop="110273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGATTCACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGTTTGTTACCTCTATCATATATTCCCCCCTTTACCTGTTTATACCATGGAAATAATGCAGTACATCTCGACCTATCGCGATAGTAGTAGTTTCTTTTTACTGTCATCTGCTTCCATCCATGGTCAGTGTGATCTGATCTAGTACTAGACTTCCGTTGTATCTGTTCTTGTTTTCACCTCTTTTTTGAGTTGACACCATTATTATGAGAGCTTACGCTACACCTTAAGACTATTCGGAGTGAATCGGTCTCTAAGGTACACGAAGTTGAATCAGTCGTTAAACAGAGATCTATCTACCTTATCTTTGTGCAGATCTTTGTTTTTATTTAATATGTTTTTTGATTGTTGTCATATTCCTATAGATTTTGATTAGTCTGATATCTTTTTGAGCATTAGTGCATAATATAATCCCTTTTTGCAACTTACATGGACATAATATAAAGCATAGTGTTAGACTTTGTCAGACAACTCAACTTCTCTAAACACATATTTTACAAGGGCATCGTCTGCACGTCTGCAATTTTGCATTACTTATTTGTTGGTCTGATTTTATGATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAATTTATTTATTTCCCTTCAAAGTAATAGGGGTCTTTACAGAAAAGAAATTACAAAATGCAGTTGCAAGTTGGGAAATTAAAAATAATTTAGTAGCATTAATTTAAGCAGACCCTTTAACCTTCTTAAAAATAGCAAAAATTGCACCAAGCACAGCTACTACAGCACCTGATATCAAAAGGGTTGCCTTCAAATCTCCTTCTCCTTTCTTTTCCTCCTACAAAGTTAACAGATGACAGAAACCAAATAAATTTAAAATTATTTTTGATATGCACGTCTCGATTTCAACTGACAATTAAACACTAACATCAACGTAACATACGAGTTGAGATGTCTAGATATACATACTCAAAAAGTTAAAAAGTGATTATTTGCCTACTAAGGTCAAATTTGAGTGAGTTTAATTGAATTTAGCAACTATTTAGTTACAATTTTTCAGTTTACGAAGTACGATAAATACTTTAATTTCTTAAATTTCATGTCAAGTCTAAACAACAAAGAAATCGAAATAGAATGAGATATTTAGTTGAAAAAAAAAGGTTATTACCTTGATTTCCTTAGATATTTCATCAACGACGGCAGCTACCGCCTCCTCCGATGGTGGTTCCGGCGCCGGCGCCGGTTGAGCTGAAGGTTCGATTGTTCCCTCTTCAGTTGCCATTTTTTTAAAAAAAACTTTGGTTACTATTGATGAATTTTAATTTTTTTGGGTTCTTAAATTATTACATTTATAAAATTTTTATAATATTTTTTGTCATTATTTATCGTGTGGTGTAGATAATAAAAGGA</genome_strand>
        <mrna_strand>GGTGATTCACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721237" ref_strand="+" ref_description="SGN-E721237 [FC13AG03]">
      <seq>cggccaaatcggccgaattgattattataaaagattccataaatgtaataatttaagaacccaaaaaaattaaaattcgtcaatagtaaccaaagttttttttaaaaaaatggcaactgaagagggaacaatctaaccttcaactcaaccggcgccggcgccggaaccaccatcgaaggaggcggtagctgccgtcgttgatgaaatatctgaggaaatcgaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcgggtgctgtaatagctgtgcttggagcaatttttgatatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgaatttggtaatttcttttctgtaaagacccctattactttgaaggaaaataaataaattccatttgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110013" stop="111373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110315" g_stop="110514" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="223" r_length="201" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111073" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="452" r_length="229" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E721237" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110315" e_stop="110514"/>
          <exon e_start="110845" e_stop="111073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATAAAA-ATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTA</genome_strand>
        <mrna_strand>TATTATAAAAGATTCCATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCGTCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCTAACCTTCAACTCAACCGGCGCCGGCGCCGGAACCACCATCGAAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTGAGGAAATCGAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCGGGTGCTGTAATAGCTGTGCTTGGAGCAATTTTTGATATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGAATTTGGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGAAAATAAATAAATTCCATTTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344372" ref_strand="+" ref_description="SGN-E344372 [cTOF-16-J6]">
      <seq>caaagttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110082" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110382" g_stop="110514" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111075" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="364" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="365" polyA_stop="388"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E344372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110382" e_stop="110514"/>
          <exon e_start="110845" e_stop="111075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATT</genome_strand>
        <mrna_strand>CAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734726" ref_strand="+" ref_description="SGN-E734726 [LB13BG03]">
      <seq>gttttttttaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggataaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactggattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110086" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110386" g_stop="110514" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111075" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="359" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111076" i_stop="111132" i_length="57">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111144" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="371" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E734726" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110386" e_stop="110514"/>
          <exon e_start="110845" e_stop="111075"/>
          <exon e_start="111133" e_stop="111144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATAA</genome_strand>
        <mrna_strand>GTTTTTTTT-AAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGATAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTGGATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAA.........................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728798" ref_strand="+" ref_description="SGN-E728798 [LA18DH11]">
      <seq>gttttttttaaaaaaaggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatgggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110086" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110386" g_stop="110514" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111073" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="357" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111074" i_stop="111132" i_length="59">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111144" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="369" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E728798" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110386" e_stop="110514"/>
          <exon e_start="110845" e_stop="111073"/>
          <exon e_start="111133" e_stop="111144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATAA</genome_strand>
        <mrna_strand>GTTTTTTTTAAAAAAA-GGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATGGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTA...........................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280950" ref_strand="+" ref_description="SGN-E280950 [cLER-7-G9]">
      <seq>ttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110087" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110514" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111072" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="356" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111073" i_stop="111132" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111144" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="368" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E280950" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110514"/>
          <exon e_start="110845" e_stop="111072"/>
          <exon e_start="111133" e_stop="111144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATAA</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTT............................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372227" ref_strand="+" ref_description="SGN-E372227 [TUS-30-F3](-)">
      <seq>ttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110087" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110514" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111084" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="368" r_length="240" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E372227" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110514"/>
          <exon e_start="110845" e_stop="111084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTC</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280302" ref_strand="+" ref_description="SGN-E280302 [cLER-1-I21](-)">
      <seq>ttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110087" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110514" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111082" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="366" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E280302" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110514"/>
          <exon e_start="110845" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGT</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282852" ref_strand="+" ref_description="SGN-E282852 [cLER-15-F7]">
      <seq>ttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110087" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110514" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111082" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="366" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E282852" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110514"/>
          <exon e_start="110845" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGT</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293797" ref_strand="+" ref_description="SGN-E293797 [cLET-37-E20]">
      <seq>ttttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110087" stop="111191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110387" g_stop="110514" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="110891" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="175" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E293797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110387" e_stop="110514"/>
          <exon e_start="110845" e_stop="110891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATC</genome_strand>
        <mrna_strand>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287677" ref_strand="+" ref_description="SGN-E287677 [cLES-9-O14]">
      <seq>tttttttaaaaaaatggcaactgtagagggaacaatggaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgtcgataaaatatctaaggaaaccaaggaggaaacgaaaggagaaggagattagaaggcaacccttttgatatcaggcgctgtagtagctgagctcggtgcaatctttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctggaaagacccctattactttgaagggaaatcaataaattccatttgcttttattataaaataacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111079" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="362" r_length="235" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111080" i_stop="111132" i_length="53">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111143" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="373" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E287677" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111079"/>
          <exon e_start="111133" e_stop="111143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATA</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGTAGAGGGAACAATGGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTCGATAAAATATCTAAGGAAACCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAACGAAAGGAGAAGGAGATTAGAAGGCAACCCTTTTGATATCAGGCGCTGTAGTAGCTGAGCTCGGTGCAATCTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGGAAAGACCCCTATTACTTTGAAGGGAAATCAATAAATTCCATTTGCTTTTATTATAA.....................................................AATAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295051" ref_strand="+" ref_description="SGN-E295051 [cLET-40-O17]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatgtaaggaaatcaaggaggaaaagaaaggataaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaacagcattttgtaatttgttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111085" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="368" r_length="241" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E295051" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATGTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGATAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACAGCATTTTGTAATTTGTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283070" ref_strand="+" ref_description="SGN-E283070 [cLER-17-H18]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111085" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="368" r_length="241" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E283070" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372228" ref_strand="+" ref_description="SGN-E372228 [TUS-30-F3]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111085" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="368" r_length="241" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E372228" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280301" ref_strand="+" ref_description="SGN-E280301 [cLER-1-I21]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111083" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="366" r_length="239" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E280301" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370501" ref_strand="+" ref_description="SGN-E370501 [TUS-29-I3]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111083" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="366" r_length="239" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E370501" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTT</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297159" ref_strand="+" ref_description="SGN-E297159 [cLET-29-A12]">
      <seq>tttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtgaagacccctattactttgaagggaaataaataaattccatttgcttttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110088" stop="111375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110388" g_stop="110514" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111076" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="359" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E297159" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110388" e_stop="110514"/>
          <exon e_start="110845" e_stop="111076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTA</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTGAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282211" ref_strand="+" ref_description="SGN-E282211 [cLES-4-E19]">
      <seq>ttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110089" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110389" g_stop="110514" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111080" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="362" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111081" i_stop="111132" i_length="52">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111140" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="370" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E282211" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110389" e_stop="110514"/>
          <exon e_start="110845" e_stop="111080"/>
          <exon e_start="111133" e_stop="111140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAA</genome_strand>
        <mrna_strand>TTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTCAAAA....................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277560" ref_strand="+" ref_description="SGN-E277560 [cLER-6-C6]">
      <seq>ttttttaaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110089" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110389" g_stop="110514" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111082" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="364" r_length="238" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E277560" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110389" e_stop="110514"/>
          <exon e_start="110845" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGT</genome_strand>
        <mrna_strand>TTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285458" ref_strand="+" ref_description="SGN-E285458 [cLES-10-A2]">
      <seq>tttttaaaatttggcaactgaggagggggcaatccaaccttcagctcaaccggcgccggcgcctgaaccaccatcggaggaggcggtagctgccgtccttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcattttctgtagtagctgtgcttggtgcaatctttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattgtgtaatttcttttctgtgaagacccctattactttgaagggaaataaataaattccatttgcttttattaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110091" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110391" g_stop="110514" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111078" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="357" r_length="233" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111079" i_stop="111132" i_length="54">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111141" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="366" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E285458" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110391" e_stop="110514"/>
          <exon e_start="110845" e_stop="111078"/>
          <exon e_start="111133" e_stop="111141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAA</genome_strand>
        <mrna_strand>TTTTTAAAATTTGGCAACTGAGGAGGGGGCAATCCAACCTTCAGCTCAACCGGCGCCGGCGCCTGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCCTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCATTTTCTGTAGTAGCTGTGCTTGGTGCAATCTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTGTGTAATTTCTTTTCTGTGAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTA-A......................................................ACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298307" ref_strand="+" ref_description="SGN-E298307 [cLET-41-K11]">
      <seq>taaaaaaatggcaactgaagagggaacaatcgaaccttcagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggtaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110094" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110394" g_stop="110514" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111080" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="357" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111081" i_stop="111132" i_length="52">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111140" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="365" r_length="8" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E298307" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110394" e_stop="110514"/>
          <exon e_start="110845" e_stop="111080"/>
          <exon e_start="111133" e_stop="111140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAA</genome_strand>
        <mrna_strand>TAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGTAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAAAA....................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284857" ref_strand="+" ref_description="SGN-E284857 [cLER-19-M4]">
      <seq>cctttttctcaaccggcgccggcgcctgaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcatgtgctgtattagctgtgcttggtgcaatttttgctattttgaagaaggttaaagggtttgcttaaattaatgctactaaattatttttaagtttcccaacttgcaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110135" stop="111302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110428" g_stop="110514" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111002" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="246" r_length="159" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E284857" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110428" e_stop="110514"/>
          <exon e_start="110845" e_stop="111002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAA-TTTCCCAACTTGCAACTGC</genome_strand>
        <mrna_strand>CCTTTTTCTCAACCGGCGCCGGCGCCTGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCATGTGCTGTATTAGCTGTGCTTGGTGCAATTTTTGCTATTTTGAAGAAGGTTAAAGGGTTTGCTTAAATTAATGCTACTAAATTATTTTTAAGTTTCCCAACTTGCAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281693" ref_strand="+" ref_description="SGN-E281693 [cLER-14-D12]">
      <seq>cagctcaaccggcgccggcgccggaaccaccatcggaggaggcggtagctgccgtcgttgatgaaatatctaaggaaatcaaggaggaaaagaaaggagaaggagatttgaaggcaacccttttgatatcaagtgctgtagtagctgtgcttggtgcaatttttgctatttttaaaaaaggtaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttggaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110132" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110432" g_stop="110514" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110845" g_stop="111072" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="311" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111073" i_stop="111132" i_length="60">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111133" g_stop="111144" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="323" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E281693" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110432" e_stop="110514"/>
          <exon e_start="110845" e_stop="111072"/>
          <exon e_start="111133" e_stop="111144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAGGTAATAACCTTTTTTTTTCAACTAAATATCTCATTCTATTTCGATTTCTTTGTTGTTTAGACTTGACATGAAATTTAAGAAATTAAAGTATTTATCGTACTTCGTAAACTGAAAAATTGTAACTAAATAGTTGCTAAATTCAATTAAACTCACTCAAATTTGACCTTAGTAGGCAAATAATCACTTTTTAACTTTTTGAGTATGTATATCTAGACATCTCAACTCGTATGTTACGTTGATGTTAGTGTTTAATTGTCAGTTGAAATCGAGACGTGCATATCAAAAATAATTTTAAATTTATTTGGTTTCTGTCATCTGTTAACTTTGTAGGAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATAA</genome_strand>
        <mrna_strand>CAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG..........................................................................................................................................................................................................................................................................................................................................GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAAGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAAAAAGGTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGGAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTT............................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216295" ref_strand="+" ref_description="SGN-E216295 [cLEL-13-N24](-)">
      <seq>ggcaccagggagatttgaaggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattataatgttctgcttgtagcatatgcctaattattattattttttatcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110561" stop="111441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110853" g_stop="111141" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E216295" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110853" e_stop="111141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAA</genome_strand>
        <mrna_strand>GGCACCAG--GGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286186" ref_strand="+" ref_description="SGN-E286186 [cLES-11-E21]">
      <seq>gatttgaagggcaacccttttgatatcaggtgctgtagtagctgtgcttggtgcaatttttgctatttttaagaaggttaaagggtctgcttaaattaatgctactaaattatttttaatttcccaacttgcaactgcattttgtaatttcttttctgtaaagacccctattactttgaagggaaataaataaattccatttgcttttattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="110566" stop="111379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110866" g_stop="111078" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111079" i_stop="111132" i_length="54">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111133" g_stop="111148" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="230" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E286186" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110866" e_stop="111078"/>
          <exon e_start="111133" e_stop="111148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAA-GGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAATAAGTAA</genome_strand>
        <mrna_strand>GATTTGAAGGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTAAA......................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267693" ref_strand="-" ref_description="SGN-E267693 [cLEI-12-E8]">
      <seq>agggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacttgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttcaagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggccaagaagacggaacaagtacaggattgaagtatctccttattagcgaactccttaaaagaccccaaaattcagcaaactcgtgtttcgtagacagcatccaaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactggtgaactggatgacgttctatatgtgttgcttctttgacatgatcccaaaaaaaaaaaaaaaaaaaaacgcgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="112396" stop="13841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112096" g_stop="111689" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111688" i_stop="111022" i_length="667">
            <donor d_prob="0.456" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111021" g_stop="110990" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="439" r_length="31" r_score="0.656"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E267693" ref_strand="-">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267693" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112096" e_stop="111689"/>
          <exon e_start="111021" e_stop="110990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGTTTGTTACCTCTATCATATATTCCCCCCTTTACCTGTTTATACCATGGAAATAATGCAGTACATCTCGACCTATCGCGATAGTAGTAGTTTCTTTTTACTGTCATCTGCTTCCATCCATGGTCAGTGTGATCTGATCTAGTACTAGACTTCCGTTGTATCTGTTCTTGTTTTCACCTCTTTTTTGAGTTGACACCATTATTATGAGAGCTTACGCTACACCTTAAGACTATTCGGAGTGAATCGGTCTCTAAGGTACACGAAGTTGAATCAGTCGTTAAACAGAGATCTATCTACCTTATCTTTGTGCAGATCTTTGTTTTTATTTAATATGTTTTTTGATTGTTGTCATATTCCTATAGATTTTGATTAGTCTGATATCTTTTTGAGCATTAGTGCATAATATAATCCCTTTTTGCAACTTACATGGACATAATATAAAGCATAGTGTTAGACTTTGTCAGACAACTCAACTTCTCTAAACACATATTTTACAAGGGCATCGTCTGCACGTCTGCAATTTTGCATTACTTATTTGTTGGTCTGATTTTATGATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAATTTATTTATTTCCCTTCAAAGTAATAGGGGTCTTTACAGAAAAGAAATTACAAAATGCAGTTGCAAGTT</genome_strand>
        <mrna_strand>AGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACTTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCAAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGCCAAGAAGACGGAACAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCCCAAAATTCAGCAAACTCGTGTTTCGTAGACAGCATCCAAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGGTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCCCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAACGC-GAGACTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285189" ref_strand="+" ref_description="SGN-E285189 [cLER-20-F9]">
      <seq>gaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctataaaaaaaaaaaaaaaaaactcagactaggttcgatgatgataataataataataataataataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113764" stop="13851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="164" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111716" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="543" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111715" i_stop="111122" i_length="594">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111121" g_stop="111058" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="606" r_length="63" r_score="0.609"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E285189" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111716"/>
          <exon e_start="111121" e_stop="111058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGTTTGTTACCTCTATCATATATTCCCCCCTTTACCTGTTTATACCATGGAAATAATGCAGTACATCTCGACCTATCGCGATAGTAGTAGTTTCTTTTTACTGTCATCTGCTTCCATCCATGGTCAGTGTGATCTGATCTAGTACTAGACTTCCGTTGTATCTGTTCTTGTTTTCACCTCTTTTTTGAGTTGACACCATTATTATGAGAGCTTACGCTACACCTTAAGACTATTCGGAGTGAATCGGTCTCTAAGGTACACGAAGTTGAATCAGTCGTTAAACAGAGATCTATCTACCTTATCTTTGTGCAGATCTTTGTTTTTATTTAATATGTTTTTTGATTGTTGTCATATTCCTATAGATTTTGATTAGTCTGATATCTTTTTGAGCATTAGTGCATAATATAATCCCTTTTTGCAACTTACATGGACATAATATAAAGCATAGTGTTAGACTTTGTCAGACAACTCAACTTCTCTAAACACATATTTTACAAGGGCATCGTCTGCACGTCTGCAATTTTGCATTACTTATTTGTTGGTCTGATTTTATGATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAAT</genome_strand>
        <mrna_strand>GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCAGAC-TAGGTTCGATGATGATAATAATAATAATAATAATAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324491" ref_strand="+" ref_description="SGN-E324491 [cTOC-9-C11]">
      <seq>aaatttgagatggcagccagaaatgctttcagatatgtttctcgtaagctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaagtggctcaaggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcacctcgtattactcggttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113750" stop="111373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113450" g_stop="113340" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="150" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111673" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="572" r_length="422" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E324491" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113450" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGT</genome_strand>
        <mrna_strand>AAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAAGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAAGTGGCTCAAGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552834" ref_strand="+" ref_description="SGN-E552834 [cTSB-5-D10]">
      <seq>agccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcacctcgtattactcggttcgtttgttacctcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="112387" stop="111354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112087" g_stop="111679" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="438"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E552834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112087" e_stop="111679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCG</genome_strand>
        <mrna_strand>AGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E713662" ref_strand="+" ref_description="SGN-E713662 [FB09BA12]">
      <seq>cggttattcacacaccgaaacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117366" stop="111393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117068" g_stop="117041" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="153" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="192" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111689" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="598" r_length="406" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E713662" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117068" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATTCACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC</genome_strand>
        <mrna_strand>CGGTTATTCACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717279" ref_strand="+" ref_description="SGN-E717279 [FB19DA01]">
      <seq>gatacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113775" stop="13853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113475" g_stop="113340" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="176" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111689" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="582" r_length="406" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E717279" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113475" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTA-ATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC</genome_strand>
        <mrna_strand>GATACAACAGAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716816" ref_strand="+" ref_description="SGN-E716816 [FB18AD12]">
      <seq>atttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtacgctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctatctggactgatcactggtgttggtgctttgagttggtacctaatgtcataggacgataagacggaagaagtactggattgaagtatctccttattatcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcaccaaataaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113760" stop="111391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113460" g_stop="113340" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="160" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111689" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="566" r_length="406" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E716816" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113460" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC</genome_strand>
        <mrna_strand>ATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTACGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTATCTGGACTGATCACTGGTGTTGGTGCTTTGAGTTGGTACCTAATGTCATAGGACGATAAGACGGAAGAAGTACTGGATTGAAGTATCTCCTTATTATCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279379" ref_strand="+" ref_description="SGN-E279379 [cLER-11-B3]">
      <seq>gaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgttttgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgaaaaaaacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113669" stop="111393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113369" g_stop="113340" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="69" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111689" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="475" r_length="406" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E279379" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113369" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC</genome_strand>
        <mrna_strand>GAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTTGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGAAAAAAACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331908" ref_strand="+" ref_description="SGN-E331908 [cTOD-16-E5]">
      <seq>acacaccgaaacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgacatgatcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117359" stop="111390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117059" g_stop="117041" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="144" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="183" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111690" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="588" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E331908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117059" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCT</genome_strand>
        <mrna_strand>ACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716458" ref_strand="+" ref_description="SGN-E716458 [FB17AD11]">
      <seq>ggaatatttgagaagatatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113765" stop="111399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113465" g_stop="113340" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="165" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111691" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="569" r_length="404" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E716458" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113465" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACC</genome_strand>
        <mrna_strand>GGAATATTTGAGAAGATATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712493" ref_strand="+" ref_description="SGN-E712493 [FB05AA10]">
      <seq>ccataaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttccttctgtatggttttccaccagctggatgtacaaaaatctccagaactgggcgtacattttacaactgctgaactggatgacgttctatatgtgttgcttctttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113734" stop="111399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113434" g_stop="113340" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="134" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111700" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="529" r_length="395" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="539"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E712493" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113434" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGAC</genome_strand>
        <mrna_strand>CCATAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298839" ref_strand="+" ref_description="SGN-E298839 [cLET-44-L11]">
      <seq>caaagcgtcatttgtgattcacacaccgaaacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaggctctctagcagtggcaaggtattaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcagggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggtgctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtacaggattgaagtatctccttattagcgaactccttaaaagaccaaaaaataaagcaaactcgtgtttcgtaaacagtatcctaatctcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="117379" stop="111507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117079" g_stop="117041" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113464" g_stop="113340" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="203" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112094" g_stop="111807" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="491" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E298839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117079" e_stop="117041"/>
          <exon e_start="113464" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAGGTGAGAAAACTTCTCCTCTCTCTCTCTCTATTACTGTGCTTCTAATGCAATGTAAAATGGCTGTATGTTGGCGTATTGTTAGGGTTTCATTTTGATTGAGTTTCATCACGGTAGTTCGATTACTTGATGCGGTTGGCCGGTAGAGTTTTGACAGTTTTTCAGCTGTTTTTATGCCGTTTGAGGATTTGAATTTCTGTATATCATTATATGCTGATTTGTTCATCCAGATGAGCATAAACAGTGTTAATTTTTGAATATTGAAGTGTAAGGATAATGGAATGCTAGGTAATTTGTCAGTTTTGACATTCGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAAATCCTTCATATATTATTGATTTTATGCGTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTGTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATTATTGATTTTTTGCTTATTAGTTCCATCCAGATGAACACCAAACAGTGTTCTAGGATTTTTGCGGTTTGACTATTCGTGAGCTGATAGTATGCTCTTATTTGTTCGTCCAGATTAGCATTAAACATTGTGAATATTTTGGTTTTTTAAGTCCAAGGATAATAGAATGCTAGGTAATTTGTCAGTTTGACATTCGTGAGCTACTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCGTATATTATTGATTTTATGCTTATTAGTTCGTCCAGATGAGCATTAAACAGTGTGAATTCTTGAATATTGAAGTGTAAGGATAATAGAATGCTAGGTTATTTGTCAGTTTGACATTTTGAGCTGCTTCCATGCCTTTGAAGATTTCATTTATGTAAATCCTTCATATATCATTTATTTTATGCTTATTAGTCTGTCCAGATGAGCATTAAACCGTGCAAAAATGTTGAATGCAAGGATTTGTCAGTTTGACTATTCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCATTAGACAGTGTAAATATTTTGAATTTTTAAGTGCAAGGATAATAGGATGTTAGGTATTTTTTCAGTTTGACATTCGTGAGCTGCTTCAATGCCTTTGAAGATTTCATTTATGTAAATCCCTCATATATCATTGATTATATGCTTATTAGTTCGTCCAAATGAGCTTAAACAGTTTAAATTTTTTTGAATGCAAGGATTTTGTCGTTTTGAATACATGAGCTGATAGTATACTCTTATTTGTTCTTCCAGCTGAGCATTAAACAGAGTGAATATTTTGATTTTTTAAGTGCAAGGATAATAGAATGCTAGGTATTTTGTGAGTTTGTGCCTTTGAAGATTTCATTTATGCAAATCCCTCATATATCGTTGATTATATGCTTATTAGTTCTTCAGGATTAGCATTAAACAGTATAAATTTTGGAAGTTTTGAGTGCAAGGATTTGTTGGTTTGACTATCGTGAGCTGATTAAATGCTTTTATTAGTTCTTCCAGATGAGCACTAAACAGTGTAAATATTTTGAGTTTTTAATTCCAAGGATAATAGAATGCTAGGTAATTTGTGAGCTGCTCCTATGCTGTCTGTACTCTGAAGATTCCATTTCTGTAAATCCTTCAGATATGGTTGATTATATGCTTATTAGTTCTTCTAGATGAGTATTAAACAATGTTAATTTTTTGGAAGTTTTAGAGTGCAAGAATTTTTCGGTTTGACTTTCAGTGAGCTGATTATATGCTTTTTAGTTCTTTTAGATGAGCATTAAACAGTGTAAATATTTTGAGTTTTAACTGCAAGGATAATAGAATGCTAGGTATTTGTCGGTTTGACAATATTCGAGCTGCTTCTATGCCGTTTGAAGATTTCATTTATATAATCCTTTAGATATTATTGACTTTATTTCTTAATGTTTATACACTCATTACTTCTTCCAGATTAGGCATCACAGAGTGTAAATTTTTTGAGTTGTTAAAGTGAAAGGATAATAGAATGCTCGGTATTTGTTGTCTTGAAGATTTCATTTCTGTAAATCCTTCAGATATCATTGAGTTTTTAAGTGCAAGGATAATAGAATACTTATTGGTTATTCCAAAATTGTTAGATACATTCTGTGTTACTATAGCTGCATGAAACAGTTAATATTTGGAACTTTATAAGTGCAAGGGTAATAGGATGTTAGTTATTTGTCAGTGTGACAAATTCTGAGCTGTTTTTATGGCGTATGAAACTATGAATCAGATATTGCGTTTTTTTCTCTGTTTATATGGTTAGATACATACTCTGTTACTATAGGTGCATAATTTTCTGTAAGTTTTATGTGCAAGGGTAATGGAATGATAGTATTCCGATATTTGTCAGTTTTAGATGGTTATTTTGCTGATAACAATAATTATTGTCAGTGTGATACAATTTGGGATCTCCTTTGCACAATTTGAGTAAGTATATGTCAAATACTGATGACTACTATGCTGTGTGAAGATTTTCTTTCTGGAAACCCTTCGATATTGCATTGATTATTTCTGTTTGCATGCTTATTGGTTCTTCCAGATGGTTAGATTCACCCTATCTCATTATAGCTTCATAAAACAGTCTGAAATTTTGAAAGGTTTTTAGTGCAATGAAAGAGAACGCTTGGTGTTTGTTGGTTTGACAATTTCTGAGATATCCCTATGCTGTATAAATCAAATATTGCATTGATATTTTCTAAATTTATGCTCGTTGGTTAGTTCTTCCAGATGGTCAGATTCGTACAATGTTATTATAGCTTCATAAAGCAGTGTAATTTCTTGGAGTTAATAAGTGCAAAGATAATAGTAATGCCAGATATTTGTCAGTTTGACAATTCATGAGCTGTTTCTATGCTGTATGAATCTGCATTGTTTTTTTTTTTCCGTTTATATGCTTATTGTTTCTCCTGCTGGTTAGATACATGCTATGTTATTATAAGTGCACAAAACAATGTAATTCTTTTGGAGGTTTCTATGTGTAAGTATTTGTCAGTTTCAGTCGTTTGTGGTTTTGATGATTACAGTATTATCGTCAGTGTGGTAACAAGTGTGTTCTCCTTTGCACATTTGACCATCTGGAATGGAATTAGTATATGTTAAATATGTGTTGAATACTATGGTCGTTTGTGTTGTTAAAATAGATTTTTGAAACAGGATTTGTACTAGCTGTTGTGTAGGAATGGGTGTCTGACATTCTGTTTTTGTTCTGACAAGGCTATATGAAAGAACATGCAATTTCCCTGTGATAGGGCTACATCCTGTAGGTCCATCTCTCTGTGTGTCATCAATTCTGTATGAATAGATAGGGAATTAGCATTATCTCAGTTATTTGGCTGCGCATTTATTTCTCTGGCTTAGCTGTAATATAAATTTGATTTTCTCAAGTGACTGGTTGATAATTGCAGAAATTTTGACTGGAATTAACCCTAATTGGATGTACACGGTTTCTAGATCTTCAAATGCATTAATATCCATTTGATTTGAATGTAGCTTGATTTGTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTC</genome_strand>
        <mrna_strand>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301927" ref_strand="+" ref_description="SGN-E301927 [cLEX-3-A14]">
      <seq>aacaacagaggaatatttgagaagaaatttgagatggcagccagaaatgctttcagatatgtttctcgtaagctctctagcagcggcaaggtcttaagtgaggaggaaaaagctgctgaaaatgtctacatcaagaaaatggagaaagagaagctggagaagcttgctcgccagggtcccaagccaggagaacaagctgcaggtggctcaaggtcagtacctgatgctgcatcgagtgcccaggcctcttcaacatccagagtatcagatgacaaataccgcaactatggtgttctagctggactgatcactggtgttggagctttgggttggtacctaatgtcaaaggacaagaagacggaagaagtccaggattgaagtatctccttattagcgaactccttaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="113768" stop="111560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113474" g_stop="113340" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112830" g_stop="112792" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="174" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112094" g_stop="111860" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="409" r_length="235" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E301927" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113474" e_stop="113340"/>
          <exon e_start="112830" e_stop="112792"/>
          <exon e_start="112094" e_stop="111860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAGGTAACTCTTTAGTTGTGATCTGCAACTTACCTGTCTTGTGTAGTTACTGCAACAATATTCGTTTCATTTTGGTAGTCCCAGAAAATTATTTTGCATTACGTTAGTGTATTATCTCTTTTTAGCAAAATGGATCCTGGTTTTGCTTCTTTTTTCTTTTTTTATGACAAGGAAACCCACAGCCACTGCTCTTTGGGTGTGCACAGGGTAAAACCACCGGATCCTGGTTTTGCTTTCTTTTTGATGTTCCATTTTTCTCATGATCTCATTTTGCTCACTTGGCATTTGCATGTAGTATGTATACCTTCTTTCTTGAGGGTCCTGGGGCAATTCTATTATAGTAAAAATTGGGTATTCTTTTATGATTATTTTGCGCTTTTGCTGTTTTTGGGATCATAAGTTGTAAGTTTAAGTGGACACTTAGTTCTGATTTCTGAAGTGTTCAGTCATGAGATATATTGCGTCAAGTCTGCTTTCTAGCTTATCTAAATGTTAAATTTTTCACTTTACAGAAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAGGTATGGGAATTTTCAATATATATATATATATAGCGGGTTAAGACTGGGGCTTACTGAAAATTAATTGGCGTTTTTGCTGCTCCCATTTTGTATATCATAAAGGAAGTCTACTGAGTCAGTAATAAGTTGCCATGTGAGAATAGATTGTTGCTTGTCATACTCTCCTCCCTACCATTTTATGTGTTGATATGAGATACCCTTCAACAGTTATTGCCTCTTTGTCTTTAAGGGTGTCGCCATCTCTTTCAGATAGGTTGGGGATTCTCGTAATAGCTTGGAGAGGTTACTGACTGCTTATGTGCATTGAACCCATCATTACAAGATTCTCTTGAAATTATCCAGTTTGGAACTGGGTCAAAACTCTTGACATGTTCAAAATTCTTATGAGCATTGAACTGACTCTAGTTGAAACAGAAGTGGGCTCATCACCTTCAGAAATTTAACTTAAATGAGGCTGGATAATGAAATAAAACACTCAATTCAGCAACCAAGATATAACTCTAAAGTTGATTTTTCGTTAGTTAAATGGTTTTCGATATTAAACCAGGTCAAGCGTTAAAAAGTTCTTAGCTTAATGCACTTCACAGTTAAAAAAAAAAAAAACTGCCTGGGCTATTTGTTGTGTCTCTTGAATTTTCTCCGCTTGAGTGCCTTTTGACCCCTTGAAATTTCTGCTGTTGTGATTAATATTCCTCAGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAG</genome_strand>
        <mrna_strand>AACAACAGAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAAGCTCTCTAGCAGCGGCAAGGTCTTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAAGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGAGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTCCAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746353" ref_strand="+" ref_description="SGN-E746353 [GI|47104291]">
      <seq>ctctaatctcacgcgctaatggcggtgcgtgcaacggttactcggtttccgattgacgtagagtcactaatggactcagggctaccgtggggtgtaacagtttcaccgtttgctgcaaaggatgagaatgggaatccaccggtttatggatcggaaggtcacttgctaccgcgatgtgagaattgttgggcttactataatacatactgtgagcaagagcaatgggcttggacttgttccctttgtggtacacttaatggactatcttctcagtctgtcagtcgttattctcaacctgaatcttgcccggagaatatgtcttcgtttattgaccttgaattgcccatggaagaatctgaggaaatgcaggcacggcctgtttatgtagcagctgttgatcttgcttcatccgaggagtttttggaacttgttaaaagtgcccttttagctgctttagaagctcttgggcctggatcactatttggcttggccacattcagccataaaataggtttgtatgatgttcaaggccccattccagtggtgaagaatgttttcattcctcatgattctgatggtaccttgtctatggaacttcaggatgtcatgcccctatcttcattcttagctccagtggatacttgtaaggaccgcatagcgtcagcacttgaaacattgaggccaacaacttcatgggaaaggacatcaggtgcaggtcaagggctagatggagctttcctgggtggaaggggttttggatctgcaatggaagcccttttcaattatattggatcagaatatggagatacatttgcattagctagagtttttgcttttctttcgggtgctcctgatattggagctggccaactagatacaagacgatatggagagcagtacgctagtagacgagaggatgcagatcgagctttacttcccgaacaaactccgttctataaagatctggctgccgtggctgtgcaatcaggtgtttgtgtagacatatttgctgtgacaaatgagtatactgacttggcatcattgaagtttctgagtattgagagtggaggctccttatttttgtatacgagtactgatgactccacacttcctcaagacatgtaccgcatgttaagtcgaccatatgcttttaattgtgtcctaaggctgaggacttcgtctgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctataattttgagtttgtgaatgatgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgattgtgttgattctgaagtggtgctttcattacttgtccacaaggttattctagcctcgttggagcaaggcgttcgagagggcagaatgttacttcatgattggcttgttattcttacagctcagtataatgatgcttgtaaacttattcagtctgggcatggaggttcaagtggcgttcacattgatgttgcattttcccaatgtcctcaactgcagcctttaccccgcttggtttttgctctattacgaaatcctcttctccgtttacacgaagaaggcgtgcatcctgactaccgaatatatcttcagtgtctttttagtgcactagaaccttcttctcttagtcgtgcggtatatccattgttaacctcatatgcctcaccggataagcaagcatatcctcgacattccctcagccgagctgcactgattacaagtggcagttcaatatttttccttgatgcattcacaaatctcattgtgttctatgcttcgacagcagaaccttcacttccgtttccgccacctcaggactgtttactgagaacaacaataaacaagcttaagcaagagaggtgtattacaccgagactttcatttatcaagggagggcaggatgatgcaacgacgtttgagaattatctaatagaggaacaagatgttgaaggaagtggctttacaagtgtcatgggtttcgtttcattcctcgatgagattaaccaaagcacattggagtacttgaaataagttgcatccatctttcaacaccacaggttatgacaggaagtagctacctccaaactcactgtacaattcgacaaaaaacagttatatcatcgacaaccaatgaacaagtccaaacttttgcaacgaagggttacatgtagcatcacagtaagtgtttctgacttgctcagagcagttgtaccggtgtcaccacccaagaccgtatcgttatatgtttccctgttcagctttagacagtagatttactcattcaaaatttgtaccagaagctgactcactccggttgataccttaaatatagaataaatagctgtgttttgaaccagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="118181" stop="129120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118481" g_stop="118826" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118827" i_stop="119028" i_length="202">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119029" g_stop="119088" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="406" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119089" i_stop="120645" i_length="1557">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120646" g_stop="120699" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="460" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120700" i_stop="120788" i_length="89">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120789" g_stop="120961" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="633" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120962" i_stop="121083" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121084" g_stop="121270" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="820" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121271" i_stop="121512" i_length="242">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121513" g_stop="121658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="966" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121659" i_stop="121735" i_length="77">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121736" g_stop="121890" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="967" r_stop="1121" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121891" i_stop="123282" i_length="1392">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="123283" g_stop="123364" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1203" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1204" r_stop="1319" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1320" r_stop="1418" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="125708" g_stop="125831" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1419" r_stop="1542" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="126384" g_stop="126661" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1543" r_stop="1820" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="126662" i_stop="127956" i_length="1295">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="127957" g_stop="128171" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1821" r_stop="2035" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="128172" i_stop="128264" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="128265" g_stop="128744" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="2036" r_stop="2515" r_length="480" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2572" polyA_stop="2588"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E746353" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>2515</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118481" e_stop="118826"/>
          <exon e_start="119029" e_stop="119088"/>
          <exon e_start="120646" e_stop="120699"/>
          <exon e_start="120789" e_stop="120961"/>
          <exon e_start="121084" e_stop="121270"/>
          <exon e_start="121513" e_stop="121658"/>
          <exon e_start="121736" e_stop="121890"/>
          <exon e_start="123283" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125831"/>
          <exon e_start="126384" e_stop="126661"/>
          <exon e_start="127957" e_stop="128171"/>
          <exon e_start="128265" e_stop="128744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATCTCACGCGCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACCTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCAGTAAGTGTGTAATTTAGACACCCTTTACTGTAAATCTGGCATTTGGGTATTTTTTGTATTTGAAAACACCCTTTTATGTAATTTTGGAAATTCAAATGTATCCATTTGATGTGAATTTTTGTATTTGAAAACACCTTTTGTCTTATTTTGAGAATTCAGATGCACCCTTTTGAATTTTGTTTGTTTTTTGATGGTGGTGCAGTGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTTGTAAGTTTCTGGCTTATTATTTTTGCTTTGATTTGATGTAGTACTATTACATTGTTTCCTTTCGAGAATCAAAGAAGTCTTTCCGACTTTGAGTTTTGCTGAATTTTTGTTTATCGATTGATAATTTGCTGAAATGTTTTATTTTAAGTTCAAAATATGGTCTGTGGTACTATTCTGTGAAGTTTCCAAGTATAAAACTTTTATTTTGAAAAAGAAGTCAAGGTATTGACTGGTCGAAAACAACCAAAACTCAGTTGGTTTGTTGAGGTTTATGGGAATGGAAGTGCTGTGCCTTGTTGAGTTTTTAAAGAGAATTTTAAGTGCTGTGACTTTTTAGGAGTTCGTAAAGGATGGATGCCATATCTTAACATTGAAGAATCCTAGAGACAAGATACTTGCAAGCATTTCTCCAAAGGTTTTATGCTATATTTTTATTGATGAAAACATAGGTGAAGCTAAAATCTTAACTAAGAATTTATCACTAATTTTTATTTGGCAAACTAGTTTGTTATGATGTGAGTGTCTCTCACACATCTTTATATGTTAGTATTGGTGCTTCTAAGACACAGTAGTTAACATTCATTATAATTGGGTAAGAAACCTGTATTGGCTTGTATACTTTTCATGAATAACCTTTGCTCCTACCAAGGATGTCTCACTTGTCATATTATTACATCTCAAATTGTTGTTCACTTTTATCATGTGGAGAACTTTCCATTGCTATCAGTTTACCTATTAGATGTTATACATCAAAAATTGGCTAGACCTCTTTTTTTTCTCTTTCCTAATTCAAACTTACAAAAATAACTATTTTACTTAGGTTCAGTTAATTTTAGGAATCACCTAGCATAAGAGTATTTATTTCATAGCTTTATCAAGAAAAAGGTATTCATTTGGTATAGCTGTCTGGTTATTAGCTTAGTTATTGAATACCATATCCAAGTCATGTAGAAGAATGTCATATCATTATTATGAATAAAACATGTTCATTTGTCAATATTGTTAAACTCAAAGTCTGGTCCATCAATTTTTGAAACCACACAATATTAAGTGCTCATTAATACCTATTTGTTATTGGCTTATTTGTTGAATATCATATTTCTGTCATGTGGACGAATGTAATATCACTCGATTATCATGCATGGATTAAGTGCTTTATTCTCAAAGTTTTGTTATAAATTATCTCAATACTTGTTGATTTGCCTTTGGTCTTAACGTGCTCAGTTAATTTCCTGAAAGAACTTAAAAGCTCGGTGATTCTTGTTTCAGTGTGTATGTCAAAATAGTTGAAACTCATGTTAAAGAAAAAGGTAAAAATAGCTGAAACTGGATCGTAGTCTCAAAGCACACTCAGGCACATATAATATTAATGCATATTTGTGTATACACCATCATAGTTAAATTTTTTTTGACATCAATCTTCACTTTGCGTACTGTATTTCTGCTGATCATTTAGAGCTATCTTAGGTTTTACAGTAATAACTGATGTATTTTGTGGTAAGAAGATATGTAGAATGTTTGCTATTATGAATTAACTGGTGTGAAGTTCTGACGCAGCATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAGGTTGGTTATTGATGAATCTTTTGAATATAAGTTTATACTCTGTACTGGAGGGAATTTAAAATTTTGTTTTCTTTTGTCTTTTTATCAAGCTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTCAAGGCCCCATTCCAGTGGTGAAGAATGTTTTCATTCCTCATGATTCTGATGGTACCTTGTCTATGGAACTTCAGGATGTCATGCCCCTATCTTCATTCTTAGCTCCAGTACGTTTGTTTAATTTCTTTGCCAATGCTTTTCTTTTTCTAGTTGGAGTGTGAAGGTGTTCCCTTTTTCAATGTCAAAATGGATGAGCATGCACTAGCCCTAAATCAGTGATTTATTGTAGGTGGATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTTTTGGATCTGCAATGGAAGCCCTTTTCAATTATATTGGATCAGAATATGGAAATACATTTGCATTAGGTATGACAATTTCACACTTCTGTCTTTGTGTCAGTTACAATGAATGATTCTTTCTTTGTATCAGTTACAATGAATGATGCACCTCTAGTTAGGTTGGTTTTTGTTACCGTTTGGATCAACCTTTTTCCAATGTGGACAGCTGCAATATGAGAATATTTCCCCTAAATTAGTAGTTCCATAGTATCTTGCCCAAAGATATAATACTCAGTGTCTTTGTTGTTCTTTCCCCAATTGGAATGCAGCTAGAGTTTTTGCTTTTCTTTCGGGTGCTCCCGATATTGGAGCTGGCCAACTAGATACAAGACGATATGGAGAGCAGTACGCTAGTAGACGAGAGGATGCAGATCGAGCTTTACTTCCCGAACAAACTCCGTTCTATAAAGATCTGGTACTAGCATAGTTTTTGACTTATTTATTTTAGCTAATTTACATTTGAACATCAAGCATTAAAATATATTTCAATAGGCTGCCGTGGCTGTGCAATCAGGTGTTTGTGTAGACATATTTGCTGTGACAAATGAGTATACTGACTTGGCATCATTGAAGTTTCTGAGTATTGAGAGTGGAGGCTCCTTATTTTTGTATACGAGCACTGATGACTCCACACTTCCTCAAGACATGTGAGTATGCTACTTGCTATTGCTATGAATATGTAATGTAGGTGAATTTTGTAATCTAATTCATTCCTTAAGTCTGACCGCTCCCTCCACCACCCAAAAAGAAATGGAAAAGGAATACCACCGCCACAACACATCCCTCAAGTTTTTAGAACTGTACTCAAAAACCCCTTGATTAACTTTTCTCTCTCTTTTTGATGGACACACTGATTGCTTGTAATGAAAGTGTCCAGCTGACCATAAAATCTAACGCAAAAAGTAGCGCTGTGGCTTTGTTTCACAGAGACAATATGCAGAATATCCAGTTGGGTGTTTCTTCTTGCCGAACAAGCTTTCTTGGTTTTAACTTTCACCAATATGCACACTTAGATTTCCCCTTGCTAATTTGTGGATGCATCAACTAGGGATTCATATGAGAAGGTTCAATTGTGTGCCAACCTCTCTCATTAGGATAGCTCAACTTAGGGCATGAAATCCTAAGACCCTTCTTGATTTTAGCTTTTCCCCGTGATTGCGCATTCATTTTACTTCAAAGAGGACTGCTGAATAACGACATGCTGGTAATTGCTTAAGTTGGATTTGCTTTTCAGGAAGCTGCTGCGGTAATCTAGGGATGTGTCATATTTCTAGCTTTTTATTGTGGTTATTATTTATTACTTGATCTTATAAGGATGGTACCCTGTGCTGCTCCTGGAGTTTTTTCGTTTTTTCTCTTTATTGAGTGGCTATATTTTTCTTCTAATAGGTGTTCTTTTATGGCAAGGAAAACAGGCATCTGGCTTTTGGTTTAGCCAACTCAGAATATGTTTTCACTTTTTAACAGTTTCTTTCTCTTTCTTGTGTTGGGGATTAGTGGATAATTTTTTTTATGACATATCTTTTCAGTTTTAGTGGGTGCTTAGGACACCGAGCTGCCCTTTTCTTTTTATCTGACTTCCAGTTATAGTGTTGTTCTACATGCCTCCCCCCCCCCAGGATCTCAGATGGTGAATTGGTGATTTTTATATGTAAATAATAGATGACTGTTTGTTTGGGAAACATAAATCCTCAAATTTAAATCAGATATGTATGTAACAGCTAAAGTAAAGAAAAATAAAACAAAAGAGAAAGCAGGAGAGCAGTTTCTGGGAACTCGGTGTTTTTGAAATATATTTCGTGTTAAGTTTTGCGAATCTGAGGGATTTCGTTAATGTGATGTTGATATGAAGGATGTAAGTAAGCCTTAGGTGATGCCTGAAGGATTAGTTGGTCGAAGACTTGTCATTGACGGGTCATTTATTGAGTAAATGACTGGTTGTTAGCAGTATACAAATTTACACATTAGTAAGAATCATTTTTTTTGTTCCTGAGGTTACATTGATCTGTTTACATAACACTAGAATGATATTCTGACAGGTACCGCATGTTAAGTCGACCATATGCTTTTAATTGTGTCCTAAGGCTGAGGACTTCGTCTGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAGGTATGTCTTACTTGGCTTCATGTTTCTCTTCAACACAAATTCATCAGGGCTATTAACTGGACTATCTGATCTGTAGAAGTGAAGATACAACAACTTATGATGAACTTGCTGCACTTTGGTAGTTTGCCTATATGCATTATCTGAAAACCTCACCAACTGTTTGATCAGTTGGAAACTAGACTTCAAGAGTTCAATTTGTTTTCCAATATTACAACAAAATTCGATATAGATTATACCTATTAATGCATTGATATCACAATCTGGCAGACTGATTACAAACTTCACAAAAGTTTCTTTTTTGTCATAGGAAAAAATATGATAAAATGAGAGTTACTCTTTTGAAATGAGAGGAACTCTTGAAATGCCTCAAATCAAGTTGTAAGCTAAAACTATTTGGTAGAGTATTAGATATATCTGTCTAAGATCAAACATATCATGTCTTTCCTTGTTTGGTTTATATACTACAGTTGCCCCATTATTATTAATCATGCTTTCTGAATTGCAGGATAAGTTTACTCTTTACTTGTGCTGAATAATTCTCCTTGTTCTTAGGTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAGGTATTGATATATTTCATGTGGGTTATTTTCTTACTTAGCTCATAAGATTAGAGTTTCAGTTCTTTAATTCCTCGGTTTTCTTTTTTTTTTTTTTGGGGGGGGGGGGGGGTTATATTGGATATGGGAAGAGATTATGACATTGGAATAAACTAATTTAGCTACTGAATACTTGTTTTTAAGTTTCAACTCGAAATAAGATATGCAGAACGCATTCTTAGGTAAATGTTTGCTTGGAAACTAAGGGAAGGAAAAGAAAAGGAAAGTAGAAAGAAGGAAAAGAGGCTGCTAGCAGAAGCAATGTGAGAAGGGACTGTTTAGACAACAAAATTTGAAAAAAGGGAGGAGCTTTTAGACAAATCTGATCTATGACAATGGGATAAGATGGCAGTATGCTTTTCGAAGTTGGAGTTCAGTATTGTATGAAGGAACTATATCAGAGAGTTTTAAGACTTCCGAGGAAAGAGCAAGAGAGTGATGAACAACCCTAGTCTTAGAAAAAGGCCAAAGGGTCAGAAAGGGAAATTATCTCTCCAATTCTTTGCTGTAGGCAGACATGAGAAGGGAAAGTCTTGTAGTTCTCTCTTCCCTTCTCCAGTTGACAAAAGCATGGTTATGAAAATATTATGCATGAATGGACTTGTCATATAATTCGTTGGGTAAGTTCTCATATACATATAACTTATAAGGTTATCTTTCTATGCAACTTTTGGGATTTGAATATGTAAGTCTCTTTGGAAGTCTCTTCAAGTATCCTACTGAAAGAGGTATCTGGTAATACTTCAAAAGTCTGGATTAAAGGGATCAAAGTTCAAGTATAGTTTTTTTAGCACTACCTAGTTTAGTATGGTTATGGACATAGACACATAGTGATACCAAACTTTTTTTTCCGTTCACAAAGACGCAAAGTTCTTCATTAACTTGTTATCTAGTAAAAGATGAACTATCATCTCTGGAGTGACACGTGTAGTATTTACATCTTACTCTAAAAGATTTGGTCAAATAGAGATGCCACCTTATTTCAGTTTTCTGCTTAAAACATATCTTCAACAGTTCATTGGGTTATAATGGTGGTATACATAAGAGAACTTTATATGTTGTCTCTGGAGTGCACACAATCACAGTATCTGTCACTACATAAAAAGATAAAAGAAGAGAAAGAGGAAATATGGCCTTTCAACTTATGTTTAAATGATGACCGTCACTCCTTGTATTGTGATATTTTGATTTGCTGTCAATTTTTTGTGGGGTGATGGGTGGTAAATCTTATTGTTAACGACTTTGGACTTTTGATGCAGTGCACTAGAACCTTCTTCTCTTAGTCGTGCTGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACTGTAAGTAACAAATATCTTCTCACTGTTACATTAGGTATCACTGGAACCTTAATGGTGCATTTTTGAGATGTGAACTTTGATGTTGATAACCAGGTTTACTGAGAACAACAATAAACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAA</genome_strand>
        <mrna_strand>CTCTAATCTCACGCGCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACGTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCA..........................................................................................................................................................................................................TGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAG.........................................................................................CTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTCAAGGCCCCATTCCAGTGGTGAAGAATGTTTTCATTCCTCATGATTCTGATGGTACCTTGTCTATGGAACTTCAGGATGTCATGCCCCTATCTTCATTCTTAGCTCCA..........................................................................................................................GTGGATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTTTTGGATCTGCAATGGAAGCCCTTTTCAATTATATTGGATCAGAATATGGAGATACATTTGCATTAG..................................................................................................................................................................................................................................................CTAGAGTTTTTGCTTTTCTTTCGGGTGCTCCTGATATTGGAGCTGGCCAACTAGATACAAGACGATATGGAGAGCAGTACGCTAGTAGACGAGAGGATGCAGATCGAGCTTTACTTCCCGAACAAACTCCGTTCTATAAAGATCTG.............................................................................GCTGCCGTGGCTGTGCAATCAGGTGTTTGTGTAGACATATTTGCTGTGACAAATGAGTATACTGACTTGGCATCATTGAAGTTTCTGAGTATTGAGAGTGGAGGCTCCTTATTTTTGTATACGAGTACTGATGACTCCACACTTCCTCAAGACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCATGTTAAGTCGACCATATGCTTTTAATTGTGTCCTAAGGCTGAGGACTTCGTCTGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATAATTTTGAGTTTGTGAATGATGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGATTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCTAGCCTCGTTGGAGCAAGGCGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGAGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTAGAACCTTCTTCTCTTAGTCGTGCGGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCAATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACT.............................................................................................GTTTACTGAGAACAACAATAAACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGACGTTTGAGAATTATCTAATAGAGGAACAAGATGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACAGGAAGTAGCTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACGAAGGGTTACATGTAGCATCACAGTAAGTGTTTCTGACTTGCTCAGAGCAGTTGTACCGGTGTCACCACCCAAGACCGTATCGTTATATGTTTCCCTGTTCAGCTTTAGACAGTAGATTTACTCATTCAAAATTTGTACCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546189" ref_strand="+" ref_description="SGN-E546189 [TUS-69-G20]">
      <seq>ctctaatctcacgcgctaatggcggtgcgtgcaacggttactcggtttccgattgacgtagagtcactaatggactcagggctaccgtggggtgtaacagtttcaccgtttgctgcaaaggatgagaatgggaatccaccggtttatggatcggaaggtcacttgctaccgcgatgtgagaattgttgggcttactataatacatactgtgagcaagagcaatgggcttggacttgttccctttgtggtacacttaatggactatcttctcagtctgtcagtcgttattctcaacctgaatcttgcccggagaatatgtcttcgtttattgaccttgaattgcccatggaagaatctgaggaaatgcaggcacggcctgtttatgtagcagctgttgatcttgcttcatccgaggagtttttggaacttgttaaaagtgcccttttagctgctttagaagctcttgggcctggatcactatttggcttggccacattcagccataaaataggtttgtatgatgttcaaggccccattccagtggtgaagaatgttttcattcctcatgattctgatggtaccttgtctatggaacttcaggatgtcatgcccctatcttcattcttagctccagtggatacttgtaaggaccgcatagcgtcagcactttgaacattgangcccaacacttcatgggaaaggacatcangtgcangtcaagggctagatggagctttccctggtgaagggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="118181" stop="121505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118481" g_stop="118826" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118827" i_stop="119028" i_length="202">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119029" g_stop="119088" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="406" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119089" i_stop="120645" i_length="1557">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120646" g_stop="120699" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="460" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120700" i_stop="120788" i_length="89">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120789" g_stop="120961" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="633" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120962" i_stop="121083" i_length="122">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121084" g_stop="121204" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="754" r_length="121" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E546189" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118481" e_stop="118826"/>
          <exon e_start="119029" e_stop="119088"/>
          <exon e_start="120646" e_stop="120699"/>
          <exon e_start="120789" e_stop="120961"/>
          <exon e_start="121084" e_stop="121204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAATCTCACGCGCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACCTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCAGTAAGTGTGTAATTTAGACACCCTTTACTGTAAATCTGGCATTTGGGTATTTTTTGTATTTGAAAACACCCTTTTATGTAATTTTGGAAATTCAAATGTATCCATTTGATGTGAATTTTTGTATTTGAAAACACCTTTTGTCTTATTTTGAGAATTCAGATGCACCCTTTTGAATTTTGTTTGTTTTTTGATGGTGGTGCAGTGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTTGTAAGTTTCTGGCTTATTATTTTTGCTTTGATTTGATGTAGTACTATTACATTGTTTCCTTTCGAGAATCAAAGAAGTCTTTCCGACTTTGAGTTTTGCTGAATTTTTGTTTATCGATTGATAATTTGCTGAAATGTTTTATTTTAAGTTCAAAATATGGTCTGTGGTACTATTCTGTGAAGTTTCCAAGTATAAAACTTTTATTTTGAAAAAGAAGTCAAGGTATTGACTGGTCGAAAACAACCAAAACTCAGTTGGTTTGTTGAGGTTTATGGGAATGGAAGTGCTGTGCCTTGTTGAGTTTTTAAAGAGAATTTTAAGTGCTGTGACTTTTTAGGAGTTCGTAAAGGATGGATGCCATATCTTAACATTGAAGAATCCTAGAGACAAGATACTTGCAAGCATTTCTCCAAAGGTTTTATGCTATATTTTTATTGATGAAAACATAGGTGAAGCTAAAATCTTAACTAAGAATTTATCACTAATTTTTATTTGGCAAACTAGTTTGTTATGATGTGAGTGTCTCTCACACATCTTTATATGTTAGTATTGGTGCTTCTAAGACACAGTAGTTAACATTCATTATAATTGGGTAAGAAACCTGTATTGGCTTGTATACTTTTCATGAATAACCTTTGCTCCTACCAAGGATGTCTCACTTGTCATATTATTACATCTCAAATTGTTGTTCACTTTTATCATGTGGAGAACTTTCCATTGCTATCAGTTTACCTATTAGATGTTATACATCAAAAATTGGCTAGACCTCTTTTTTTTCTCTTTCCTAATTCAAACTTACAAAAATAACTATTTTACTTAGGTTCAGTTAATTTTAGGAATCACCTAGCATAAGAGTATTTATTTCATAGCTTTATCAAGAAAAAGGTATTCATTTGGTATAGCTGTCTGGTTATTAGCTTAGTTATTGAATACCATATCCAAGTCATGTAGAAGAATGTCATATCATTATTATGAATAAAACATGTTCATTTGTCAATATTGTTAAACTCAAAGTCTGGTCCATCAATTTTTGAAACCACACAATATTAAGTGCTCATTAATACCTATTTGTTATTGGCTTATTTGTTGAATATCATATTTCTGTCATGTGGACGAATGTAATATCACTCGATTATCATGCATGGATTAAGTGCTTTATTCTCAAAGTTTTGTTATAAATTATCTCAATACTTGTTGATTTGCCTTTGGTCTTAACGTGCTCAGTTAATTTCCTGAAAGAACTTAAAAGCTCGGTGATTCTTGTTTCAGTGTGTATGTCAAAATAGTTGAAACTCATGTTAAAGAAAAAGGTAAAAATAGCTGAAACTGGATCGTAGTCTCAAAGCACACTCAGGCACATATAATATTAATGCATATTTGTGTATACACCATCATAGTTAAATTTTTTTTGACATCAATCTTCACTTTGCGTACTGTATTTCTGCTGATCATTTAGAGCTATCTTAGGTTTTACAGTAATAACTGATGTATTTTGTGGTAAGAAGATATGTAGAATGTTTGCTATTATGAATTAACTGGTGTGAAGTTCTGACGCAGCATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAGGTTGGTTATTGATGAATCTTTTGAATATAAGTTTATACTCTGTACTGGAGGGAATTTAAAATTTTGTTTTCTTTTGTCTTTTTATCAAGCTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTCAAGGCCCCATTCCAGTGGTGAAGAATGTTTTCATTCCTCATGATTCTGATGGTACCTTGTCTATGGAACTTCAGGATGTCATGCCCCTATCTTCATTCTTAGCTCCAGTACGTTTGTTTAATTTCTTTGCCAATGCTTTTCTTTTTCTAGTTGGAGTGTGAAGGTGTTCCCTTTTTCAATGTCAAAATGGATGAGCATGCACTAGCCCTAAATCAGTGATTTATTGTAGGTGGATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTT</genome_strand>
        <mrna_strand>CTCTAATCTCACGCGCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACGTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCA..........................................................................................................................................................................................................TGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAG.........................................................................................CTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTCAAGGCCCCATTCCAGTGGTGAAGAATGTTTTCATTCCTCATGATTCTGATGGTACCTTGTCTATGGAACTTCAGGATGTCATGCCCCTATCTTCATTCTTAGCTCCA..........................................................................................................................GTGGATACTTGTAAGGACCGCATAGCGTCAGCACTTTGAACATTGANGCCCAACACTTCATGGGAAAGGACATCANGTGCANGTCAAGGGCTAGATGGAGCTTTCCCTGGTGAAGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358533" ref_strand="+" ref_description="SGN-E358533 [cLHT-22-A12]">
      <seq>tctaatctcacgccgcctaatggcggtgcgtgcaacggttactcggtttccgattgacgtagagtcactaatggactcagggctaccgtggggtgtaacagtttcaccgtttgctgcaaaggatgagaatgggaatccaccggtttatggatcggaaggtcacttgctaccgcgatgtgagaattgttgggcttactataatacatactgtgagcaagagcaatgggcttggacttgttccctttgtggtacacttaatggactatcttctcagtctgtcagtcgttattctcaacctgaatcttgcccggagaatatgtcttcgtttattgaccttgaattgcccatggaagaatctgaggaaatgcaggcacggcctgtttatgtagcagctgttgatcttgcttcatccgaggagtttttggaacttgttaaaagtgcccttttagctgctttagaagctcttgggcctggatcactatttggcttggccacattcagccataaaataggtttgtatgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="118182" stop="121154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118482" g_stop="118826" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118827" i_stop="119028" i_length="202">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119029" g_stop="119088" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="407" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119089" i_stop="120645" i_length="1557">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120646" g_stop="120699" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="461" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120700" i_stop="120788" i_length="89">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120789" g_stop="120854" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="527" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E358533" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118482" e_stop="118826"/>
          <exon e_start="119029" e_stop="119088"/>
          <exon e_start="120646" e_stop="120699"/>
          <exon e_start="120789" e_stop="120854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATCTCACG-CG-CTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACCTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCAGTAAGTGTGTAATTTAGACACCCTTTACTGTAAATCTGGCATTTGGGTATTTTTTGTATTTGAAAACACCCTTTTATGTAATTTTGGAAATTCAAATGTATCCATTTGATGTGAATTTTTGTATTTGAAAACACCTTTTGTCTTATTTTGAGAATTCAGATGCACCCTTTTGAATTTTGTTTGTTTTTTGATGGTGGTGCAGTGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTTGTAAGTTTCTGGCTTATTATTTTTGCTTTGATTTGATGTAGTACTATTACATTGTTTCCTTTCGAGAATCAAAGAAGTCTTTCCGACTTTGAGTTTTGCTGAATTTTTGTTTATCGATTGATAATTTGCTGAAATGTTTTATTTTAAGTTCAAAATATGGTCTGTGGTACTATTCTGTGAAGTTTCCAAGTATAAAACTTTTATTTTGAAAAAGAAGTCAAGGTATTGACTGGTCGAAAACAACCAAAACTCAGTTGGTTTGTTGAGGTTTATGGGAATGGAAGTGCTGTGCCTTGTTGAGTTTTTAAAGAGAATTTTAAGTGCTGTGACTTTTTAGGAGTTCGTAAAGGATGGATGCCATATCTTAACATTGAAGAATCCTAGAGACAAGATACTTGCAAGCATTTCTCCAAAGGTTTTATGCTATATTTTTATTGATGAAAACATAGGTGAAGCTAAAATCTTAACTAAGAATTTATCACTAATTTTTATTTGGCAAACTAGTTTGTTATGATGTGAGTGTCTCTCACACATCTTTATATGTTAGTATTGGTGCTTCTAAGACACAGTAGTTAACATTCATTATAATTGGGTAAGAAACCTGTATTGGCTTGTATACTTTTCATGAATAACCTTTGCTCCTACCAAGGATGTCTCACTTGTCATATTATTACATCTCAAATTGTTGTTCACTTTTATCATGTGGAGAACTTTCCATTGCTATCAGTTTACCTATTAGATGTTATACATCAAAAATTGGCTAGACCTCTTTTTTTTCTCTTTCCTAATTCAAACTTACAAAAATAACTATTTTACTTAGGTTCAGTTAATTTTAGGAATCACCTAGCATAAGAGTATTTATTTCATAGCTTTATCAAGAAAAAGGTATTCATTTGGTATAGCTGTCTGGTTATTAGCTTAGTTATTGAATACCATATCCAAGTCATGTAGAAGAATGTCATATCATTATTATGAATAAAACATGTTCATTTGTCAATATTGTTAAACTCAAAGTCTGGTCCATCAATTTTTGAAACCACACAATATTAAGTGCTCATTAATACCTATTTGTTATTGGCTTATTTGTTGAATATCATATTTCTGTCATGTGGACGAATGTAATATCACTCGATTATCATGCATGGATTAAGTGCTTTATTCTCAAAGTTTTGTTATAAATTATCTCAATACTTGTTGATTTGCCTTTGGTCTTAACGTGCTCAGTTAATTTCCTGAAAGAACTTAAAAGCTCGGTGATTCTTGTTTCAGTGTGTATGTCAAAATAGTTGAAACTCATGTTAAAGAAAAAGGTAAAAATAGCTGAAACTGGATCGTAGTCTCAAAGCACACTCAGGCACATATAATATTAATGCATATTTGTGTATACACCATCATAGTTAAATTTTTTTTGACATCAATCTTCACTTTGCGTACTGTATTTCTGCTGATCATTTAGAGCTATCTTAGGTTTTACAGTAATAACTGATGTATTTTGTGGTAAGAAGATATGTAGAATGTTTGCTATTATGAATTAACTGGTGTGAAGTTCTGACGCAGCATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAGGTTGGTTATTGATGAATCTTTTGAATATAAGTTTATACTCTGTACTGGAGGGAATTTAAAATTTTGTTTTCTTTTGTCTTTTTATCAAGCTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTC</genome_strand>
        <mrna_strand>TCTAATCTCACGCCGCCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACGTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCA..........................................................................................................................................................................................................TGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAG.........................................................................................CTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314620" ref_strand="+" ref_description="SGN-E314620 [cTOA-20-F17]">
      <seq>atacttgtaaggaccgcatagcgtcagcacttgaaacattgaggccaacaacttcatgggaaaggacatcaggtgcaggtcaagggctagatggagctttcctgggtggaaggggttttggatctgcaatggaagcccttttcaattatattggatcagaatatggaaatacatttgcattagctagagtttttgcttttctttcgggtgctcccgatattggagctggccaactagatacaagacgatatggagagcagtacgctagtagacgagaggatgcagatcgagctttacttcccgaacaaactccgttctataaagatctggctgccgtggctgtgcaatcaggtgtttgtgtagacatatttgctgtgacaaatgagtatactgacttggcatcattgaagtttctgagtattgagagtggaggctccttatttttgtatacgagcactgatgactccacacttcctcaagacatgtaccgcatgttaagtcgaccatatgcttttaattgtgtcctaaggctgangacttcgtctgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccnacacataatttgttgtgattctttcgcgacatatgccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="120788" stop="123830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121088" g_stop="121270" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121271" i_stop="121512" i_length="242">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121513" g_stop="121658" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="329" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121659" i_stop="121735" i_length="77">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121736" g_stop="121890" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="484" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121891" i_stop="123282" i_length="1392">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123283" g_stop="123364" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="566" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.724" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123451" g_stop="123530" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="646" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E314620" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121088" e_stop="121270"/>
          <exon e_start="121513" e_stop="121658"/>
          <exon e_start="121736" e_stop="121890"/>
          <exon e_start="123283" e_stop="123364"/>
          <exon e_start="123451" e_stop="123530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTTTTGGATCTGCAATGGAAGCCCTTTTCAATTATATTGGATCAGAATATGGAAATACATTTGCATTAGGTATGACAATTTCACACTTCTGTCTTTGTGTCAGTTACAATGAATGATTCTTTCTTTGTATCAGTTACAATGAATGATGCACCTCTAGTTAGGTTGGTTTTTGTTACCGTTTGGATCAACCTTTTTCCAATGTGGACAGCTGCAATATGAGAATATTTCCCCTAAATTAGTAGTTCCATAGTATCTTGCCCAAAGATATAATACTCAGTGTCTTTGTTGTTCTTTCCCCAATTGGAATGCAGCTAGAGTTTTTGCTTTTCTTTCGGGTGCTCCCGATATTGGAGCTGGCCAACTAGATACAAGACGATATGGAGAGCAGTACGCTAGTAGACGAGAGGATGCAGATCGAGCTTTACTTCCCGAACAAACTCCGTTCTATAAAGATCTGGTACTAGCATAGTTTTTGACTTATTTATTTTAGCTAATTTACATTTGAACATCAAGCATTAAAATATATTTCAATAGGCTGCCGTGGCTGTGCAATCAGGTGTTTGTGTAGACATATTTGCTGTGACAAATGAGTATACTGACTTGGCATCATTGAAGTTTCTGAGTATTGAGAGTGGAGGCTCCTTATTTTTGTATACGAGCACTGATGACTCCACACTTCCTCAAGACATGTGAGTATGCTACTTGCTATTGCTATGAATATGTAATGTAGGTGAATTTTGTAATCTAATTCATTCCTTAAGTCTGACCGCTCCCTCCACCACCCAAAAAGAAATGGAAAAGGAATACCACCGCCACAACACATCCCTCAAGTTTTTAGAACTGTACTCAAAAACCCCTTGATTAACTTTTCTCTCTCTTTTTGATGGACACACTGATTGCTTGTAATGAAAGTGTCCAGCTGACCATAAAATCTAACGCAAAAAGTAGCGCTGTGGCTTTGTTTCACAGAGACAATATGCAGAATATCCAGTTGGGTGTTTCTTCTTGCCGAACAAGCTTTCTTGGTTTTAACTTTCACCAATATGCACACTTAGATTTCCCCTTGCTAATTTGTGGATGCATCAACTAGGGATTCATATGAGAAGGTTCAATTGTGTGCCAACCTCTCTCATTAGGATAGCTCAACTTAGGGCATGAAATCCTAAGACCCTTCTTGATTTTAGCTTTTCCCCGTGATTGCGCATTCATTTTACTTCAAAGAGGACTGCTGAATAACGACATGCTGGTAATTGCTTAAGTTGGATTTGCTTTTCAGGAAGCTGCTGCGGTAATCTAGGGATGTGTCATATTTCTAGCTTTTTATTGTGGTTATTATTTATTACTTGATCTTATAAGGATGGTACCCTGTGCTGCTCCTGGAGTTTTTTCGTTTTTTCTCTTTATTGAGTGGCTATATTTTTCTTCTAATAGGTGTTCTTTTATGGCAAGGAAAACAGGCATCTGGCTTTTGGTTTAGCCAACTCAGAATATGTTTTCACTTTTTAACAGTTTCTTTCTCTTTCTTGTGTTGGGGATTAGTGGATAATTTTTTTTATGACATATCTTTTCAGTTTTAGTGGGTGCTTAGGACACCGAGCTGCCCTTTTCTTTTTATCTGACTTCCAGTTATAGTGTTGTTCTACATGCCTCCCCCCCCCCAGGATCTCAGATGGTGAATTGGTGATTTTTATATGTAAATAATAGATGACTGTTTGTTTGGGAAACATAAATCCTCAAATTTAAATCAGATATGTATGTAACAGCTAAAGTAAAGAAAAATAAAACAAAAGAGAAAGCAGGAGAGCAGTTTCTGGGAACTCGGTGTTTTTGAAATATATTTCGTGTTAAGTTTTGCGAATCTGAGGGATTTCGTTAATGTGATGTTGATATGAAGGATGTAAGTAAGCCTTAGGTGATGCCTGAAGGATTAGTTGGTCGAAGACTTGTCATTGACGGGTCATTTATTGAGTAAATGACTGGTTGTTAGCAGTATACAAATTTACACATTAGTAAGAATCATTTTTTTTGTTCCTGAGGTTACATTGATCTGTTTACATAACACTAGAATGATATTCTGACAGGTACCGCATGTTAAGTCGACCATATGCTTTTAATTGTGTCCTAAGGCTGAGGACTTCGTCTGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTA</genome_strand>
        <mrna_strand>ATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTTTTGGATCTGCAATGGAAGCCCTTTTCAATTATATTGGATCAGAATATGGAAATACATTTGCATTAG..................................................................................................................................................................................................................................................CTAGAGTTTTTGCTTTTCTTTCGGGTGCTCCCGATATTGGAGCTGGCCAACTAGATACAAGACGATATGGAGAGCAGTACGCTAGTAGACGAGAGGATGCAGATCGAGCTTTACTTCCCGAACAAACTCCGTTCTATAAAGATCTG.............................................................................GCTGCCGTGGCTGTGCAATCAGGTGTTTGTGTAGACATATTTGCTGTGACAAATGAGTATACTGACTTGGCATCATTGAAGTTTCTGAGTATTGAGAGTGGAGGCTCCTTATTTTTGTATACGAGCACTGATGACTCCACACTTCCTCAAGACAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCATGTTAAGTCGACCATATGCTTTTAATTGTGTCCTAAGGCTGANGACTTCGTCTGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCNACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375122" ref_strand="+" ref_description="SGN-E375122 [TUS-36-O1]">
      <seq>tgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgactgtgttgattctgaagtggtgctttcattacttgtccacaaggttattctagcctcgttggagcaaggtgttcgagagggcagaatgttacttcatgattggcttgttattcttacagctcagtataatgatgcttgtaaacttattcagtctgggcatggtggttcaagtggcgttcacattgatgttgcattttcccaatgtcctcaactgcagcctttaccccgcttggtttttgctctattacgaaatcctcttctccgtttacacgaagaaggcgtgcatcctgactaccgaatatatcttcagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123043" stop="126954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123343" g_stop="123364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="138" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="237" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125708" g_stop="125831" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="361" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126384" g_stop="126654" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="632" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E375122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123343" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125831"/>
          <exon e_start="126384" e_stop="126654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAGGTATGTCTTACTTGGCTTCATGTTTCTCTTCAACACAAATTCATCAGGGCTATTAACTGGACTATCTGATCTGTAGAAGTGAAGATACAACAACTTATGATGAACTTGCTGCACTTTGGTAGTTTGCCTATATGCATTATCTGAAAACCTCACCAACTGTTTGATCAGTTGGAAACTAGACTTCAAGAGTTCAATTTGTTTTCCAATATTACAACAAAATTCGATATAGATTATACCTATTAATGCATTGATATCACAATCTGGCAGACTGATTACAAACTTCACAAAAGTTTCTTTTTTGTCATAGGAAAAAATATGATAAAATGAGAGTTACTCTTTTGAAATGAGAGGAACTCTTGAAATGCCTCAAATCAAGTTGTAAGCTAAAACTATTTGGTAGAGTATTAGATATATCTGTCTAAGATCAAACATATCATGTCTTTCCTTGTTTGGTTTATATACTACAGTTGCCCCATTATTATTAATCATGCTTTCTGAATTGCAGGATAAGTTTACTCTTTACTTGTGCTGAATAATTCTCCTTGTTCTTAGGTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTC</genome_strand>
        <mrna_strand>TGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233192" ref_strand="+" ref_description="SGN-E233192 [cLED-6-N21]">
      <seq>tgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgactgtgttgattctgaagtggtgctttcattacttgtccacaaggttattctagcctcgttggagcaaggtgttcgagagggcagaatgttacttcatgattggcttgttattcttacagctcagtataatgatgcttgtaaacttattcagtctgggcatggtggttcaagtggcgttcacattgatgttgcattttcccaatgtcctcaactgcagcctttaccccgcttggtttttgctctattacgaaatcctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123043" stop="126900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123343" g_stop="123364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="138" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="237" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125708" g_stop="125831" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="361" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126384" g_stop="126600" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="578" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E233192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123343" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125831"/>
          <exon e_start="126384" e_stop="126600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAGGTATGTCTTACTTGGCTTCATGTTTCTCTTCAACACAAATTCATCAGGGCTATTAACTGGACTATCTGATCTGTAGAAGTGAAGATACAACAACTTATGATGAACTTGCTGCACTTTGGTAGTTTGCCTATATGCATTATCTGAAAACCTCACCAACTGTTTGATCAGTTGGAAACTAGACTTCAAGAGTTCAATTTGTTTTCCAATATTACAACAAAATTCGATATAGATTATACCTATTAATGCATTGATATCACAATCTGGCAGACTGATTACAAACTTCACAAAAGTTTCTTTTTTGTCATAGGAAAAAATATGATAAAATGAGAGTTACTCTTTTGAAATGAGAGGAACTCTTGAAATGCCTCAAATCAAGTTGTAAGCTAAAACTATTTGGTAGAGTATTAGATATATCTGTCTAAGATCAAACATATCATGTCTTTCCTTGTTTGGTTTATATACTACAGTTGCCCCATTATTATTAATCATGCTTTCTGAATTGCAGGATAAGTTTACTCTTTACTTGTGCTGAATAATTCTCCTTGTTCTTAGGTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTC</genome_strand>
        <mrna_strand>TGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240114" ref_strand="+" ref_description="SGN-E240114 [cLED-32-K20]">
      <seq>tgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgactgtgttgattctgaagtggtgctttcattacttgtccacaaggttattctagcctcgttggagcaaggtgttcgagagggcagaatgttacttcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123043" stop="126740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123343" g_stop="123364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="138" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="237" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125708" g_stop="125831" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="361" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126384" g_stop="126440" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E240114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123343" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125831"/>
          <exon e_start="126384" e_stop="126440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAGGTATGTCTTACTTGGCTTCATGTTTCTCTTCAACACAAATTCATCAGGGCTATTAACTGGACTATCTGATCTGTAGAAGTGAAGATACAACAACTTATGATGAACTTGCTGCACTTTGGTAGTTTGCCTATATGCATTATCTGAAAACCTCACCAACTGTTTGATCAGTTGGAAACTAGACTTCAAGAGTTCAATTTGTTTTCCAATATTACAACAAAATTCGATATAGATTATACCTATTAATGCATTGATATCACAATCTGGCAGACTGATTACAAACTTCACAAAAGTTTCTTTTTTGTCATAGGAAAAAATATGATAAAATGAGAGTTACTCTTTTGAAATGAGAGGAACTCTTGAAATGCCTCAAATCAAGTTGTAAGCTAAAACTATTTGGTAGAGTATTAGATATATCTGTCTAAGATCAAACATATCATGTCTTTCCTTGTTTGGTTTATATACTACAGTTGCCCCATTATTATTAATCATGCTTTCTGAATTGCAGGATAAGTTTACTCTTTACTTGTGCTGAATAATTCTCCTTGTTCTTAGGTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGAT</genome_strand>
        <mrna_strand>TGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231193" ref_strand="+" ref_description="SGN-E231193 [cLED-5-K2]">
      <seq>tgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgactgtgttgattctgaagtggtgctttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123043" stop="126117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123343" g_stop="123364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="138" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="237" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125708" g_stop="125817" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="347" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E231193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123343" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCAT</genome_strand>
        <mrna_strand>TGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233217" ref_strand="+" ref_description="SGN-E233217 [cLED-6-A21]">
      <seq>tgaattccagcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123043" stop="125396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123343" g_stop="123364" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="138" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125096" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="223" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E233217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123343" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCCAGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCA</genome_strand>
        <mrna_strand>TGAATTCCAGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378592" ref_strand="+" ref_description="SGN-E378592 [TUS-36-O1]">
      <seq>agcagagtcattcttatgggcatttcttcccagatccacaatatgaaaatgtccaacacataatttgttgtgattctttcgcgacatatgcctatgattttgagtttgtgaatagtgctggattttccaggcatacttcagaattgcctatgctgcaaattgcttttcagtatactgttgttgtcccaccagatgaactagcaaatgcaggatcaaatactacaacaagagcaaagcattctctcaaaaagagattaaggattcgaactcttcagtttggagtaggtcatagcataaatgagatttatgactgtgttgattctgaagtggtgctttcattacttgtccacaaggttattctagcctcgttggagcaaggtgttcgagagggcagaatgttacttcatgattggcttgttattcttacagctcagtataatgatgcttgtaaacttattcagtctgggcatggtggttcaagtggcgttcacattgatgttgcattttcccaatgtcctcaactgcagcctttaccccgcttggtttttgctctattacgaaatcctcttctccgtttacacgaagaaggcgtgcatcctgactaccgaatatatcttcagtgtctttttagtgcactagaaccttcttctcttagtcgtgctgtatatccattgttaacctcatatgcctcaccggataagcaagcatatcctcgacattccctcagccgagctgcactgattacaagtggcagttcgatatttttccttgatgcattcacaaatctcatttgtgtctatgcttcgacagcagaaccttcacttccgtttcgccacctcaggactgtttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="123151" stop="128473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123351" g_stop="123364" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.724" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123451" g_stop="123566" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="130" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125012" g_stop="125110" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="229" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="125708" g_stop="125831" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="353" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="126384" g_stop="126661" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="631" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="126662" i_stop="127956" i_length="1295">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127957" g_stop="128171" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="845" r_length="214" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="128172" i_stop="128264" i_length="93">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="128265" g_stop="128272" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="853" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E378592" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123351" e_stop="123364"/>
          <exon e_start="123451" e_stop="123566"/>
          <exon e_start="125012" e_stop="125110"/>
          <exon e_start="125708" e_stop="125831"/>
          <exon e_start="126384" e_stop="126661"/>
          <exon e_start="127957" e_stop="128171"/>
          <exon e_start="128265" e_stop="128272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGTCATTCTGTAAGATTTCTTCTAGTATTTTTTTCCCACCGGTTCTTATTCTACTATCTTGATTGGCTCATAAGACTTGCACTATTTCCCAACAGTATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAGGTAATACATCTCCTACTTCTTGTCTCCTTTTCCAAATTAAGTTTTATGCTCATTGTTTTATTTCACACAAAGATTACATGAAACTATGTTTGGCTAGAGAATTGATACTTCATCTCTTTGCATTAGAAACCACATTTGATTAAAGTAGTGCTATTGGCCCCTTTAGCGAAGCTGTATGTTGGCCTTACTGACATTTTTGAAGTATTGTTTTCTCCATTCCAATATCTCTGACACTTCTCATTTTGGTACATTTTTGAACGTTTGACATGGTCCTAAAGGAACATTGTGTATATAACTTAGACTAGTTCGACAAATTATATTCACTAACAATTTAAATTCAATTTAGGATGTAAGGTTCTCTCATAAACCCCAGACTCTGTGTTTTGGAAAAAAGTAATAAATTTTATTAAATATATGGGCACAAAACCCCTTGTATCAAGAAGTATACCAAAAGTAGGAAACTTAGAAAAAGATATGTTTTTCTATGTCTGGCACACAATCTTTTATACAAAAGGAATCTCATGGGTGCACCAAAAGAATATACTCCCCTGTTCCTTTCTATTTGTCATGGTTTCCCTTTTTAGAGTCAAACGATATGAAGTTAAGAACTTTGACTAACATTTTAAATGTATCTTTTCATCATATGATATGCAAAAAAATTGCAATCTATAGTATTTCTTGCAGTGTTATTGAATATGTAAATTTTTAGTTTAAAATGTTGAATCAAGGTAACTTAATTTAGCATTGAAAATTAGTCAAATTAACTTTTGAAAAGCGCAACATGACAACTAAAAGGAGAAGGGAGTACATGATAAGAGGCTGTTCCTCAATTGTACAAAGTTCATCTCTATACTTTCAACAACTCTGCTATTCCTTCCCTCCAAAGAATCCACTAAGTGTGGAGCAGCATTCCATGCCTTGTGCCTCCACATTCACCTACCTTAATCCCAACTGACCAATATATGCCGTGATATTATACATGTTGAACAAATAAATAAAAATTATACATGTTGAACATCTGATGCAGTCGCAGACTATCACAATTTGGAGGATTACCGAGCTGGAAGAGAGTAGATAAAAGATGTGGAAGACTGTTCTTAAAAAATCATTACAAACCATCAAAATCTCTTCCTTTTTTTTGGTTGTAAAGGAATTATTTGTTGCATAGATTAGGGAAGTCTGAAATATACATGTATTAGCTTTATGTATAGCAGAACCATCTTCATGTGTTAATAAAGTTATCTGATTAAAATAAGTTTGGTAGATACATACTGATAACTATATCATTTTCGAAGTTCATTTATTTTCTTTATTTTCTGCTCTGGGCCAATTTCTTTATGTGTTCCACTGCATCTTGTAAGCATTATTTTTGCCAATGTCAGTGAAAATCATTTGTGTGAGCTAGAATTTTTACGGAATAATACAAGAATGGTTTTCTTCTGCAGGCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAGGTAACAGTGTTCTTACTAGAGGCCTTTTTGCTGCTTTACTACCTTTCAGGTAGCAGTGACCATCAACAAATATGTTTCTTATATAAATATGAGTATTGATTCTCACCTAGTAGAACTCAAAAAAACAAGAACCATAAAGTATGTCATTATACTAGACAAGTGGCTGGGCAGAAGTTTGGTTCTAGTTCGCCCTTGGTGGTTGGGTGCTTAAATGTTTTAGCAGTGTATTTTTGAAGAGCCACCTATTATATATGGTGTTTGGTACCTCTTTGTTCCCAATTTAAAAGTTGATTCAATTTAAAATTATGCAAGTGAACTAAGTACTTAGACAGCAAATGGATGGTGGTTCTAGAAGTAGAGAATTCTGGAATTAATGTTTGTCTGAATTGCAGTTGGATCTGGCCATTTCTTAGTTATGTTGCATTACTGTAGTTTCTCTTTACTTTCTTTTTCTTCTTTAATTCTAAAACATTTTCTATAATTTGTGGTTCTCTAGCTTTGAGCCAGGAAAAACTCCTTTTGCTGTTCTTTTTCTGATGGATACCCTTTGAATCATCTTCTATTAGATATGCTCTAAGCAGTGGATGTGTTGTGCAGAGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAGGTATGTCTTACTTGGCTTCATGTTTCTCTTCAACACAAATTCATCAGGGCTATTAACTGGACTATCTGATCTGTAGAAGTGAAGATACAACAACTTATGATGAACTTGCTGCACTTTGGTAGTTTGCCTATATGCATTATCTGAAAACCTCACCAACTGTTTGATCAGTTGGAAACTAGACTTCAAGAGTTCAATTTGTTTTCCAATATTACAACAAAATTCGATATAGATTATACCTATTAATGCATTGATATCACAATCTGGCAGACTGATTACAAACTTCACAAAAGTTTCTTTTTTGTCATAGGAAAAAATATGATAAAATGAGAGTTACTCTTTTGAAATGAGAGGAACTCTTGAAATGCCTCAAATCAAGTTGTAAGCTAAAACTATTTGGTAGAGTATTAGATATATCTGTCTAAGATCAAACATATCATGTCTTTCCTTGTTTGGTTTATATACTACAGTTGCCCCATTATTATTAATCATGCTTTCTGAATTGCAGGATAAGTTTACTCTTTACTTGTGCTGAATAATTCTCCTTGTTCTTAGGTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAGGTATTGATATATTTCATGTGGGTTATTTTCTTACTTAGCTCATAAGATTAGAGTTTCAGTTCTTTAATTCCTCGGTTTTCTTTTTTTTTTTTTTGGGGGGGGGGGGGGGTTATATTGGATATGGGAAGAGATTATGACATTGGAATAAACTAATTTAGCTACTGAATACTTGTTTTTAAGTTTCAACTCGAAATAAGATATGCAGAACGCATTCTTAGGTAAATGTTTGCTTGGAAACTAAGGGAAGGAAAAGAAAAGGAAAGTAGAAAGAAGGAAAAGAGGCTGCTAGCAGAAGCAATGTGAGAAGGGACTGTTTAGACAACAAAATTTGAAAAAAGGGAGGAGCTTTTAGACAAATCTGATCTATGACAATGGGATAAGATGGCAGTATGCTTTTCGAAGTTGGAGTTCAGTATTGTATGAAGGAACTATATCAGAGAGTTTTAAGACTTCCGAGGAAAGAGCAAGAGAGTGATGAACAACCCTAGTCTTAGAAAAAGGCCAAAGGGTCAGAAAGGGAAATTATCTCTCCAATTCTTTGCTGTAGGCAGACATGAGAAGGGAAAGTCTTGTAGTTCTCTCTTCCCTTCTCCAGTTGACAAAAGCATGGTTATGAAAATATTATGCATGAATGGACTTGTCATATAATTCGTTGGGTAAGTTCTCATATACATATAACTTATAAGGTTATCTTTCTATGCAACTTTTGGGATTTGAATATGTAAGTCTCTTTGGAAGTCTCTTCAAGTATCCTACTGAAAGAGGTATCTGGTAATACTTCAAAAGTCTGGATTAAAGGGATCAAAGTTCAAGTATAGTTTTTTTAGCACTACCTAGTTTAGTATGGTTATGGACATAGACACATAGTGATACCAAACTTTTTTTTCCGTTCACAAAGACGCAAAGTTCTTCATTAACTTGTTATCTAGTAAAAGATGAACTATCATCTCTGGAGTGACACGTGTAGTATTTACATCTTACTCTAAAAGATTTGGTCAAATAGAGATGCCACCTTATTTCAGTTTTCTGCTTAAAACATATCTTCAACAGTTCATTGGGTTATAATGGTGGTATACATAAGAGAACTTTATATGTTGTCTCTGGAGTGCACACAATCACAGTATCTGTCACTACATAAAAAGATAAAAGAAGAGAAAGAGGAAATATGGCCTTTCAACTTATGTTTAAATGATGACCGTCACTCCTTGTATTGTGATATTTTGATTTGCTGTCAATTTTTTGTGGGGTGATGGGTGGTAAATCTTATTGTTAACGACTTTGGACTTTTGATGCAGTGCACTAGAACCTTCTTCTCTTAGTCGTGCTGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACTGTAAGTAACAAATATCTTCTCACTGTTACATTAGGTATCACTGGAACCTTAATGGTGCATTTTTGAGATGTGAACTTTGATGTTGATAACCAGGTTTACTG</genome_strand>
        <mrna_strand>AGCAGAGTCATTCT......................................................................................TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTAGAACCTTCTTCTCTTAGTCGTGCTGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCGATATTTTTCCTTGATGCATTCACAAATCTCATTTGTGTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTT-CGCCACCTCAGGACT.............................................................................................GTTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549330" ref_strand="+" ref_description="SGN-E549330 [TUS-69-G20](-)">
      <seq>tttacacgaagaaggcgtgcatcctgactaccgaatatatcttcagtgtctttttagtgcactagaaccttctcttcttagtcgtgcggtatatccattgttaacctcatatgcctcaccggataagcaagcatatcctcgacattccctcagccgagctgcactgattacaagtggcagttcaatatttttccttgatgcattcacaaatctcattgtgttctatgcttcgacagcagaaccttcacttccgtttccgccacctcaggactgtttactgagaacaacaataaacaagcttaagcaagagaggtgtattacaccgagactttcatttatcaagggagggcaggatgatgcaacgacgtttgagaattatctaatagaggaacaagatgttgaaggaagtggctttacaagtgtcatgggtttcgtttcattcctcgatgagattaaccaaagcacattggagtacttgaaataagttgcatccatctttcaacaccacaggttatgacaggaagtagctacctccaaactcactgtacaattcgacaaaaaacagttatatcatcgacaaccaatgaacaagtccaaacttttgcaacgaagggttacatgtagcatcacagtaagtgtttctgacttgctcagagcagttgtaccggtgtcaccacccaagaccgtatcgttatatgtttccctgttcagctttagacagtagatttactcattcaaaatttgtaccagaagctgactcactccggttgataccttaaatatagaataaatagctgtgttttaaccagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="126305" stop="129110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126605" g_stop="126661" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126662" i_stop="127956" i_length="1295">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.610" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127957" g_stop="128171" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="272" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128172" i_stop="128264" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128265" g_stop="128744" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="752" r_length="480" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="821"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E549330" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126605" e_stop="126661"/>
          <exon e_start="127957" e_stop="128171"/>
          <exon e_start="128265" e_stop="128744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAGGTATTGATATATTTCATGTGGGTTATTTTCTTACTTAGCTCATAAGATTAGAGTTTCAGTTCTTTAATTCCTCGGTTTTCTTTTTTTTTTTTTTGGGGGGGGGGGGGGGTTATATTGGATATGGGAAGAGATTATGACATTGGAATAAACTAATTTAGCTACTGAATACTTGTTTTTAAGTTTCAACTCGAAATAAGATATGCAGAACGCATTCTTAGGTAAATGTTTGCTTGGAAACTAAGGGAAGGAAAAGAAAAGGAAAGTAGAAAGAAGGAAAAGAGGCTGCTAGCAGAAGCAATGTGAGAAGGGACTGTTTAGACAACAAAATTTGAAAAAAGGGAGGAGCTTTTAGACAAATCTGATCTATGACAATGGGATAAGATGGCAGTATGCTTTTCGAAGTTGGAGTTCAGTATTGTATGAAGGAACTATATCAGAGAGTTTTAAGACTTCCGAGGAAAGAGCAAGAGAGTGATGAACAACCCTAGTCTTAGAAAAAGGCCAAAGGGTCAGAAAGGGAAATTATCTCTCCAATTCTTTGCTGTAGGCAGACATGAGAAGGGAAAGTCTTGTAGTTCTCTCTTCCCTTCTCCAGTTGACAAAAGCATGGTTATGAAAATATTATGCATGAATGGACTTGTCATATAATTCGTTGGGTAAGTTCTCATATACATATAACTTATAAGGTTATCTTTCTATGCAACTTTTGGGATTTGAATATGTAAGTCTCTTTGGAAGTCTCTTCAAGTATCCTACTGAAAGAGGTATCTGGTAATACTTCAAAAGTCTGGATTAAAGGGATCAAAGTTCAAGTATAGTTTTTTTAGCACTACCTAGTTTAGTATGGTTATGGACATAGACACATAGTGATACCAAACTTTTTTTTCCGTTCACAAAGACGCAAAGTTCTTCATTAACTTGTTATCTAGTAAAAGATGAACTATCATCTCTGGAGTGACACGTGTAGTATTTACATCTTACTCTAAAAGATTTGGTCAAATAGAGATGCCACCTTATTTCAGTTTTCTGCTTAAAACATATCTTCAACAGTTCATTGGGTTATAATGGTGGTATACATAAGAGAACTTTATATGTTGTCTCTGGAGTGCACACAATCACAGTATCTGTCACTACATAAAAAGATAAAAGAAGAGAAAGAGGAAATATGGCCTTTCAACTTATGTTTAAATGATGACCGTCACTCCTTGTATTGTGATATTTTGATTTGCTGTCAATTTTTTGTGGGGTGATGGGTGGTAAATCTTATTGTTAACGACTTTGGACTTTTGATGCAGTGCACTAGAACCTTCTTCTCTTAGTCGTGCTGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACTGTAAGTAACAAATATCTTCTCACTGTTACATTAGGTATCACTGGAACCTTAATGGTGCATTTTTGAGATGTGAACTTTGATGTTGATAACCAGGTTTACTGAGAACAACAATAAACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAA</genome_strand>
        <mrna_strand>TTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACTAGAACCTTCTCTTCTTAGTCGTGCGGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCAATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACT.............................................................................................GTTTACTGAGAACAACAATAAACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGACGTTTGAGAATTATCTAATAGAGGAACAAGATGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACAGGAAGTAGCTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACGAAGGGTTACATGTAGCATCACAGTAAGTGTTTCTGACTTGCTCAGAGCAGTTGTACCGGTGTCACCACCCAAGACCGTATCGTTATATGTTTCCCTGTTCAGCTTTAGACAGTAGATTTACTCATTCAAAATTTGTACCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211427" ref_strand="+" ref_description="SGN-E211427 [cLEC-67-I2]">
      <seq>acaagcttaagcaagagaggtgtattacaccgagactttcatttatcaagggagggcaggatgatgcaacggcgtttgagaactatctaatagaggaacaagacgttgaaggaagtggctttacaagtgtcatgggtttcgtttcattcctcgatgagattaaccaaagcacattggagtacttgaaataagttgcatccatctttcaacaccacaggttatgacgggaagtaggtacctccaaactcactgtacaattcgacaaaaaacagttatatcatcgacaaccaatgaacaagtccaaacttttgcaacaaagggttacatgtagcatcacagcaagtatttctgacttactcagagcagttgaaccggtgtcacctcccaagagcgtatcgttttatgtttcccagttcagctttagacagtagatttgctcattcaaaatttgtaccagaagctggatcaaactcttatctttttcttgggttgataccttaaatatagaataaatagctgtgtttttgaaccagaattttgttgtttgtcaggttttctgttgttttcttaattcacacatttggttctgttggtgcattggcatatggaaattgaatgtaattcttgtgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="127986" stop="129220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128286" g_stop="128920" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E211427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128286" e_stop="128920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGTGTTTTTG</genome_strand>
        <mrna_strand>ACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGTGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375121" ref_strand="+" ref_description="SGN-E375121 [TUS-36-O1](-)">
      <seq>caagcttaagcaagagaggtgtattacaccgagactttcatttatcaagggagggcaggatgatgcaacggcgtttgagaactatctaatagaggaacaagacgttgaaggaagtggctttacaagtgtcatgggtttcgtttcattcctcgatgagattaaccaaagcacattggagtacttgaaataagttgcatccatctttcaacaccacaggttatgacgggaagtaggtacctccaaactcactgtacaattcgacaaaaaacagttatatcatcgacaaccaatgaacaagtccaaacttttgcaacaaagggttacatgtagcatcacagcaagtatttttgacttactcagagcagttgaaccggtgtcacctcccaagagcgtatcgttttatgtttcccagttcagctttagacagtagatttgctcattcaaaatttgtaccagaagctggatcaaactcttatctttttcttgggttgataccttaaatatagaataaatagctgtgtttttgaaccagaattttgttgtttgtcaggttttctgttgttttcttaattcacacatttggttctgttggtgcattggcatatggaaattgaatgtaattcttgtgtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="127987" stop="129217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128287" g_stop="128913" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="654"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E375121" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128287" e_stop="128913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGT</genome_strand>
        <mrna_strand>CAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTTTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288766" ref_strand="-" ref_description="SGN-E288766 [cLES-17-I5]">
      <seq>cccaagagcgtatcgttttatgtttcccagttcagctttagacagtagatttgctcattcaaaatttgtaccagaagctggatcaaactcttatctttttcttgggttgataccttaaatatagaataaatagctgtgtttttgaaccagaattttgttgtttgtcaggttttctgttgttttcttaattcacacatttggttctgttggtgcattggcatatggaaattgaatgtaattcttgtgtttttgttcttgtgaagtacaaagttttgttttcacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="128369" stop="129260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128669" g_stop="128948" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="281" polyA_stop="298"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E288766" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288766" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128669" e_stop="128948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGTGTTTTTGTTCTTGTGAAGTACAAAGTTTTGTTTTC</genome_strand>
        <mrna_strand>CCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGTGTTTTTGTTCTTGTGAAGTACAAAGTTTTGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372437" ref_strand="+" ref_description="SGN-E372437 [TUS-32-K14](-)">
      <seq>gatttgctaattctccggtcaatttttccggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatttcattttaacttgtctttttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="129424" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129723" g_stop="129763" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131373" g_stop="131800" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="469" r_length="428" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="488"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E372437" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129723" e_stop="129763"/>
          <exon e_start="131373" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTTGTAAGTTCACTTGTCTTTAGATTACAATGATTAACCCTAAACCCTAAAACATTTTTGTTATGATTAGTTATGTGATTCAGTATTTTTGTGTCTCCATCGAAATTTATTTTTTTCTCTGAGTTCAAATTTGTTATTTCAGTGGTATTTTTGTGGATGAATCTATATTGCAATCATGATAGTAGGCAGTTGATTAAAGCTATGTTTGTGTTTAGGGAAGTGAGTCGTGAAATGCCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGTCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGCCTACTCCTCATTTGCTTTCTTTGTGATTTTGTTGTATGAACTAGTATGAAAAATGTGATGAAATGTGGAATTTTACTGAAGTACGAAGAATTTGGTTTAATACTTTGATAATTTGGTCGTCATTTGCATGAAAAAACTGAATTAGTTCGGTTGGGTGTTCGGTGCACACTTTTACAAATCCGAAGAACTGAACTGCCACCCCTTTGTGAGCATTTTTATGTAATCTAACAAAACACTATTGTGGTAGGATAGGGTGGGGATTGGGGATTCAGGGGGTGGTGTAGGGTGGGATGGTCAAGAGGTGGAAGGTTGGGTGGGTGGGGAGTAGACTACAATGAACTTGGAATGTTATATTGAACATGTTTTCCCTAGTTTAATTGGGGGAAGTCAGTTTCCTCGTATTTAAGGAACTTGTTTTCCTAGAGAAAATGTTTTCTTAGGCATTTTGATGATCAAACACCCCTAAGTTGTGATAGTTTTCTAATCTGGCTTTTAGATTGCTAATAAAGGATATCAAATTCTAATTGGATAAGAATCAATATTTTTGTGTATTATAGTAGAGTTTCCATATCGGTGATAATGGTTCCATGTTTATTTTCATTATTGAACTTCTTCTTCTTTTTTTTTTTTATACTTTTTCCTTTCTTACAAGGAATAAGGTATTCTTCAAGAGGTAGTTGTGCTCTCCTGCTATTCAGGGAAAATTTGGTGTTTGCTTTAGCCTCTGCCTTTGTACTCTGTTGTTACTAAATTAAGGCTCTATTTTTGGATTTAGAGGGAGAAACTGAAAGTAGTATTGGATGGGAAAATAATCTTGGCTTTGCAAAATTCAGTCTTAGTAGTTTTTATGTTACAGCCCAAATATGGGATTTTATCCATTCACCTTTATAGTGTCTTTTTTGCCAGAGTTAACAGAATATCATTTTGTTATTTTTTTTCTTAGAAATTCATCTTTTCCCAATCTCTGATTCTTCATTTAAAGGCTTTAGCAGGCTCTAGCATATAGCCTAGACTGCCATCCCCCGAAAAGCAGAAGAATAACTCTTGTAGAGCTGTGATGTTGTTTGTTTGAGGCAGGGGTGGGGGATGTATCTAATTTAGCCAGTGTGAGGAAATCTCTTGTACTTCACATTGTTCTGATGAAAGCTAAATTGAGTTCTCATATAAAAGGATCTAGTTGACCCAAAAAAAGGCTATTTGTTATACCACTTGGATTAGTTTGTAAGGAAGACTATGTTGCTACTGAATTGTAAGTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATTTCATTTTAACTTGTCTTTTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294128" ref_strand="+" ref_description="SGN-E294128 [cLET-13-H11]">
      <seq>atttgctaattctccggtcaatttttccggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="129424" stop="132103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129724" g_stop="129763" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131373" g_stop="131800" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="468" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="488"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E294128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129724" e_stop="129763"/>
          <exon e_start="131373" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTTGTAAGTTCACTTGTCTTTAGATTACAATGATTAACCCTAAACCCTAAAACATTTTTGTTATGATTAGTTATGTGATTCAGTATTTTTGTGTCTCCATCGAAATTTATTTTTTTCTCTGAGTTCAAATTTGTTATTTCAGTGGTATTTTTGTGGATGAATCTATATTGCAATCATGATAGTAGGCAGTTGATTAAAGCTATGTTTGTGTTTAGGGAAGTGAGTCGTGAAATGCCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGTCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGCCTACTCCTCATTTGCTTTCTTTGTGATTTTGTTGTATGAACTAGTATGAAAAATGTGATGAAATGTGGAATTTTACTGAAGTACGAAGAATTTGGTTTAATACTTTGATAATTTGGTCGTCATTTGCATGAAAAAACTGAATTAGTTCGGTTGGGTGTTCGGTGCACACTTTTACAAATCCGAAGAACTGAACTGCCACCCCTTTGTGAGCATTTTTATGTAATCTAACAAAACACTATTGTGGTAGGATAGGGTGGGGATTGGGGATTCAGGGGGTGGTGTAGGGTGGGATGGTCAAGAGGTGGAAGGTTGGGTGGGTGGGGAGTAGACTACAATGAACTTGGAATGTTATATTGAACATGTTTTCCCTAGTTTAATTGGGGGAAGTCAGTTTCCTCGTATTTAAGGAACTTGTTTTCCTAGAGAAAATGTTTTCTTAGGCATTTTGATGATCAAACACCCCTAAGTTGTGATAGTTTTCTAATCTGGCTTTTAGATTGCTAATAAAGGATATCAAATTCTAATTGGATAAGAATCAATATTTTTGTGTATTATAGTAGAGTTTCCATATCGGTGATAATGGTTCCATGTTTATTTTCATTATTGAACTTCTTCTTCTTTTTTTTTTTTATACTTTTTCCTTTCTTACAAGGAATAAGGTATTCTTCAAGAGGTAGTTGTGCTCTCCTGCTATTCAGGGAAAATTTGGTGTTTGCTTTAGCCTCTGCCTTTGTACTCTGTTGTTACTAAATTAAGGCTCTATTTTTGGATTTAGAGGGAGAAACTGAAAGTAGTATTGGATGGGAAAATAATCTTGGCTTTGCAAAATTCAGTCTTAGTAGTTTTTATGTTACAGCCCAAATATGGGATTTTATCCATTCACCTTTATAGTGTCTTTTTTGCCAGAGTTAACAGAATATCATTTTGTTATTTTTTTTCTTAGAAATTCATCTTTTCCCAATCTCTGATTCTTCATTTAAAGGCTTTAGCAGGCTCTAGCATATAGCCTAGACTGCCATCCCCCGAAAAGCAGAAGAATAACTCTTGTAGAGCTGTGATGTTGTTTGTTTGAGGCAGGGGTGGGGGATGTATCTAATTTAGCCAGTGTGAGGAAATCTCTTGTACTTCACATTGTTCTGATGAAAGCTAAATTGAGTTCTCATATAAAAGGATCTAGTTGACCCAAAAAAAGGCTATTTGTTATACCACTTGGATTAGTTTGTAAGGAAGACTATGTTGCTACTGAATTGTAAGTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372438" ref_strand="+" ref_description="SGN-E372438 [TUS-32-K14]">
      <seq>atttgctaattctccggtcaatttttccggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="129424" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129724" g_stop="129763" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131373" g_stop="131800" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="468" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="488"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E372438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129724" e_stop="129763"/>
          <exon e_start="131373" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTTGTAAGTTCACTTGTCTTTAGATTACAATGATTAACCCTAAACCCTAAAACATTTTTGTTATGATTAGTTATGTGATTCAGTATTTTTGTGTCTCCATCGAAATTTATTTTTTTCTCTGAGTTCAAATTTGTTATTTCAGTGGTATTTTTGTGGATGAATCTATATTGCAATCATGATAGTAGGCAGTTGATTAAAGCTATGTTTGTGTTTAGGGAAGTGAGTCGTGAAATGCCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGTCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGCCTACTCCTCATTTGCTTTCTTTGTGATTTTGTTGTATGAACTAGTATGAAAAATGTGATGAAATGTGGAATTTTACTGAAGTACGAAGAATTTGGTTTAATACTTTGATAATTTGGTCGTCATTTGCATGAAAAAACTGAATTAGTTCGGTTGGGTGTTCGGTGCACACTTTTACAAATCCGAAGAACTGAACTGCCACCCCTTTGTGAGCATTTTTATGTAATCTAACAAAACACTATTGTGGTAGGATAGGGTGGGGATTGGGGATTCAGGGGGTGGTGTAGGGTGGGATGGTCAAGAGGTGGAAGGTTGGGTGGGTGGGGAGTAGACTACAATGAACTTGGAATGTTATATTGAACATGTTTTCCCTAGTTTAATTGGGGGAAGTCAGTTTCCTCGTATTTAAGGAACTTGTTTTCCTAGAGAAAATGTTTTCTTAGGCATTTTGATGATCAAACACCCCTAAGTTGTGATAGTTTTCTAATCTGGCTTTTAGATTGCTAATAAAGGATATCAAATTCTAATTGGATAAGAATCAATATTTTTGTGTATTATAGTAGAGTTTCCATATCGGTGATAATGGTTCCATGTTTATTTTCATTATTGAACTTCTTCTTCTTTTTTTTTTTTATACTTTTTCCTTTCTTACAAGGAATAAGGTATTCTTCAAGAGGTAGTTGTGCTCTCCTGCTATTCAGGGAAAATTTGGTGTTTGCTTTAGCCTCTGCCTTTGTACTCTGTTGTTACTAAATTAAGGCTCTATTTTTGGATTTAGAGGGAGAAACTGAAAGTAGTATTGGATGGGAAAATAATCTTGGCTTTGCAAAATTCAGTCTTAGTAGTTTTTATGTTACAGCCCAAATATGGGATTTTATCCATTCACCTTTATAGTGTCTTTTTTGCCAGAGTTAACAGAATATCATTTTGTTATTTTTTTTCTTAGAAATTCATCTTTTCCCAATCTCTGATTCTTCATTTAAAGGCTTTAGCAGGCTCTAGCATATAGCCTAGACTGCCATCCCCCGAAAAGCAGAAGAATAACTCTTGTAGAGCTGTGATGTTGTTTGTTTGAGGCAGGGGTGGGGGATGTATCTAATTTAGCCAGTGTGAGGAAATCTCTTGTACTTCACATTGTTCTGATGAAAGCTAAATTGAGTTCTCATATAAAAGGATCTAGTTGACCCAAAAAAAGGCTATTTGTTATACCACTTGGATTAGTTTGTAAGGAAGACTATGTTGCTACTGAATTGTAAGTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378291" ref_strand="+" ref_description="SGN-E378291 [TUS-32-K14]">
      <seq>atttgctaattctccggtcaatttttccggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="129424" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129724" g_stop="129763" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131373" g_stop="131800" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="468" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="488"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E378291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129724" e_stop="129763"/>
          <exon e_start="131373" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTTGTAAGTTCACTTGTCTTTAGATTACAATGATTAACCCTAAACCCTAAAACATTTTTGTTATGATTAGTTATGTGATTCAGTATTTTTGTGTCTCCATCGAAATTTATTTTTTTCTCTGAGTTCAAATTTGTTATTTCAGTGGTATTTTTGTGGATGAATCTATATTGCAATCATGATAGTAGGCAGTTGATTAAAGCTATGTTTGTGTTTAGGGAAGTGAGTCGTGAAATGCCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGTCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGCCTACTCCTCATTTGCTTTCTTTGTGATTTTGTTGTATGAACTAGTATGAAAAATGTGATGAAATGTGGAATTTTACTGAAGTACGAAGAATTTGGTTTAATACTTTGATAATTTGGTCGTCATTTGCATGAAAAAACTGAATTAGTTCGGTTGGGTGTTCGGTGCACACTTTTACAAATCCGAAGAACTGAACTGCCACCCCTTTGTGAGCATTTTTATGTAATCTAACAAAACACTATTGTGGTAGGATAGGGTGGGGATTGGGGATTCAGGGGGTGGTGTAGGGTGGGATGGTCAAGAGGTGGAAGGTTGGGTGGGTGGGGAGTAGACTACAATGAACTTGGAATGTTATATTGAACATGTTTTCCCTAGTTTAATTGGGGGAAGTCAGTTTCCTCGTATTTAAGGAACTTGTTTTCCTAGAGAAAATGTTTTCTTAGGCATTTTGATGATCAAACACCCCTAAGTTGTGATAGTTTTCTAATCTGGCTTTTAGATTGCTAATAAAGGATATCAAATTCTAATTGGATAAGAATCAATATTTTTGTGTATTATAGTAGAGTTTCCATATCGGTGATAATGGTTCCATGTTTATTTTCATTATTGAACTTCTTCTTCTTTTTTTTTTTTATACTTTTTCCTTTCTTACAAGGAATAAGGTATTCTTCAAGAGGTAGTTGTGCTCTCCTGCTATTCAGGGAAAATTTGGTGTTTGCTTTAGCCTCTGCCTTTGTACTCTGTTGTTACTAAATTAAGGCTCTATTTTTGGATTTAGAGGGAGAAACTGAAAGTAGTATTGGATGGGAAAATAATCTTGGCTTTGCAAAATTCAGTCTTAGTAGTTTTTATGTTACAGCCCAAATATGGGATTTTATCCATTCACCTTTATAGTGTCTTTTTTGCCAGAGTTAACAGAATATCATTTTGTTATTTTTTTTCTTAGAAATTCATCTTTTCCCAATCTCTGATTCTTCATTTAAAGGCTTTAGCAGGCTCTAGCATATAGCCTAGACTGCCATCCCCCGAAAAGCAGAAGAATAACTCTTGTAGAGCTGTGATGTTGTTTGTTTGAGGCAGGGGTGGGGGATGTATCTAATTTAGCCAGTGTGAGGAAATCTCTTGTACTTCACATTGTTCTGATGAAAGCTAAATTGAGTTCTCATATAAAAGGATCTAGTTGACCCAAAAAAAGGCTATTTGTTATACCACTTGGATTAGTTTGTAAGGAAGACTATGTTGCTACTGAATTGTAAGTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714225" ref_strand="+" ref_description="SGN-E714225 [FB10DD11]">
      <seq>actttctaattctccggtcaatttttccggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="129425" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129724" g_stop="129763" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609">
            <donor d_prob="0.928" d_score="0.95"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131373" g_stop="131800" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="468" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="502"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E714225" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129724" e_stop="129763"/>
          <exon e_start="131373" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTTGTAAGTTCACTTGTCTTTAGATTACAATGATTAACCCTAAACCCTAAAACATTTTTGTTATGATTAGTTATGTGATTCAGTATTTTTGTGTCTCCATCGAAATTTATTTTTTTCTCTGAGTTCAAATTTGTTATTTCAGTGGTATTTTTGTGGATGAATCTATATTGCAATCATGATAGTAGGCAGTTGATTAAAGCTATGTTTGTGTTTAGGGAAGTGAGTCGTGAAATGCCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGTCTAATACCTGTTTGGTAAATTGCCTCAATAAACTGTTTGATTTTGGTTTGAAATGCCTACTCCTCATTTGCTTTCTTTGTGATTTTGTTGTATGAACTAGTATGAAAAATGTGATGAAATGTGGAATTTTACTGAAGTACGAAGAATTTGGTTTAATACTTTGATAATTTGGTCGTCATTTGCATGAAAAAACTGAATTAGTTCGGTTGGGTGTTCGGTGCACACTTTTACAAATCCGAAGAACTGAACTGCCACCCCTTTGTGAGCATTTTTATGTAATCTAACAAAACACTATTGTGGTAGGATAGGGTGGGGATTGGGGATTCAGGGGGTGGTGTAGGGTGGGATGGTCAAGAGGTGGAAGGTTGGGTGGGTGGGGAGTAGACTACAATGAACTTGGAATGTTATATTGAACATGTTTTCCCTAGTTTAATTGGGGGAAGTCAGTTTCCTCGTATTTAAGGAACTTGTTTTCCTAGAGAAAATGTTTTCTTAGGCATTTTGATGATCAAACACCCCTAAGTTGTGATAGTTTTCTAATCTGGCTTTTAGATTGCTAATAAAGGATATCAAATTCTAATTGGATAAGAATCAATATTTTTGTGTATTATAGTAGAGTTTCCATATCGGTGATAATGGTTCCATGTTTATTTTCATTATTGAACTTCTTCTTCTTTTTTTTTTTTATACTTTTTCCTTTCTTACAAGGAATAAGGTATTCTTCAAGAGGTAGTTGTGCTCTCCTGCTATTCAGGGAAAATTTGGTGTTTGCTTTAGCCTCTGCCTTTGTACTCTGTTGTTACTAAATTAAGGCTCTATTTTTGGATTTAGAGGGAGAAACTGAAAGTAGTATTGGATGGGAAAATAATCTTGGCTTTGCAAAATTCAGTCTTAGTAGTTTTTATGTTACAGCCCAAATATGGGATTTTATCCATTCACCTTTATAGTGTCTTTTTTGCCAGAGTTAACAGAATATCATTTTGTTATTTTTTTTCTTAGAAATTCATCTTTTCCCAATCTCTGATTCTTCATTTAAAGGCTTTAGCAGGCTCTAGCATATAGCCTAGACTGCCATCCCCCGAAAAGCAGAAGAATAACTCTTGTAGAGCTGTGATGTTGTTTGTTTGAGGCAGGGGTGGGGGATGTATCTAATTTAGCCAGTGTGAGGAAATCTCTTGTACTTCACATTGTTCTGATGAAAGCTAAATTGAGTTCTCATATAAAAGGATCTAGTTGACCCAAAAAAAGGCTATTTGTTATACCACTTGGATTAGTTTGTAAGGAAGACTATGTTGCTACTGAATTGTAAGTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>ACTTTCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350502" ref_strand="+" ref_description="SGN-E350502 [cTOS-5-K7]">
      <seq>ggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcaccccctttgaatgttctgttaaacatttagcaaacaacacattcttcctactgtgtacaccaattcagtgatattttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131361" g_stop="131800" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="458"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E350502" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131361" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCA-CCCCTTTGAATGTTCTGTTAAACA-TTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATA-TTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GGTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCCTTTGAATGTTCTGTTAAACATTTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351781" ref_strand="+" ref_description="SGN-E351781 [cTOS-8-L22]">
      <seq>ggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131361" g_stop="131800" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="456"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E351781" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131361" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GGTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354778" ref_strand="+" ref_description="SGN-E354778 [cTOS-19-M3]">
      <seq>ggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131361" g_stop="131800" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="456"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E354778" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131361" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GGTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355408" ref_strand="+" ref_description="SGN-E355408 [cTOS-25-C6]">
      <seq>ggtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131361" g_stop="131800" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="456"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E355408" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131361" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GGTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232212" ref_strand="+" ref_description="SGN-E232212 [cLEL-5-B18](-)">
      <seq>gtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgcacaccaattcagtgatatttttgcagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131362" g_stop="131779" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="435"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E232212" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131362" e_stop="131779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCA</genome_strand>
        <mrna_strand>GTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGCACACCAATTCAGTGATATTTTTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232568" ref_strand="+" ref_description="SGN-E232568 [cLEL-5-B18](-)">
      <seq>gtgatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgcacaccaattcagtgatatttttgcagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131362" g_stop="131779" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="435"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E232568" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131362" e_stop="131779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCA</genome_strand>
        <mrna_strand>GTGATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGCACACCAATTCAGTGATATTTTTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304804" ref_strand="+" ref_description="SGN-E304804 [cLEX-10-O10]">
      <seq>gatcttgttgaaaaaaatgaagaaaggaattcaccctcaaatgcaatggatatcctacgtgacgcaaagtggacggttgatgcatgttatgatgactaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131073" stop="132103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131364" g_stop="131800" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="457"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E304804" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131364" e_stop="131800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</genome_strand>
        <mrna_strand>GATCTTGTTGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353127" ref_strand="+" ref_description="SGN-E353127 [cTOS-14-C7]">
      <seq>ttaaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatgttctgttaaacattagcaaacaacacattcttcctactgtgtacaccaattcagtgatatttttgcagcaatcattatggctcgttctcctgtcagcgtttaataagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131160" stop="132119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131459" g_stop="131815" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="369"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E353127" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131459" e_stop="131815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</genome_strand>
        <mrna_strand>TTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353239" ref_strand="+" ref_description="SGN-E353239 [cTOS-14-B6]">
      <seq>taaaatacaccaaacaggcaaggtttatcacatcagagcaaggcgtcagatggctcaaagtcttggtcagattgcaaagtttaagcgccgatatggtgagaaggaggaagagggggagaaaacagacaaatgattgcataagttggaaaaatagtgaatctctgatgattttgtggatggattcatcctcgcgttttcctttccatctcatcttaacttgtcttcttgtatgctgtcacccctttgaatggtctggtaaacattagcaaacaacacattcttcctactgtgtacacccattcagtgatatttttgcagcaatcattatggctcgttctcctgtcagcgtttaataagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="+" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="131160" stop="132119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131460" g_stop="131815" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="368"/>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="+" ref_id="SGN-E353239" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131460" e_stop="131815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</genome_strand>
        <mrna_strand>TAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGGTCTGGTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCCATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308125" ref_strand="+" ref_description="SGN-E308125 [cLEY-14-K21]">
      <seq>gaaaaatggcggagatagagaagcagaacaaggagaaggagaaagtagtagcagaaacaacagtgcaaatcgatcaagagggtcttcccaagactattgtacgtaggcttgtgaaggaaaagctttctcagctatctacagatactgatatctcacttcttcgtgactcgcttcttgctttctctgaaagtgctcgaattttcatccattacctctccgcaactgctaatgacatatgcaaggagtctaagaggcaaacgataaatgcagaagatgtgttcaaggcccttgaagagattgagtttccagagctcattgagcctctcaaagcttctcttgagggattcagagagaagaactctaaaaggaagtcaacgtcatctaagtccccagaatctaacaaaaaggccaagctgaaagagcctgtggaaaatgggaagggtaagatgaaagaacaaccctcggataacgaaaatgaagatgcacaagctgaagaggaagtcaatgaagttgaggatagagttgatgattaacgagattattgtttgcgcttgccttcttcgttagacattttactcgtgccttgttaacccccccagaaaaatgtaatcttatcttggatgcaaagttaacaaacagtttgtagagctttattctggagtaaaatgaaattctttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="135710" stop="132038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135410" g_stop="135188" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135187" i_stop="134128" i_length="1060">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134127" g_stop="134009" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="342" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134008" i_stop="132678" i_length="1331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132677" g_stop="132335" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="685" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E308125" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135410" e_stop="135188"/>
          <exon e_start="134127" e_stop="134009"/>
          <exon e_start="132677" e_stop="132335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAACGTAAGGTTTAATGGGTTTTGCAGATTAGTTTCAATTGTTTCTTATTTTTGATAAATTTCAGTTAATTCATGGAAAATGATAAAAAGGCTTGGAGATTATAGGTGTTGTTTCGATTTTTTTTGATCCGGAATTCAAATGGGGTTTTGTTAAATTTTTGTTCTTTTACTGATTATTTATGGATTCAGTCTTAAAAAATTGAAATTTAGGATTGTTTGTTTTGTTGCTAAAAGGTAATAGGGAAATTTCTTAATTTTTGTGATCTGGGATGTGTATTGGGTATTCTTTAATTGATGATGACGAAACCTGCTGCGGCTACCCTTTGGGTGTGCACAGTGTAAACCTCACTTTGCTCCGGTGCAATAGACGTGAGAGGTAAATTGCACTAGGGAAATCATATGTGATGAGGTTAAAGCAGAAGTTTAACCCCTTGTTGTATTAGGTATTACATTTTAGTTAATCAGCTCACATGCATCAATTTTTGAGCGATTAGGTCGGATTAACCCTAAGAGGTAGAATTGTCTTGTTTCTTAAAAGAAGATTTGGTGCTTTTGAATTCCTGTGAGTTTAAAGGATTTTGATTTAAAATGTCATCCTTTTGCTGATCTACGGTGAAGTTATTGAGTATTTTTAGGAACTGATATAAAGCTGAAAATTAGGATTGTGTTGATAGTGATATTGGCGTGTTGTTGAAAGAACTTTGGGAACTCTGTGAAACTGTGTAATCTAGGATTTAAGGGGTTCTGTGTATTAGCTATTTCTTTTACTGATTGATATCTAAGTTTTAGTTGATTAGTAGGATGAACACTAAAAGGTGGGGATTTGTGAAAAAGAAGTGATATATTGTGATTCTAAGCTAGTGCTGGAGTGTGAATGAGGTTATTTATTGGTTGATGTAAAACATGATAAGGCTGCTTTGTGTTGACAGTTGAGGAAATGAAGAACAGGTTGGATTAGATATCAGTGATGATACAGAAAGATGGAAAAATAATTATGTTTTCATGTTTCTCTTTTGTGATATTTCGCTTCAATGAGTGATCTCATTTGCAATGTGCAATTGCAGTGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGGGTCAGTTGCTTTTCATTGTTCTAAATTTTTTCGACAATCTGTATTTTTCTTGTCATGAAGCTGAACGCTTTCCATCTTAGGCTACATACTCTTATCCACTGAATGTTGCATACAATCACAGGTCAACATTTACTTTATACATATGTTGATCAAAGGAGAAATAAAAGTCGGTAATAAGCCAAATATACCCATGGTGTTGTGTTAGGGCATAGAGCTTCAAAGAATTGAATAGTTAGTGAGGATTATGGTCAGAGATCTTCCAAGCTGTATCAGAGTAGCATGTGTGTCAATCCACCAGGTCTAAAGCCAATGTTGTTTATTTAATATGGTAAAAGTTCTATTCATAAGGTACTAAGGTACCCAGAAGGCACACAAAAGTATGACAACAACATAGCCCCCTACATTCTACAATAGAATCAAGCTACATAATTTCCAAGTGAATCCAAGTAATCCAACCATATACTGCTCCATGTTCTCCCTCTTCACACCCAAAAAACAAACTATGCAGGCGCAGGTTCTTGACTCTACTAAATATGATTCTTTACTCTCAAAACAACATGCACTATTTCCTTCAGACCAGAAAGGTTGATTGCCTTCGTCTCCTGGCTATTATCGTCGAACAGATGGAAACTGTGTTACATATTTCTATTAGGTTTGTCCAGAAATACTCTATAAAGGTCAAAACAACAAGAAAGAGCTGAAATTAGAAAATAAATGCTCACATTTGAAGACTGAATTTTTGAGAGTTGCCTGGCACACTAGCTCTCTTTACATTATACAAGTTGAGCATATTAGTGCTTATTGAACACTCTGAGTCACTGATCTCTTTATCAGTGTTAAACACCAAGTCTAGCAAATTTACAACTTTAGTAGTGCATCTCTATATAGAGAGTCCTAAAAAACAAGGTCCTGACTTTGAGATGGAGGGAGAGGGAGTAATTATTTGAACAGATTAAGTTTTAACATTTGGGCTTATTAATCATTCTCTTCATATGAATTAGAAGAAAAAACTGGCTCATTAAAATTTGTAATCCTGACTTGTCTGGGATCGATCATTGTTGATTCTAATTGATCTCTTAATTCGAGTTTCCTGCTGTGATAAGTTTCAGGCTGGTTAAACATATATCATTTGTTTGTCATGTGTGTTACATCCTCGAATTGTTAAATTCAGAGAACTCTGTGCAATATCAGATGGATACATATATGATAACTAACAGATTCTTGCTTTAACTGCCTACCGTGATCTGATTGGAAATGAGGCAATATTTACTGTAGTGATGAAATGGACTTACACCTCTCTTTGCTTTACATATTCTTCTCTCTTTTTACAGGATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAATTG</genome_strand>
        <mrna_strand>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAATTCTTTGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353851" ref_strand="+" ref_description="SGN-E353851 [cTOS-10-F10]">
      <seq>agaaggagaaagtagtagcagaaacaacagtgcaaatcgatcaagagggtcttcccaagactattgtacgtaggcttgtgaaggaaaagctttctcagctatctacagatactgatatctcacttcttcgtgactcgcttcttgctttctctgaaagtgctcgaattttcatccattacctctccgcaactgctaatgacatatgcaaggagtctaagaggcaaacgataaatgcagaagatgtgttcaaggcccttgaagagattgagtttccagagctcattgagcctctcaaagcttctcttgagggattcagagagaagaactctaaaaggaagtcaacgtcatctaagtccccagaatctaacaaaaaggccaagctgaaagagcctgtggaaaatgggaagggtaagatgaaagaacaaccctcggataacgaaaatgaagatgcacaagctgaagaggaagtcaatgaagttgaggatagagttgatgattaacgagattattgtttgcgcttgccttcttcgttagacattttactcgtgccttgttaacccccccagaaaaatgtaatcttatcttggatgcaaagttaacaaacagtttgtagagctttattctggagtaaaatgaagttcttgggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="135677" stop="132038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135377" g_stop="135188" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135187" i_stop="134128" i_length="1060">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134127" g_stop="134009" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="309" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134008" i_stop="132678" i_length="1331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132677" g_stop="132335" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="651" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E353851" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135377" e_stop="135188"/>
          <exon e_start="134127" e_stop="134009"/>
          <exon e_start="132677" e_stop="132335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAACGTAAGGTTTAATGGGTTTTGCAGATTAGTTTCAATTGTTTCTTATTTTTGATAAATTTCAGTTAATTCATGGAAAATGATAAAAAGGCTTGGAGATTATAGGTGTTGTTTCGATTTTTTTTGATCCGGAATTCAAATGGGGTTTTGTTAAATTTTTGTTCTTTTACTGATTATTTATGGATTCAGTCTTAAAAAATTGAAATTTAGGATTGTTTGTTTTGTTGCTAAAAGGTAATAGGGAAATTTCTTAATTTTTGTGATCTGGGATGTGTATTGGGTATTCTTTAATTGATGATGACGAAACCTGCTGCGGCTACCCTTTGGGTGTGCACAGTGTAAACCTCACTTTGCTCCGGTGCAATAGACGTGAGAGGTAAATTGCACTAGGGAAATCATATGTGATGAGGTTAAAGCAGAAGTTTAACCCCTTGTTGTATTAGGTATTACATTTTAGTTAATCAGCTCACATGCATCAATTTTTGAGCGATTAGGTCGGATTAACCCTAAGAGGTAGAATTGTCTTGTTTCTTAAAAGAAGATTTGGTGCTTTTGAATTCCTGTGAGTTTAAAGGATTTTGATTTAAAATGTCATCCTTTTGCTGATCTACGGTGAAGTTATTGAGTATTTTTAGGAACTGATATAAAGCTGAAAATTAGGATTGTGTTGATAGTGATATTGGCGTGTTGTTGAAAGAACTTTGGGAACTCTGTGAAACTGTGTAATCTAGGATTTAAGGGGTTCTGTGTATTAGCTATTTCTTTTACTGATTGATATCTAAGTTTTAGTTGATTAGTAGGATGAACACTAAAAGGTGGGGATTTGTGAAAAAGAAGTGATATATTGTGATTCTAAGCTAGTGCTGGAGTGTGAATGAGGTTATTTATTGGTTGATGTAAAACATGATAAGGCTGCTTTGTGTTGACAGTTGAGGAAATGAAGAACAGGTTGGATTAGATATCAGTGATGATACAGAAAGATGGAAAAATAATTATGTTTTCATGTTTCTCTTTTGTGATATTTCGCTTCAATGAGTGATCTCATTTGCAATGTGCAATTGCAGTGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGGGTCAGTTGCTTTTCATTGTTCTAAATTTTTTCGACAATCTGTATTTTTCTTGTCATGAAGCTGAACGCTTTCCATCTTAGGCTACATACTCTTATCCACTGAATGTTGCATACAATCACAGGTCAACATTTACTTTATACATATGTTGATCAAAGGAGAAATAAAAGTCGGTAATAAGCCAAATATACCCATGGTGTTGTGTTAGGGCATAGAGCTTCAAAGAATTGAATAGTTAGTGAGGATTATGGTCAGAGATCTTCCAAGCTGTATCAGAGTAGCATGTGTGTCAATCCACCAGGTCTAAAGCCAATGTTGTTTATTTAATATGGTAAAAGTTCTATTCATAAGGTACTAAGGTACCCAGAAGGCACACAAAAGTATGACAACAACATAGCCCCCTACATTCTACAATAGAATCAAGCTACATAATTTCCAAGTGAATCCAAGTAATCCAACCATATACTGCTCCATGTTCTCCCTCTTCACACCCAAAAAACAAACTATGCAGGCGCAGGTTCTTGACTCTACTAAATATGATTCTTTACTCTCAAAACAACATGCACTATTTCCTTCAGACCAGAAAGGTTGATTGCCTTCGTCTCCTGGCTATTATCGTCGAACAGATGGAAACTGTGTTACATATTTCTATTAGGTTTGTCCAGAAATACTCTATAAAGGTCAAAACAACAAGAAAGAGCTGAAATTAGAAAATAAATGCTCACATTTGAAGACTGAATTTTTGAGAGTTGCCTGGCACACTAGCTCTCTTTACATTATACAAGTTGAGCATATTAGTGCTTATTGAACACTCTGAGTCACTGATCTCTTTATCAGTGTTAAACACCAAGTCTAGCAAATTTACAACTTTAGTAGTGCATCTCTATATAGAGAGTCCTAAAAAACAAGGTCCTGACTTTGAGATGGAGGGAGAGGGAGTAATTATTTGAACAGATTAAGTTTTAACATTTGGGCTTATTAATCATTCTCTTCATATGAATTAGAAGAAAAAACTGGCTCATTAAAATTTGTAATCCTGACTTGTCTGGGATCGATCATTGTTGATTCTAATTGATCTCTTAATTCGAGTTTCCTGCTGTGATAAGTTTCAGGCTGGTTAAACATATATCATTTGTTTGTCATGTGTGTTACATCCTCGAATTGTTAAATTCAGAGAACTCTGTGCAATATCAGATGGATACATATATGATAACTAACAGATTCTTGCTTTAACTGCCTACCGTGATCTGATTGGAAATGAGGCAATATTTACTGTAGTGATGAAATGGACTTACACCTCTCTTTGCTTTACATATTCTTCTCTCTTTTTACAGGATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAATTG</genome_strand>
        <mrna_strand>AGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTC-TTGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0303G16-ZiiPo/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0303G16.1" temp_strand="-" temp_description="C11HBa0303G16.1  AC217004.1 htgs_phase:3 submitted_to_sgn_as:gi|166159199|gb|AC217004.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence">
        <position start="138879" stop="137829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138579" g_stop="138134" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0303G16.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0303G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138579" e_stop="138134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAGAAGAAATC-AAAAATAATTTATGTATGAAAAATATTAAAATATACCTTGAACTTTGATAGAAGAATCATATAAACCACTAAATAATTTTTTT-TAAAAAAA-TAGAAGTAATAAGTATAAAATTAAAACTATTTTTTTAACTTCCGTTAAATGAAGAGTATATGTGAGCGATTTTGTAACAGCAGGGGTATATGTGAGCCGTTTGTATAATGGTAAGGGCATATATGAGCCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTATATTT</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAA-ATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>166</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3954" PGL_stop="10073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3954" e_stop="4151"/>
            <exon e_start="4701" e_stop="4867"/>
            <exon e_start="4956" e_stop="5060"/>
            <exon e_start="5162" e_stop="5218"/>
            <exon e_start="5916" e_stop="5996"/>
            <exon e_start="6461" e_stop="6495"/>
            <exon e_start="6767" e_stop="6856"/>
            <exon e_start="6953" e_stop="7109"/>
            <exon e_start="7258" e_stop="7444"/>
            <exon e_start="9963" e_stop="10073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.744" e_score="0.988"/>
          <exon-intron don_prob="0.996" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.587" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="3954" e_stop="4151" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.744">
            <gDNA_intron_boundary i_start="4152" i_stop="4700" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4701" e_stop="4867" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.944">
            <gDNA_intron_boundary i_start="4868" i_stop="4955" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4956" e_stop="5060" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.822">
            <gDNA_intron_boundary i_start="5061" i_stop="5161" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5162" e_stop="5218" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.987">
            <gDNA_intron_boundary i_start="5219" i_stop="5915" i_length="697"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5916" e_stop="5996" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.587" acc_prob="0.939">
            <gDNA_intron_boundary i_start="5997" i_stop="6460" i_length="464"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6461" e_stop="6495" e_length="35"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6496" i_stop="6766" i_length="271"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6767" e_stop="6856" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.935" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6857" i_stop="6952" i_length="96"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6953" e_stop="7109" e_length="157"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="7110" i_stop="7257" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7258" e_stop="7444" e_length="187"/>
          </exon>
          <intron i_serial="9" don_prob="0.986" acc_prob="0.888">
            <gDNA_intron_boundary i_start="7445" i_stop="9962" i_length="2518"/>
          </intron>
          <exon e_serial="10" e_score="0.964">
            <gDNA_exon_boundary e_start="9963" e_stop="10073" e_length="111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3954" stop="4151"/>
              <exon start="4701" stop="4845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3982" stop="4151"/>
              <exon start="4701" stop="4867"/>
              <exon start="4956" stop="5060"/>
              <exon start="5162" stop="5218"/>
              <exon start="5916" stop="5996"/>
              <exon start="6461" stop="6478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4754" stop="4867"/>
              <exon start="4956" stop="5060"/>
              <exon start="5162" stop="5218"/>
              <exon start="5916" stop="5996"/>
              <exon start="6461" stop="6495"/>
              <exon start="6767" stop="6856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5917" stop="5996"/>
              <exon start="6461" stop="6495"/>
              <exon start="6767" stop="6856"/>
              <exon start="6953" stop="7109"/>
              <exon start="7258" stop="7444"/>
              <exon start="9963" stop="10073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAACTCTCTCTATATATACTGTATAAATTCTGTATCATACATACGAACTGAAATGGTGCTGCCATTGTGTATTCCCAATCACTCTCACTTCATCTCTCCTTTAAGCTCAGTCGAATTCTCTCCTCCGCCACCGCAGCGGCGCCGTGCACGGCCCAGATTCACGACTGTACTATCCGTACTCAAAACCTCTCGACCCG : TGAGTGAAGTCACAGTGGATGACGCTCTACGAGATTTCTTGAGGGATAGAGAGTTAAAGGGGGATGTTATCTCGAGAATTTCTGATAGAATCTGGCTGAGGAACGTGGCTGGTTTTGATTCGGCAGAAGCTGGGAGTGGGACAAGTGAGGCTACTCAATCGGAGGAG : GTATCAGGGGAAGATAATGAAGGTGGGTTTTTGAAGTTGAAAAGTACCAAAGAGTGGCTTTCAGGTGACGCCACGGCGCCAGTTAATAAAAAGAGGACATTTAAG : GAAATACAAGATGACAGGGAAAGAACGAAAAGGCTAAACTTTCTCCAATATGAAGCT : CTTAAGAGGGAGCTACTTTTCTTAACGGTGGGCATTGGGACTGCTTGCACTGGATACTGTTTGGTAGTTTTATCAGTCCAG : GCTGCTCTGAGCTATGCGACAGGAGTTGTTTTCAG : TTGCCTGTACTATCAGCTCCTCTGCCAACATGCAGACAACCTCTCACAAGAGACAGTTCCTGATATTTTCACGAAAAAGAAACTTAAGAA : AATCGGAATACGAAGTGAAGATCTGCAGGATTTCTTTGAGAAATCTGTTAAAGGCAGCAGCATTGCTCTTTCATCTCCCAGGCTTGTGATTCCTGCTGCAATATATGGATTGTGGGAATTGTCTCAGCATTTCGCCCATGATCTATTTGATTTTCAG : CTGGTTCCTGCCATGGTTGGGTTGTTTGTATATAAAGCAGCTTGCCTGGTGCAAGTCTACAGAGATAATGAAGACCTTCAATTTCTTTTTCCTGGGAATGAAGAAGGGTCCGGTGACTGAATATCTGGAATATGTTACTTGTTGATGCGATGGTAAAGTTGGATGTCTACCTGACTACACCTTCTGG : CCTAACAGAGAGTAACCGACAAACAGCAAGCTGAATCTTTGCAGAGTAGGACAAGCTTTATGATGTCTTGCCTTTTAAGAAAGCAAGATCGAAGGGATGAATATTACACTG</gDNA_template>
            <first_frame> L  T  L  S  I  Y  T  V  *  I  L  Y  H  T  Y  E  L  K  W  C  C  H  C  V  F  P  I  T  L  T  S  S  L  L  *  A  Q  S  N  S  L  L  R  H  R  S  G  A  V  H  G  P  D  S  R  L  Y  Y  P  Y  S  K  P  L  D  P  :  *  V  K  S  Q  W  M  T  L  Y  E  I  S  *  G  I  E  S  *  R  G  M  L  S  R  E  F  L  I  E  S  G  *  G  T  W  L  V  L  I  R  Q  K  L  G  V  G  Q  V  R  L  L  N  R  R  R :   Y  Q  G  K  I  M  K  V  G  F  *  S  *  K  V  P  K  S  G  F  Q  V  T  P  R  R  Q  L  I  K  R  G  H  L  R :   K  Y  K  M  T  G  K  E  R  K  G  *  T  F  S  N  M  K  L :   L  R  G  S  Y  F  S  *  R  W  A  L  G  L  L  A  L  D  T  V  W  *  F  Y  Q  S  R :   L  L  *  A  M  R  Q  E  L  F  S   : V  A  C  T  I  S  S  S  A  N  M  Q  T  T  S  H  K  R  Q  F  L  I  F  S  R  K  R  N  L  R   : K  S  E  Y  E  V  K  I  C  R  I  S  L  R  N  L  L  K  A  A  A  L  L  F  H  L  P  G  L  *  F  L  L  Q  Y  M  D  C  G  N  C  L  S  I  S  P  M  I  Y  L  I  F  S :   W  F  L  P  W  L  G  C  L  Y  I  K  Q  L  A  W  C  K  S  T  E  I  M  K  T  F  N  F  F  F  L  G  M  K  K  G  P  V  T  E  Y  L  E  Y  V  T  C  *  C  D  G  K  V  G  C  L  P  D  Y  T  F  W  :  P  N  R  E  *  P  T  N  S  K  L  N  L  C  R  V  G  Q  A  L  *  C  L  A  F  *  E  S  K  I  E  G  M  N  I  T  L </first_frame>
            <second_frame>  *  L  S  L  Y  I  L  Y  K  F  C  I  I  H  T  N  *  N  G  A  A  I  V  Y  S  Q  S  L  S  L  H  L  S  F  K  L  S  R  I  L  S  S  A  T  A  A  A  P  C  T  A  Q  I  H  D  C  T  I  R  T  Q  N  L  S  T  R :   E  *  S  H  S  G  *  R  S  T  R  F  L  E  G  *  R  V  K  G  G  C  Y  L  E  N  F  *  *  N  L  A  E  E  R  G  W  F  *  F  G  R  S  W  E  W  D  K  *  G  Y  S  I  G  G   : G  I  R  G  R  *  *  R  W  V  F  E  V  E  K  Y  Q  R  V  A  F  R  *  R  H  G  A  S  *  *  K  E  D  I  *   : G  N  T  R  *  Q  G  K  N  E  K  A  K  L  S  P  I  *  S   : S  *  E  G  A  T  F  L  N  G  G  H  W  D  C  L  H  W  I  L  F  G  S  F  I  S  P   : G  C  S  E  L  C  D  R  S  C  F  Q  :  L  P  V  L  S  A  P  L  P  T  C  R  Q  P  L  T  R  D  S  S  *  Y  F  H  E  K  E  T  *  E  :  N  R  N  T  K  *  R  S  A  G  F  L  *  E  I  C  *  R  Q  Q  H  C  S  F  I  S  Q  A  C  D  S  C  C  N  I  W  I  V  G  I  V  S  A  F  R  P  *  S  I  *  F  S   : A  G  S  C  H  G  W  V  V  C  I  *  S  S  L  P  G  A  S  L  Q  R  *  *  R  P  S  I  S  F  S  W  E  *  R  R  V  R  *  L  N  I  W  N  M  L  L  V  D  A  M  V  K  L  D  V  Y  L  T  T  P  S  G :   L  T  E  S  N  R  Q  T  A  S  *  I  F  A  E  *  D  K  L  Y  D  V  L  P  F  K  K  A  R  S  K  G  *  I  L  H   </second_frame>
            <third_frame>   N  S  L  Y  I  Y  C  I  N  S  V  S  Y  I  R  T  E  M  V  L  P  L  C  I  P  N  H  S  H  F  I  S  P  L  S  S  V  E  F  S  P  P  P  P  Q  R  R  R  A  R  P  R  F  T  T  V  L  S  V  L  K  T  S  R  P   : V  S  E  V  T  V  D  D  A  L  R  D  F  L  R  D  R  E  L  K  G  D  V  I  S  R  I  S  D  R  I  W  L  R  N  V  A  G  F  D  S  A  E  A  G  S  G  T  S  E  A  T  Q  S  E  E  :  V  S  G  E  D  N  E  G  G  F  L  K  L  K  S  T  K  E  W  L  S  G  D  A  T  A  P  V  N  K  K  R  T  F  K  :  E  I  Q  D  D  R  E  R  T  K  R  L  N  F  L  Q  Y  E  A  :  L  K  R  E  L  L  F  L  T  V  G  I  G  T  A  C  T  G  Y  C  L  V  V  L  S  V  Q  :  A  A  L  S  Y  A  T  G  V  V  F  S :   C  L  Y  Y  Q  L  L  C  Q  H  A  D  N  L  S  Q  E  T  V  P  D  I  F  T  K  K  K  L  K  K :   I  G  I  R  S  E  D  L  Q  D  F  F  E  K  S  V  K  G  S  S  I  A  L  S  S  P  R  L  V  I  P  A  A  I  Y  G  L  W  E  L  S  Q  H  F  A  H  D  L  F  D  F  Q  :  L  V  P  A  M  V  G  L  F  V  Y  K  A  A  C  L  V  Q  V  Y  R  D  N  E  D  L  Q  F  L  F  P  G  N  E  E  G  S  G  D  *  I  S  G  I  C  Y  L  L  M  R  W  *  S  W  M  S  T  *  L  H  L  L   : A  *  Q  R  V  T  D  K  Q  Q  A  E  S  L  Q  S  R  T  S  F  M  M  S  C  L  L  R  K  Q  D  R  R  D  E  Y  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3956" stop="4151"/>
                    <exon start="4701" stop="4867"/>
                    <exon start="4956" stop="5060"/>
                    <exon start="5162" stop="5218"/>
                    <exon start="5916" stop="5996"/>
                    <exon start="6461" stop="6495"/>
                    <exon start="6767" stop="6856"/>
                    <exon start="6953" stop="7109"/>
                    <exon start="7258" stop="7377"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1005</number_coding_nucleotides>
                  <number_encoded_amino_acids>335</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLYIYCINSVSYIRTEMVLPLCIPNHSHFISPLSSVEFSPPPPQRRRARPRFTTVLSVLKTSRPVSEVTVDDALRDFLRDRELKGDVISRISDRIWLRNVAGFDSAEAGSGTSEATQSEEVSGEDNEGGFLKLKSTKEWLSGDATAPVNKKRTFKEIQDDRERTKRLNFLQYEALKRELLFLTVGIGTACTGYCLVVLSVQAALSYATGVVFSCLYYQLLCQHADNLSQETVPDIFTKKKLKKIGIRSEDLQDFFEKSVKGSSIALSSPRLVIPAAIYGLWELSQHFAHDLFDFQLVPAMVGLFVYKAACLVQVYRDNEDLQFLFPGNEEGSGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="13898" PGL_stop="25501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15261" e_stop="15303"/>
            <exon e_start="15991" e_stop="16057"/>
            <exon e_start="17184" e_stop="17276"/>
            <exon e_start="17356" e_stop="17520"/>
            <exon e_start="17609" e_stop="17749"/>
            <exon e_start="17846" e_stop="17923"/>
            <exon e_start="18837" e_stop="18949"/>
            <exon e_start="19028" e_stop="19088"/>
            <exon e_start="20116" e_stop="20283"/>
            <exon e_start="21119" e_stop="21220"/>
            <exon e_start="21451" e_stop="21540"/>
            <exon e_start="21711" e_stop="22140"/>
            <exon e_start="24480" e_stop="24504"/>
            <exon e_start="25494" e_stop="25501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.922" acc_prob="0.252" e_score="0.880"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15261" e_stop="15303" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="16057" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17184" e_stop="17276" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17356" e_stop="17520" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17609" e_stop="17749" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17846" e_stop="17923" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18837" e_stop="18949" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.668">
            <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19028" e_stop="19088" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.920" acc_prob="0.834">
            <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20116" e_stop="20283" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21119" e_stop="21220" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="21451" e_stop="21540" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.865" acc_prob="0.726">
            <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170"/>
          </intron>
          <exon e_serial="12" e_score="0.995">
            <gDNA_exon_boundary e_start="21711" e_stop="22140" e_length="430"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22141" i_stop="24479" i_length="2339"/>
          </intron>
          <exon e_serial="13" e_score="0.880">
            <gDNA_exon_boundary e_start="24480" e_stop="24504" e_length="25"/>
          </exon>
          <intron i_serial="13" don_prob="0.922" acc_prob="0.252">
            <gDNA_intron_boundary i_start="24505" i_stop="25493" i_length="989"/>
          </intron>
          <exon e_serial="14" e_score="0.875">
            <gDNA_exon_boundary e_start="25494" e_stop="25501" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15261" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15269" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17444" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17493" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17642" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19051" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20146" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22140"/>
              <exon start="24480" stop="24504"/>
              <exon start="25494" stop="25501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG : ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG : GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG : GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG : TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG : GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA : GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG : ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA : AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG : GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG : GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG : GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTT : AAAAAAAAAAAAAAATTAAAAAAAG : AAAAATAA</gDNA_template>
            <first_frame> E  M  M  L  V  V  N  L  Q  L  L  Q  Q  A   : D  T  S  L  L  L  L  P  Q  I  L  R  K  L  H  L  P  P  L  Q  I  F  R :   D  G  Y  P  G  L  N  L  M  E  T  Q  V  N  S  L  L  L  P  *  W  L  R  M  T  R  L  G  L  H  R :   H  C  Q  L  E  V  I  A  M  E  V  V  L  W  H  F  L  R  *  L  G  C  F  L  F  C  I  Q  I  L  K  Q  G  V  D  I  T  Y  F  L  D  *  R  L  V  G  L  I  T  S  T  E  L  R  S :   G  F  E  V  L  T  N  A  Y  G  R  V  S  T  M  P  F  A  *  I  V  L  A  P  W  A  M  S  Y  I  F  M  F  L  N  L  L  K  T  H  T  Y  N  K  Y  F  R :   V  S  P  V  *  Q  K  N  R  G  F  K  L  V  L  S  T  K  K  *  T  S  P  V  L  E :   *  P  G  S  M  S  S  F  Q  G  C  E  S  L  Q  Q  Q  F  L  S  F  L  L  H  L  N  C  *  K  A  L  E  V  C  L  I  T   : D  V  L  L  V  K  P  P  S  F  E  V  S  S  L  L  L  K  V  *  Q :   D  I  Y  T  A  R  K  E  K  A  Q  I  Y  L  Q  T  M  V  V  *  L  S  I  L  P  M  Y  G  P  G  W  I  F  C  L  L  P  L  E  W  H  L  F  F  Q  R  V  T  H  L  S  W  H  C  K  R :   N  *  L  I  I  L  L  R  *  M  Y  S  M  R  R  *  T  R  L  S  L  F  M  I  Q  L  V  A  D  Y  M  Y  I  R :   L  R  A  *  L  L  T  C  S  C  C  W  F  L  D  H  T  *  *  H  F  S  V  F  S  L  S  P  P  G :   V  L  T  I  L  S  V  Y  S  D  V  L  H  P  G  K  *  K  L  C  D  F  L  R  W  G  Y  V  H  T  *  G  L  Q  *  T  M  N  C  S  P  S  I  C  S  L  T  C  R  Y  L  E  A  F  D  E  F  P  W  E  K  L  H  I  F  Y  F  G  G  A  T  T  C  I  V  I  N  F  L  L  S  Y  K  C  N  F  H  N  M  L  L  R  D  V  N  F  E  L  H  I  N  L  P  A  V  I  T  L  I  C  R  Q  L  T  I  E  T  I  E  K  *  V  V  S  R  L  *  H  A  I  C  I  I  N  *  Y  Q  V  K  T  L  L  V  :  K  K  K  K  K  L  K  K   : E  K  * </first_frame>
            <second_frame>  K  *  C  *  W  S  T  C  N  C  Y  N  R  R  :  I  Q  A  C  C  C  C  L  R  S  *  E  N  C  I  S  H  H  Y  K  Y  S   : G  M  V  T  R  A  *  T  *  W  R  L  K  S  T  P  Y  Y  C  H  S  G  F  V  *  H  V  W  G  C  T   : G  I  V  S  W  K  *  *  Q  W  K  W  C  C  G  T  S  *  D  S  *  A  V  F  C  S  V  F  K  S  *  N  K  G  *  I  *  L  T  F  W  I  D  V  W  W  A  L  *  L  Q  R  N  S  E   : V  A  S  K  F  *  P  T  P  T  G  E  Y  R  L  C  H  L  L  E  *  S  W  L  L  G  Q  *  V  T  S  S  C  F  *  T  S  *  K  H  I  H  T  T  N  I  S   : G  F  L  Q  C  S  R  R  I  G  A  S  S  W  S  *  A  Q  K  N  K  H  L  Q  S  S   : S  S  L  G  A  *  A  V  F  K  A  A  S  H  C  S  N  N  F  *  A  F  Y  C  T  *  I  V  R  R  H  W  K  F  V  *  *  Q  :  T  F  C  *  *  S  L  H  H  S  K  C  Q  A  C  C  *  K  C  S   : K  T  Y  I  Q  P  G  R  K  R  H  K  Y  I  C  R  R  W  *  F  S  C  Q  S  F  L  C  T  V  L  A  G  S  F  V  Y  Y  L  S  S  G  T  F  S  F  K  E  *  P  T  Y  H  G  T  A  K   : G  I  S  *  S  Y  C  *  G  E  C  T  A  *  D  A  R  R  D  F  H  F  L  *  F  N  *  W  Q  I  T  C  I  S   : G  C  E  R  D  F  *  L  A  L  A  V  G  S  W  I  I  L  D  N  T  F  Q  F  S  R  Y  H  H  Q   : G  S  *  R  S  Y  Q  S  I  P  T  S  S  I  P  E  S  E  S  C  V  I  S  *  G  G  D  M  F  T  L  E  V  S  S  K  L  *  I  A  H  H  R  S  V  V  *  R  V  V  I  *  K  L  S  T  N  F  H  G  R  N  S  T  Y  F  T  L  V  V  R  L  H  A  *  L  *  I  F  C  L  V  T  N  V  I  S  I  T  C  Y  L  E  M  L  T  S  S  F  I  L  I  C  R  Q  L  S  H  *  F  A  D  S  *  P  L  K  L  S  K  N  K  L  F  P  D  Y  N  M  Q  F  V  L  L  I  N  I  K  *  R  H  F  *  L :   K  K  K  K  N  *  K  K  :  K  N   </second_frame>
            <third_frame>   N  D  A  S  G  Q  P  A  T  A  T  T  G  G :   Y  K  L  V  V  A  A  S  D  P  K  K  I  A  S  P  T  I  T  N  I  Q  :  G  W  L  P  G  L  K  P  D  G  D  S  S  Q  L  P  T  I  A  I  V  A  S  Y  D  T  F  G  A  A  P  :  A  L  S  V  G  S  D  S  N  G  S  G  V  V  A  L  L  E  I  A  R  L  F  S  V  L  Y  S  N  P  K  T  R  G  R  Y  N  L  L  F  G  L  T  S  G  G  P  Y  N  F  N  G  T  Q  K  :  W  L  R  S  F  D  Q  R  L  R  E  S  I  D  Y  A  I  C  L  N  S  L  G  S  L  G  N  E  L  H  L  H  V  S  K  P  P  E  N  T  Y  I  Q  Q  I  F  Q  :  G  F  S  S  V  A  E  E  S  G  L  Q  V  G  L  K  H  K  K  I  N  I  S  S  P  R  :  V  A  W  E  H  E  Q  F  S  R  L  R  V  T  A  A  T  I  S  E  L  S  T  A  P  E  L  L  E  G  T  G  S  L  S  D  N  R :   R  S  V  S  E  A  S  I  I  R  S  V  K  L  V  A  E  S  V  A  :  R  H  I  Y  S  Q  E  G  K  G  T  N  I  F  A  D  D  G  S  L  A  V  N  P  S  Y  V  R  S  W  L  D  L  L  S  T  T  S  R  V  A  P  F  L  S  K  S  D  P  L  I  M  A  L  Q  K  :  E  L  A  D  H  T  A  E  V  N  V  Q  H  E  T  L  D  E  T  F  T  F  Y  D  S  I  S  G  R  L  H  V  Y  Q  :  V  A  S  V  T  F  D  L  L  L  L  L  V  L  G  S  Y  L  I  T  L  F  S  F  L  V  I  T  T  R  :  G  L  D  D  L  I  S  L  F  R  R  P  P  S  R  K  V  K  A  V  *  F  L  E  V  G  I  C  S  H  L  R  S  P  V  N  Y  E  L  L  T  I  D  L  *  F  N  V  S  L  F  R  S  F  R  R  I  S  M  G  E  T  P  H  I  L  L  W  W  C  D  Y  M  H  S  Y  K  F  F  A  *  L  Q  M  *  F  P  *  H  A  T  *  R  C  *  L  R  A  S  Y  *  F  A  G  S  Y  H  I  D  L  Q  T  V  N  H  *  N  Y  R  K  I  S  C  F  Q  I  I  T  C  N  L  Y  Y  *  L  I  S  S  K  D  T  F  S   : *  K  K  K  K  I  K  K  R :   K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15263" stop="15303"/>
                    <exon start="15991" stop="16057"/>
                    <exon start="17184" stop="17276"/>
                    <exon start="17356" stop="17520"/>
                    <exon start="17609" stop="17749"/>
                    <exon start="17846" stop="17923"/>
                    <exon start="18837" stop="18949"/>
                    <exon start="19028" stop="19088"/>
                    <exon start="20116" stop="20283"/>
                    <exon start="21119" stop="21220"/>
                    <exon start="21451" stop="21540"/>
                    <exon start="21711" stop="21773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDASGQPATATTGGYKLVVAASDPKKIASPTITNIQGWLPGLKPDGDSSQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKWLRSFDQRLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQGFSSVAEESGLQVGLKHKKINISSPRVAWEHEQFSRLRVTAATISELSTAPELLEGTGSLSDNRRSVSEASIIRSVKLVAESVARHIYSQEGKGTNIFADDGSLAVNPSYVRSWLDLLSTTSRVAPFLSKSDPLIMALQKELADHTAEVNVQHETLDETFTFYDSISGRLHVYQVASVTFDLLLLLVLGSYLITLFSFLVITTRGLDDLISLFRRPPSRKVKAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21817" stop="22074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMNCSPSICSLTCRYLEAFDEFPWEKLHIFYFGGATTCIVINFLLSYKCNFHNMLLRDVNFELHINLPAVITLICRQLTIETIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15261" e_stop="15303"/>
            <exon e_start="15991" e_stop="16057"/>
            <exon e_start="17184" e_stop="17276"/>
            <exon e_start="17356" e_stop="17520"/>
            <exon e_start="17609" e_stop="17749"/>
            <exon e_start="17846" e_stop="17923"/>
            <exon e_start="18837" e_stop="18949"/>
            <exon e_start="19028" e_stop="19088"/>
            <exon e_start="20116" e_stop="20283"/>
            <exon e_start="21119" e_stop="21220"/>
            <exon e_start="21451" e_stop="21540"/>
            <exon e_start="21711" e_stop="22142"/>
            <exon e_start="24480" e_stop="24504"/>
            <exon e_start="25494" e_stop="25501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.922" acc_prob="0.252" e_score="0.880"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15261" e_stop="15303" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="16057" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17184" e_stop="17276" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17356" e_stop="17520" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17609" e_stop="17749" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17846" e_stop="17923" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18837" e_stop="18949" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.668">
            <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19028" e_stop="19088" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.920" acc_prob="0.834">
            <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20116" e_stop="20283" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21119" e_stop="21220" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="21451" e_stop="21540" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.865" acc_prob="0.726">
            <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170"/>
          </intron>
          <exon e_serial="12" e_score="0.961">
            <gDNA_exon_boundary e_start="21711" e_stop="22142" e_length="432"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22143" i_stop="24479" i_length="2337"/>
          </intron>
          <exon e_serial="13" e_score="0.880">
            <gDNA_exon_boundary e_start="24480" e_stop="24504" e_length="25"/>
          </exon>
          <intron i_serial="13" don_prob="0.922" acc_prob="0.252">
            <gDNA_intron_boundary i_start="24505" i_stop="25493" i_length="989"/>
          </intron>
          <exon e_serial="14" e_score="0.875">
            <gDNA_exon_boundary e_start="25494" e_stop="25501" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15261" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15269" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17444" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17493" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17642" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19051" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20146" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20259" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22142"/>
              <exon start="24480" stop="24504"/>
              <exon start="25494" stop="25501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG : ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG : GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG : GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG : TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG : GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA : GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG : ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA : AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG : GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG : GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG : GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTTAT : AAAAAAAAAAAAAAATTAAAAAAAG : AAAAATAA</gDNA_template>
            <first_frame> E  M  M  L  V  V  N  L  Q  L  L  Q  Q  A   : D  T  S  L  L  L  L  P  Q  I  L  R  K  L  H  L  P  P  L  Q  I  F  R :   D  G  Y  P  G  L  N  L  M  E  T  Q  V  N  S  L  L  L  P  *  W  L  R  M  T  R  L  G  L  H  R :   H  C  Q  L  E  V  I  A  M  E  V  V  L  W  H  F  L  R  *  L  G  C  F  L  F  C  I  Q  I  L  K  Q  G  V  D  I  T  Y  F  L  D  *  R  L  V  G  L  I  T  S  T  E  L  R  S :   G  F  E  V  L  T  N  A  Y  G  R  V  S  T  M  P  F  A  *  I  V  L  A  P  W  A  M  S  Y  I  F  M  F  L  N  L  L  K  T  H  T  Y  N  K  Y  F  R :   V  S  P  V  *  Q  K  N  R  G  F  K  L  V  L  S  T  K  K  *  T  S  P  V  L  E :   *  P  G  S  M  S  S  F  Q  G  C  E  S  L  Q  Q  Q  F  L  S  F  L  L  H  L  N  C  *  K  A  L  E  V  C  L  I  T   : D  V  L  L  V  K  P  P  S  F  E  V  S  S  L  L  L  K  V  *  Q :   D  I  Y  T  A  R  K  E  K  A  Q  I  Y  L  Q  T  M  V  V  *  L  S  I  L  P  M  Y  G  P  G  W  I  F  C  L  L  P  L  E  W  H  L  F  F  Q  R  V  T  H  L  S  W  H  C  K  R :   N  *  L  I  I  L  L  R  *  M  Y  S  M  R  R  *  T  R  L  S  L  F  M  I  Q  L  V  A  D  Y  M  Y  I  R :   L  R  A  *  L  L  T  C  S  C  C  W  F  L  D  H  T  *  *  H  F  S  V  F  S  L  S  P  P  G :   V  L  T  I  L  S  V  Y  S  D  V  L  H  P  G  K  *  K  L  C  D  F  L  R  W  G  Y  V  H  T  *  G  L  Q  *  T  M  N  C  S  P  S  I  C  S  L  T  C  R  Y  L  E  A  F  D  E  F  P  W  E  K  L  H  I  F  Y  F  G  G  A  T  T  C  I  V  I  N  F  L  L  S  Y  K  C  N  F  H  N  M  L  L  R  D  V  N  F  E  L  H  I  N  L  P  A  V  I  T  L  I  C  R  Q  L  T  I  E  T  I  E  K  *  V  V  S  R  L  *  H  A  I  C  I  I  N  *  Y  Q  V  K  T  L  L  V  I :   K  K  K  K  N  *  K  K  :  K  N   </first_frame>
            <second_frame>  K  *  C  *  W  S  T  C  N  C  Y  N  R  R  :  I  Q  A  C  C  C  C  L  R  S  *  E  N  C  I  S  H  H  Y  K  Y  S   : G  M  V  T  R  A  *  T  *  W  R  L  K  S  T  P  Y  Y  C  H  S  G  F  V  *  H  V  W  G  C  T   : G  I  V  S  W  K  *  *  Q  W  K  W  C  C  G  T  S  *  D  S  *  A  V  F  C  S  V  F  K  S  *  N  K  G  *  I  *  L  T  F  W  I  D  V  W  W  A  L  *  L  Q  R  N  S  E   : V  A  S  K  F  *  P  T  P  T  G  E  Y  R  L  C  H  L  L  E  *  S  W  L  L  G  Q  *  V  T  S  S  C  F  *  T  S  *  K  H  I  H  T  T  N  I  S   : G  F  L  Q  C  S  R  R  I  G  A  S  S  W  S  *  A  Q  K  N  K  H  L  Q  S  S   : S  S  L  G  A  *  A  V  F  K  A  A  S  H  C  S  N  N  F  *  A  F  Y  C  T  *  I  V  R  R  H  W  K  F  V  *  *  Q  :  T  F  C  *  *  S  L  H  H  S  K  C  Q  A  C  C  *  K  C  S   : K  T  Y  I  Q  P  G  R  K  R  H  K  Y  I  C  R  R  W  *  F  S  C  Q  S  F  L  C  T  V  L  A  G  S  F  V  Y  Y  L  S  S  G  T  F  S  F  K  E  *  P  T  Y  H  G  T  A  K   : G  I  S  *  S  Y  C  *  G  E  C  T  A  *  D  A  R  R  D  F  H  F  L  *  F  N  *  W  Q  I  T  C  I  S   : G  C  E  R  D  F  *  L  A  L  A  V  G  S  W  I  I  L  D  N  T  F  Q  F  S  R  Y  H  H  Q   : G  S  *  R  S  Y  Q  S  I  P  T  S  S  I  P  E  S  E  S  C  V  I  S  *  G  G  D  M  F  T  L  E  V  S  S  K  L  *  I  A  H  H  R  S  V  V  *  R  V  V  I  *  K  L  S  T  N  F  H  G  R  N  S  T  Y  F  T  L  V  V  R  L  H  A  *  L  *  I  F  C  L  V  T  N  V  I  S  I  T  C  Y  L  E  M  L  T  S  S  F  I  L  I  C  R  Q  L  S  H  *  F  A  D  S  *  P  L  K  L  S  K  N  K  L  F  P  D  Y  N  M  Q  F  V  L  L  I  N  I  K  *  R  H  F  *  L   : *  K  K  K  K  I  K  K  R :   K  I  </second_frame>
            <third_frame>   N  D  A  S  G  Q  P  A  T  A  T  T  G  G :   Y  K  L  V  V  A  A  S  D  P  K  K  I  A  S  P  T  I  T  N  I  Q  :  G  W  L  P  G  L  K  P  D  G  D  S  S  Q  L  P  T  I  A  I  V  A  S  Y  D  T  F  G  A  A  P  :  A  L  S  V  G  S  D  S  N  G  S  G  V  V  A  L  L  E  I  A  R  L  F  S  V  L  Y  S  N  P  K  T  R  G  R  Y  N  L  L  F  G  L  T  S  G  G  P  Y  N  F  N  G  T  Q  K  :  W  L  R  S  F  D  Q  R  L  R  E  S  I  D  Y  A  I  C  L  N  S  L  G  S  L  G  N  E  L  H  L  H  V  S  K  P  P  E  N  T  Y  I  Q  Q  I  F  Q  :  G  F  S  S  V  A  E  E  S  G  L  Q  V  G  L  K  H  K  K  I  N  I  S  S  P  R  :  V  A  W  E  H  E  Q  F  S  R  L  R  V  T  A  A  T  I  S  E  L  S  T  A  P  E  L  L  E  G  T  G  S  L  S  D  N  R :   R  S  V  S  E  A  S  I  I  R  S  V  K  L  V  A  E  S  V  A  :  R  H  I  Y  S  Q  E  G  K  G  T  N  I  F  A  D  D  G  S  L  A  V  N  P  S  Y  V  R  S  W  L  D  L  L  S  T  T  S  R  V  A  P  F  L  S  K  S  D  P  L  I  M  A  L  Q  K  :  E  L  A  D  H  T  A  E  V  N  V  Q  H  E  T  L  D  E  T  F  T  F  Y  D  S  I  S  G  R  L  H  V  Y  Q  :  V  A  S  V  T  F  D  L  L  L  L  L  V  L  G  S  Y  L  I  T  L  F  S  F  L  V  I  T  T  R  :  G  L  D  D  L  I  S  L  F  R  R  P  P  S  R  K  V  K  A  V  *  F  L  E  V  G  I  C  S  H  L  R  S  P  V  N  Y  E  L  L  T  I  D  L  *  F  N  V  S  L  F  R  S  F  R  R  I  S  M  G  E  T  P  H  I  L  L  W  W  C  D  Y  M  H  S  Y  K  F  F  A  *  L  Q  M  *  F  P  *  H  A  T  *  R  C  *  L  R  A  S  Y  *  F  A  G  S  Y  H  I  D  L  Q  T  V  N  H  *  N  Y  R  K  I  S  C  F  Q  I  I  T  C  N  L  Y  Y  *  L  I  S  S  K  D  T  F  S  Y  :  K  K  K  K  K  L  K  K   : E  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15263" stop="15303"/>
                    <exon start="15991" stop="16057"/>
                    <exon start="17184" stop="17276"/>
                    <exon start="17356" stop="17520"/>
                    <exon start="17609" stop="17749"/>
                    <exon start="17846" stop="17923"/>
                    <exon start="18837" stop="18949"/>
                    <exon start="19028" stop="19088"/>
                    <exon start="20116" stop="20283"/>
                    <exon start="21119" stop="21220"/>
                    <exon start="21451" stop="21540"/>
                    <exon start="21711" stop="21773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDASGQPATATTGGYKLVVAASDPKKIASPTITNIQGWLPGLKPDGDSSQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKWLRSFDQRLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQGFSSVAEESGLQVGLKHKKINISSPRVAWEHEQFSRLRVTAATISELSTAPELLEGTGSLSDNRRSVSEASIIRSVKLVAESVARHIYSQEGKGTNIFADDGSLAVNPSYVRSWLDLLSTTSRVAPFLSKSDPLIMALQKELADHTAEVNVQHETLDETFTFYDSISGRLHVYQVASVTFDLLLLLVLGSYLITLFSFLVITTRGLDDLISLFRRPPSRKVKAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21817" stop="22074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMNCSPSICSLTCRYLEAFDEFPWEKLHIFYFGGATTCIVINFLLSYKCNFHNMLLRDVNFELHINLPAVITLICRQLTIETIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15261" e_stop="15303"/>
            <exon e_start="15991" e_stop="16057"/>
            <exon e_start="17184" e_stop="17276"/>
            <exon e_start="17356" e_stop="17520"/>
            <exon e_start="17609" e_stop="17749"/>
            <exon e_start="17846" e_stop="17923"/>
            <exon e_start="18837" e_stop="18949"/>
            <exon e_start="19028" e_stop="19088"/>
            <exon e_start="20116" e_stop="20283"/>
            <exon e_start="21119" e_stop="21220"/>
            <exon e_start="21451" e_stop="21540"/>
            <exon e_start="21711" e_stop="22092"/>
            <exon e_start="22240" e_stop="22256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.239" e_score="0.990"/>
          <exon-only e_score="0.706"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15261" e_stop="15303" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="16057" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17184" e_stop="17276" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17277" i_stop="17355" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17356" e_stop="17520" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17609" e_stop="17749" e_length="141"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17846" e_stop="17923" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18837" e_stop="18949" e_length="113"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.668">
            <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19028" e_stop="19088" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.920" acc_prob="0.834">
            <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="20116" e_stop="20283" e_length="168"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21119" e_stop="21220" e_length="102"/>
          </exon>
          <intron i_serial="10" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="21451" e_stop="21540" e_length="90"/>
          </exon>
          <intron i_serial="11" don_prob="0.865" acc_prob="0.726">
            <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170"/>
          </intron>
          <exon e_serial="12" e_score="0.990">
            <gDNA_exon_boundary e_start="21711" e_stop="22092" e_length="382"/>
          </exon>
          <intron i_serial="12" don_prob="0.000" acc_prob="0.239">
            <gDNA_intron_boundary i_start="22093" i_stop="22239" i_length="147"/>
          </intron>
          <exon e_serial="13" e_score="0.706">
            <gDNA_exon_boundary e_start="22240" e_stop="22256" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15261" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15269" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17212" stop="17276"/>
              <exon start="17356" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17444" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17493" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17642" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19051" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21539" stop="21540"/>
              <exon start="21711" stop="22092"/>
              <exon start="22240" stop="22256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG : ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG : GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACCG : GCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG : TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG : GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA : GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG : ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA : AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG : GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG : GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG : GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAA : AAATAGTCAAAAACAAA</gDNA_template>
            <first_frame> E  M  M  L  V  V  N  L  Q  L  L  Q  Q  A   : D  T  S  L  L  L  L  P  Q  I  L  R  K  L  H  L  P  P  L  Q  I  F  R :   D  G  Y  P  G  L  N  L  M  E  T  Q  V  N  S  L  L  L  P  *  W  L  R  M  T  R  L  G  L  H  R :   H  C  Q  L  E  V  I  A  M  E  V  V  L  W  H  F  L  R  *  L  G  C  F  L  F  C  I  Q  I  L  K  Q  G  V  D  I  T  Y  F  L  D  *  R  L  V  G  L  I  T  S  T  E  L  R  S :   G  F  E  V  L  T  N  A  Y  G  R  V  S  T  M  P  F  A  *  I  V  L  A  P  W  A  M  S  Y  I  F  M  F  L  N  L  L  K  T  H  T  Y  N  K  Y  F  R :   V  S  P  V  *  Q  K  N  R  G  F  K  L  V  L  S  T  K  K  *  T  S  P  V  L  E :   *  P  G  S  M  S  S  F  Q  G  C  E  S  L  Q  Q  Q  F  L  S  F  L  L  H  L  N  C  *  K  A  L  E  V  C  L  I  T   : D  V  L  L  V  K  P  P  S  F  E  V  S  S  L  L  L  K  V  *  Q :   D  I  Y  T  A  R  K  E  K  A  Q  I  Y  L  Q  T  M  V  V  *  L  S  I  L  P  M  Y  G  P  G  W  I  F  C  L  L  P  L  E  W  H  L  F  F  Q  R  V  T  H  L  S  W  H  C  K  R :   N  *  L  I  I  L  L  R  *  M  Y  S  M  R  R  *  T  R  L  S  L  F  M  I  Q  L  V  A  D  Y  M  Y  I  R :   L  R  A  *  L  L  T  C  S  C  C  W  F  L  D  H  T  *  *  H  F  S  V  F  S  L  S  P  P  G :   V  L  T  I  L  S  V  Y  S  D  V  L  H  P  G  K  *  K  L  C  D  F  L  R  W  G  Y  V  H  T  *  G  L  Q  *  T  M  N  C  S  P  S  I  C  S  L  T  C  R  Y  L  E  A  F  D  E  F  P  W  E  K  L  H  I  F  Y  F  G  G  A  T  T  C  I  V  I  N  F  L  L  S  Y  K  C  N  F  H  N  M  L  L  R  D  V  N  F  E  L  H  I  N  L  P  A  V  I  T  L  I  C  R  Q  L  T  I  E  T  I  E  K  *  V  V  S  R  L  *  :  K  *  S  K  T   </first_frame>
            <second_frame>  K  *  C  *  W  S  T  C  N  C  Y  N  R  R  :  I  Q  A  C  C  C  C  L  R  S  *  E  N  C  I  S  H  H  Y  K  Y  S   : G  M  V  T  R  A  *  T  *  W  R  L  K  S  T  P  Y  Y  C  H  S  G  F  V  *  H  V  W  G  C  T   : G  I  V  S  W  K  *  *  Q  W  K  W  C  C  G  T  S  *  D  S  *  A  V  F  C  S  V  F  K  S  *  N  K  G  *  I  *  L  T  F  W  I  D  V  W  W  A  L  *  L  Q  R  N  S  E   : V  A  S  K  F  *  P  T  P  T  G  E  Y  R  L  C  H  L  L  E  *  S  W  L  L  G  Q  *  V  T  S  S  C  F  *  T  S  *  K  H  I  H  T  T  N  I  S   : G  F  L  Q  C  S  R  R  I  G  A  S  S  W  S  *  A  Q  K  N  K  H  L  Q  S  S   : S  S  L  G  A  *  A  V  F  K  A  A  S  H  C  S  N  N  F  *  A  F  Y  C  T  *  I  V  R  R  H  W  K  F  V  *  *  Q  :  T  F  C  *  *  S  L  H  H  S  K  C  Q  A  C  C  *  K  C  S   : K  T  Y  I  Q  P  G  R  K  R  H  K  Y  I  C  R  R  W  *  F  S  C  Q  S  F  L  C  T  V  L  A  G  S  F  V  Y  Y  L  S  S  G  T  F  S  F  K  E  *  P  T  Y  H  G  T  A  K   : G  I  S  *  S  Y  C  *  G  E  C  T  A  *  D  A  R  R  D  F  H  F  L  *  F  N  *  W  Q  I  T  C  I  S   : G  C  E  R  D  F  *  L  A  L  A  V  G  S  W  I  I  L  D  N  T  F  Q  F  S  R  Y  H  H  Q   : G  S  *  R  S  Y  Q  S  I  P  T  S  S  I  P  E  S  E  S  C  V  I  S  *  G  G  D  M  F  T  L  E  V  S  S  K  L  *  I  A  H  H  R  S  V  V  *  R  V  V  I  *  K  L  S  T  N  F  H  G  R  N  S  T  Y  F  T  L  V  V  R  L  H  A  *  L  *  I  F  C  L  V  T  N  V  I  S  I  T  C  Y  L  E  M  L  T  S  S  F  I  L  I  C  R  Q  L  S  H  *  F  A  D  S  *  P  L  K  L  S  K  N  K  L  F  P  D  Y  K :   N  S  Q  K  Q  </second_frame>
            <third_frame>   N  D  A  S  G  Q  P  A  T  A  T  T  G  G :   Y  K  L  V  V  A  A  S  D  P  K  K  I  A  S  P  T  I  T  N  I  Q  :  G  W  L  P  G  L  K  P  D  G  D  S  S  Q  L  P  T  I  A  I  V  A  S  Y  D  T  F  G  A  A  P  :  A  L  S  V  G  S  D  S  N  G  S  G  V  V  A  L  L  E  I  A  R  L  F  S  V  L  Y  S  N  P  K  T  R  G  R  Y  N  L  L  F  G  L  T  S  G  G  P  Y  N  F  N  G  T  Q  K  :  W  L  R  S  F  D  Q  R  L  R  E  S  I  D  Y  A  I  C  L  N  S  L  G  S  L  G  N  E  L  H  L  H  V  S  K  P  P  E  N  T  Y  I  Q  Q  I  F  Q  :  G  F  S  S  V  A  E  E  S  G  L  Q  V  G  L  K  H  K  K  I  N  I  S  S  P  R  :  V  A  W  E  H  E  Q  F  S  R  L  R  V  T  A  A  T  I  S  E  L  S  T  A  P  E  L  L  E  G  T  G  S  L  S  D  N  R :   R  S  V  S  E  A  S  I  I  R  S  V  K  L  V  A  E  S  V  A  :  R  H  I  Y  S  Q  E  G  K  G  T  N  I  F  A  D  D  G  S  L  A  V  N  P  S  Y  V  R  S  W  L  D  L  L  S  T  T  S  R  V  A  P  F  L  S  K  S  D  P  L  I  M  A  L  Q  K  :  E  L  A  D  H  T  A  E  V  N  V  Q  H  E  T  L  D  E  T  F  T  F  Y  D  S  I  S  G  R  L  H  V  Y  Q  :  V  A  S  V  T  F  D  L  L  L  L  L  V  L  G  S  Y  L  I  T  L  F  S  F  L  V  I  T  T  R  :  G  L  D  D  L  I  S  L  F  R  R  P  P  S  R  K  V  K  A  V  *  F  L  E  V  G  I  C  S  H  L  R  S  P  V  N  Y  E  L  L  T  I  D  L  *  F  N  V  S  L  F  R  S  F  R  R  I  S  M  G  E  T  P  H  I  L  L  W  W  C  D  Y  M  H  S  Y  K  F  F  A  *  L  Q  M  *  F  P  *  H  A  T  *  R  C  *  L  R  A  S  Y  *  F  A  G  S  Y  H  I  D  L  Q  T  V  N  H  *  N  Y  R  K  I  S  C  F  Q  I  I   : K  I  V  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15263" stop="15303"/>
                    <exon start="15991" stop="16057"/>
                    <exon start="17184" stop="17276"/>
                    <exon start="17356" stop="17520"/>
                    <exon start="17609" stop="17749"/>
                    <exon start="17846" stop="17923"/>
                    <exon start="18837" stop="18949"/>
                    <exon start="19028" stop="19088"/>
                    <exon start="20116" stop="20283"/>
                    <exon start="21119" stop="21220"/>
                    <exon start="21451" stop="21540"/>
                    <exon start="21711" stop="21773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDASGQPATATTGGYKLVVAASDPKKIASPTITNIQGWLPGLKPDGDSSQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKWLRSFDQRLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQGFSSVAEESGLQVGLKHKKINISSPRVAWEHEQFSRLRVTAATISELSTAPELLEGTGSLSDNRRSVSEASIIRSVKLVAESVARHIYSQEGKGTNIFADDGSLAVNPSYVRSWLDLLSTTSRVAPFLSKSDPLIMALQKELADHTAEVNVQHETLDETFTFYDSISGRLHVYQVASVTFDLLLLLVLGSYLITLFSFLVITTRGLDDLISLFRRPPSRKVKAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21817" stop="22074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMNCSPSICSLTCRYLEAFDEFPWEKLHIFYFGGATTCIVINFLLSYKCNFHNMLLRDVNFELHINLPAVITLICRQLTIETIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17354" e_stop="17520"/>
            <exon e_start="17609" e_stop="17749"/>
            <exon e_start="17846" e_stop="17923"/>
            <exon e_start="18837" e_stop="18949"/>
            <exon e_start="19028" e_stop="19088"/>
            <exon e_start="20116" e_stop="20283"/>
            <exon e_start="21119" e_stop="21220"/>
            <exon e_start="21451" e_stop="21540"/>
            <exon e_start="21711" e_stop="22140"/>
            <exon e_start="24480" e_stop="24504"/>
            <exon e_start="25494" e_stop="25501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.922" acc_prob="0.252" e_score="0.880"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="17354" e_stop="17520" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17521" i_stop="17608" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17609" e_stop="17749" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.990">
            <gDNA_intron_boundary i_start="17750" i_stop="17845" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17846" e_stop="17923" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="17924" i_stop="18836" i_length="913"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18837" e_stop="18949" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.668">
            <gDNA_intron_boundary i_start="18950" i_stop="19027" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19028" e_stop="19088" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.920" acc_prob="0.834">
            <gDNA_intron_boundary i_start="19089" i_stop="20115" i_length="1027"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20116" e_stop="20283" e_length="168"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20284" i_stop="21118" i_length="835"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21119" e_stop="21220" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21221" i_stop="21450" i_length="230"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21451" e_stop="21540" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.865" acc_prob="0.726">
            <gDNA_intron_boundary i_start="21541" i_stop="21710" i_length="170"/>
          </intron>
          <exon e_serial="9" e_score="0.995">
            <gDNA_exon_boundary e_start="21711" e_stop="22140" e_length="430"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22141" i_stop="24479" i_length="2339"/>
          </intron>
          <exon e_serial="10" e_score="0.880">
            <gDNA_exon_boundary e_start="24480" e_stop="24504" e_length="25"/>
          </exon>
          <intron i_serial="10" don_prob="0.922" acc_prob="0.252">
            <gDNA_intron_boundary i_start="24505" i_stop="25493" i_length="989"/>
          </intron>
          <exon e_serial="11" e_score="0.875">
            <gDNA_exon_boundary e_start="25494" e_stop="25501" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17354" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17402" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17444" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17493" stop="17520"/>
              <exon start="17609" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17642" stop="17749"/>
              <exon start="17846" stop="17923"/>
              <exon start="18837" stop="18949"/>
              <exon start="19028" stop="19049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19051" stop="19088"/>
              <exon start="20116" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20146" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="22140"/>
              <exon start="24480" stop="24504"/>
              <exon start="25494" stop="25501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20229" stop="20283"/>
              <exon start="21119" stop="21220"/>
              <exon start="21451" stop="21540"/>
              <exon start="21711" stop="21856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCATTGTCAGTTGGAAGTGATAGCAATGGAAGTGGTGTTGTGGCACTTCTTGAGATAGCTAGGCTGTTTTCTGTTCTGTATTCAAATCCTAAAACAAGGGGTAGATATAACTTACTTTTTGGATTGACGTCTGGTGGGCCTTATAACTTCAACGGAACTCAGAAG : TGGCTTCGAAGTTTTGACCAACGCCTACGGGAGAGTATCGACTATGCCATTTGCTTGAATAGTCTTGGCTCCTTGGGCAATGAGTTACATCTTCATGTTTCTAAACCTCCTGAAAACACATACATACAACAAATATTTCAG : GGTTTCTCCAGTGTAGCAGAAGAATCGGGGCTTCAAGTTGGTCTTAAGCACAAAAAAATAAACATCTCCAGTCCTCGA : GTAGCCTGGGAGCATGAGCAGTTTTCAAGGCTGCGAGTCACTGCAGCAACAATTTCTGAGCTTTCTACTGCACCTGAATTGTTAGAAGGCACTGGAAGTTTGTCTGATAACAG : ACGTTCTGTTAGTGAAGCCTCCATCATTCGAAGTGTCAAGCTTGTTGCTGAAAGTGTAGCA : AGACATATATACAGCCAGGAAGGAAAAGGCACAAATATATTTGCAGACGATGGTAGTTTAGCTGTCAATCCTTCCTATGTACGGTCCTGGCTGGATCTTTTGTCTACTACCTCTCGAGTGGCACCTTTTCTTTCAAAGAGTGACCCACTTATCATGGCACTGCAAAAG : GAATTAGCTGATCATACTGCTGAGGTGAATGTACAGCATGAGACGCTAGACGAGACTTTCACTTTTTATGATTCAATTAGTGGCAGATTACATGTATATCAG : GTTGCGAGCGTGACTTTTGACTTGCTCTTGCTGTTGGTTCTTGGATCATACTTGATAACACTTTTCAGTTTTCTCGTTATCACCACCAGG : GGTCTTGACGATCTTATCAGTCTATTCCGACGTCCTCCATCCCGGAAAGTGAAAGCTGTGTGATTTCTTGAGGTGGGGATATGTTCACACTTGAGGTCTCCAGTAAACTATGAATTGCTCACCATCGATCTGTAGTTTAACGTGTCGTTATTTAGAAGCTTTCGACGAATTTCCATGGGAGAAACTCCACATATTTTACTTTGGTGGTGCGACTACATGCATAGTTATAAATTTTTTGCTTAGTTACAAATGTAATTTCCATAACATGCTACTTAGAGATGTTAACTTCGAGCTTCATATTAATTTGCCGGCAGTTATCACATTGATTTGCAGACAGTTAACCATTGAAACTATCGAAAAATAAGTTGTTTCCAGATTATAACATGCAATTTGTATTATTAATTAATATCAAGTAAAGACACTTTTAGTT : AAAAAAAAAAAAAAATTAAAAAAAG : AAAAATAA</gDNA_template>
            <first_frame> R  H  C  Q  L  E  V  I  A  M  E  V  V  L  W  H  F  L  R  *  L  G  C  F  L  F  C  I  Q  I  L  K  Q  G  V  D  I  T  Y  F  L  D  *  R  L  V  G  L  I  T  S  T  E  L  R  S :   G  F  E  V  L  T  N  A  Y  G  R  V  S  T  M  P  F  A  *  I  V  L  A  P  W  A  M  S  Y  I  F  M  F  L  N  L  L  K  T  H  T  Y  N  K  Y  F  R :   V  S  P  V  *  Q  K  N  R  G  F  K  L  V  L  S  T  K  K  *  T  S  P  V  L  E :   *  P  G  S  M  S  S  F  Q  G  C  E  S  L  Q  Q  Q  F  L  S  F  L  L  H  L  N  C  *  K  A  L  E  V  C  L  I  T   : D  V  L  L  V  K  P  P  S  F  E  V  S  S  L  L  L  K  V  *  Q :   D  I  Y  T  A  R  K  E  K  A  Q  I  Y  L  Q  T  M  V  V  *  L  S  I  L  P  M  Y  G  P  G  W  I  F  C  L  L  P  L  E  W  H  L  F  F  Q  R  V  T  H  L  S  W  H  C  K  R :   N  *  L  I  I  L  L  R  *  M  Y  S  M  R  R  *  T  R  L  S  L  F  M  I  Q  L  V  A  D  Y  M  Y  I  R :   L  R  A  *  L  L  T  C  S  C  C  W  F  L  D  H  T  *  *  H  F  S  V  F  S  L  S  P  P  G :   V  L  T  I  L  S  V  Y  S  D  V  L  H  P  G  K  *  K  L  C  D  F  L  R  W  G  Y  V  H  T  *  G  L  Q  *  T  M  N  C  S  P  S  I  C  S  L  T  C  R  Y  L  E  A  F  D  E  F  P  W  E  K  L  H  I  F  Y  F  G  G  A  T  T  C  I  V  I  N  F  L  L  S  Y  K  C  N  F  H  N  M  L  L  R  D  V  N  F  E  L  H  I  N  L  P  A  V  I  T  L  I  C  R  Q  L  T  I  E  T  I  E  K  *  V  V  S  R  L  *  H  A  I  C  I  I  N  *  Y  Q  V  K  T  L  L  V  :  K  K  K  K  K  L  K  K   : E  K  * </first_frame>
            <second_frame>  G  I  V  S  W  K  *  *  Q  W  K  W  C  C  G  T  S  *  D  S  *  A  V  F  C  S  V  F  K  S  *  N  K  G  *  I  *  L  T  F  W  I  D  V  W  W  A  L  *  L  Q  R  N  S  E   : V  A  S  K  F  *  P  T  P  T  G  E  Y  R  L  C  H  L  L  E  *  S  W  L  L  G  Q  *  V  T  S  S  C  F  *  T  S  *  K  H  I  H  T  T  N  I  S   : G  F  L  Q  C  S  R  R  I  G  A  S  S  W  S  *  A  Q  K  N  K  H  L  Q  S  S   : S  S  L  G  A  *  A  V  F  K  A  A  S  H  C  S  N  N  F  *  A  F  Y  C  T  *  I  V  R  R  H  W  K  F  V  *  *  Q  :  T  F  C  *  *  S  L  H  H  S  K  C  Q  A  C  C  *  K  C  S   : K  T  Y  I  Q  P  G  R  K  R  H  K  Y  I  C  R  R  W  *  F  S  C  Q  S  F  L  C  T  V  L  A  G  S  F  V  Y  Y  L  S  S  G  T  F  S  F  K  E  *  P  T  Y  H  G  T  A  K   : G  I  S  *  S  Y  C  *  G  E  C  T  A  *  D  A  R  R  D  F  H  F  L  *  F  N  *  W  Q  I  T  C  I  S   : G  C  E  R  D  F  *  L  A  L  A  V  G  S  W  I  I  L  D  N  T  F  Q  F  S  R  Y  H  H  Q   : G  S  *  R  S  Y  Q  S  I  P  T  S  S  I  P  E  S  E  S  C  V  I  S  *  G  G  D  M  F  T  L  E  V  S  S  K  L  *  I  A  H  H  R  S  V  V  *  R  V  V  I  *  K  L  S  T  N  F  H  G  R  N  S  T  Y  F  T  L  V  V  R  L  H  A  *  L  *  I  F  C  L  V  T  N  V  I  S  I  T  C  Y  L  E  M  L  T  S  S  F  I  L  I  C  R  Q  L  S  H  *  F  A  D  S  *  P  L  K  L  S  K  N  K  L  F  P  D  Y  N  M  Q  F  V  L  L  I  N  I  K  *  R  H  F  *  L :   K  K  K  K  N  *  K  K  :  K  N   </second_frame>
            <third_frame>   A  L  S  V  G  S  D  S  N  G  S  G  V  V  A  L  L  E  I  A  R  L  F  S  V  L  Y  S  N  P  K  T  R  G  R  Y  N  L  L  F  G  L  T  S  G  G  P  Y  N  F  N  G  T  Q  K  :  W  L  R  S  F  D  Q  R  L  R  E  S  I  D  Y  A  I  C  L  N  S  L  G  S  L  G  N  E  L  H  L  H  V  S  K  P  P  E  N  T  Y  I  Q  Q  I  F  Q  :  G  F  S  S  V  A  E  E  S  G  L  Q  V  G  L  K  H  K  K  I  N  I  S  S  P  R  :  V  A  W  E  H  E  Q  F  S  R  L  R  V  T  A  A  T  I  S  E  L  S  T  A  P  E  L  L  E  G  T  G  S  L  S  D  N  R :   R  S  V  S  E  A  S  I  I  R  S  V  K  L  V  A  E  S  V  A  :  R  H  I  Y  S  Q  E  G  K  G  T  N  I  F  A  D  D  G  S  L  A  V  N  P  S  Y  V  R  S  W  L  D  L  L  S  T  T  S  R  V  A  P  F  L  S  K  S  D  P  L  I  M  A  L  Q  K  :  E  L  A  D  H  T  A  E  V  N  V  Q  H  E  T  L  D  E  T  F  T  F  Y  D  S  I  S  G  R  L  H  V  Y  Q  :  V  A  S  V  T  F  D  L  L  L  L  L  V  L  G  S  Y  L  I  T  L  F  S  F  L  V  I  T  T  R  :  G  L  D  D  L  I  S  L  F  R  R  P  P  S  R  K  V  K  A  V  *  F  L  E  V  G  I  C  S  H  L  R  S  P  V  N  Y  E  L  L  T  I  D  L  *  F  N  V  S  L  F  R  S  F  R  R  I  S  M  G  E  T  P  H  I  L  L  W  W  C  D  Y  M  H  S  Y  K  F  F  A  *  L  Q  M  *  F  P  *  H  A  T  *  R  C  *  L  R  A  S  Y  *  F  A  G  S  Y  H  I  D  L  Q  T  V  N  H  *  N  Y  R  K  I  S  C  F  Q  I  I  T  C  N  L  Y  Y  *  L  I  S  S  K  D  T  F  S   : *  K  K  K  K  I  K  K  R :   K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17356" stop="17520"/>
                    <exon start="17609" stop="17749"/>
                    <exon start="17846" stop="17923"/>
                    <exon start="18837" stop="18949"/>
                    <exon start="19028" stop="19088"/>
                    <exon start="20116" stop="20283"/>
                    <exon start="21119" stop="21220"/>
                    <exon start="21451" stop="21540"/>
                    <exon start="21711" stop="21773"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSVGSDSNGSGVVALLEIARLFSVLYSNPKTRGRYNLLFGLTSGGPYNFNGTQKWLRSFDQRLRESIDYAICLNSLGSLGNELHLHVSKPPENTYIQQIFQGFSSVAEESGLQVGLKHKKINISSPRVAWEHEQFSRLRVTAATISELSTAPELLEGTGSLSDNRRSVSEASIIRSVKLVAESVARHIYSQEGKGTNIFADDGSLAVNPSYVRSWLDLLSTTSRVAPFLSKSDPLIMALQKELADHTAEVNVQHETLDETFTFYDSISGRLHVYQVASVTFDLLLLLVLGSYLITLFSFLVITTRGLDDLISLFRRPPSRKVKAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21817" stop="22074"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMNCSPSICSLTCRYLEAFDEFPWEKLHIFYFGGATTCIVINFLLSYKCNFHNMLLRDVNFELHINLPAVITLICRQLTIETIEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="13898" e_stop="13917"/>
            <exon e_start="15200" e_stop="15303"/>
            <exon e_start="15991" e_stop="16057"/>
            <exon e_start="17184" e_stop="17275"/>
            <exon e_start="17356" e_stop="17388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13898" e_stop="13917" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="13918" i_stop="15199" i_length="1282"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15200" e_stop="15303" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15304" i_stop="15990" i_length="687"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15991" e_stop="16057" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16058" i_stop="17183" i_length="1126"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="17184" e_stop="17275" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17276" i_stop="17355" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17356" e_stop="17388" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13898" stop="13917"/>
              <exon start="15200" stop="15303"/>
              <exon start="15991" stop="16057"/>
              <exon start="17184" stop="17275"/>
              <exon start="17356" stop="17388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTCATGCTAACATTCCT : TATCCTGTGTATTTTGCTTTTGAGGATGATAATATCAATGCTGTACTAGCTGAAGTCAAGAGAAATGATGCTAGTGGTCAACCTGCAACTGCTACAACAGGCGG : ATACAAGCTTGTTGTTGCTGCCTCAGATCCTAAGAAAATTGCATCTCCCACCATTACAAATATTCAG : GGATGGTTACCCGGGCTTAAACCTGATGGAGACTCAAGTCAACTCCCTACTATTGCCATAGTGGCTTCGTATGACACGTTTGGGGCTGCACC : GCATTGTCAGTTGGAAGTGATAGCAATGGAAGT</gDNA_template>
            <first_frame> L  F  M  L  T  F  L :   I  L  C  I  L  L  L  R  M  I  I  S  M  L  Y  *  L  K  S  R  E  M  M  L  V  V  N  L  Q  L  L  Q  Q  A   : D  T  S  L  L  L  L  P  Q  I  L  R  K  L  H  L  P  P  L  Q  I  F  R :   D  G  Y  P  G  L  N  L  M  E  T  Q  V  N  S  L  L  L  P  *  W  L  R  M  T  R  L  G  L  H   : R  I  V  S  W  K  *  *  Q  W  K  </first_frame>
            <second_frame>  Y  S  C  *  H  S   : L  S  C  V  F  C  F  *  G  *  *  Y  Q  C  C  T  S  *  S  Q  E  K  *  C  *  W  S  T  C  N  C  Y  N  R  R  :  I  Q  A  C  C  C  C  L  R  S  *  E  N  C  I  S  H  H  Y  K  Y  S   : G  M  V  T  R  A  *  T  *  W  R  L  K  S  T  P  Y  Y  C  H  S  G  F  V  *  H  V  W  G  C  T  :  A  L  S  V  G  S  D  S  N  G  S </second_frame>
            <third_frame>   I  H  A  N  I  P  :  Y  P  V  Y  F  A  F  E  D  D  N  I  N  A  V  L  A  E  V  K  R  N  D  A  S  G  Q  P  A  T  A  T  T  G  G :   Y  K  L  V  V  A  A  S  D  P  K  K  I  A  S  P  T  I  T  N  I  Q  :  G  W  L  P  G  L  K  P  D  G  D  S  S  Q  L  P  T  I  A  I  V  A  S  Y  D  T  F  G  A  A  P :   H  C  Q  L  E  V  I  A  M  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13900" stop="13917"/>
                    <exon start="15200" stop="15303"/>
                    <exon start="15991" stop="16057"/>
                    <exon start="17184" stop="17275"/>
                    <exon start="17356" stop="17386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHANIPYPVYFAFEDDNINAVLAEVKRNDASGQPATATTGGYKLVVAASDPKKIASPTITNIQGWLPGLKPDGDSSQLPTIAIVASYDTFGAAPHCQLEVIAME</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="24445" PGL_stop="22462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24445" e_stop="23999"/>
            <exon e_start="23769" e_stop="23691"/>
            <exon e_start="23571" e_stop="23426"/>
            <exon e_start="23216" e_stop="23151"/>
            <exon e_start="23053" e_stop="22879"/>
            <exon e_start="22721" e_stop="22462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="0.998"/>
          <exon-intron don_prob="0.900" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.359" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="24445" e_stop="23999" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="23998" i_stop="23770" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23769" e_stop="23691" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.838">
            <gDNA_intron_boundary i_start="23690" i_stop="23572" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23571" e_stop="23426" e_length="146"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23425" i_stop="23217" i_length="209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23216" e_stop="23151" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.983">
            <gDNA_intron_boundary i_start="23150" i_stop="23054" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23053" e_stop="22879" e_length="175"/>
          </exon>
          <intron i_serial="5" don_prob="0.359" acc_prob="0.994">
            <gDNA_intron_boundary i_start="22878" i_stop="22722" i_length="157"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="22721" e_stop="22462" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24445" stop="23999"/>
              <exon start="23769" stop="23691"/>
              <exon start="23571" stop="23502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24007" stop="23999"/>
              <exon start="23769" stop="23691"/>
              <exon start="23571" stop="23426"/>
              <exon start="23216" stop="23151"/>
              <exon start="23053" stop="22879"/>
              <exon start="22721" stop="22462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATAGGTATGTCTGCATTAGTTCTTCCTTTGGTTTTTCAGTTCATCTTGTCTGCTTCATGAGAATCTAACTCAGTATGGCAATCCTTCCTCAAAAAAATAATCTAAGTAGACTTCCCTCTGATGCTTCATCAATTGTTTCCCGTGTTCCCTTGGCATCCAAGTCCTTAACCTAGAGAATATAAGAACGCTACTGTCTGTAAAGGCATCCATGTGTACGTTGTGCTGGCGTCACTTACATCATATCTACTAGGAGTGTTTTCAATGTTTGGGAGGTTGATATAAAATCTCATAATCATCACTATCTTTCTGCAAAACCTTTACCAATCCTCTCATTATTTATTTCTCAATGTGCTTCTTTGTAATAGGAGCGGGAAAGAGATCACTTCTCTCAGTTTATAACTGAAGGTTTCACTTCCTATTGCAAGAGAAAAAGGAGAGACAAA : GTTTATGGCAACAATGTGGAGATTCAAGCTTTATCTGAAATGTATAATCGCCCTATTCATATATATTCTTATAGCACAG : AACCAATCAATACATTCCACGGAAGTTATAATACAGACAGCCCTCCTGTTCGACTCAGTTTTCATCATGGAAATCATTACAATTCACTTGTTGATCCACGTCGACTAACTGTTGGTGCTGGCCTTGGGTTTAGCTCTCTACAAGGG : AGGAACGTTGATAAGGATCAGGTCAAAGCAGCAATAAAAGCTCAACAGGATCAGCAAATTGATAAT : GCTCTTCTGGCTGAAGGACGCTTTTATTCAGATCTTGAGCTCACTGAAAAGGAGATTGAACGCATGGTAGTGGAAGCTTCTAGGGCTGAGTATGTTGCCAATGACAAGTTCAGACAGCAGCTTGGTTGTCGAGAAACTTCCACTTCTAATGCTGAACCATCATCATCTGGAGCTA : GGTCGTCAGGAAGTGACACACATCAGGAAGGCATCCGAGAGGTCCTTAGCGACTGCATCCAGATTATGCTGTCGATGGGATTTAGCTATGCACGAGTGATAGAGGCTTATAGCATATTTGGGGATGATGTGGATTCCATGGTATGTTATCTCATCGAAACCAGCAATAGCAGCAGACGTAAAGGAAAAGCAACTGAATGATGAGATAATAGTTTCTTCTTTCTGTCTAGTACTAGTATGACTGTATCTTATCTCGCTGAA</gDNA_template>
            <first_frame> V  Y  R  Y  V  C  I  S  S  S  F  G  F  S  V  H  L  V  C  F  M  R  I  *  L  S  M  A  I  L  P  Q  K  N  N  L  S  R  L  P  S  D  A  S  S  I  V  S  R  V  P  L  A  S  K  S  L  T  *  R  I  *  E  R  Y  C  L  *  R  H  P  C  V  R  C  A  G  V  T  Y  I  I  S  T  R  S  V  F  N  V  W  E  V  D  I  K  S  H  N  H  H  Y  L  S  A  K  P  L  P  I  L  S  L  F  I  S  Q  C  A  S  L  *  *  E  R  E  R  D  H  F  S  Q  F  I  T  E  G  F  T  S  Y  C  K  R  K  R  R  D  K  :  V  Y  G  N  N  V  E  I  Q  A  L  S  E  M  Y  N  R  P  I  H  I  Y  S  Y  S  T   : E  P  I  N  T  F  H  G  S  Y  N  T  D  S  P  P  V  R  L  S  F  H  H  G  N  H  Y  N  S  L  V  D  P  R  R  L  T  V  G  A  G  L  G  F  S  S  L  Q  G  :  R  N  V  D  K  D  Q  V  K  A  A  I  K  A  Q  Q  D  Q  Q  I  D  N  :  A  L  L  A  E  G  R  F  Y  S  D  L  E  L  T  E  K  E  I  E  R  M  V  V  E  A  S  R  A  E  Y  V  A  N  D  K  F  R  Q  Q  L  G  C  R  E  T  S  T  S  N  A  E  P  S  S  S  G  A   : R  S  S  G  S  D  T  H  Q  E  G  I  R  E  V  L  S  D  C  I  Q  I  M  L  S  M  G  F  S  Y  A  R  V  I  E  A  Y  S  I  F  G  D  D  V  D  S  M  V  C  Y  L  I  E  T  S  N  S  S  R  R  K  G  K  A  T  E  *  *  D  N  S  F  F  F  L  S  S  T  S  M  T  V  S  Y  L  A  E </first_frame>
            <second_frame>  F  I  G  M  S  A  L  V  L  P  L  V  F  Q  F  I  L  S  A  S  *  E  S  N  S  V  W  Q  S  F  L  K  K  I  I  *  V  D  F  P  L  M  L  H  Q  L  F  P  V  F  P  W  H  P  S  P  *  P  R  E  Y  K  N  A  T  V  C  K  G  I  H  V  Y  V  V  L  A  S  L  T  S  Y  L  L  G  V  F  S  M  F  G  R  L  I  *  N  L  I  I  I  T  I  F  L  Q  N  L  Y  Q  S  S  H  Y  L  F  L  N  V  L  L  C  N  R  S  G  K  E  I  T  S  L  S  L  *  L  K  V  S  L  P  I  A  R  E  K  G  E  T  K :   F  M  A  T  M  W  R  F  K  L  Y  L  K  C  I  I  A  L  F  I  Y  I  L  I  A  Q  :  N  Q  S  I  H  S  T  E  V  I  I  Q  T  A  L  L  F  D  S  V  F  I  M  E  I  I  T  I  H  L  L  I  H  V  D  *  L  L  V  L  A  L  G  L  A  L  Y  K  G :   G  T  L  I  R  I  R  S  K  Q  Q  *  K  L  N  R  I  S  K  L  I  M :   L  F  W  L  K  D  A  F  I  Q  I  L  S  S  L  K  R  R  L  N  A  W  *  W  K  L  L  G  L  S  M  L  P  M  T  S  S  D  S  S  L  V  V  E  K  L  P  L  L  M  L  N  H  H  H  L  E  L  :  G  R  Q  E  V  T  H  I  R  K  A  S  E  R  S  L  A  T  A  S  R  L  C  C  R  W  D  L  A  M  H  E  *  *  R  L  I  A  Y  L  G  M  M  W  I  P  W  Y  V  I  S  S  K  P  A  I  A  A  D  V  K  E  K  Q  L  N  D  E  I  I  V  S  S  F  C  L  V  L  V  *  L  Y  L  I  S  L   </second_frame>
            <third_frame>   L  *  V  C  L  H  *  F  F  L  W  F  F  S  S  S  C  L  L  H  E  N  L  T  Q  Y  G  N  P  S  S  K  K  *  S  K  *  T  S  L  *  C  F  I  N  C  F  P  C  S  L  G  I  Q  V  L  N  L  E  N  I  R  T  L  L  S  V  K  A  S  M  C  T  L  C  W  R  H  L  H  H  I  Y  *  E  C  F  Q  C  L  G  G  *  Y  K  I  S  *  S  S  L  S  F  C  K  T  F  T  N  P  L  I  I  Y  F  S  M  C  F  F  V  I  G  A  G  K  R  S  L  L  S  V  Y  N  *  R  F  H  F  L  L  Q  E  K  K  E  R  Q   : S  L  W  Q  Q  C  G  D  S  S  F  I  *  N  V  *  S  P  Y  S  Y  I  F  L  *  H  R :   T  N  Q  Y  I  P  R  K  L  *  Y  R  Q  P  S  C  S  T  Q  F  S  S  W  K  S  L  Q  F  T  C  *  S  T  S  T  N  C  W  C  W  P  W  V  *  L  S  T  R   : E  E  R  *  *  G  S  G  Q  S  S  N  K  S  S  T  G  S  A  N  *  *   : C  S  S  G  *  R  T  L  L  F  R  S  *  A  H  *  K  G  D  *  T  H  G  S  G  S  F  *  G  *  V  C  C  Q  *  Q  V  Q  T  A  A  W  L  S  R  N  F  H  F  *  C  *  T  I  I  I  W  S  * :   V  V  R  K  *  H  T  S  G  R  H  P  R  G  P  *  R  L  H  P  D  Y  A  V  D  G  I  *  L  C  T  S  D  R  G  L  *  H  I  W  G  *  C  G  F  H  G  M  L  S  H  R  N  Q  Q  *  Q  Q  T  *  R  K  S  N  *  M  M  R  *  *  F  L  L  S  V  *  Y  *  Y  D  C  I  L  S  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24076" stop="23999"/>
                    <exon start="23769" stop="23691"/>
                    <exon start="23571" stop="23426"/>
                    <exon start="23216" stop="23151"/>
                    <exon start="23053" stop="22879"/>
                    <exon start="22721" stop="22522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQALSEMYNRPIHIYSYSTEPINTFHGSYNTDSPPVRLSFHHGNHYNSLVDPRRLTVGAGLGFSSLQGRNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERMVVEASRAEYVANDKFRQQLGCRETSTSNAEPSSSGARSSGSDTHQEGIREVLSDCIQIMLSMGFSYARVIEAYSIFGDDVDSMVCYLIETSNSSRRKGKATE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="28296" PGL_stop="26822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28296" e_stop="28101"/>
            <exon e_start="27638" e_stop="27498"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.954"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="28296" e_stop="28101" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="28100" i_stop="27639" i_length="462"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="27638" e_stop="27498" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28296" stop="28101"/>
              <exon start="27638" stop="27498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCTCTCTCTAGAAAAAACCCAGCTTTCTCTCTCTATACGTACACACGTATATATATCCATCTGCATACATATGTACATTTCTTCACCTAGAAGTTTATTTGTACCCATTTTCCCCATTTGTTCGGAATCTTCATGTAATAAACCCTAGCTAGCTTCTACTAGCAGGTTCTGGTTGCTGGTGATTCTAAAATCAA : TTTTGACTAGTGGAGGTGAACTTTGTATTTGGGGCTTTACTTTTGGGTAATTTCAAGTGGCATTAGGAAAAAAGGGGGTTTTCTTGTTTCAAAATAAGATTATTGGAGATCAAGGTCTCATGAGAATTTTTAGGGGAATGC</gDNA_template>
            <first_frame> C  L  S  L  E  K  T  Q  L  S  L  S  I  R  T  H  V  Y  I  S  I  C  I  H  M  Y  I  S  S  P  R  S  L  F  V  P  I  F  P  I  C  S  E  S  S  C  N  K  P  *  L  A  S  T  S  R  F  W  L  L  V  I  L  K  S   : I  L  T  S  G  G  E  L  C  I  W  G  F  T  F  G  *  F  Q  V  A  L  G  K  K  G  V  F  L  F  Q  N  K  I  I  G  D  Q  G  L  M  R  I  F  R  G  M  </first_frame>
            <second_frame>  V  S  L  *  K  K  P  S  F  L  S  L  Y  V  H  T  Y  I  Y  P  S  A  Y  I  C  T  F  L  H  L  E  V  Y  L  Y  P  F  S  P  F  V  R  N  L  H  V  I  N  P  S  *  L  L  L  A  G  S  G  C  W  *  F  *  N  Q  :  F  *  L  V  E  V  N  F  V  F  G  A  L  L  L  G  N  F  K  W  H  *  E  K  R  G  F  S  C  F  K  I  R  L  L  E  I  K  V  S  *  E  F  L  G  E  C </second_frame>
            <third_frame>   S  L  S  R  K  N  P  A  F  S  L  Y  T  Y  T  R  I  Y  I  H  L  H  T  Y  V  H  F  F  T  *  K  F  I  C  T  H  F  P  H  L  F  G  I  F  M  *  *  T  L  A  S  F  Y  *  Q  V  L  V  A  G  D  S  K  I  N :   F  D  *  W  R  *  T  L  Y  L  G  L  Y  F  W  V  I  S  S  G  I  R  K  K  G  G  F  L  V  S  K  *  D  Y  W  R  S  R  S  H  E  N  F  *  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28212" e_stop="28101"/>
            <exon e_start="27495" e_stop="26822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="28212" e_stop="28101" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28100" i_stop="27496" i_length="605"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="27495" e_stop="26822" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28212" stop="28101"/>
              <exon start="27495" stop="26822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCTAGAAGTTTATTTGTACCCATTTTCCCCATTTGTTCGGAATCTTCATGTAATAAACCCTAGCTAGCTTCTACTAGCAGGTTCTGGTTGCTGGTGATTCTAAAATCAA : AAATTAGTTCGTGAGTATAAGACAAAAGTTAGCTGCTGGGACAAATCGTTCAGCCAAGGTATTGGTGTGACTGCCCCAAAGGCCAGGAAGCGTGACAAATTCAAAGCAAGGGCTTTATTTCTCTAATTTCGGTTGAAGAAGACTACACAAAATGACTAGGATACTGGTTCAGCGCGGTTCTGCTGGAGCTTCATCGTCTTCATCCTCAAATCAAAACAGGTCATCAACTTCAATCCCTGGTTCGTCTTCTTCTTCAGCTCCAACCCAGCCACAGGCGTCTAGTAGTAGTCAGGTATTATCAGCTTTGAAAGATGATGATTTCGTGGAAGAAATACAAGAACAGGTTGCTTTAGAAGAGTCGTCCGTTGCTTCTTCAAACTATAAGGGTGACGGTGAATTGTTGGAAAGTTTGGGCAGCGAAGAAAGCAACAATGAAGAAAAGATTGTTGACAACGAGAAGAGAAATAGTGGTTTTGACAGTGAGGATTTGACAAGGAAATGTGATGGTTTAGGAGTCGTGGAAGAGGAAAATGAGGAAAGTTCCGTTCAGAGGCTTGCACGTAGTTCATGTCCACCTCCACCTCCTGTCCCGCCCCCGAAACCTGCTTCATTAAACTCAAGTCCTAGAAGATCTCTGACGGGCAGTTCACATGCTATCCGGATAGGATCATCTA</gDNA_template>
            <first_frame> S  P  R  S  L  F  V  P  I  F  P  I  C  S  E  S  S  C  N  K  P  *  L  A  S  T  S  R  F  W  L  L  V  I  L  K  S   : K  I  S  S  *  V  *  D  K  S  *  L  L  G  Q  I  V  Q  P  R  Y  W  C  D  C  P  K  G  Q  E  A  *  Q  I  Q  S  K  G  F  I  S  L  I  S  V  E  E  D  Y  T  K  *  L  G  Y  W  F  S  A  V  L  L  E  L  H  R  L  H  P  Q  I  K  T  G  H  Q  L  Q  S  L  V  R  L  L  L  Q  L  Q  P  S  H  R  R  L  V  V  V  R  Y  Y  Q  L  *  K  M  M  I  S  W  K  K  Y  K  N  R  L  L  *  K  S  R  P  L  L  L  Q  T  I  R  V  T  V  N  C  W  K  V  W  A  A  K  K  A  T  M  K  K  R  L  L  T  T  R  R  E  I  V  V  L  T  V  R  I  *  Q  G  N  V  M  V  *  E  S  W  K  R  K  M  R  K  V  P  F  R  G  L  H  V  V  H  V  H  L  H  L  L  S  R  P  R  N  L  L  H  *  T  Q  V  L  E  D  L  *  R  A  V  H  M  L  S  G  *  D  H  L </first_frame>
            <second_frame>  H  L  E  V  Y  L  Y  P  F  S  P  F  V  R  N  L  H  V  I  N  P  S  *  L  L  L  A  G  S  G  C  W  *  F  *  N  Q  :  K  L  V  R  E  Y  K  T  K  V  S  C  W  D  K  S  F  S  Q  G  I  G  V  T  A  P  K  A  R  K  R  D  K  F  K  A  R  A  L  F  L  *  F  R  L  K  K  T  T  Q  N  D  *  D  T  G  S  A  R  F  C  W  S  F  I  V  F  I  L  K  S  K  Q  V  I  N  F  N  P  W  F  V  F  F  F  S  S  N  P  A  T  G  V  *  *  *  S  G  I  I  S  F  E  R  *  *  F  R  G  R  N  T  R  T  G  C  F  R  R  V  V  R  C  F  F  K  L  *  G  *  R  *  I  V  G  K  F  G  Q  R  R  K  Q  Q  *  R  K  D  C  *  Q  R  E  E  K  *  W  F  *  Q  *  G  F  D  K  E  M  *  W  F  R  S  R  G  R  G  K  *  G  K  F  R  S  E  A  C  T  *  F  M  S  T  S  T  S  C  P  A  P  E  T  C  F  I  K  L  K  S  *  K  I  S  D  G  Q  F  T  C  Y  P  D  R  I  I   </second_frame>
            <third_frame>   T  *  K  F  I  C  T  H  F  P  H  L  F  G  I  F  M  *  *  T  L  A  S  F  Y  *  Q  V  L  V  A  G  D  S  K  I  K :   N  *  F  V  S  I  R  Q  K  L  A  A  G  T  N  R  S  A  K  V  L  V  *  L  P  Q  R  P  G  S  V  T  N  S  K  Q  G  L  Y  F  S  N  F  G  *  R  R  L  H  K  M  T  R  I  L  V  Q  R  G  S  A  G  A  S  S  S  S  S  S  N  Q  N  R  S  S  T  S  I  P  G  S  S  S  S  S  A  P  T  Q  P  Q  A  S  S  S  S  Q  V  L  S  A  L  K  D  D  D  F  V  E  E  I  Q  E  Q  V  A  L  E  E  S  S  V  A  S  S  N  Y  K  G  D  G  E  L  L  E  S  L  G  S  E  E  S  N  N  E  E  K  I  V  D  N  E  K  R  N  S  G  F  D  S  E  D  L  T  R  K  C  D  G  L  G  V  V  E  E  E  N  E  E  S  S  V  Q  R  L  A  R  S  S  C  P  P  P  P  P  V  P  P  P  K  P  A  S  L  N  S  S  P  R  R  S  L  T  G  S  S  H  A  I  R  I  G  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27359" stop="26823"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLHKMTRILVQRGSAGASSSSSSNQNRSSTSIPGSSSSSAPTQPQASSSSQVLSALKDDDFVEEIQEQVALEESSVASSNYKGDGELLESLGSEESNNEEKIVDNEKRNSGFDSEDLTRKCDGLGVVEEENEESSVQRLARSSCPPPPPVPPPKPASLNSSPRRSLTGSSHAIRIGSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38963" PGL_stop="29183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38963" e_stop="38644"/>
            <exon e_start="37607" e_stop="37378"/>
            <exon e_start="35027" e_stop="34931"/>
            <exon e_start="32680" e_stop="32531"/>
            <exon e_start="32420" e_stop="32294"/>
            <exon e_start="31565" e_stop="31453"/>
            <exon e_start="31362" e_stop="31299"/>
            <exon e_start="31210" e_stop="31117"/>
            <exon e_start="31024" e_stop="30916"/>
            <exon e_start="29619" e_stop="29183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.240" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38963" e_stop="38644" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37607" e_stop="37378" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35027" e_stop="34931" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.968">
            <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32680" e_stop="32531" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.975">
            <gDNA_intron_boundary i_start="32530" i_stop="32421" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32420" e_stop="32294" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31565" e_stop="31453" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31362" e_stop="31299" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.240" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31210" e_stop="31117" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31024" e_stop="30916" e_length="109"/>
          </exon>
          <intron i_serial="9" don_prob="0.735" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="29619" e_stop="29183" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38963" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38958" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="35000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38923" stop="38644"/>
              <exon start="37607" stop="37499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38919" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38901" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38894" stop="38644"/>
              <exon start="37607" stop="37416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38760" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38673" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32531"/>
              <exon start="32420" stop="32294"/>
              <exon start="31565" stop="31519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38673" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32395" stop="32294"/>
              <exon start="31565" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="31009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32337" stop="32294"/>
              <exon start="31565" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31456" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31326" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31326" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29612" stop="29220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358575" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT : CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA : GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG : ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTT : GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA : GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG : CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG : AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG : GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT : ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATATATATTAT</gDNA_template>
            <first_frame> K  N  Q  L  F  F  V  F  F  W  P  L  R  L  S  K  A  I  I  S  C  L  K  *  N  R  S  S  T  I  L  G  F  D  I  V  F  F  Q  F  Q  Y  K  *  S  R  Y  G  Y  R  N  L  H  Q  V  H  E  E  S  A  V  C  R  I  Y  L  K  V  E  F  M  V  *  L  G  E  L  L  S  S  V  M  V  F  L  L  R  R  I  K  V  L  V  *  F  K  H  S  A  S  L  I  S  T  L  Y  I :   G  L  L  D  Q  E  E  E  *  M  S  G  Y  T  G  F  L  Y  H  Y  T  K  R  C  I  T  S  *  A  R  Y  V  G  F  Y  *  E  E  G  L  E  N  *  E  L  C  L  W  K  M  V  A  M  *  A  C  H  L  F  W  K  L  T  *  R  V  L  L  E  W  L  A  R  H  L  R   : R  M  V  H  C  W  *  L  H  L  E  E  I  R  S  Q  *  L  A  P  L  K  D  W  H  L  I  M  F  L  L  S  R :   F  S  I  Q  G  P  V  W  T  G  S  T  W  *  S  P  P  S  M  T  I  T  L  *  L  L  K  E  R  N  K  F  L  V  F  C  K  S  G  *  H  P  K  N  H  L  I  S  M  L :   Y  L  R  *  E  L  Y  I  K  L  I  L  L  L  L  E  L  Q  L  P  P  G  M  K  S  L  H  L  C  R  S  P  Y  W  W  S  T  L  E  A  L  Q  :  D  T  A  G  M  G  Q  T  L  *  S  N  *  Q  P  P  F  T  M  F  L  G  A  V  G  A  *  E  S  R  S  P  E  G  H  Q  K  S :   I  P  K  S  W  S  K  S  L  V  W  I  Q  K  Y  T  F  G  M  V  K  :  S  Q  I  H  T  W  G  I  W  L  G  L  M  F  L  L  S  Q  Q  I  Q  L  A  C  *  V  R  L  A  V  L   : G  S  L  C  M  *  L  E  P  N  A  V  H  G  S  S  Q  S  S  T  R  H  L  E  R  E  D  *  L  G  H  S  L  D  L  R  I :   C  R  K  A  G  V  T  L  R  L  M  I  P  Q  L  Q  L  A  V  *  M  K  L  L  L  R  K  D  G  R  L  K  H  K  K  S  F  W  S  N  I  V  V  V  T  N  F  T  S  L  F  T  F  M  M  C  S  E  F  L  V  H  V  L  *  L  I  *  F  Y  R  R  K  E  K  K  R  Y  P  V  K  I  R  V  E  Q  *  G  S  Y  S  F  L  T  H  *  G  G  F  P  L  I  Y  *  Q  K  *  M  S  I  F  I  C  K  V  E  A  F  A  C  S  T  K  D  K  K  K  L  T  S  L  N  L  I  M  L  C  W  I  F  *  I  Y  I  L  </first_frame>
            <second_frame>  K  I  N  S  F  L  Y  S  F  G  L  C  G  Y  L  K  P  S  S  V  V  *  S  E  I  D  L  L  Q  F  *  G  L  I  L  F  F  F  N  F  S  I  N  E  A  D  T  V  T  G  T  S  I  K  S  T  R  N  R  R  C  A  G  Y  I  *  R  W  S  S  W  C  D  *  A  S  C  C  H  R  *  W  F  S  C  F  G  E  S  K  Y  W  S  D  S  S  T  R  P  L  *  *  A  H  S  I   : S  G  Y  *  T  K  R  R  S  E  *  V  A  T  L  A  S  C  I  I  T  Q  N  G  V  L  H  H  K  P  D  M  W  D  S  I  E  K  K  D  *  K  T  R  N  F  A  Y  G  K  W  W  Q  C  R  L  V  I  Y  F  G  S  *  R  E  E  Y  C  *  N  G  S  R  D  I  *  E  :  G  W  S  I  A  G  D  C  I  W  K  R  Y  D  L  N  N  *  L  H  *  K  I  G  I  *  *  C  F  C  C  P   : D  S  A  S  K  V  P  F  G  Q  V  R  H  G  N  H  P  Q  A  *  L  L  L  F  N  S  S  R  K  G  T  S  S  S  F  S  A  K  V  D  N  T  P  R  T  T  *  *  A  C   : C  T  Y  G  R  S  S  T  S  S  *  F  C  C  S  *  S  C  S  C  H  L  A  *  R  V  C  T  F  A  E  A  L  I  G  G  Q  H  W  R  P  Y  K :   I  L  Q  V  W  G  R  P  C  K  A  I  N  S  L  P  S  Q  C  S  W  E  L  W  E  H  K  N  L  V  L  Q  K  D  T  R  K   : A  F  Q  N  R  G  Q  R  A  W  F  G  S  K  S  T  H  L  E  W  *  R :   A  K  S  T  H  G  A  S  G  L  G  *  C  F  C  Y  H  S  R  F  S  *  H  V  E  *  G  L  Q  Y  W  :  E  A  C  V  C  S  W  S  R  T  L  Y  M  E  V  H  R  V  P  Q  D  T  *  R  E  R  T  D  *  A  I  H  W  T  *  G   : Y  V  G  K  L  E  L  P  S  A  *  *  Y  R  S  C  S  *  P  C  E  *  S  S  C  *  E  R  M  E  D  *  S  I  K  N  P  F  G  L  I  L  L  L  L  Q  I  L  L  L  Y  L  H  L  *  C  V  Q  S  S  *  S  M  Y  Y  D  *  F  N  F  T  G  G  K  K  R  R  D  I  Q  L  K  S  E  L  N  N  E  A  L  I  L  F  *  L  I  E  G  V  F  H  L  Y  I  D  K  N  K  C  Q  S  S  Y  V  K  *  K  H  L  L  A  Q  P  K  I  K  K  N  *  Q  V  *  I  *  L  C  F  V  G  F  F  K  Y  I  Y  Y </second_frame>
            <third_frame>   K  S  T  L  F  C  I  L  L  A  F  A  V  I  *  S  H  H  Q  L  F  E  V  K  S  I  F  Y  N  S  R  V  *  Y  C  F  F  S  I  S  V  *  M  K  P  I  R  L  P  E  P  P  S  S  P  R  G  I  G  G  V  P  D  I  F  E  G  G  V  H  G  V  I  R  R  A  V  V  I  G  N  G  F  P  A  S  E  N  Q  S  I  G  L  I  Q  A  L  G  L  S  D  K  H  T  L  Y  :  R  V  T  R  P  R  G  G  V  N  E  W  L  H  W  L  P  V  S  L  H  K  T  V  Y  Y  I  I  S  Q  I  C  G  I  L  L  R  R  R  T  R  K  L  G  T  L  P  M  E  N  G  G  N  V  G  L  S  S  I  L  E  A  D  V  K  S  I  V  R  M  A  R  E  T  F  E  K :   D  G  P  L  L  V  I  A  S  G  R  D  T  I  S  I  T  S  S  I  K  R  L  A  S  D  N  V  F  V  V  Q  :  I  Q  H  P  R  S  R  L  D  R  F  D  M  V  I  T  P  K  H  D  Y  Y  S  L  T  P  Q  G  K  E  Q  V  P  R  F  L  Q  K  W  I  T  P  Q  E  P  P  D  K  H  V  :  V  L  T  V  G  A  L  H  Q  V  D  F  A  A  L  R  A  A  A  A  T  W  H  E  E  F  A  P  L  P  K  P  L  L  V  V  N  I  G  G  P  T   : R  Y  C  R  Y  G  A  D  L  V  K  Q  L  T  A  S  L  H  N  V  L  G  S  C  G  S  I  R  I  S  F  S  R  R  T  P  E  K  :  H  S  K  I  V  V  K  E  L  G  L  D  P  K  V  H  I  W  N  G  E   : E  P  N  P  H  M  G  H  L  A  W  A  D  V  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G :   K  P  V  Y  V  V  G  A  E  R  C  T  W  K  F  T  E  F  H  K  T  L  R  E  R  G  L  T  R  P  F  T  G  L  E  D  :  M  S  E  S  W  S  Y  P  P  L  N  D  T  A  V  A  A  S  R  V  N  E  A  L  A  E  K  G  W  K  I  K  A  *  K  I  L  L  V  *  Y  C  C  C  Y  K  F  Y  F  S  I  Y  I  Y  D  V  F  R  V  L  S  P  C  I  M  I  D  L  I  L  Q  E  E  R  K  E  E  I  S  S  *  N  Q  S  *  T  M  R  L  L  F  F  F  N  S  L  R  G  F  S  T  Y  I  L  T  K  I  N  V  N  L  H  M  *  S  R  S  I  C  L  L  N  Q  R  *  K  K  I  N  K  F  K  S  N  Y  A  L  L  D  F  L  N  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38835" stop="38644"/>
                    <exon start="37607" stop="37378"/>
                    <exon start="35027" stop="34931"/>
                    <exon start="32680" stop="32531"/>
                    <exon start="32420" stop="32294"/>
                    <exon start="31565" stop="31453"/>
                    <exon start="31362" stop="31299"/>
                    <exon start="31210" stop="31117"/>
                    <exon start="31024" stop="30916"/>
                    <exon start="29619" stop="29518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKPIRLPEPPSSPRGIGGVPDIFEGGVHGVIRRAVVIGNGFPASENQSIGLIQALGLSDKHTLYRVTRPRGGVNEWLHWLPVSLHKTVYYIISQICGILLRRRTRKLGTLPMENGGNVGLSSILEADVKSIVRMARETFEKDGPLLVIASGRDTISITSSIKRLASDNVFVVQIQHPRSRLDRFDMVITPKHDYYSLTPQGKEQVPRFLQKWITPQEPPDKHVVLTVGALHQVDFAALRAAAATWHEEFAPLPKPLLVVNIGGPTRYCRYGADLVKQLTASLHNVLGSCGSIRISFSRRTPEKHSKIVVKELGLDPKVHIWNGEEPNPHMGHLAWADVFVITADSVSMLSEACSTGKPVYVVGAERCTWKFTEFHKTLRERGLTRPFTGLEDMSESWSYPPLNDTAVAASRVNEALAEKGWKIKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38963" e_stop="38644"/>
            <exon e_start="37607" e_stop="37378"/>
            <exon e_start="35027" e_stop="34931"/>
            <exon e_start="32680" e_stop="32527"/>
            <exon e_start="32420" e_stop="32294"/>
            <exon e_start="31565" e_stop="31453"/>
            <exon e_start="31362" e_stop="31299"/>
            <exon e_start="31210" e_stop="31117"/>
            <exon e_start="31024" e_stop="30916"/>
            <exon e_start="29619" e_stop="29183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.240" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38963" e_stop="38644" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38643" i_stop="37608" i_length="1036"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37607" e_stop="37378" e_length="230"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37377" i_stop="35028" i_length="2350"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35027" e_stop="34931" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.968">
            <gDNA_intron_boundary i_start="34930" i_stop="32681" i_length="2250"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32680" e_stop="32527" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.975" acc_prob="0.975">
            <gDNA_intron_boundary i_start="32526" i_stop="32421" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32420" e_stop="32294" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.969">
            <gDNA_intron_boundary i_start="32293" i_stop="31566" i_length="728"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31565" e_stop="31453" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="31452" i_stop="31363" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31362" e_stop="31299" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.240" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31298" i_stop="31211" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31210" e_stop="31117" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="31116" i_stop="31025" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="31024" e_stop="30916" e_length="109"/>
          </exon>
          <intron i_serial="9" don_prob="0.735" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30915" i_stop="29620" i_length="1296"/>
          </intron>
          <exon e_serial="10" e_score="0.989">
            <gDNA_exon_boundary e_start="29619" e_stop="29183" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38963" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38958" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="35000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38923" stop="38644"/>
              <exon start="37607" stop="37499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38921" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32527"/>
              <exon start="32420" stop="32358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38919" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38901" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38894" stop="38644"/>
              <exon start="37607" stop="37416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38760" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38673" stop="38644"/>
              <exon start="37607" stop="37378"/>
              <exon start="35027" stop="34931"/>
              <exon start="32680" stop="32607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32395" stop="32294"/>
              <exon start="31565" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="31009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32337" stop="32294"/>
              <exon start="31565" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31456" stop="31453"/>
              <exon start="31362" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31326" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31326" stop="31299"/>
              <exon start="31210" stop="31117"/>
              <exon start="31024" stop="30916"/>
              <exon start="29619" stop="29331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29612" stop="29220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358575" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATCAACTCTTTTTTGTATTCTTTTGGCCTTTGCGGTTATCTAAAGCCATCATCAGTTGTTTGAAGTGAAATCGATCTTCTACAATTCTAGGGTTTGATATTGTTTTTTTTCAATTTCAGTATAAATGAAGCCGATACGGTTACCGGAACCTCCATCAAGTCCACGAGGAATCGGCGGTGTGCCGGATATATTTGAAGGTGGAGTTCATGGTGTGATTAGGCGAGCTGTTGTCATCGGTAATGGTTTTCCTGCTTCGGAGAATCAAAGTATTGGTCTGATTCAAGCACTCGGCCTCTCTGATAAGCACACTCTATAT : CGGGTTACTAGACCAAGAGGAGGAGTGAATGAGTGGCTACACTGGCTTCCTGTATCATTACACAAAACGGTGTATTACATCATAAGCCAGATATGTGGGATTCTATTGAGAAGAAGGACTAGAAAACTAGGAACTTTGCCTATGGAAAATGGTGGCAATGTAGGCTTGTCATCTATTTTGGAAGCTGACGTGAAGAGTATTGTTAGAATGGCTCGCGAGACATTTGAGAA : GGATGGTCCATTGCTGGTGATTGCATCTGGAAGAGATACGATCTCAATAACTAGCTCCATTAAAAGATTGGCATCTGATAATGTTTTTGTTGTCCAG : ATTCAGCATCCAAGGTCCCGTTTGGACAGGTTCGACATGGTAATCACCCCCAAGCATGACTATTACTCTTTAACTCCTCAAGGAAAGGAACAAGTTCCTCGTTTTCTGCAAAAGTGGATAACACCCCAAGAACCACCTGATAAGCATGTTGTAG : GTACTTACGGTAGGAGCTCTACATCAAGTTGATTTTGCTGCTCTTAGAGCTGCAGCTGCCACCTGGCATGAAGAGTTTGCACCTTTGCCGAAGCCCTTATTGGTGGTCAACATTGGAGGCCCTACAA : GATACTGCAGGTATGGGGCAGACCTTGTAAAGCAATTAACAGCCTCCCTTCACAATGTTCTTGGGAGCTGTGGGAGCATAAGAATCTCGTTCTCCAGAAGGACACCAGAAAAG : CATTCCAAAATCGTGGTCAAAGAGCTTGGTTTGGATCCAAAAGTACACATTTGGAATGGTGAAG : AGCCAAATCCACACATGGGGCATCTGGCTTGGGCTGATGTTTTTGTTATCACAGCAGATTCAGTTAGCATGTTGAGTGAGGCTTGCAGTACTGG : GAAGCCTGTGTATGTAGTTGGAGCCGAACGCTGTACATGGAAGTTCACAGAGTTCCACAAGACACTTAGAGAGAGAGGACTGACTAGGCCATTCACTGGACTTGAGGAT : ATGTCGGAAAGCTGGAGTTACCCTCCGCTTAATGATACCGCAGTTGCAGCTAGCCGTGTGAATGAAGCTCTTGCTGAGAAAGGATGGAAGATTAAAGCATAAAAAATCCTTTTGGTCTAATATTGTTGTTGTTACAAATTTTACTTCTCTATTTACATTTATGATGTGTTCAGAGTTCTTAGTCCATGTATTATGATTGATTTAATTTTACAGGAGGAAAGAAAAGAAGAGATATCCAGTTAAAATCAGAGTTGAACAATGAGGCTCTTATTCTTTTTTAACTCATTGAGGGGGTTTTCCACTTATATATTGACAAAAATAAATGTCAATCTTCATATGTAAAGTAGAAGCATTTGCTTGCTCAACCAAAGATAAAAAAAAATTAACAAGTTTAAATCTAATTATGCTTTGTTGGATTTTTTAAATATATATATTAT</gDNA_template>
            <first_frame> K  N  Q  L  F  F  V  F  F  W  P  L  R  L  S  K  A  I  I  S  C  L  K  *  N  R  S  S  T  I  L  G  F  D  I  V  F  F  Q  F  Q  Y  K  *  S  R  Y  G  Y  R  N  L  H  Q  V  H  E  E  S  A  V  C  R  I  Y  L  K  V  E  F  M  V  *  L  G  E  L  L  S  S  V  M  V  F  L  L  R  R  I  K  V  L  V  *  F  K  H  S  A  S  L  I  S  T  L  Y  I :   G  L  L  D  Q  E  E  E  *  M  S  G  Y  T  G  F  L  Y  H  Y  T  K  R  C  I  T  S  *  A  R  Y  V  G  F  Y  *  E  E  G  L  E  N  *  E  L  C  L  W  K  M  V  A  M  *  A  C  H  L  F  W  K  L  T  *  R  V  L  L  E  W  L  A  R  H  L  R   : R  M  V  H  C  W  *  L  H  L  E  E  I  R  S  Q  *  L  A  P  L  K  D  W  H  L  I  M  F  L  L  S  R :   F  S  I  Q  G  P  V  W  T  G  S  T  W  *  S  P  P  S  M  T  I  T  L  *  L  L  K  E  R  N  K  F  L  V  F  C  K  S  G  *  H  P  K  N  H  L  I  S  M  L  *  :  V  L  T  V  G  A  L  H  Q  V  D  F  A  A  L  R  A  A  A  A  T  W  H  E  E  F  A  P  L  P  K  P  L  L  V  V  N  I  G  G  P  T   : R  Y  C  R  Y  G  A  D  L  V  K  Q  L  T  A  S  L  H  N  V  L  G  S  C  G  S  I  R  I  S  F  S  R  R  T  P  E  K  :  H  S  K  I  V  V  K  E  L  G  L  D  P  K  V  H  I  W  N  G  E   : E  P  N  P  H  M  G  H  L  A  W  A  D  V  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G :   K  P  V  Y  V  V  G  A  E  R  C  T  W  K  F  T  E  F  H  K  T  L  R  E  R  G  L  T  R  P  F  T  G  L  E  D  :  M  S  E  S  W  S  Y  P  P  L  N  D  T  A  V  A  A  S  R  V  N  E  A  L  A  E  K  G  W  K  I  K  A  *  K  I  L  L  V  *  Y  C  C  C  Y  K  F  Y  F  S  I  Y  I  Y  D  V  F  R  V  L  S  P  C  I  M  I  D  L  I  L  Q  E  E  R  K  E  E  I  S  S  *  N  Q  S  *  T  M  R  L  L  F  F  F  N  S  L  R  G  F  S  T  Y  I  L  T  K  I  N  V  N  L  H  M  *  S  R  S  I  C  L  L  N  Q  R  *  K  K  I  N  K  F  K  S  N  Y  A  L  L  D  F  L  N  I  Y  I   </first_frame>
            <second_frame>  K  I  N  S  F  L  Y  S  F  G  L  C  G  Y  L  K  P  S  S  V  V  *  S  E  I  D  L  L  Q  F  *  G  L  I  L  F  F  F  N  F  S  I  N  E  A  D  T  V  T  G  T  S  I  K  S  T  R  N  R  R  C  A  G  Y  I  *  R  W  S  S  W  C  D  *  A  S  C  C  H  R  *  W  F  S  C  F  G  E  S  K  Y  W  S  D  S  S  T  R  P  L  *  *  A  H  S  I   : S  G  Y  *  T  K  R  R  S  E  *  V  A  T  L  A  S  C  I  I  T  Q  N  G  V  L  H  H  K  P  D  M  W  D  S  I  E  K  K  D  *  K  T  R  N  F  A  Y  G  K  W  W  Q  C  R  L  V  I  Y  F  G  S  *  R  E  E  Y  C  *  N  G  S  R  D  I  *  E  :  G  W  S  I  A  G  D  C  I  W  K  R  Y  D  L  N  N  *  L  H  *  K  I  G  I  *  *  C  F  C  C  P   : D  S  A  S  K  V  P  F  G  Q  V  R  H  G  N  H  P  Q  A  *  L  L  L  F  N  S  S  R  K  G  T  S  S  S  F  S  A  K  V  D  N  T  P  R  T  T  *  *  A  C  C  R :   Y  L  R  *  E  L  Y  I  K  L  I  L  L  L  L  E  L  Q  L  P  P  G  M  K  S  L  H  L  C  R  S  P  Y  W  W  S  T  L  E  A  L  Q  :  D  T  A  G  M  G  Q  T  L  *  S  N  *  Q  P  P  F  T  M  F  L  G  A  V  G  A  *  E  S  R  S  P  E  G  H  Q  K  S :   I  P  K  S  W  S  K  S  L  V  W  I  Q  K  Y  T  F  G  M  V  K  :  S  Q  I  H  T  W  G  I  W  L  G  L  M  F  L  L  S  Q  Q  I  Q  L  A  C  *  V  R  L  A  V  L   : G  S  L  C  M  *  L  E  P  N  A  V  H  G  S  S  Q  S  S  T  R  H  L  E  R  E  D  *  L  G  H  S  L  D  L  R  I :   C  R  K  A  G  V  T  L  R  L  M  I  P  Q  L  Q  L  A  V  *  M  K  L  L  L  R  K  D  G  R  L  K  H  K  K  S  F  W  S  N  I  V  V  V  T  N  F  T  S  L  F  T  F  M  M  C  S  E  F  L  V  H  V  L  *  L  I  *  F  Y  R  R  K  E  K  K  R  Y  P  V  K  I  R  V  E  Q  *  G  S  Y  S  F  L  T  H  *  G  G  F  P  L  I  Y  *  Q  K  *  M  S  I  F  I  C  K  V  E  A  F  A  C  S  T  K  D  K  K  K  L  T  S  L  N  L  I  M  L  C  W  I  F  *  I  Y  I  L  </second_frame>
            <third_frame>   K  S  T  L  F  C  I  L  L  A  F  A  V  I  *  S  H  H  Q  L  F  E  V  K  S  I  F  Y  N  S  R  V  *  Y  C  F  F  S  I  S  V  *  M  K  P  I  R  L  P  E  P  P  S  S  P  R  G  I  G  G  V  P  D  I  F  E  G  G  V  H  G  V  I  R  R  A  V  V  I  G  N  G  F  P  A  S  E  N  Q  S  I  G  L  I  Q  A  L  G  L  S  D  K  H  T  L  Y  :  R  V  T  R  P  R  G  G  V  N  E  W  L  H  W  L  P  V  S  L  H  K  T  V  Y  Y  I  I  S  Q  I  C  G  I  L  L  R  R  R  T  R  K  L  G  T  L  P  M  E  N  G  G  N  V  G  L  S  S  I  L  E  A  D  V  K  S  I  V  R  M  A  R  E  T  F  E  K :   D  G  P  L  L  V  I  A  S  G  R  D  T  I  S  I  T  S  S  I  K  R  L  A  S  D  N  V  F  V  V  Q  :  I  Q  H  P  R  S  R  L  D  R  F  D  M  V  I  T  P  K  H  D  Y  Y  S  L  T  P  Q  G  K  E  Q  V  P  R  F  L  Q  K  W  I  T  P  Q  E  P  P  D  K  H  V  V   : G  T  Y  G  R  S  S  T  S  S  *  F  C  C  S  *  S  C  S  C  H  L  A  *  R  V  C  T  F  A  E  A  L  I  G  G  Q  H  W  R  P  Y  K :   I  L  Q  V  W  G  R  P  C  K  A  I  N  S  L  P  S  Q  C  S  W  E  L  W  E  H  K  N  L  V  L  Q  K  D  T  R  K   : A  F  Q  N  R  G  Q  R  A  W  F  G  S  K  S  T  H  L  E  W  *  R :   A  K  S  T  H  G  A  S  G  L  G  *  C  F  C  Y  H  S  R  F  S  *  H  V  E  *  G  L  Q  Y  W  :  E  A  C  V  C  S  W  S  R  T  L  Y  M  E  V  H  R  V  P  Q  D  T  *  R  E  R  T  D  *  A  I  H  W  T  *  G   : Y  V  G  K  L  E  L  P  S  A  *  *  Y  R  S  C  S  *  P  C  E  *  S  S  C  *  E  R  M  E  D  *  S  I  K  N  P  F  G  L  I  L  L  L  L  Q  I  L  L  L  Y  L  H  L  *  C  V  Q  S  S  *  S  M  Y  Y  D  *  F  N  F  T  G  G  K  K  R  R  D  I  Q  L  K  S  E  L  N  N  E  A  L  I  L  F  *  L  I  E  G  V  F  H  L  Y  I  D  K  N  K  C  Q  S  S  Y  V  K  *  K  H  L  L  A  Q  P  K  I  K  K  N  *  Q  V  *  I  *  L  C  F  V  G  F  F  K  Y  I  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38835" stop="38644"/>
                    <exon start="37607" stop="37378"/>
                    <exon start="35027" stop="34931"/>
                    <exon start="32680" stop="32527"/>
                    <exon start="32420" stop="32389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKPIRLPEPPSSPRGIGGVPDIFEGGVHGVIRRAVVIGNGFPASENQSIGLIQALGLSDKHTLYRVTRPRGGVNEWLHWLPVSLHKTVYYIISQICGILLRRRTRKLGTLPMENGGNVGLSSILEADVKSIVRMARETFEKDGPLLVIASGRDTISITSSIKRLASDNVFVVQIQHPRSRLDRFDMVITPKHDYYSLTPQGKEQVPRFLQKWITPQEPPDKHVVGTYGRSSTSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32420" stop="32294"/>
                    <exon start="31565" stop="31453"/>
                    <exon start="31362" stop="31299"/>
                    <exon start="31210" stop="31117"/>
                    <exon start="31024" stop="30916"/>
                    <exon start="29619" stop="29518"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLTVGALHQVDFAALRAAAATWHEEFAPLPKPLLVVNIGGPTRYCRYGADLVKQLTASLHNVLGSCGSIRISFSRRTPEKHSKIVVKELGLDPKVHIWNGEEPNPHMGHLAWADVFVITADSVSMLSEACSTGKPVYVVGAERCTWKFTEFHKTLRERGLTRPFTGLEDMSESWSYPPLNDTAVAASRVNEALAEKGWKIKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40051" PGL_stop="40284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40051" e_stop="40284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40051" e_stop="40284" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40051" stop="40284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAACTCACAGTTGAGTGACCTTTCCTCCATTAGAGCTCCGAAGCAGCATCCTACTACTACTGGTGTGATTTTGCTTCAGAGCAAAACATACTAATCTCTACTGTTTCGCTCACTTCCACGGCTACAAATGGATATACTTTTCGCTCAGATCCAAGCCGATCTCCGTTCAAATGACGCACTCCGTCAATCAGGAGCTCTTTTACAAGCTCTACAACAATCCGCAGCCGGAAGA</gDNA_template>
            <first_frame> G  N  S  Q  L  S  D  L  S  S  I  R  A  P  K  Q  H  P  T  T  T  G  V  I  L  L  Q  S  K  T  Y  *  S  L  L  F  R  S  L  P  R  L  Q  M  D  I  L  F  A  Q  I  Q  A  D  L  R  S  N  D  A  L  R  Q  S  G  A  L  L  Q  A  L  Q  Q  S  A  A  G  R </first_frame>
            <second_frame>  A  T  H  S  *  V  T  F  P  P  L  E  L  R  S  S  I  L  L  L  L  V  *  F  C  F  R  A  K  H  T  N  L  Y  C  F  A  H  F  H  G  Y  K  W  I  Y  F  S  L  R  S  K  P  I  S  V  Q  M  T  H  S  V  N  Q  E  L  F  Y  K  L  Y  N  N  P  Q  P  E   </second_frame>
            <third_frame>   Q  L  T  V  E  *  P  F  L  H  *  S  S  E  A  A  S  Y  Y  Y  W  C  D  F  A  S  E  Q  N  I  L  I  S  T  V  S  L  T  S  T  A  T  N  G  Y  T  F  R  S  D  P  S  R  S  P  F  K  *  R  T  P  S  I  R  S  S  F  T  S  S  T  T  I  R  S  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43815" PGL_stop="46416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43815" e_stop="43950"/>
            <exon e_start="44427" e_stop="44730"/>
            <exon e_start="46331" e_stop="46416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43815" e_stop="43950" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="43951" i_stop="44426" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44427" e_stop="44730" e_length="304"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.961">
            <gDNA_intron_boundary i_start="44731" i_stop="46330" i_length="1600"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46331" e_stop="46416" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43815" stop="43950"/>
              <exon start="44427" stop="44730"/>
              <exon start="46331" stop="46416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCCAGGGCAGGGCAATTGCTAATAAAAGAACTTGAAGAGTTTAGGACCAATGCATTAGCTGACTCAGTGAACAAACATCAGTGTCGGTTAATACTGCAGAGGATCAAATATGTCACCAACCACTCGGAAAGCAA : GTGGGCTGGGGTTGGTGAAGCAAGAGGAGATTATCCATTTAGCCATCACAAGTTAACAGTTCAGTTTTATGACGCATCTGCTGCTCAGGACCGAAAACTGGAAGGATTGGTGCACAAGGCTATTTTAGAGCTTTGGAGGCCTGATCCTAGTGAGCTAGCTCTATTGCTGGCTAAACGAGTAGATTCTACTTTACTCAAGGTTCCTCCTAGTGCATATACTTTGACTGGCAGCAGTGATCCTTGTTATGTTGAAGCATATCATTTGACTGATCCAAGTGATGGAAGATTTACTCTGCACTTAAAG : GTTTTGAATTTGACCGAGATAGAACTTAACCGGGTGGATTTAAGAGTTGGACTTTCTGGTGGATTGTATTTCATGGATGGATCTCC</gDNA_template>
            <first_frame> I  P  G  Q  G  N  C  *  *  K  N  L  K  S  L  G  P  M  H  *  L  T  Q  *  T  N  I  S  V  G  *  Y  C  R  G  S  N  M  S  P  T  T  R  K  A   : S  G  L  G  L  V  K  Q  E  E  I  I  H  L  A  I  T  S  *  Q  F  S  F  M  T  H  L  L  L  R  T  E  N  W  K  D  W  C  T  R  L  F  *  S  F  G  G  L  I  L  V  S  *  L  Y  C  W  L  N  E  *  I  L  L  Y  S  R  F  L  L  V  H  I  L  *  L  A  A  V  I  L  V  M  L  K  H  I  I  *  L  I  Q  V  M  E  D  L  L  C  T  *  R :   F  *  I  *  P  R  *  N  L  T  G  W  I  *  E  L  D  F  L  V  D  C  I  S  W  M  D  L  </first_frame>
            <second_frame>  S  Q  G  R  A  I  A  N  K  R  T  *  R  V  *  D  Q  C  I  S  *  L  S  E  Q  T  S  V  S  V  N  T  A  E  D  Q  I  C  H  Q  P  L  G  K  Q  :  V  G  W  G  W  *  S  K  R  R  L  S  I  *  P  S  Q  V  N  S  S  V  L  *  R  I  C  C  S  G  P  K  T  G  R  I  G  A  Q  G  Y  F  R  A  L  E  A  *  S  *  *  A  S  S  I  A  G  *  T  S  R  F  Y  F  T  Q  G  S  S  *  C  I  Y  F  D  W  Q  Q  *  S  L  L  C  *  S  I  S  F  D  *  S  K  *  W  K  I  Y  S  A  L  K   : G  F  E  F  D  R  D  R  T  *  P  G  G  F  K  S  W  T  F  W  W  I  V  F  H  G  W  I  S </second_frame>
            <third_frame>   P  R  A  G  Q  L  L  I  K  E  L  E  E  F  R  T  N  A  L  A  D  S  V  N  K  H  Q  C  R  L  I  L  Q  R  I  K  Y  V  T  N  H  S  E  S  K :   W  A  G  V  G  E  A  R  G  D  Y  P  F  S  H  H  K  L  T  V  Q  F  Y  D  A  S  A  A  Q  D  R  K  L  E  G  L  V  H  K  A  I  L  E  L  W  R  P  D  P  S  E  L  A  L  L  L  A  K  R  V  D  S  T  L  L  K  V  P  P  S  A  Y  T  L  T  G  S  S  D  P  C  Y  V  E  A  Y  H  L  T  D  P  S  D  G  R  F  T  L  H  L  K  :  V  L  N  L  T  E  I  E  L  N  R  V  D  L  R  V  G  L  S  G  G  L  Y  F  M  D  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43817" stop="43950"/>
                    <exon start="44427" stop="44730"/>
                    <exon start="46331" stop="46414"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRAGQLLIKELEEFRTNALADSVNKHQCRLILQRIKYVTNHSESKWAGVGEARGDYPFSHHKLTVQFYDASAAQDRKLEGLVHKAILELWRPDPSELALLLAKRVDSTLLKVPPSAYTLTGSSDPCYVEAYHLTDPSDGRFTLHLKVLNLTEIELNRVDLRVGLSGGLYFMDGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="48172" PGL_stop="49699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48172" e_stop="48208"/>
            <exon e_start="48678" e_stop="49425"/>
            <exon e_start="49685" e_stop="49699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.791" e_score="0.994"/>
          <exon-only e_score="0.867"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48172" e_stop="48208" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.961">
            <gDNA_intron_boundary i_start="48209" i_stop="48677" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="48678" e_stop="49425" e_length="748"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.791">
            <gDNA_intron_boundary i_start="49426" i_stop="49684" i_length="259"/>
          </intron>
          <exon e_serial="3" e_score="0.867">
            <gDNA_exon_boundary e_start="49685" e_stop="49699" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48172" stop="48208"/>
              <exon start="48678" stop="49370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48172" stop="48208"/>
              <exon start="48678" stop="49353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48173" stop="48208"/>
              <exon start="48678" stop="49178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48182" stop="48208"/>
              <exon start="48678" stop="49374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48709" stop="49344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48768" stop="49425"/>
              <exon start="49685" stop="49699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTCGCACATCATCCGTACAGTTGCTGGATTTGAG : CTCTGTTTTGCTGCTAAAACCTGGTACGGAGGGTTTTTAGGCATGATGGTTTTTGGTGCAAGTGAAGTGAGCAGAAATGTGGACCTTGGCGACGAGACAACCACAATGATGTGCAAATTTGTTATCCGAGCATCAGACGAATCCATTACCAAGGAGATTGCTTCAGATTTTCAGGGTTGGTTGGATGACCTAACTGATGGCGGTGTTGAATACATGCCTGAAGATGAAGTGAAGGTAACTGCTGCTGAAAATCTAAAGATTTCAATGGAACGAATAGCCTTACTAAAGGCTGCAAGACCTCGCCCAAAGTCTCCAAAATCCGAGGATGAAGAAGAGGAGGAAGAAGAAGAAGACGATGATAACAATAAGAACGATGACATACTTAACGTTGAAGGTGGTAAAACTAAGGGACCAACTACTTTATTCAAGTTGACAGCAGAAGAAGCCGAGCATCGAGCACTTCAAGCAGCTATTATTCAAGAATGGCATATGCTCTGTAAAGATAGAAACACCAAAGTAAACTAATTTTTTTTGCTTATTTTCTTTTGATATATTTTGGTTTGATAATTGATTTAGAAGTTAGTTGATTGAAATGAGTTTCAAGTTTGTTTTTATGTAATTCTAGTTTATTTCTTTTCTCCCAGTTTTGTAATTTCTATGTACCTTTTTGAAGCCTGTAAATTAATTCTATTACTACTACATTTTTTGTCTGTTCAAATGAACTTTTTATCTACCCTTTGTTTTCATA : GAAAAAAAAAAAGAA</gDNA_template>
            <first_frame> L  L  A  H  H  P  Y  S  C  W  I  *   : A  L  F  C  C  *  N  L  V  R  R  V  F  R  H  D  G  F  W  C  K  *  S  E  Q  K  C  G  P  W  R  R  D  N  H  N  D  V  Q  I  C  Y  P  S  I  R  R  I  H  Y  Q  G  D  C  F  R  F  S  G  L  V  G  *  P  N  *  W  R  C  *  I  H  A  *  R  *  S  E  G  N  C  C  *  K  S  K  D  F  N  G  T  N  S  L  T  K  G  C  K  T  S  P  K  V  S  K  I  R  G  *  R  R  G  G  R  R  R  R  R  *  *  Q  *  E  R  *  H  T  *  R  *  R  W  *  N  *  G  T  N  Y  F  I  Q  V  D  S  R  R  S  R  A  S  S  T  S  S  S  Y  Y  S  R  M  A  Y  A  L  *  R  *  K  H  Q  S  K  L  I  F  F  A  Y  F  L  L  I  Y  F  G  L  I  I  D  L  E  V  S  *  L  K  *  V  S  S  L  F  L  C  N  S  S  L  F  L  F  S  Q  F  C  N  F  Y  V  P  F  *  S  L  *  I  N  S  I  T  T  T  F  F  V  C  S  N  E  L  F  I  Y  P  L  F  S  * :   K  K  K  K   </first_frame>
            <second_frame>  C  S  H  I  I  R  T  V  A  G  F  E  :  L  C  F  A  A  K  T  W  Y  G  G  F  L  G  M  M  V  F  G  A  S  E  V  S  R  N  V  D  L  G  D  E  T  T  T  M  M  C  K  F  V  I  R  A  S  D  E  S  I  T  K  E  I  A  S  D  F  Q  G  W  L  D  D  L  T  D  G  G  V  E  Y  M  P  E  D  E  V  K  V  T  A  A  E  N  L  K  I  S  M  E  R  I  A  L  L  K  A  A  R  P  R  P  K  S  P  K  S  E  D  E  E  E  E  E  E  E  E  D  D  D  N  N  K  N  D  D  I  L  N  V  E  G  G  K  T  K  G  P  T  T  L  F  K  L  T  A  E  E  A  E  H  R  A  L  Q  A  A  I  I  Q  E  W  H  M  L  C  K  D  R  N  T  K  V  N  *  F  F  L  L  I  F  F  *  Y  I  L  V  *  *  L  I  *  K  L  V  D  *  N  E  F  Q  V  C  F  Y  V  I  L  V  Y  F  F  S  P  S  F  V  I  S  M  Y  L  F  E  A  C  K  L  I  L  L  L  L  H  F  L  S  V  Q  M  N  F  L  S  T  L  C  F  H   : R  K  K  K  R  </second_frame>
            <third_frame>   A  R  T  S  S  V  Q  L  L  D  L  S :   S  V  L  L  L  K  P  G  T  E  G  F  *  A  *  W  F  L  V  Q  V  K  *  A  E  M  W  T  L  A  T  R  Q  P  Q  *  C  A  N  L  L  S  E  H  Q  T  N  P  L  P  R  R  L  L  Q  I  F  R  V  G  W  M  T  *  L  M  A  V  L  N  T  C  L  K  M  K  *  R  *  L  L  L  K  I  *  R  F  Q  W  N  E  *  P  Y  *  R  L  Q  D  L  A  Q  S  L  Q  N  P  R  M  K  K  R  R  K  K  K  K  T  M  I  T  I  R  T  M  T  Y  L  T  L  K  V  V  K  L  R  D  Q  L  L  Y  S  S  *  Q  Q  K  K  P  S  I  E  H  F  K  Q  L  L  F  K  N  G  I  C  S  V  K  I  E  T  P  K  *  T  N  F  F  C  L  F  S  F  D  I  F  W  F  D  N  *  F  R  S  *  L  I  E  M  S  F  K  F  V  F  M  *  F  *  F  I  S  F  L  P  V  L  *  F  L  C  T  F  L  K  P  V  N  *  F  Y  Y  Y  Y  I  F  C  L  F  K  *  T  F  Y  L  P  F  V  F  I  :  E  K  K  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48173" stop="48208"/>
                    <exon start="48678" stop="49202"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSHIIRTVAGFELCFAAKTWYGGFLGMMVFGASEVSRNVDLGDETTTMMCKFVIRASDESITKEIASDFQGWLDDLTDGGVEYMPEDEVKVTAAENLKISMERIALLKAARPRPKSPKSEDEEEEEEEEDDDNNKNDDILNVEGGKTKGPTTLFKLTAEEAEHRALQAAIIQEWHMLCKDRNTKVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="52079" PGL_stop="51588"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52079" e_stop="51588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="52079" e_stop="51588" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52079" stop="51588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTAAGTAGGAGGTGTTTGAACAGGTGGTGGAGATGCAGGAGGAGGTTGGTCATACGCTGAACTTGGTAGATGTTTCAACAGTGATGTCCTATAGACCTTTGGTTGATGATGCTTTTCATAAGACACTTTCTGAAAGGGCCTATATGTTTGATAAGGATATTTAGGTACCTCAGGAGGTTTTCTCTGTGGACTTGAAGAAGTCTCGTAGATAGACAATAAAGGTTCTTTAGGTGTGTATACATATGCAGGCTTAGTATACACTCGAACAGATGTTCTACCTACTTGCGAATTCTTTGAAACATCTCCATTTAAAAGAAGCTCTTGCGCTCCAACAACAGAGAAAAACAACACAAGAAAAAATAGAAAAACACGAAAATGCTTGTTAAACATAGTCAATGAGTTTTTCATTGTATGAAAGTTAATAGTCATAGAGGTGAGCTCTAATGTATTAACATTTCTTCACAATATATGACTTTGATTGAACATAGAA</gDNA_template>
            <first_frame> G  *  V  G  G  V  *  T  G  G  G  D  A  G  G  G  W  S  Y  A  E  L  G  R  C  F  N  S  D  V  L  *  T  F  G  *  *  C  F  S  *  D  T  F  *  K  G  L  Y  V  *  *  G  Y  L  G  T  S  G  G  F  L  C  G  L  E  E  V  S  *  I  D  N  K  G  S  L  G  V  Y  T  Y  A  G  L  V  Y  T  R  T  D  V  L  P  T  C  E  F  F  E  T  S  P  F  K  R  S  S  C  A  P  T  T  E  K  N  N  T  R  K  N  R  K  T  R  K  C  L  L  N  I  V  N  E  F  F  I  V  *  K  L  I  V  I  E  V  S  S  N  V  L  T  F  L  H  N  I  *  L  *  L  N  I  E </first_frame>
            <second_frame>  G  K  *  E  V  F  E  Q  V  V  E  M  Q  E  E  V  G  H  T  L  N  L  V  D  V  S  T  V  M  S  Y  R  P  L  V  D  D  A  F  H  K  T  L  S  E  R  A  Y  M  F  D  K  D  I  *  V  P  Q  E  V  F  S  V  D  L  K  K  S  R  R  *  T  I  K  V  L  *  V  C  I  H  M  Q  A  *  Y  T  L  E  Q  M  F  Y  L  L  A  N  S  L  K  H  L  H  L  K  E  A  L  A  L  Q  Q  Q  R  K  T  T  Q  E  K  I  E  K  H  E  N  A  C  *  T  *  S  M  S  F  S  L  Y  E  S  *  *  S  *  R  *  A  L  M  Y  *  H  F  F  T  I  Y  D  F  D  *  T  *   </second_frame>
            <third_frame>   V  S  R  R  C  L  N  R  W  W  R  C  R  R  R  L  V  I  R  *  T  W  *  M  F  Q  Q  *  C  P  I  D  L  W  L  M  M  L  F  I  R  H  F  L  K  G  P  I  C  L  I  R  I  F  R  Y  L  R  R  F  S  L  W  T  *  R  S  L  V  D  R  Q  *  R  F  F  R  C  V  Y  I  C  R  L  S  I  H  S  N  R  C  S  T  Y  L  R  I  L  *  N  I  S  I  *  K  K  L  L  R  S  N  N  R  E  K  Q  H  K  K  K  *  K  N  T  K  M  L  V  K  H  S  Q  *  V  F  H  C  M  K  V  N  S  H  R  G  E  L  *  C  I  N  I  S  S  Q  Y  M  T  L  I  E  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51869" stop="51663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDNKGSLGVYTYAGLVYTRTDVLPTCEFFETSPFKRSSCAPTTEKNNTRKNRKTRKCLLNIVNEFFIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="54085" PGL_stop="54547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54085" e_stop="54547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="54085" e_stop="54547" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54085" stop="54547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCCATCAAGTCCGTCACCGTCTCCTCCAGTTTATAAGCCTCCACCAAGTCCACCCCCGCCTCCTCCTGTTTATAAACCTCCACCAAGTTCACCGCCTCCACCTCCACCAAGTCCACCTCCTCCTCCACCAAGTCCACCCCCGCCTCCTCCTGTTTACAAACCTCCATCAAGTCCACCACCTTCTCCACCAAGCCCACCACCCCCTTCACCAAGCCCACCACCTACTCCCGTCTATAAACCCCCATCAAGCCCACCGCCTCCTCCACCAAGCCCACCACCTACCCCTGTCTACAAACCTCCACCAAGTCCACCCCAAAGCTCACCAGGGTATGGAAATCCTCCACCTTTTGGTCACTATTAAATGAATAATAAAACTACTTGTAACAGTTGGATTTGTTTCAATTGTATTACGTATGTTTCTAAAAATAATCTTGTGATATAAAGTGGAATAATCCAACTCC</gDNA_template>
            <first_frame> P  P  S  S  P  S  P  S  P  P  V  Y  K  P  P  P  S  P  P  P  P  P  P  V  Y  K  P  P  P  S  S  P  P  P  P  P  P  S  P  P  P  P  P  P  S  P  P  P  P  P  P  V  Y  K  P  P  S  S  P  P  P  S  P  P  S  P  P  P  P  S  P  S  P  P  P  T  P  V  Y  K  P  P  S  S  P  P  P  P  P  P  S  P  P  P  T  P  V  Y  K  P  P  P  S  P  P  Q  S  S  P  G  Y  G  N  P  P  P  F  G  H  Y  *  M  N  N  K  T  T  C  N  S  W  I  C  F  N  C  I  T  Y  V  S  K  N  N  L  V  I  *  S  G  I  I  Q  L  </first_frame>
            <second_frame>  L  H  Q  V  R  H  R  L  L  Q  F  I  S  L  H  Q  V  H  P  R  L  L  L  F  I  N  L  H  Q  V  H  R  L  H  L  H  Q  V  H  L  L  L  H  Q  V  H  P  R  L  L  L  F  T  N  L  H  Q  V  H  H  L  L  H  Q  A  H  H  P  L  H  Q  A  H  H  L  L  P  S  I  N  P  H  Q  A  H  R  L  L  H  Q  A  H  H  L  P  L  S  T  N  L  H  Q  V  H  P  K  A  H  Q  G  M  E  I  L  H  L  L  V  T  I  K  *  I  I  K  L  L  V  T  V  G  F  V  S  I  V  L  R  M  F  L  K  I  I  L  *  Y  K  V  E  *  S  N  S </second_frame>
            <third_frame>   S  I  K  S  V  T  V  S  S  S  L  *  A  S  T  K  S  T  P  A  S  S  C  L  *  T  S  T  K  F  T  A  S  T  S  T  K  S  T  S  S  S  T  K  S  T  P  A  S  S  C  L  Q  T  S  I  K  S  T  T  F  S  T  K  P  T  T  P  F  T  K  P  T  T  Y  S  R  L  *  T  P  I  K  P  T  A  S  S  T  K  P  T  T  Y  P  C  L  Q  T  S  T  K  S  T  P  K  L  T  R  V  W  K  S  S  T  F  W  S  L  L  N  E  *  *  N  Y  L  *  Q  L  D  L  F  Q  L  Y  Y  V  C  F  *  K  *  S  C  D  I  K  W  N  N  P  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54086" stop="54451"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQVRHRLLQFISLHQVHPRLLLFINLHQVHRLHLHQVHLLLHQVHPRLLLFTNLHQVHHLLHQAHHPLHQAHHLLPSINPHQAHRLLHQAHHLPLSTNLHQVHPKAHQGMEILHLLVTIK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54085" stop="54447"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPSSPSPSPPVYKPPPSPPPPPPVYKPPPSSPPPPPPSPPPPPPSPPPPPPVYKPPSSPPPSPPSPPPPSPSPPPTPVYKPPSSPPPPPPSPPPTPVYKPPPSPPQSSPGYGNPPPFGHY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="57253" PGL_stop="59643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57253" e_stop="57459"/>
            <exon e_start="58208" e_stop="58497"/>
            <exon e_start="59210" e_stop="59643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57253" e_stop="57459" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.837">
            <gDNA_intron_boundary i_start="57460" i_stop="58207" i_length="748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58208" e_stop="58497" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="58498" i_stop="59209" i_length="712"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59210" e_stop="59643" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57253" stop="57459"/>
              <exon start="58208" stop="58497"/>
              <exon start="59210" stop="59232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57271" stop="57459"/>
              <exon start="58208" stop="58497"/>
              <exon start="59210" stop="59457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57271" stop="57459"/>
              <exon start="58208" stop="58497"/>
              <exon start="59210" stop="59266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58325" stop="58497"/>
              <exon start="59210" stop="59643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379368" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAGTAGATTTTTATTTTTTAATTTCAAAGAAAAAAAAAAGGATTAAAATGGTGGAAATTATTTCACCAGGATTTAGATTTTATCCAACAGAAGAAGAATTAATATCTTTTTATTTACATAAAAAGCTTGAAGGAAAAAAGCCAGAGCTTGATAGAGTAATTCCAGTTGTTACTATTTATGATTTTGATCCTTGGCATCTTCCAA : AATTTCATGGGGAATTGTGCATGGGAGATAGAGAGCAATGGTTTTTCTTTGTGCCAAGACAAGAAAGAGAAGCTAGAGGAGGAAGACCATGTAGAACAACAAATTGTGGTTATTGGAAGGCAACTGGTTCACCAAGTTATGTTTATTCATCAAATAATAAAGTTATTGGAGTTAAAAAAAGTATGGTATTTTATAAAGGAAAAGCACCAACTGGTAAAAAAACTAAGTGGAAAATGAATGAATATAGAGCTATTCAAGAAGAAGTTAATTCAACTCTTGCTATTCCAAAG : TTAAGGCATGAAATGAGTTTATGTCGAATTTACGTTATATCGGGAAGTTTTCGAGCGTTCGATCGGAGACCAATTGCACCAACAATAACAAGGGAACCATCAAAATCAATTATAAATCAAGGTGGAATTTCTATGGAAAATGTCACTAAAATGGAGGCAATAAGTGATGAAAACTTATTTATGGAAGAACAAGATTATGTTAATCTTAATCATAATGATCAAATCCCTATTATTAATCAAGAAATTAACATCAACTCACACAACAACAAGAGGGTTAAAAGTAATCTTCATGATGAGACTCTAATTAGTGGTTGGGAACAATTTAATTGGATGTAAACTCGATGTTTATTCTGGGATCTGATTAAATTTGATTTATGTTCGTATAAAATTTATCATAGAAAAAATCACTCGATATTGAATTTTTTCCAGAAACT</gDNA_template>
            <first_frame> K  K  *  I  F  I  F  *  F  Q  R  K  K  K  G  L  K  W  W  K  L  F  H  Q  D  L  D  F  I  Q  Q  K  K  N  *  Y  L  F  I  Y  I  K  S  L  K  E  K  S  Q  S  L  I  E  *  F  Q  L  L  L  F  M  I  L  I  L  G  I  F  Q  :  N  F  M  G  N  C  A  W  E  I  E  S  N  G  F  S  L  C  Q  D  K  K  E  K  L  E  E  E  D  H  V  E  Q  Q  I  V  V  I  G  R  Q  L  V  H  Q  V  M  F  I  H  Q  I  I  K  L  L  E  L  K  K  V  W  Y  F  I  K  E  K  H  Q  L  V  K  K  L  S  G  K  *  M  N  I  E  L  F  K  K  K  L  I  Q  L  L  L  F  Q  S :   *  G  M  K  *  V  Y  V  E  F  T  L  Y  R  E  V  F  E  R  S  I  G  D  Q  L  H  Q  Q  *  Q  G  N  H  Q  N  Q  L  *  I  K  V  E  F  L  W  K  M  S  L  K  W  R  Q  *  V  M  K  T  Y  L  W  K  N  K  I  M  L  I  L  I  I  M  I  K  S  L  L  L  I  K  K  L  T  S  T  H  T  T  T  R  G  L  K  V  I  F  M  M  R  L  *  L  V  V  G  N  N  L  I  G  C  K  L  D  V  Y  S  G  I  *  L  N  L  I  Y  V  R  I  K  F  I  I  E  K  I  T  R  Y  *  I  F  S  R  N  </first_frame>
            <second_frame>  K  S  R  F  L  F  F  N  F  K  E  K  K  K  D  *  N  G  G  N  Y  F  T  R  I  *  I  L  S  N  R  R  R  I  N  I  F  L  F  T  *  K  A  *  R  K  K  A  R  A  *  *  S  N  S  S  C  Y  Y  L  *  F  *  S  L  A  S  S  K :   I  S  W  G  I  V  H  G  R  *  R  A  M  V  F  L  C  A  K  T  R  K  R  S  *  R  R  K  T  M  *  N  N  K  L  W  L  L  E  G  N  W  F  T  K  L  C  L  F  I  K  *  *  S  Y  W  S  *  K  K  Y  G  I  L  *  R  K  S  T  N  W  *  K  N  *  V  E  N  E  *  I  *  S  Y  S  R  R  S  *  F  N  S  C  Y  S  K   : V  K  A  *  N  E  F  M  S  N  L  R  Y  I  G  K  F  S  S  V  R  S  E  T  N  C  T  N  N  N  K  G  T  I  K  I  N  Y  K  S  R  W  N  F  Y  G  K  C  H  *  N  G  G  N  K  *  *  K  L  I  Y  G  R  T  R  L  C  *  S  *  S  *  *  S  N  P  Y  Y  *  S  R  N  *  H  Q  L  T  Q  Q  Q  E  G  *  K  *  S  S  *  *  D  S  N  *  W  L  G  T  I  *  L  D  V  N  S  M  F  I  L  G  S  D  *  I  *  F  M  F  V  *  N  L  S  *  K  K  S  L  D  I  E  F  F  P  E  T </second_frame>
            <third_frame>   K  V  D  F  Y  F  L  I  S  K  K  K  K  R  I  K  M  V  E  I  I  S  P  G  F  R  F  Y  P  T  E  E  E  L  I  S  F  Y  L  H  K  K  L  E  G  K  K  P  E  L  D  R  V  I  P  V  V  T  I  Y  D  F  D  P  W  H  L  P   : K  F  H  G  E  L  C  M  G  D  R  E  Q  W  F  F  F  V  P  R  Q  E  R  E  A  R  G  G  R  P  C  R  T  T  N  C  G  Y  W  K  A  T  G  S  P  S  Y  V  Y  S  S  N  N  K  V  I  G  V  K  K  S  M  V  F  Y  K  G  K  A  P  T  G  K  K  T  K  W  K  M  N  E  Y  R  A  I  Q  E  E  V  N  S  T  L  A  I  P  K  :  L  R  H  E  M  S  L  C  R  I  Y  V  I  S  G  S  F  R  A  F  D  R  R  P  I  A  P  T  I  T  R  E  P  S  K  S  I  I  N  Q  G  G  I  S  M  E  N  V  T  K  M  E  A  I  S  D  E  N  L  F  M  E  E  Q  D  Y  V  N  L  N  H  N  D  Q  I  P  I  I  N  Q  E  I  N  I  N  S  H  N  N  K  R  V  K  S  N  L  H  D  E  T  L  I  S  G  W  E  Q  F  N  W  M  *  T  R  C  L  F  W  D  L  I  K  F  D  L  C  S  Y  K  I  Y  H  R  K  N  H  S  I  L  N  F  F  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57255" stop="57459"/>
                    <exon start="58208" stop="58497"/>
                    <exon start="59210" stop="59545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVDFYFLISKKKKRIKMVEIISPGFRFYPTEEELISFYLHKKLEGKKPELDRVIPVVTIYDFDPWHLPKFHGELCMGDREQWFFFVPRQEREARGGRPCRTTNCGYWKATGSPSYVYSSNNKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRAIQEEVNSTLAIPKLRHEMSLCRIYVISGSFRAFDRRPIAPTITREPSKSIINQGGISMENVTKMEAISDENLFMEEQDYVNLNHNDQIPIINQEININSHNNKRVKSNLHDETLISGWEQFNWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="60616" PGL_stop="59280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60616" e_stop="60594"/>
            <exon e_start="59841" e_stop="59280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.652"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.652">
            <gDNA_exon_boundary e_start="60616" e_stop="60594" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60593" i_stop="59842" i_length="752"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="59841" e_stop="59280" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60616" stop="60594"/>
              <exon start="59841" stop="59280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375867" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTCATTATGACTTAAG : TTTCATAAAAATTATAAATATTATAATAAAATATTCTTATCAAAATAGTACAAGTTACATGTTTGATTTTATAATGAAATCATCCTAATATTTTCCCTAAATTTTTCCCTTTCTTAACCCTTAAGAAATAGAAATTAATTTTACTATCGATAGTTATATCAGACGGATAAAATCTCTCTACTCTGTTGTTTCGAGTTCAGTTTCTGGAAAAAATTCAATATCGAGTGATTTTTTCTATGATAAATTTTATACGAACATAAATCAAATTTAATCAGATCCCAGAATAAACATCGAGTTTACATCCAATTAAATTGTTCCCAACCACTAATTAGAGTCTCATCATGAAGATTACTTTTAACCCTCTTGTTGTTGTGTGAGTTGATGTTAATTTCTTGATTAATAATAGGGATTTGATCATTATGATTAAGATTAACATAATCTTGTTCTTCCATAAATAAGTTTTCATCACTTATTGCCTCCATTTTAGTGACATTTTCCATAGAAATTCCACCTTGATTTATAATTGATTTTGATGGTTCCCTTGTTATTGTTGGTGCAATTG</gDNA_template>
            <first_frame> F  F  F  H  Y  D  L  S :   F  I  K  I  I  N  I  I  I  K  Y  S  Y  Q  N  S  T  S  Y  M  F  D  F  I  M  K  S  S  *  Y  F  P  *  I  F  P  F  L  N  P  *  E  I  E  I  N  F  T  I  D  S  Y  I  R  R  I  K  S  L  Y  S  V  V  S  S  S  V  S  G  K  N  S  I  S  S  D  F  F  Y  D  K  F  Y  T  N  I  N  Q  I  *  S  D  P  R  I  N  I  E  F  T  S  N  *  I  V  P  N  H  *  L  E  S  H  H  E  D  Y  F  *  P  S  C  C  C  V  S  *  C  *  F  L  D  *  *  *  G  F  D  H  Y  D  *  D  *  H  N  L  V  L  P  *  I  S  F  H  H  L  L  P  P  F  *  *  H  F  P  *  K  F  H  L  D  L  *  L  I  L  M  V  P  L  L  L  L  V  Q  L </first_frame>
            <second_frame>  F  F  F  I  M  T  *   : V  S  *  K  L  *  I  L  *  *  N  I  L  I  K  I  V  Q  V  T  C  L  I  L  *  *  N  H  P  N  I  F  P  K  F  F  P  F  L  T  L  K  K  *  K  L  I  L  L  S  I  V  I  S  D  G  *  N  L  S  T  L  L  F  R  V  Q  F  L  E  K  I  Q  Y  R  V  I  F  S  M  I  N  F  I  R  T  *  I  K  F  N  Q  I  P  E  *  T  S  S  L  H  P  I  K  L  F  P  T  T  N  *  S  L  I  M  K  I  T  F  N  P  L  V  V  V  *  V  D  V  N  F  L  I  N  N  R  D  L  I  I  M  I  K  I  N  I  I  L  F  F  H  K  *  V  F  I  T  Y  C  L  H  F  S  D  I  F  H  R  N  S  T  L  I  Y  N  *  F  *  W  F  P  C  Y  C  W  C  N   </second_frame>
            <third_frame>   F  F  S  L  *  L  K  :  F  H  K  N  Y  K  Y  Y  N  K  I  F  L  S  K  *  Y  K  L  H  V  *  F  Y  N  E  I  I  L  I  F  S  L  N  F  S  L  S  *  P  L  R  N  R  N  *  F  Y  Y  R  *  L  Y  Q  T  D  K  I  S  L  L  C  C  F  E  F  S  F  W  K  K  F  N  I  E  *  F  F  L  *  *  I  L  Y  E  H  K  S  N  L  I  R  S  Q  N  K  H  R  V  Y  I  Q  L  N  C  S  Q  P  L  I  R  V  S  S  *  R  L  L  L  T  L  L  L  L  C  E  L  M  L  I  S  *  L  I  I  G  I  *  S  L  *  L  R  L  T  *  S  C  S  S  I  N  K  F  S  S  L  I  A  S  I  L  V  T  F  S  I  E  I  P  P  *  F  I  I  D  F  D  G  S  L  V  I  V  G  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="70865" PGL_stop="63325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70853" e_stop="70670"/>
            <exon e_start="69054" e_stop="68988"/>
            <exon e_start="68789" e_stop="68559"/>
            <exon e_start="66919" e_stop="66898"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.499" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="70853" e_stop="70670" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69054" e_stop="68988" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68789" e_stop="68559" e_length="231"/>
          </exon>
          <intron i_serial="3" don_prob="0.499" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68558" i_stop="66920" i_length="1639"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66919" e_stop="66898" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70853" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68559"/>
              <exon start="66919" stop="66898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70807" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="68988"/>
              <exon start="68789" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG : TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG : GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAGGTTCTGCAAGTTTCCTCTTTAAG : AGCAAAAACATGCACTCCTGAC</gDNA_template>
            <first_frame> K  L  L  I  T  K  L  H  Q  I  V  H  S  R  F  F  D  F  L  F  L  S  N  F  F  D  F  Q  R  T  Q  T  A  N  L  F  C  E  R  D  R  *  Y  Y  C  N  L  P  L  D  I  F  F  R  S  C  T  I  A  S  R   : V  L  R  K  G  L  N  W  T  A  N  G  L  N  L  M  I  S  V  T  I  F  R :   V  Q  *  K  I  Q  M  S  C  F  F  L  Y  H  C  P  Y  H  L  Q  K  P  S  S  L  V  D  F  H  L  E  R  *  K  P  *  K  Q  H  M  V  Q  L  H  K  F  L  I  L  Q  E  M  G  L  I  S  H  L  N  *  T  C  Q  N  F  P  Q  M  K  V  L  Q  V  S  S  L  R :   A  K  T  C  T  P  D </first_frame>
            <second_frame>  N  F  *  *  Q  N  F  I  K  L  S  I  Q  D  S  L  I  F  C  F  F  L  I  S  L  I  F  K  E  P  K  L  R  I  C  F  V  K  E  I  D  D  I  T  A  I  S  L  *  I  S  S  S  D  L  V  Q  S  R  P  E  :  S  *  E  R  G  *  T  G  Q  P  M  G  *  I  *  *  Y  P  L  P  Y  S   : G  F  S  E  K  S  K  C  L  A  S  F  C  I  I  A  H  T  T  S  R  N  R  P  L  W  W  T  S  T  W  S  A  R  S  H  K  S  S  I  W  C  S  C  T  N  S  *  S  S  K  R  W  V  *  S  H  T  *  T  K  L  V  K  T  S  P  R  *  R  F  C  K  F  P  L  *   : E  Q  K  H  A  L  L   </second_frame>
            <third_frame>   T  F  N  N  K  T  S  S  N  C  P  F  K  I  L  *  F  S  V  S  F  *  F  L  *  F  S  K  N  P  N  C  E  F  V  L  *  K  R  S  M  I  L  L  Q  S  P  S  R  Y  L  L  Q  I  L  Y  N  R  V  Q  S :   L  E  K  G  V  E  L  D  S  Q  W  V  E  F  D  D  I  R  Y  H  I  Q  :  G  S  V  K  N  P  N  V  L  L  L  S  V  S  L  P  I  P  P  P  E  T  V  L  F  G  G  L  P  L  G  A  L  E  A  I  K  A  A  Y  G  A  V  A  Q  I  L  D  P  P  R  D  G  F  N  L  T  L  K  L  N  L  S  K  L  P  P  D  E  G  S  A  S  F  L  F  K  :  S  K  N  M  H  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70740" stop="70670"/>
                    <exon start="69054" stop="68988"/>
                    <exon start="68789" stop="68559"/>
                    <exon start="66919" stop="66899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSMILLQSPSRYLLQILYNRVQSLEKGVELDSQWVEFDDIRYHIQGSVKNPNVLLLSVSLPIPPPETVLFGGLPLGALEAIKAAYGAVAQILDPPRDGFNLTLKLNLSKLPPDEGSASFLFKSKNMHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70865" e_stop="70670"/>
            <exon e_start="69054" e_stop="68988"/>
            <exon e_start="68789" e_stop="68582"/>
            <exon e_start="66919" e_stop="66750"/>
            <exon e_start="66237" e_stop="66160"/>
            <exon e_start="65288" e_stop="65156"/>
            <exon e_start="65053" e_stop="64990"/>
            <exon e_start="64200" e_stop="64144"/>
            <exon e_start="63350" e_stop="63325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.965"/>
          <exon-only e_score="0.885"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70865" e_stop="70670" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="70669" i_stop="69055" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69054" e_stop="68988" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="68987" i_stop="68790" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68789" e_stop="68582" e_length="208"/>
          </exon>
          <intron i_serial="3" don_prob="0.884" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68581" i_stop="66920" i_length="1662"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66919" e_stop="66750" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="66749" i_stop="66238" i_length="512"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66237" e_stop="66160" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.684">
            <gDNA_intron_boundary i_start="66159" i_stop="65289" i_length="871"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65288" e_stop="65156" e_length="133"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65155" i_stop="65054" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65053" e_stop="64990" e_length="64"/>
          </exon>
          <intron i_serial="7" don_prob="0.980" acc_prob="0.980">
            <gDNA_intron_boundary i_start="64989" i_stop="64201" i_length="789"/>
          </intron>
          <exon e_serial="8" e_score="0.965">
            <gDNA_exon_boundary e_start="64200" e_stop="64144" e_length="57"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64143" i_stop="63351" i_length="793"/>
          </intron>
          <exon e_serial="9" e_score="0.885">
            <gDNA_exon_boundary e_start="63350" e_stop="63325" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70865" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68582"/>
              <exon start="66919" stop="66750"/>
              <exon start="66237" stop="66160"/>
              <exon start="65288" stop="65246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70733" stop="70670"/>
              <exon start="69054" stop="68988"/>
              <exon start="68789" stop="68582"/>
              <exon start="66919" stop="66750"/>
              <exon start="66237" stop="66160"/>
              <exon start="65288" stop="65156"/>
              <exon start="65053" stop="64990"/>
              <exon start="64200" stop="64144"/>
              <exon start="63350" stop="63325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69048" stop="68988"/>
              <exon start="68789" stop="68688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGAGAAATCAAACTTTTAATAACAAAACTTCATCAAATTGTCCATTCAAGATTCTTTGATTTTCTGTTTCTTTCTAATTTCTTTGATTTTCAAAGAACCCAAACTGCGAATTTGTTTTGTGAAAGAGATCGATGATATTACTGCAATCTCCCTCTAGATATCTTCTTCAGATCTTGTACAATCGCGTCCAGAG : TCTTGAGAAAGGGGTTGAACTGGACAGCCAATGGGTTGAATTTGATGATATCCGTTACCATATTCAG : GGTTCAGTGAAAAATCCAAATGTCTTGCTTCTTTCTGTATCATTGCCCATACCACCTCCAGAAACCGTCCTCTTTGGTGGACTTCCACTTGGAGCGCTAGAAGCCATAAAAGCAGCATATGGTGCAGTTGCACAAATTCTTGATCCTCCAAGAGATGGGTTTAATCTCACACTTAAACTAAACTTGTCAAAACTTCCCCCAGATGAAG : AGCAAAAACATGCACTCCTGACAAAGATTGCATCCGTGAGGGAGGTAGTAATGGGAGCCCCACTGAGGGCAGTTTTGAAACAACTTGTTACAAGGACAGTTCCTTCCGATCTAGGCAAGCCCGTTGCCCTGGTTCATCGTCCTAATGAGTCTTTTTTCCTTGTACCTCAG : GCAGACAAGGTGACCGTCATATTTCCTATGAGATTCAATGATTCCATAGATACTGTTCTAGCAACATCTTTCTTACAG : GAATTTGTTGAGGCAAGACGAACTGCTGGACTTAATAATGCCCCTCCTTGTTTGTGGTCTCCTTCTCCTCCTCAAGAACTGACAGAAGCTTTTACAGAAGCATTATCTGCTAATGCCGGATTTGTTAGTTTTG : AAAGCTGGACAGAACTGTCTGGAACCTATCAACCTTTCATGCTTATGTAAATTATCATGTTAAG : TGTTCTGAATGTTTCATGCATACTCGGATGAGGCGTCAGGTGGAGTCATTGATACAG : GCACTTGACCGTGCCAAACCAGATCC</gDNA_template>
            <first_frame> K  R  E  I  K  L  L  I  T  K  L  H  Q  I  V  H  S  R  F  F  D  F  L  F  L  S  N  F  F  D  F  Q  R  T  Q  T  A  N  L  F  C  E  R  D  R  *  Y  Y  C  N  L  P  L  D  I  F  F  R  S  C  T  I  A  S  R   : V  L  R  K  G  L  N  W  T  A  N  G  L  N  L  M  I  S  V  T  I  F  R :   V  Q  *  K  I  Q  M  S  C  F  F  L  Y  H  C  P  Y  H  L  Q  K  P  S  S  L  V  D  F  H  L  E  R  *  K  P  *  K  Q  H  M  V  Q  L  H  K  F  L  I  L  Q  E  M  G  L  I  S  H  L  N  *  T  C  Q  N  F  P  Q  M  K  :  S  K  N  M  H  S  *  Q  R  L  H  P  *  G  R  *  *  W  E  P  H  *  G  Q  F  *  N  N  L  L  Q  G  Q  F  L  P  I  *  A  S  P  L  P  W  F  I  V  L  M  S  L  F  S  L  Y  L  R :   Q  T  R  *  P  S  Y  F  L  *  D  S  M  I  P  *  I  L  F  *  Q  H  L  S  Y  R :   N  L  L  R  Q  D  E  L  L  D  L  I  M  P  L  L  V  C  G  L  L  L  L  L  K  N  *  Q  K  L  L  Q  K  H  Y  L  L  M  P  D  L  L  V  L  :  K  A  G  Q  N  C  L  E  P  I  N  L  S  C  L  C  K  L  S  C  *   : V  F  *  M  F  H  A  Y  S  D  E  A  S  G  G  V  I  D  T   : G  T  *  P  C  Q  T  R  S </first_frame>
            <second_frame>  K  E  K  S  N  F  *  *  Q  N  F  I  K  L  S  I  Q  D  S  L  I  F  C  F  F  L  I  S  L  I  F  K  E  P  K  L  R  I  C  F  V  K  E  I  D  D  I  T  A  I  S  L  *  I  S  S  S  D  L  V  Q  S  R  P  E  :  S  *  E  R  G  *  T  G  Q  P  M  G  *  I  *  *  Y  P  L  P  Y  S   : G  F  S  E  K  S  K  C  L  A  S  F  C  I  I  A  H  T  T  S  R  N  R  P  L  W  W  T  S  T  W  S  A  R  S  H  K  S  S  I  W  C  S  C  T  N  S  *  S  S  K  R  W  V  *  S  H  T  *  T  K  L  V  K  T  S  P  R  *  R :   A  K  T  C  T  P  D  K  D  C  I  R  E  G  G  S  N  G  S  P  T  E  G  S  F  E  T  T  C  Y  K  D  S  S  F  R  S  R  Q  A  R  C  P  G  S  S  S  *  *  V  F  F  P  C  T  S   : G  R  Q  G  D  R  H  I  S  Y  E  I  Q  *  F  H  R  Y  C  S  S  N  I  F  L  T   : G  I  C  *  G  K  T  N  C  W  T  *  *  C  P  S  L  F  V  V  S  F  S  S  S  R  T  D  R  S  F  Y  R  S  I  I  C  *  C  R  I  C  *  F  * :   K  L  D  R  T  V  W  N  L  S  T  F  H  A  Y  V  N  Y  H  V  K  :  C  S  E  C  F  M  H  T  R  M  R  R  Q  V  E  S  L  I  Q  :  A  L  D  R  A  K  P  D   </second_frame>
            <third_frame>   K  R  N  Q  T  F  N  N  K  T  S  S  N  C  P  F  K  I  L  *  F  S  V  S  F  *  F  L  *  F  S  K  N  P  N  C  E  F  V  L  *  K  R  S  M  I  L  L  Q  S  P  S  R  Y  L  L  Q  I  L  Y  N  R  V  Q  S :   L  E  K  G  V  E  L  D  S  Q  W  V  E  F  D  D  I  R  Y  H  I  Q  :  G  S  V  K  N  P  N  V  L  L  L  S  V  S  L  P  I  P  P  P  E  T  V  L  F  G  G  L  P  L  G  A  L  E  A  I  K  A  A  Y  G  A  V  A  Q  I  L  D  P  P  R  D  G  F  N  L  T  L  K  L  N  L  S  K  L  P  P  D  E   : E  Q  K  H  A  L  L  T  K  I  A  S  V  R  E  V  V  M  G  A  P  L  R  A  V  L  K  Q  L  V  T  R  T  V  P  S  D  L  G  K  P  V  A  L  V  H  R  P  N  E  S  F  F  L  V  P  Q  :  A  D  K  V  T  V  I  F  P  M  R  F  N  D  S  I  D  T  V  L  A  T  S  F  L  Q  :  E  F  V  E  A  R  R  T  A  G  L  N  N  A  P  P  C  L  W  S  P  S  P  P  Q  E  L  T  E  A  F  T  E  A  L  S  A  N  A  G  F  V  S  F   : E  S  W  T  E  L  S  G  T  Y  Q  P  F  M  L  M  *  I  I  M  L  S :   V  L  N  V  S  C  I  L  G  *  G  V  R  W  S  H  *  Y  R :   H  L  T  V  P  N  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70740" stop="70670"/>
                    <exon start="69054" stop="68988"/>
                    <exon start="68789" stop="68582"/>
                    <exon start="66919" stop="66750"/>
                    <exon start="66237" stop="66160"/>
                    <exon start="65288" stop="65156"/>
                    <exon start="65053" stop="65004"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRSMILLQSPSRYLLQILYNRVQSLEKGVELDSQWVEFDDIRYHIQGSVKNPNVLLLSVSLPIPPPETVLFGGLPLGALEAIKAAYGAVAQILDPPRDGFNLTLKLNLSKLPPDEEQKHALLTKIASVREVVMGAPLRAVLKQLVTRTVPSDLGKPVALVHRPNESFFLVPQADKVTVIFPMRFNDSIDTVLATSFLQEFVEARRTAGLNNAPPCLWSPSPPQELTEAFTEALSANAGFVSFESWTELSGTYQPFMLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78287" PGL_stop="78081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78287" e_stop="78081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="78287" e_stop="78081" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78287" stop="78081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCAATTTGAGAGCAAAGTGAGCTATTCCATAGACTATATAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACATTGAGTGTTGTATTCGTGACTACACAGTGTAAAATTCCTTACTATAGTAATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  Q  F  E  S  K  V  S  Y  S  I  D  Y  I  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  V  V  F  V  T  T  Q  C  K  I  P  Y  Y  S  N  I  S  C  S  S </first_frame>
            <second_frame>  K  T  N  L  R  A  K  *  A  I  P  *  T  I  *  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  H  *  V  L  Y  S  *  L  H  S  V  K  F  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  I  *  E  Q  S  E  L  F  H  R  L  Y  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  I  E  C  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="84966" PGL_stop="84550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84966" e_stop="84550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="84966" e_stop="84550" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84966" stop="84550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTATTCACGATAGCAAAACTGAAGCTGCAGGCCACCAAATCCAACTCTGTCGGTTCCTATTCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGCTGTTTTGACTGAAATTTGACTGCGAAAATCTGCTCTTTTTCTCTCTTTTTGGCTGCTAAAAAACTCTCTGT</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  N  *  R  S  K  I  T  N  F  A  A  T  I  H  D  S  K  T  E  A  A  G  H  Q  I  Q  L  C  R  F  L  F  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  G  I  A  I  *  S  W  L  F  *  L  K  F  D  C  E  N  L  L  F  F  S  L  F  G  C  *  K  T  L  C </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  P  I  S  Q  L  L  F  T  I  A  K  L  K  L  Q  A  T  K  S  N  S  V  G  S  Y  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  F  D  *  N  L  T  A  K  I  C  S  F  S  L  F  L  A  A  K  K  L  S   </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  E  L  K  E  Q  N  H  Q  F  R  S  Y  Y  S  R  *  Q  N  *  S  C  R  P  P  N  P  T  L  S  V  P  I  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  G  N  R  N  L  K  L  A  V  L  T  E  I  *  L  R  K  S  A  L  F  L  S  F  W  L  L  K  N  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84803" stop="84609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKGAKSPISQLLFTIAKLKLQATKSNSVGSYSKIEMKIICCPKISSIGQETKRESQFEVGCFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="86233" PGL_stop="86931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86233" e_stop="86931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="86233" e_stop="86931" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86233" stop="86749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86262" stop="86931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86262" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86262" stop="86799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86262" stop="86799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86263" stop="86916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTATTCAGTATCTTCTCCGACCAATGAGCAAAGAAGGAAGTAGAAGAGGAGTAAAATGGAGCTGGACCTCCGCCTTCGTCGGTGCCGCCGCTGCCGCAGCAACGGTGATGACACTCTCTTCGAAGCCACGGGATCCTGATTTTCATCTCATCTCCATCGATCTCACTTCCTTCAAGCTCAATTTCCCCGTCGTAGACGCGGAACTCATCCTCACCGTTCACGTGACTAACCCTAACGTTACTTCAATCAACTACTCCTCAACAGAAATGTCGATTTTCTACTCCGGCGATCACCTCGGTTCAGCTCGTGTGAAAGCCGGATCTCAGCCGCCGCGTTCCTGTCAGGTACTCCGTCTTCCGGCGAGGTTAAGCGGACTTCAACTTGCACATCACGGGAAGGAATTCGTCGCCGATGTAGCGAAGAGGGAGATGTTGCTGGATGCTACGGTGGATATAGAAGGTTTTGCGAAGGTGATGTGGTGGGACCATAAATTCCGGGTGCACGTGGATAGTCACGTGACCGTAGACCCGGTTTTTCTTGACGTTATTGATCAGGAAAATAAATCGGCTTTAGAGGTCTTTGTGAAATAACGGTTCAGTCCGGTTCAGTGTGTTGTATCGGTTTATTTTGTATTCATCACCACTAAAAATGTACTTCAGTAATTAAAATATTTAAGTTCTATCGTTACAATTCACTTC</gDNA_template>
            <first_frame> S  I  Q  Y  L  L  R  P  M  S  K  E  G  S  R  R  G  V  K  W  S  W  T  S  A  F  V  G  A  A  A  A  A  A  T  V  M  T  L  S  S  K  P  R  D  P  D  F  H  L  I  S  I  D  L  T  S  F  K  L  N  F  P  V  V  D  A  E  L  I  L  T  V  H  V  T  N  P  N  V  T  S  I  N  Y  S  S  T  E  M  S  I  F  Y  S  G  D  H  L  G  S  A  R  V  K  A  G  S  Q  P  P  R  S  C  Q  V  L  R  L  P  A  R  L  S  G  L  Q  L  A  H  H  G  K  E  F  V  A  D  V  A  K  R  E  M  L  L  D  A  T  V  D  I  E  G  F  A  K  V  M  W  W  D  H  K  F  R  V  H  V  D  S  H  V  T  V  D  P  V  F  L  D  V  I  D  Q  E  N  K  S  A  L  E  V  F  V  K  *  R  F  S  P  V  Q  C  V  V  S  V  Y  F  V  F  I  T  T  K  N  V  L  Q  *  L  K  Y  L  S  S  I  V  T  I  H  F </first_frame>
            <second_frame>  V  F  S  I  F  S  D  Q  *  A  K  K  E  V  E  E  E  *  N  G  A  G  P  P  P  S  S  V  P  P  L  P  Q  Q  R  *  *  H  S  L  R  S  H  G  I  L  I  F  I  S  S  P  S  I  S  L  P  S  S  S  I  S  P  S  *  T  R  N  S  S  S  P  F  T  *  L  T  L  T  L  L  Q  S  T  T  P  Q  Q  K  C  R  F  S  T  P  A  I  T  S  V  Q  L  V  *  K  P  D  L  S  R  R  V  P  V  R  Y  S  V  F  R  R  G  *  A  D  F  N  L  H  I  T  G  R  N  S  S  P  M  *  R  R  G  R  C  C  W  M  L  R  W  I  *  K  V  L  R  R  *  C  G  G  T  I  N  S  G  C  T  W  I  V  T  *  P  *  T  R  F  F  L  T  L  L  I  R  K  I  N  R  L  *  R  S  L  *  N  N  G  S  V  R  F  S  V  L  Y  R  F  I  L  Y  S  S  P  L  K  M  Y  F  S  N  *  N  I  *  V  L  S  L  Q  F  T   </second_frame>
            <third_frame>   Y  S  V  S  S  P  T  N  E  Q  R  R  K  *  K  R  S  K  M  E  L  D  L  R  L  R  R  C  R  R  C  R  S  N  G  D  D  T  L  F  E  A  T  G  S  *  F  S  S  H  L  H  R  S  H  F  L  Q  A  Q  F  P  R  R  R  R  G  T  H  P  H  R  S  R  D  *  P  *  R  Y  F  N  Q  L  L  L  N  R  N  V  D  F  L  L  R  R  S  P  R  F  S  S  C  E  S  R  I  S  A  A  A  F  L  S  G  T  P  S  S  G  E  V  K  R  T  S  T  C  T  S  R  E  G  I  R  R  R  C  S  E  E  G  D  V  A  G  C  Y  G  G  Y  R  R  F  C  E  G  D  V  V  G  P  *  I  P  G  A  R  G  *  S  R  D  R  R  P  G  F  S  *  R  Y  *  S  G  K  *  I  G  F  R  G  L  C  E  I  T  V  Q  S  G  S  V  C  C  I  G  L  F  C  I  H  H  H  *  K  C  T  S  V  I  K  I  F  K  F  Y  R  Y  N  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86233" stop="86823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIQYLLRPMSKEGSRRGVKWSWTSAFVGAAAAAATVMTLSSKPRDPDFHLISIDLTSFKLNFPVVDAELILTVHVTNPNVTSINYSSTEMSIFYSGDHLGSARVKAGSQPPRSCQVLRLPARLSGLQLAHHGKEFVADVAKREMLLDATVDIEGFAKVMWWDHKFRVHVDSHVTVDPVFLDVIDQENKSALEVFVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="89968" PGL_stop="96467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89968" e_stop="90098"/>
            <exon e_start="91302" e_stop="91350"/>
            <exon e_start="94358" e_stop="94449"/>
            <exon e_start="94556" e_stop="94707"/>
            <exon e_start="94830" e_stop="94876"/>
            <exon e_start="94976" e_stop="95009"/>
            <exon e_start="95269" e_stop="95435"/>
            <exon e_start="95888" e_stop="95984"/>
            <exon e_start="96084" e_stop="96467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.285" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89968" e_stop="90098" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.285">
            <gDNA_intron_boundary i_start="90099" i_stop="91301" i_length="1203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91302" e_stop="91350" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.840">
            <gDNA_intron_boundary i_start="91351" i_stop="94357" i_length="3007"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94358" e_stop="94449" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94450" i_stop="94555" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94556" e_stop="94707" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.953">
            <gDNA_intron_boundary i_start="94708" i_stop="94829" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94830" e_stop="94876" e_length="47"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.920">
            <gDNA_intron_boundary i_start="94877" i_stop="94975" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="94976" e_stop="95009" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.809">
            <gDNA_intron_boundary i_start="95010" i_stop="95268" i_length="259"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95269" e_stop="95435" e_length="167"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="95436" i_stop="95887" i_length="452"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="95888" e_stop="95984" e_length="97"/>
          </exon>
          <intron i_serial="8" don_prob="0.961" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95985" i_stop="96083" i_length="99"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="96084" e_stop="96467" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89968" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89976" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89984" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89988" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89990" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89991" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89992" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89992" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89994" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90004" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90005" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90009" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90009" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90009" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="94994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90032" stop="90098"/>
              <exon start="91302" stop="91350"/>
              <exon start="94358" stop="94449"/>
              <exon start="94556" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94641" stop="94707"/>
              <exon start="94830" stop="94876"/>
              <exon start="94976" stop="95009"/>
              <exon start="95269" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95405" stop="95435"/>
              <exon start="95888" stop="95984"/>
              <exon start="96084" stop="96423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACTTGCAGCTCATAGTGTAAGCTTCAAAGAGCCCAAAAATGGCGGAGAAGAATCGATTAGTCACCGTTGCTGCTTTGCAGTTCGCCTGTACCGACGATGTCTCCACCAACGTCGCTACCGCCGAGAG : ATTGGTTAGAGCTGCTCATCAGAAGGGTGCAAATATCATCCTCATACAG : GAGTTGTTCGAGGGCTATTACTTTTGTCAAGCACAAAAGGAGGAGTTCTTTCATCGAGCAAAACCATATCCGGGCCATCCAACCATTGTTAG : GATGCAGAATCTTGCAAAGGAGCTTGGAGTAGTTATTCCAGTTAGTTTCTTTGAAGAGGCAAATAATGCGCATTACAATTCTGTGGCTATAATTGATGCTGATGGCACAGATCTTGGACTTTACAGGAAGTCCCATATTCCTGATGGACCCG : GTTATCAGGAAAAGTATTACTTCAATCCCGGTGACACTGGTTTTAAG : GTATTCCAGACAAAATATGCAAAAATTGGAGTTG : CAATTTGCTGGGATCAGTGGTTTCCTGAGGCTGCTCGAGCTATGGCACTTCAAGGTGCAGAAGTATTGTTCTACCCTACTGCAATTGGTTCTGAACCTCAAGATGATGGACTTGATTCTCGGGATCACTGGAGGAGGGTGATGCAAGGACACGCTGGTGCTAATGTG : GTACCTTTAGTGGCGTCAAACCGCATTGGAAAGGAGATAATTGAGACAGAGCATGGGAATAGTGAGATAACATTCTACGGCTACTCTTTCATAGCAG : GCCCCACTGGGGAGTTGGTTGCAGCTGCCGGTGATAAAGAGGAAGCTGTTCTTGTAGCTCAGTTTGATCTGGACAAAATCAAGTCCAAAAGGCATGGTTGGGGGGTGTATCGTGATCGACGTCCTGATTTATATAAGGTTCTTTTGACGCTAGATGGCAGCAACCCAGTCAAGTGATTCAAGATGATCTAAGTACTGCAGATTCTCCTGCCTTTTTTTTTAAAAATTATAAGAATAAAAATATGAGGACTCAAATGAGAAATTTGTATTTGAGTTTTGTTGTAATGTAACTCGTTAATTTCTGTAATCTGCTGCATTCTACTTTTTATGTAAGGCAAAATTTGTTGAGTTTGAATCCTGCAACGTTTCATCAGTGCATCAATGT</gDNA_template>
            <first_frame> Q  N  L  Q  L  I  V  *  A  S  K  S  P  K  M  A  E  K  N  R  L  V  T  V  A  A  L  Q  F  A  C  T  D  D  V  S  T  N  V  A  T  A  E  R :   L  V  R  A  A  H  Q  K  G  A  N  I  I  L  I  Q  :  E  L  F  E  G  Y  Y  F  C  Q  A  Q  K  E  E  F  F  H  R  A  K  P  Y  P  G  H  P  T  I  V  R :   M  Q  N  L  A  K  E  L  G  V  V  I  P  V  S  F  F  E  E  A  N  N  A  H  Y  N  S  V  A  I  I  D  A  D  G  T  D  L  G  L  Y  R  K  S  H  I  P  D  G  P   : G  Y  Q  E  K  Y  Y  F  N  P  G  D  T  G  F  K  :  V  F  Q  T  K  Y  A  K  I  G  V   : A  I  C  W  D  Q  W  F  P  E  A  A  R  A  M  A  L  Q  G  A  E  V  L  F  Y  P  T  A  I  G  S  E  P  Q  D  D  G  L  D  S  R  D  H  W  R  R  V  M  Q  G  H  A  G  A  N  V  :  V  P  L  V  A  S  N  R  I  G  K  E  I  I  E  T  E  H  G  N  S  E  I  T  F  Y  G  Y  S  F  I  A   : G  P  T  G  E  L  V  A  A  A  G  D  K  E  E  A  V  L  V  A  Q  F  D  L  D  K  I  K  S  K  R  H  G  W  G  V  Y  R  D  R  R  P  D  L  Y  K  V  L  L  T  L  D  G  S  N  P  V  K  *  F  K  M  I  *  V  L  Q  I  L  L  P  F  F  L  K  I  I  R  I  K  I  *  G  L  K  *  E  I  C  I  *  V  L  L  *  C  N  S  L  I  S  V  I  C  C  I  L  L  F  M  *  G  K  I  C  *  V  *  I  L  Q  R  F  I  S  A  S  M  </first_frame>
            <second_frame>  K  T  C  S  S  *  C  K  L  Q  R  A  Q  K  W  R  R  R  I  D  *  S  P  L  L  L  C  S  S  P  V  P  T  M  S  P  P  T  S  L  P  P  R   : D  W  L  E  L  L  I  R  R  V  Q  I  S  S  S  Y  R :   S  C  S  R  A  I  T  F  V  K  H  K  R  R  S  S  F  I  E  Q  N  H  I  R  A  I  Q  P  L  L   : G  C  R  I  L  Q  R  S  L  E  *  L  F  Q  L  V  S  L  K  R  Q  I  M  R  I  T  I  L  W  L  *  L  M  L  M  A  Q  I  L  D  F  T  G  S  P  I  F  L  M  D  P  :  V  I  R  K  S  I  T  S  I  P  V  T  L  V  L  R :   Y  S  R  Q  N  M  Q  K  L  E  L  :  Q  F  A  G  I  S  G  F  L  R  L  L  E  L  W  H  F  K  V  Q  K  Y  C  S  T  L  L  Q  L  V  L  N  L  K  M  M  D  L  I  L  G  I  T  G  G  G  *  C  K  D  T  L  V  L  M  W :   Y  L  *  W  R  Q  T  A  L  E  R  R  *  L  R  Q  S  M  G  I  V  R  *  H  S  T  A  T  L  S  *  Q  :  A  P  L  G  S  W  L  Q  L  P  V  I  K  R  K  L  F  L  *  L  S  L  I  W  T  K  S  S  P  K  G  M  V  G  G  C  I  V  I  D  V  L  I  Y  I  R  F  F  *  R  *  M  A  A  T  Q  S  S  D  S  R  *  S  K  Y  C  R  F  S  C  L  F  F  *  K  L  *  E  *  K  Y  E  D  S  N  E  K  F  V  F  E  F  C  C  N  V  T  R  *  F  L  *  S  A  A  F  Y  F  L  C  K  A  K  F  V  E  F  E  S  C  N  V  S  S  V  H  Q  C </second_frame>
            <third_frame>   K  L  A  A  H  S  V  S  F  K  E  P  K  N  G  G  E  E  S  I  S  H  R  C  C  F  A  V  R  L  Y  R  R  C  L  H  Q  R  R  Y  R  R  E  :  I  G  *  S  C  S  S  E  G  C  K  Y  H  P  H  T   : G  V  V  R  G  L  L  L  L  S  S  T  K  G  G  V  L  S  S  S  K  T  I  S  G  P  S  N  H  C  *  :  D  A  E  S  C  K  G  A  W  S  S  Y  S  S  *  F  L  *  R  G  K  *  C  A  L  Q  F  C  G  Y  N  *  C  *  W  H  R  S  W  T  L  Q  E  V  P  Y  S  *  W  T  R :   L  S  G  K  V  L  L  Q  S  R  *  H  W  F  *   : G  I  P  D  K  I  C  K  N  W  S  C :   N  L  L  G  S  V  V  S  *  G  C  S  S  Y  G  T  S  R  C  R  S  I  V  L  P  Y  C  N  W  F  *  T  S  R  *  W  T  *  F  S  G  S  L  E  E  G  D  A  R  T  R  W  C  *  C   : G  T  F  S  G  V  K  P  H  W  K  G  D  N  *  D  R  A  W  E  *  *  D  N  I  L  R  L  L  F  H  S  R :   P  H  W  G  V  G  C  S  C  R  *  *  R  G  S  C  S  C  S  S  V  *  S  G  Q  N  Q  V  Q  K  A  W  L  G  G  V  S  *  S  T  S  *  F  I  *  G  S  F  D  A  R  W  Q  Q  P  S  Q  V  I  Q  D  D  L  S  T  A  D  S  P  A  F  F  F  K  N  Y  K  N  K  N  M  R  T  Q  M  R  N  L  Y  L  S  F  V  V  M  *  L  V  N  F  C  N  L  L  H  S  T  F  Y  V  R  Q  N  L  L  S  L  N  P  A  T  F  H  Q  C  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89992" stop="90098"/>
                    <exon start="91302" stop="91350"/>
                    <exon start="94358" stop="94449"/>
                    <exon start="94556" stop="94707"/>
                    <exon start="94830" stop="94876"/>
                    <exon start="94976" stop="95009"/>
                    <exon start="95269" stop="95435"/>
                    <exon start="95888" stop="95984"/>
                    <exon start="96084" stop="96259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASKSPKMAEKNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFFHRAKPYPGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKYYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGNSEITFYGYSFIAGPTGELVAAAGDKEEAVLVAQFDLDKIKSKRHGWGVYRDRRPDLYKVLLTLDGSNPVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="97131" PGL_stop="96082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97131" e_stop="97108"/>
            <exon e_start="97044" e_stop="97035"/>
            <exon e_start="96439" e_stop="96082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.969" e_score="0.542"/>
          <exon-intron don_prob="0.000" acc_prob="0.927" e_score="0.600"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.542">
            <gDNA_exon_boundary e_start="97131" e_stop="97108" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.969">
            <gDNA_intron_boundary i_start="97107" i_stop="97045" i_length="63"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="97044" e_stop="97035" e_length="10"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="97034" i_stop="96440" i_length="595"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="96439" e_stop="96082" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97131" stop="97108"/>
              <exon start="97044" stop="97035"/>
              <exon start="96439" stop="96082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTATCTAAAGTTCTCTGAAAA : ATTATTTGTG : GATTCAAACTCAACAAATTTTGCCTTACATAAAAAGTAGAATGCAGCAGATTACAGAAATTAACGAGTTACATTACAACAAAACTCAAATACAAATTTCTCATTTGAGTCCTCATATTTTTATTCTTATAATTTTTAAAAAAAAAGGCAGGAGAATCTGCAGTACTTAGATCATCTTGAATCACTTGACTGGGTTGCTGCCATCTAGCGTCAAAAGAACCTTATATAAATCAGGACGTCGATCACGATACACCCCCCAACCATGCCTTTTGGACTTGATTTTGTCCAGATCAAACTGAGCTACAAGAACAGCTTCCTCTTTATCACCGGCAGCTGCAACCAACTCCCCAGTGGGGCCT</gDNA_template>
            <first_frame> K  L  S  K  V  L  *  K  :  I  I  C   : G  F  K  L  N  K  F  C  L  T  *  K  V  E  C  S  R  L  Q  K  L  T  S  Y  I  T  T  K  L  K  Y  K  F  L  I  *  V  L  I  F  L  F  L  *  F  L  K  K  K  A  G  E  S  A  V  L  R  S  S  *  I  T  *  L  G  C  C  H  L  A  S  K  E  P  Y  I  N  Q  D  V  D  H  D  T  P  P  N  H  A  F  W  T  *  F  C  P  D  Q  T  E  L  Q  E  Q  L  P  L  Y  H  R  Q  L  Q  P  T  P  Q  W  G   </first_frame>
            <second_frame>  N  Y  L  K  F  S  E  K :   L  F  V  :  D  S  N  S  T  N  F  A  L  H  K  K  *  N  A  A  D  Y  R  N  *  R  V  T  L  Q  Q  N  S  N  T  N  F  S  F  E  S  S  Y  F  Y  S  Y  N  F  *  K  K  R  Q  E  N  L  Q  Y  L  D  H  L  E  S  L  D  W  V  A  A  I  *  R  Q  K  N  L  I  *  I  R  T  S  I  T  I  H  P  P  T  M  P  F  G  L  D  F  V  Q  I  K  L  S  Y  K  N  S  F  L  F  I  T  G  S  C  N  Q  L  P  S  G  A  </second_frame>
            <third_frame>   I  I  *  S  S  L  K   : N  Y  L  W :   I  Q  T  Q  Q  I  L  P  Y  I  K  S  R  M  Q  Q  I  T  E  I  N  E  L  H  Y  N  K  T  Q  I  Q  I  S  H  L  S  P  H  I  F  I  L  I  I  F  K  K  K  G  R  R  I  C  S  T  *  I  I  L  N  H  L  T  G  L  L  P  S  S  V  K  R  T  L  Y  K  S  G  R  R  S  R  Y  T  P  Q  P  C  L  L  D  L  I  L  S  R  S  N  *  A  T  R  T  A  S  S  L  S  P  A  A  A  T  N  S  P  V  G  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="100528" PGL_stop="102202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100528" e_stop="100547"/>
            <exon e_start="101686" e_stop="102202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.750"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="100528" e_stop="100547" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100548" i_stop="101685" i_length="1138"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="101686" e_stop="102202" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100528" stop="100547"/>
              <exon start="101686" stop="102202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544567" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTTTTGGTATTTTTTTT : GTATACAATGAAGGAAATAGACATCCATCCACATTGTGCAAGTGAAGATCAAATGATATTCGCGTTCTAGTTTTTAGAAAAGCAGAAAGTATAATGTACACATCCAAACTGTAACCAGTTAAACAAAATCAACCAAAGTAAACTAGATCAACATACATGAACTATTATAGCATTCACATTTTTTATCACAACCAAACAGAAACTGTTACCATCTTAGTCAGCACAGAAAGCCTGCTCAGTTCAGTTCTCTATTCACCGCCAAGCTTCAGTCCTCTCTGTCATTGAATTTATACGGATCAAGTTGCTTATTCCTTTTGATTTACTGTCATTTCCCACAGACTGAACCACGGTTGACTCTAGATCAAGTTTCACAACATCCTTTGTCTGATTAGAATCACTCGATTGGCCTATCCTTTGTGTGACCTCTTCAAGATTTGGAGTTTTTGTCACACAGGCTTTTCTTGCCTTGGTATTAACATGAATAGGAGTTTCACAAGACACACTGTCATCGGATTCC</gDNA_template>
            <first_frame> M  F  L  V  F  F  L :   Y  T  M  K  E  I  D  I  H  P  H  C  A  S  E  D  Q  M  I  F  A  F  *  F  L  E  K  Q  K  V  *  C  T  H  P  N  C  N  Q  L  N  K  I  N  Q  S  K  L  D  Q  H  T  *  T  I  I  A  F  T  F  F  I  T  T  K  Q  K  L  L  P  S  *  S  A  Q  K  A  C  S  V  Q  F  S  I  H  R  Q  A  S  V  L  S  V  I  E  F  I  R  I  K  L  L  I  P  F  D  L  L  S  F  P  T  D  *  T  T  V  D  S  R  S  S  F  T  T  S  F  V  *  L  E  S  L  D  W  P  I  L  C  V  T  S  S  R  F  G  V  F  V  T  Q  A  F  L  A  L  V  L  T  *  I  G  V  S  Q  D  T  L  S  S  D  S </first_frame>
            <second_frame>  C  F  W  Y  F  F   : C  I  Q  *  R  K  *  T  S  I  H  I  V  Q  V  K  I  K  *  Y  S  R  S  S  F  *  K  S  R  K  Y  N  V  H  I  Q  T  V  T  S  *  T  K  S  T  K  V  N  *  I  N  I  H  E  L  L  *  H  S  H  F  L  S  Q  P  N  R  N  C  Y  H  L  S  Q  H  R  K  P  A  Q  F  S  S  L  F  T  A  K  L  Q  S  S  L  S  L  N  L  Y  G  S  S  C  L  F  L  L  I  Y  C  H  F  P  Q  T  E  P  R  L  T  L  D  Q  V  S  Q  H  P  L  S  D  *  N  H  S  I  G  L  S  F  V  *  P  L  Q  D  L  E  F  L  S  H  R  L  F  L  P  W  Y  *  H  E  *  E  F  H  K  T  H  C  H  R  I   </second_frame>
            <third_frame>   V  F  G  I  F  F  :  V  Y  N  E  G  N  R  H  P  S  T  L  C  K  *  R  S  N  D  I  R  V  L  V  F  R  K  A  E  S  I  M  Y  T  S  K  L  *  P  V  K  Q  N  Q  P  K  *  T  R  S  T  Y  M  N  Y  Y  S  I  H  I  F  Y  H  N  Q  T  E  T  V  T  I  L  V  S  T  E  S  L  L  S  S  V  L  Y  S  P  P  S  F  S  P  L  C  H  *  I  Y  T  D  Q  V  A  Y  S  F  *  F  T  V  I  S  H  R  L  N  H  G  *  L  *  I  K  F  H  N  I  L  C  L  I  R  I  T  R  L  A  Y  P  L  C  D  L  F  K  I  W  S  F  C  H  T  G  F  S  C  L  G  I  N  M  N  R  S  F  T  R  H  T  V  I  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101856" stop="102077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSHFLSQPNRNCYHLSQHRKPAQFSSLFTAKLQSSLSLNLYGSSCLFLLIYCHFPQTEPRLTLDQVSQHPLSD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="106900" PGL_stop="101733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106900" e_stop="106779"/>
            <exon e_start="104815" e_stop="104695"/>
            <exon e_start="104576" e_stop="104457"/>
            <exon e_start="103097" e_stop="102867"/>
            <exon e_start="102513" e_stop="101733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106900" e_stop="106779" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.750">
            <gDNA_intron_boundary i_start="106778" i_stop="104816" i_length="1963"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104815" e_stop="104695" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.944" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104694" i_stop="104577" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104576" e_stop="104457" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104456" i_stop="103098" i_length="1359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="103097" e_stop="102867" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.722" acc_prob="0.982">
            <gDNA_intron_boundary i_start="102866" i_stop="102514" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="102513" e_stop="101733" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106900" stop="106779"/>
              <exon start="104815" stop="104695"/>
              <exon start="104576" stop="104457"/>
              <exon start="103097" stop="102867"/>
              <exon start="102513" stop="102361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102471" stop="101733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320200" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATTGGATGGCCTACTAATGTGCGTCATGTTGCACATGTTACCTTTGATAGGTTCAATGGATTTTTGGGTCTCCCTGTTGAATTTGAGCCAGAAGTTTCCAGAAGGGCCCCCAGTGCTAG : TACCACTGTATTTGGAGTGTCAACGGAGTCCATGCAATTGTCTTTTGACTCCCGTGGTAATAGTGTTCCAACTATTCTACTTCTAATGCAAAGGCGTTTGTATGCTCAAGGAGGTCTACAG : GCAGAAGGGATTTTCAGAATAAATGCTGAAAACAGCGAGGAGGAGCTGGTTAGGGAGCAATTAAACCGTGGAATAATTCCTGATGGCATTGATGTACATTGTCTGGCAGGTCTCATTAAG : GCTTGGTTCAGGGAACTCCCAAGTGGGGTGTTGGATACCCTTTCTCCTGAGCAGGTCATGCAATGCCAGTCAGAAGAGGACTGTACTGCACTCGTGAGACTTCTGCCACAGACAGAAGCTGCTCTGCTGGATTGGGCTATCAATCTCATGGCTGATGTTGTCCTGGAGGAACACCGAAACAAGATGAATTCGCGCAATGTCGCAATGGTGTTTGCTCCTAATATGACACAG : ATGGCAGATCCATTGACTGCACTGATGTATGCTGTTCAAGTAATGAATTTCTTGAGGACACTCATCGAAAAGACTTTAAAAGATAGAGAAGATTCCCTTGTTGAACCAGATTCTGCCTCTAACCTAGACCGGCCTGATGAGTATGGTCATCAAAGTCCACCACAATTCTCTCTGGAGAACTCCGATGAATCAAACGAACTGACTGAGCAGGTGTTCACTGTTGAAGAACCTGATTCAGCCAGCGCTTCTGAATCTAATAGAGTAGATAACATCACTGATGATGAATATCTTAGTTATGCAACTTCTTCAGAGGAATCCGATGACAGTGTGTCTTGTGAAACTCCTATTCATGTTAATACCAAGGCAAGAAAAGCCTGTGTGACAAAAACTCCAAATCTTGAAGAGGTCACACAAAGGATAGGCCAATCGAGTGATTCTAATCAGACAAAGGATGTTGTGAAACTTGATCTAGAGTCAACCGTGGTTCAGTCTGTGGGAAATGACAGTAAATCAAAAGGAATAAGCAACTTGATCCGTATAAATTCAATGACAGAGAGGACTGAAGCTTGGCGGTGAATAGAGAACTGAACTGAGCAGGCTTTCTGTGCTGACTAAGATGGTAACAGTTTCTGTTTGGTTGTGATAAAAAATGTGAATGCTATAATAGTTCATGTATGTTGATCTAGTTTACTTTGGTTGATTTTGTTTAACTGGTTACAGTTTGGATGTGTACATTATACTTTCTGCTTTTCTAAAAACTAGAACGCGAATATCATTTGAT</gDNA_template>
            <first_frame> E  I  G  W  P  T  N  V  R  H  V  A  H  V  T  F  D  R  F  N  G  F  L  G  L  P  V  E  F  E  P  E  V  S  R  R  A  P  S  A  S :   T  T  V  F  G  V  S  T  E  S  M  Q  L  S  F  D  S  R  G  N  S  V  P  T  I  L  L  L  M  Q  R  R  L  Y  A  Q  G  G  L  Q  :  A  E  G  I  F  R  I  N  A  E  N  S  E  E  E  L  V  R  E  Q  L  N  R  G  I  I  P  D  G  I  D  V  H  C  L  A  G  L  I  K  :  A  W  F  R  E  L  P  S  G  V  L  D  T  L  S  P  E  Q  V  M  Q  C  Q  S  E  E  D  C  T  A  L  V  R  L  L  P  Q  T  E  A  A  L  L  D  W  A  I  N  L  M  A  D  V  V  L  E  E  H  R  N  K  M  N  S  R  N  V  A  M  V  F  A  P  N  M  T  Q  :  M  A  D  P  L  T  A  L  M  Y  A  V  Q  V  M  N  F  L  R  T  L  I  E  K  T  L  K  D  R  E  D  S  L  V  E  P  D  S  A  S  N  L  D  R  P  D  E  Y  G  H  Q  S  P  P  Q  F  S  L  E  N  S  D  E  S  N  E  L  T  E  Q  V  F  T  V  E  E  P  D  S  A  S  A  S  E  S  N  R  V  D  N  I  T  D  D  E  Y  L  S  Y  A  T  S  S  E  E  S  D  D  S  V  S  C  E  T  P  I  H  V  N  T  K  A  R  K  A  C  V  T  K  T  P  N  L  E  E  V  T  Q  R  I  G  Q  S  S  D  S  N  Q  T  K  D  V  V  K  L  D  L  E  S  T  V  V  Q  S  V  G  N  D  S  K  S  K  G  I  S  N  L  I  R  I  N  S  M  T  E  R  T  E  A  W  R  *  I  E  N  *  T  E  Q  A  F  C  A  D  *  D  G  N  S  F  C  L  V  V  I  K  N  V  N  A  I  I  V  H  V  C  *  S  S  L  L  W  L  I  L  F  N  W  L  Q  F  G  C  V  H  Y  T  F  C  F  S  K  N  *  N  A  N  I  I  *  </first_frame>
            <second_frame>  R  L  D  G  L  L  M  C  V  M  L  H  M  L  P  L  I  G  S  M  D  F  W  V  S  L  L  N  L  S  Q  K  F  P  E  G  P  P  V  L   : V  P  L  Y  L  E  C  Q  R  S  P  C  N  C  L  L  T  P  V  V  I  V  F  Q  L  F  Y  F  *  C  K  G  V  C  M  L  K  E  V  Y  R :   Q  K  G  F  S  E  *  M  L  K  T  A  R  R  S  W  L  G  S  N  *  T  V  E  *  F  L  M  A  L  M  Y  I  V  W  Q  V  S  L  R :   L  G  S  G  N  S  Q  V  G  C  W  I  P  F  L  L  S  R  S  C  N  A  S  Q  K  R  T  V  L  H  S  *  D  F  C  H  R  Q  K  L  L  C  W  I  G  L  S  I  S  W  L  M  L  S  W  R  N  T  E  T  R  *  I  R  A  M  S  Q  W  C  L  L  L  I  *  H  R :   W  Q  I  H  *  L  H  *  C  M  L  F  K  *  *  I  S  *  G  H  S  S  K  R  L  *  K  I  E  K  I  P  L  L  N  Q  I  L  P  L  T  *  T  G  L  M  S  M  V  I  K  V  H  H  N  S  L  W  R  T  P  M  N  Q  T  N  *  L  S  R  C  S  L  L  K  N  L  I  Q  P  A  L  L  N  L  I  E  *  I  T  S  L  M  M  N  I  L  V  M  Q  L  L  Q  R  N  P  M  T  V  C  L  V  K  L  L  F  M  L  I  P  R  Q  E  K  P  V  *  Q  K  L  Q  I  L  K  R  S  H  K  G  *  A  N  R  V  I  L  I  R  Q  R  M  L  *  N  L  I  *  S  Q  P  W  F  S  L  W  E  M  T  V  N  Q  K  E  *  A  T  *  S  V  *  I  Q  *  Q  R  G  L  K  L  G  G  E  *  R  T  E  L  S  R  L  S  V  L  T  K  M  V  T  V  S  V  W  L  *  *  K  M  *  M  L  *  *  F  M  Y  V  D  L  V  Y  F  G  *  F  C  L  T  G  Y  S  L  D  V  Y  I  I  L  S  A  F  L  K  T  R  T  R  I  S  F  D </second_frame>
            <third_frame>   D  W  M  A  Y  *  C  A  S  C  C  T  C  Y  L  *  *  V  Q  W  I  F  G  S  P  C  *  I  *  A  R  S  F  Q  K  G  P  Q  C  *  :  Y  H  C  I  W  S  V  N  G  V  H  A  I  V  F  *  L  P  W  *  *  C  S  N  Y  S  T  S  N  A  K  A  F  V  C  S  R  R  S  T   : G  R  R  D  F  Q  N  K  C  *  K  Q  R  G  G  A  G  *  G  A  I  K  P  W  N  N  S  *  W  H  *  C  T  L  S  G  R  S  H  *   : G  L  V  Q  G  T  P  K  W  G  V  G  Y  P  F  S  *  A  G  H  A  M  P  V  R  R  G  L  Y  C  T  R  E  T  S  A  T  D  R  S  C  S  A  G  L  G  Y  Q  S  H  G  *  C  C  P  G  G  T  P  K  Q  D  E  F  A  Q  C  R  N  G  V  C  S  *  Y  D  T   : D  G  R  S  I  D  C  T  D  V  C  C  S  S  N  E  F  L  E  D  T  H  R  K  D  F  K  R  *  R  R  F  P  C  *  T  R  F  C  L  *  P  R  P  A  *  *  V  W  S  S  K  S  T  T  I  L  S  G  E  L  R  *  I  K  R  T  D  *  A  G  V  H  C  *  R  T  *  F  S  Q  R  F  *  I  *  *  S  R  *  H  H  *  *  *  I  S  *  L  C  N  F  F  R  G  I  R  *  Q  C  V  L  *  N  S  Y  S  C  *  Y  Q  G  K  K  S  L  C  D  K  N  S  K  S  *  R  G  H  T  K  D  R  P  I  E  *  F  *  S  D  K  G  C  C  E  T  *  S  R  V  N  R  G  S  V  C  G  K  *  Q  *  I  K  R  N  K  Q  L  D  P  Y  K  F  N  D  R  E  D  *  S  L  A  V  N  R  E  L  N  *  A  G  F  L  C  *  L  R  W  *  Q  F  L  F  G  C  D  K  K  C  E  C  Y  N  S  S  C  M  L  I  *  F  T  L  V  D  F  V  *  L  V  T  V  W  M  C  T  L  Y  F  L  L  F  *  K  L  E  R  E  Y  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106900" stop="106779"/>
                    <exon start="104815" stop="104695"/>
                    <exon start="104576" stop="104457"/>
                    <exon start="103097" stop="102867"/>
                    <exon start="102513" stop="101938"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVSRRAPSASTTVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYAQGGLQAEGIFRINAENSEEELVREQLNRGIIPDGIDVHCLAGLIKAWFRELPSGVLDTLSPEQVMQCQSEEDCTALVRLLPQTEAALLDWAINLMADVVLEEHRNKMNSRNVAMVFAPNMTQMADPLTALMYAVQVMNFLRTLIEKTLKDREDSLVEPDSASNLDRPDEYGHQSPPQFSLENSDESNELTEQVFTVEEPDSASASESNRVDNITDDEYLSYATSSEESDDSVSCETPIHVNTKARKACVTKTPNLEEVTQRIGQSSDSNQTKDVVKLDLESTVVQSVGNDSKSKGISNLIRINSMTERTEAWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="107594" PGL_stop="106931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107594" e_stop="106931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="107594" e_stop="106931" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107594" stop="106931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107593" stop="106982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAATCAAGAATCTATATATATATATATATAAGAAATTTGAAGAAAATATAAACAAATATAATCTTGAAATCCAACTTCACAGCAAAGCATTTTTCCTTTTTTTATCTCTATATGTAGTGTTAAAAAGACTGTGTCTTTGTTGCTTTTTCAACGCGCCATTAAAAGGGCTTGTTCAGAAAACAATAAACAATATGCTAGAGTTCATGATTCTCACGTCCCACATCTCTTAACTTGAGAAAAATTCAATCTTTAACCCCATTTTTCCATTTTTCTTGAATTAGTCTTTACTGGGGTTTGTTGATTCTTGAGATATCAATCCAAGAATCTGGAAAAAAATCATTTTTTTATTGGATTCTTGGTACATTTTTATAGTCTGGTGTAAAGGGTAACCATGACAGAAGTCCTCCACTCTTCTTCTCCTTCCCCTTCCTCTCCTTCAATATCTACACCTACCCACAATGGGACATTGTTTGTAGAAGAAATTGGGGGTTCTGAGATTGCTGTTTGTGATTCTGAGGAAGAAATAGGTGAAGGGGAAGAAGAAGAAGGAGAAGAAGGGGAAAAAGGGAGAAATCAAGAAAGGGATCACTTGTCTTTATTGGCTCTTTTGGTGACATTGTTTAGAAAGAGTTTTTGGTTAGCTTGCAAAACGGATAGGGGA</gDNA_template>
            <first_frame> P  K  S  R  I  Y  I  Y  I  Y  I  R  N  L  K  K  I  *  T  N  I  I  L  K  S  N  F  T  A  K  H  F  S  F  F  Y  L  Y  M  *  C  *  K  D  C  V  F  V  A  F  S  T  R  H  *  K  G  L  F  R  K  Q  *  T  I  C  *  S  S  *  F  S  R  P  T  S  L  N  L  R  K  I  Q  S  L  T  P  F  F  H  F  S  *  I  S  L  Y  W  G  L  L  I  L  E  I  S  I  Q  E  S  G  K  K  S  F  F  Y  W  I  L  G  T  F  L  *  S  G  V  K  G  N  H  D  R  S  P  P  L  F  F  S  F  P  F  L  S  F  N  I  Y  T  Y  P  Q  W  D  I  V  C  R  R  N  W  G  F  *  D  C  C  L  *  F  *  G  R  N  R  *  R  G  R  R  R  R  R  R  R  G  K  R  E  K  S  R  K  G  S  L  V  F  I  G  S  F  G  D  I  V  *  K  E  F  L  V  S  L  Q  N  G  *  G  </first_frame>
            <second_frame>  P  N  Q  E  S  I  Y  I  Y  I  *  E  I  *  R  K  Y  K  Q  I  *  S  *  N  P  T  S  Q  Q  S  I  F  P  F  F  I  S  I  C  S  V  K  K  T  V  S  L  L  L  F  Q  R  A  I  K  R  A  C  S  E  N  N  K  Q  Y  A  R  V  H  D  S  H  V  P  H  L  L  T  *  E  K  F  N  L  *  P  H  F  S  I  F  L  E  L  V  F  T  G  V  C  *  F  L  R  Y  Q  S  K  N  L  E  K  N  H  F  F  I  G  F  L  V  H  F  Y  S  L  V  *  R  V  T  M  T  E  V  L  H  S  S  S  P  S  P  S  S  P  S  I  S  T  P  T  H  N  G  T  L  F  V  E  E  I  G  G  S  E  I  A  V  C  D  S  E  E  E  I  G  E  G  E  E  E  E  G  E  E  G  E  K  G  R  N  Q  E  R  D  H  L  S  L  L  A  L  L  V  T  L  F  R  K  S  F  W  L  A  C  K  T  D  R  G </second_frame>
            <third_frame>   Q  I  K  N  L  Y  I  Y  I  Y  K  K  F  E  E  N  I  N  K  Y  N  L  E  I  Q  L  H  S  K  A  F  F  L  F  L  S  L  Y  V  V  L  K  R  L  C  L  C  C  F  F  N  A  P  L  K  G  L  V  Q  K  T  I  N  N  M  L  E  F  M  I  L  T  S  H  I  S  *  L  E  K  N  S  I  F  N  P  I  F  P  F  F  L  N  *  S  L  L  G  F  V  D  S  *  D  I  N  P  R  I  W  K  K  I  I  F  L  L  D  S  W  Y  I  F  I  V  W  C  K  G  *  P  *  Q  K  S  S  T  L  L  L  L  P  L  P  L  L  Q  Y  L  H  L  P  T  M  G  H  C  L  *  K  K  L  G  V  L  R  L  L  F  V  I  L  R  K  K  *  V  K  G  K  K  K  K  E  K  K  G  K  K  G  E  I  K  K  G  I  T  C  L  Y  W  L  F  W  *  H  C  L  E  R  V  F  G  *  L  A  K  R  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107209" stop="106931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVTMTEVLHSSSPSPSSPSISTPTHNGTLFVEEIGGSEIAVCDSEEEIGEGEEEEGEEGEKGRNQERDHLSLLALLVTLFRKSFWLACKTDRG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107592" stop="107362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIKNLYIYIYKKFEENINKYNLEIQLHSKAFFLFLSLYVVLKRLCLCCFFNAPLKGLVQKTINNMLEFMILTSHIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="117079" PGL_stop="110267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113475" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="113475" e_stop="113340" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112094" e_stop="111673" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113475" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113474" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113465" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113460" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113450" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113434" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113369" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112087" stop="111679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGT</gDNA_template>
            <first_frame> V  N  D  R  N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  M  C  C  F  F  D  M  I  T  S  Y  Y  S  V  R </first_frame>
            <second_frame>  L  M  T  G  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I  C  V  A  S  L  T  *  S  P  R  I  T  R  F   </second_frame>
            <third_frame>   *  *  Q  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  V  L  L  L  *  H  D  H  L  V  L  L  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113474" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTGIFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111996" stop="111673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPQLWCSSWTDHWCWCFGLVPNVKGQEDGRSTGLKYLLISELLKRPKNKANSCFVNSILISFPSVWFSTSWMYKNLQNWAYILQLLNWMTFYMCCFFDMITSYYSVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="117079" e_stop="117041"/>
            <exon e_start="113464" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117079" e_stop="117041" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113464" e_stop="113340" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112094" e_stop="111673" e_length="422"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117079" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117068" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117059" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113460" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113450" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113434" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113369" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112087" stop="111679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552834" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCGTCATTTGTGATTCACACACCGAAACAACAGAG : GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTCGTATTACTCGGTTCGT</gDNA_template>
            <first_frame> Q  S  V  I  C  D  S  H  T  E  T  T  E  :  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  V  L  L  L  *  H  D  H  L  V  L  L  G  S  </first_frame>
            <second_frame>  K  A  S  F  V  I  H  T  P  K  Q  Q  R :   N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  M  C  C  F  F  D  M  I  T  S  Y  Y  S  V  R </second_frame>
            <third_frame>   K  R  H  L  *  F  T  H  R  N  N  R   : G  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I  C  V  A  S  L  T  *  S  P  R  I  T  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117062" stop="117041"/>
                    <exon start="113464" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTHRNNRGIFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111996" stop="111673"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPQLWCSSWTDHWCWCFGLVPNVKGQEDGRSTGLKYLLISELLKRPKNKANSCFVNSILISFPSVWFSTSWMYKNLQNWAYILQLLNWMTFYMCCFFDMITSYYSVR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="113474" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111716"/>
            <exon e_start="111121" e_stop="111058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.609"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113474" e_stop="113340" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="112094" e_stop="111716" e_length="379"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111715" i_stop="111122" i_length="594"/>
          </intron>
          <exon e_serial="4" e_score="0.609">
            <gDNA_exon_boundary e_start="111121" e_stop="111058" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113474" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111716"/>
              <exon start="111121" stop="111058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285189" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAATGACAGGAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATAT : ATAAAAAATAATAATAATTAGGCATATGCTACAAGCAGAACATTATAATAAAAGCAAATGGAAT</gDNA_template>
            <first_frame> L  M  T  G  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I   : Y  K  K  *  *  *  L  G  I  C  Y  K  Q  N  I  I  I  K  A  N  G   </first_frame>
            <second_frame>  *  *  Q  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  :  I  K  N  N  N  N  *  A  Y  A  T  S  R  T  L  *  *  K  Q  M  E  </second_frame>
            <third_frame>   N  D  R  N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  I :   *  K  I  I  I  I  R  H  M  L  Q  A  E  H  Y  N  K  S  K  W  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113474" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTGIFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="113542" e_stop="113538"/>
            <exon e_start="113464" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111696"/>
            <exon e_start="110284" e_stop="110267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.386" acc_prob="0.999" e_score="0.600"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="0.997"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="113542" e_stop="113538" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.386" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113537" i_stop="113465" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113464" e_stop="113340" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="112094" e_stop="111696" e_length="399"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="111695" i_stop="110285" i_length="1411"/>
          </intron>
          <exon e_serial="5" e_score="0.722">
            <gDNA_exon_boundary e_start="110284" e_stop="110267" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113542" stop="113538"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111696"/>
              <exon start="110284" stop="110267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113434" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAT : GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGA : ATAATAAAAGGATAAAAA</gDNA_template>
            <first_frame> W  M :   N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  M  C  C  F  F  D  M   : N  N  K  R  I  K  </first_frame>
            <second_frame>  G   : *  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I  C  V  A  S  L  T  *  :  I  I  K  G  *  K </second_frame>
            <third_frame>   D  :  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  V  L  L  L  *  H  E :   *  *  K  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113462" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111996" stop="111696"/>
                    <exon start="110284" stop="110268"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPQLWCSSWTDHWCWCFGLVPNVKGQEDGRSTGLKYLLISELLKRPKNKANSCFVNSILISFPSVWFSTSWMYKNLQNWAYILQLLNWMTFYMCCFFDMNNKRIK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="112096" e_stop="111689"/>
            <exon e_start="111021" e_stop="110990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.456" acc_prob="0.000" e_score="0.961"/>
          <exon-only e_score="0.656"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="112096" e_stop="111689" e_length="408"/>
          </exon>
          <intron i_serial="1" don_prob="0.456" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111688" i_stop="111022" i_length="667"/>
          </intron>
          <exon e_serial="2" e_score="0.656">
            <gDNA_exon_boundary e_start="111021" e_stop="110990" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112096" stop="111689"/>
              <exon start="111021" stop="110990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267693" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACAGTATCCTAATCTCTTTTCCTTCTGTATGGTTTTCCACCAGCTGGATGTACAAAAATCTCCAGAACTGGGCGTACATTTTACAACTGCTGAACTGGATGACGTTCTATATGTGTTGCTTCTTTGACATGATCACCTC : AGAAAAGAAATTACAAAATGCAGTTGCAAGTT</gDNA_template>
            <first_frame> R  V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q  Y  P  N  L  F  S  F  C  M  V  F  H  Q  L  D  V  Q  K  S  P  E  L  G  V  H  F  T  T  A  E  L  D  D  V  L  Y  V  L  L  L  *  H  D  H  L  :  R  K  E  I  T  K  C  S  C  K   </first_frame>
            <second_frame>  G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N  S  I  L  I  S  F  P  S  V  W  F  S  T  S  W  M  Y  K  N  L  Q  N  W  A  Y  I  L  Q  L  L  N  W  M  T  F  Y  M  C  C  F  F  D  M  I  T  S :   E  K  K  L  Q  N  A  V  A  S  </second_frame>
            <third_frame>   G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  V  S  *  S  L  F  L  L  Y  G  F  P  P  A  G  C  T  K  I  S  R  T  G  R  T  F  Y  N  C  *  T  G  *  R  S  I  C  V  A  S  L  T  *  S  P   : Q  K  R  N  Y  K  M  Q  L  Q  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111996" stop="111689"/>
                    <exon start="111021" stop="110991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPQLWCSSWTDHWCWCFGLVPNVKGQEDGRSTGLKYLLISELLKRPKNKANSCFVNSILISFPSVWFSTSWMYKNLQNWAYILQLLNWMTFYMCCFFDMITSEKKLQNAVAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="117067" e_stop="117041"/>
            <exon e_start="113464" e_stop="113340"/>
            <exon e_start="112830" e_stop="112792"/>
            <exon e_start="112094" e_stop="111825"/>
            <exon e_start="110284" e_stop="110273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.963"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.994" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="117067" e_stop="117041" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="117040" i_stop="113465" i_length="3576"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113464" e_stop="113340" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113339" i_stop="112831" i_length="509"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112830" e_stop="112792" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.947">
            <gDNA_intron_boundary i_start="112791" i_stop="112095" i_length="697"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="112094" e_stop="111825" e_length="270"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.994">
            <gDNA_intron_boundary i_start="111824" i_stop="110285" i_length="1540"/>
          </intron>
          <exon e_serial="5" e_score="0.667">
            <gDNA_exon_boundary e_start="110284" e_stop="110273" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117067" stop="117041"/>
              <exon start="113464" stop="113340"/>
              <exon start="112830" stop="112792"/>
              <exon start="112094" stop="111825"/>
              <exon start="110284" stop="110273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745164" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGATTCACACACCGAAACAACAGAG : GAATATTTGAGAAGAAATTTGAGATGGCAGCCAGAAATGCTTTCAGATATGTTTCTCGTAGGCTCTCTAGCAGTGGCAAGGTATTAAGTGAGGAGGAAAAAGCTGCTGAAAATGTCTACATCAAG : AAAATGGAGAAAGAGAAGCTGGAGAAGCTTGCTCGCCAG : GGTCCCAAGCCAGGAGAACAAGCTGCAGGTGGCTCAGGGTCAGTACCTGATGCTGCATCGAGTGCCCAGGCCTCTTCAACATCCAGAGTATCAGATGACAAATACCGCAACTATGGTGTTCTAGCTGGACTGATCACTGGTGTTGGTGCTTTGGGTTGGTACCTAATGTCAAAGGACAAGAAGACGGAAGAAGTACAGGATTGAAGTATCTCCTTATTAGCGAACTCCTTAAAAGACCAAAAAATAAAGCAAACTCGTGTTTCGTAAACA : ATAATAAAAGGA</gDNA_template>
            <first_frame> C  D  S  H  T  E  T  T  E  :  E  Y  L  R  R  N  L  R  W  Q  P  E  M  L  S  D  M  F  L  V  G  S  L  A  V  A  R  Y  *  V  R  R  K  K  L  L  K  M  S  T  S  R :   K  W  R  K  R  S  W  R  S  L  L  A  R :   V  P  S  Q  E  N  K  L  Q  V  A  Q  G  Q  Y  L  M  L  H  R  V  P  R  P  L  Q  H  P  E  Y  Q  M  T  N  T  A  T  M  V  F  *  L  D  *  S  L  V  L  V  L  W  V  G  T  *  C  Q  R  T  R  R  R  K  K  Y  R  I  E  V  S  P  Y  *  R  T  P  *  K  T  K  K  *  S  K  L  V  F  R  K  Q :   *  *  K   </first_frame>
            <second_frame>  V  I  H  T  P  K  Q  Q  R :   N  I  *  E  E  I  *  D  G  S  Q  K  C  F  Q  I  C  F  S  *  A  L  *  Q  W  Q  G  I  K  *  G  G  K  S  C  *  K  C  L  H  Q   : E  N  G  E  R  E  A  G  E  A  C  S  P   : G  S  Q  A  R  R  T  S  C  R  W  L  R  V  S  T  *  C  C  I  E  C  P  G  L  F  N  I  Q  S  I  R  *  Q  I  P  Q  L  W  C  S  S  W  T  D  H  W  C  W  C  F  G  L  V  P  N  V  K  G  Q  E  D  G  R  S  T  G  L  K  Y  L  L  I  S  E  L  L  K  R  P  K  N  K  A  N  S  C  F  V  N   : N  N  K  R  </second_frame>
            <third_frame>   *  F  T  H  R  N  N  R   : G  I  F  E  K  K  F  E  M  A  A  R  N  A  F  R  Y  V  S  R  R  L  S  S  S  G  K  V  L  S  E  E  E  K  A  A  E  N  V  Y  I  K  :  K  M  E  K  E  K  L  E  K  L  A  R  Q  :  G  P  K  P  G  E  Q  A  A  G  G  S  G  S  V  P  D  A  A  S  S  A  Q  A  S  S  T  S  R  V  S  D  D  K  Y  R  N  Y  G  V  L  A  G  L  I  T  G  V  G  A  L  G  W  Y  L  M  S  K  D  K  K  T  E  E  V  Q  D  *  S  I  S  L  L  A  N  S  L  K  D  Q  K  I  K  Q  T  R  V  S  *  T  :  I  I  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117062" stop="117041"/>
                    <exon start="113464" stop="113340"/>
                    <exon start="112830" stop="112792"/>
                    <exon start="112094" stop="111891"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTHRNNRGIFEKKFEMAARNAFRYVSRRLSSSGKVLSEEEKAAENVYIKKMEKEKLEKLARQGPKPGEQAAGGSGSVPDAASSAQASSTSRVSDDKYRNYGVLAGLITGVGALGWYLMSKDKKTEEVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="110315" PGL_stop="111148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110315" e_stop="110514"/>
            <exon e_start="110845" e_stop="111141"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="110315" e_stop="110514" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="110845" e_stop="111141" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110514"/>
              <exon start="110845" stop="111073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110514"/>
              <exon start="110845" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="111084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110514"/>
              <exon start="110845" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110853" stop="111141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATAAAAATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAATGTTCTGCTTGTAGCATATGCCTAATTATTATTATTTTTTATCATAAAATCAGACCAACAAA</gDNA_template>
            <first_frame> Y  Y  K  N  F  I  N  V  I  I  *  E  P  K  K  I  K  I  H  Q  *  *  P  K  F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L  L  *  C  S  A  C  S  I  C  L  I  I  I  I  F  Y  H  K  I  R  P  T   </first_frame>
            <second_frame>  I  I  K  I  L  *  M  *  *  F  K  N  P  K  K  L  K  F  I  N  S  N  Q  S  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F  Y  Y  N  V  L  L  V  A  Y  A  *  L  L  L  F  F  I  I  K  S  D  Q  Q  </second_frame>
            <third_frame>   L  *  K  F  Y  K  C  N  N  L  R  T  Q  K  N  *  N  S  S  I  V  T  K  V  F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  I  I  M  F  C  L  *  H  M  P  N  Y  Y  Y  F  L  S  *  N  Q  T  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110365" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIVTKVFFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110315" e_stop="110514"/>
            <exon e_start="110845" e_stop="111078"/>
            <exon e_start="111133" e_stop="111148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="110315" e_stop="110514" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110845" e_stop="111078" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="111079" i_stop="111132" i_length="54"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="111133" e_stop="111148" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110514"/>
              <exon start="110845" stop="111073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110514"/>
              <exon start="110845" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110391" stop="110514"/>
              <exon start="110845" stop="111078"/>
              <exon start="111133" stop="111141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110866" stop="111078"/>
              <exon start="111133" stop="111148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATAAAAATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATA : ACCAACAAATAAGTAA</gDNA_template>
            <first_frame> Y  Y  K  N  F  I  N  V  I  I  *  E  P  K  K  I  K  I  H  Q  *  *  P  K  F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L  L  * :   P  T  N  K  * </first_frame>
            <second_frame>  I  I  K  I  L  *  M  *  *  F  K  N  P  K  K  L  K  F  I  N  S  N  Q  S  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F  Y  Y   : N  Q  Q  I  S   </second_frame>
            <third_frame>   L  *  K  F  Y  K  C  N  N  L  R  T  Q  K  N  *  N  S  S  I  V  T  K  V  F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  I  I  :  T  N  K  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110365" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIVTKVFFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110315" e_stop="110514"/>
            <exon e_start="110845" e_stop="111080"/>
            <exon e_start="111133" e_stop="111140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="110315" e_stop="110514" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110845" e_stop="111080" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="111081" i_stop="111132" i_length="52"/>
          </intron>
          <exon e_serial="3" e_score="0.625">
            <gDNA_exon_boundary e_start="111133" e_stop="111140" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110514"/>
              <exon start="110845" stop="111073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110514"/>
              <exon start="110845" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110389" stop="110514"/>
              <exon start="110845" stop="111080"/>
              <exon start="111133" stop="111140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110394" stop="110514"/>
              <exon start="110845" stop="111080"/>
              <exon start="111133" stop="111140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATAAAAATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAAT : ACCAACAA</gDNA_template>
            <first_frame> Y  Y  K  N  F  I  N  V  I  I  *  E  P  K  K  I  K  I  H  Q  *  *  P  K  F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L  L  *   : Y  Q  Q </first_frame>
            <second_frame>  I  I  K  I  L  *  M  *  *  F  K  N  P  K  K  L  K  F  I  N  S  N  Q  S  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F  Y  Y  N  :  T  N   </second_frame>
            <third_frame>   L  *  K  F  Y  K  C  N  N  L  R  T  Q  K  N  *  N  S  S  I  V  T  K  V  F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  I  I  I :   P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110365" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIVTKVFFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="110315" e_stop="110514"/>
            <exon e_start="110845" e_stop="111079"/>
            <exon e_start="111133" e_stop="111143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="110315" e_stop="110514" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110845" e_stop="111079" e_length="235"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="111080" i_stop="111132" i_length="53"/>
          </intron>
          <exon e_serial="3" e_score="0.727">
            <gDNA_exon_boundary e_start="111133" e_stop="111143" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110514"/>
              <exon start="110845" stop="111073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110514"/>
              <exon start="110845" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111079"/>
              <exon start="111133" stop="111143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110388" stop="110514"/>
              <exon start="110845" stop="111076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATAAAAATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATTATAA : ACCAACAAATA</gDNA_template>
            <first_frame> Y  Y  K  N  F  I  N  V  I  I  *  E  P  K  K  I  K  I  H  Q  *  *  P  K  F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L  L  *  :  T  N  K   </first_frame>
            <second_frame>  I  I  K  I  L  *  M  *  *  F  K  N  P  K  K  L  K  F  I  N  S  N  Q  S  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F  Y  Y  K :   P  T  N  </second_frame>
            <third_frame>   L  *  K  F  Y  K  C  N  N  L  R  T  Q  K  N  *  N  S  S  I  V  T  K  V  F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  I  I   : N  Q  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110365" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIVTKVFFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="110315" e_stop="110514"/>
            <exon e_start="110845" e_stop="111075"/>
            <exon e_start="111133" e_stop="111144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="110315" e_stop="110514" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110845" e_stop="111075" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="111076" i_stop="111132" i_length="57"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="111133" e_stop="111144" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110315" stop="110514"/>
              <exon start="110845" stop="111073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110382" stop="110514"/>
              <exon start="110845" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110386" stop="110514"/>
              <exon start="110845" stop="111075"/>
              <exon start="111133" stop="111144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110386" stop="110514"/>
              <exon start="110845" stop="111073"/>
              <exon start="111133" stop="111144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTATAAAAATTTTATAAATGTAATAATTTAAGAACCCAAAAAAATTAAAATTCATCAATAGTAACCAAAGTTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTTATT : ACCAACAAATAA</gDNA_template>
            <first_frame> Y  Y  K  N  F  I  N  V  I  I  *  E  P  K  K  I  K  I  H  Q  *  *  P  K  F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L  L :   P  T  N   </first_frame>
            <second_frame>  I  I  K  I  L  *  M  *  *  F  K  N  P  K  K  L  K  F  I  N  S  N  Q  S  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F  Y   : Y  Q  Q  I  </second_frame>
            <third_frame>   L  *  K  F  Y  K  C  N  N  L  R  T  Q  K  N  *  N  S  S  I  V  T  K  V  F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  I  :  T  N  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110365" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSIVTKVFFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="110387" e_stop="110514"/>
            <exon e_start="110845" e_stop="111072"/>
            <exon e_start="111133" e_stop="111144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110387" e_stop="110514" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110515" i_stop="110844" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110845" e_stop="111072" e_length="228"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="111073" i_stop="111132" i_length="60"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="111133" e_stop="111144" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="111072"/>
              <exon start="111133" stop="111144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110387" stop="110514"/>
              <exon start="110845" stop="110891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110428" stop="110514"/>
              <exon start="110845" stop="111002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110432" stop="110514"/>
              <exon start="110845" stop="111072"/>
              <exon start="111133" stop="111144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTAAAAAAATGGCAACTGAAGAGGGAACAATCGAACCTTCAGCTCAACCGGCGCCGGCGCCGGAACCACCATCGGAGGAGGCGGTAGCTGCCGTCGTTGATGAAATATCTAAGGAAATCAAG : GAGGAAAAGAAAGGAGAAGGAGATTTGAAGGCAACCCTTTTGATATCAGGTGCTGTAGTAGCTGTGCTTGGTGCAATTTTTGCTATTTTTAAGAAGGTTAAAGGGTCTGCTTAAATTAATGCTACTAAATTATTTTTAATTTCCCAACTTGCAACTGCATTTTGTAATTTCTTTTCTGTAAAGACCCCTATTACTTTGAAGGGAAATAAATAAATTCCATTTGCTTTT : ACCAACAAATAA</gDNA_template>
            <first_frame> F  F  L  K  K  W  Q  L  K  R  E  Q  S  N  L  Q  L  N  R  R  R  R  R  N  H  H  R  R  R  R  *  L  P  S  L  M  K  Y  L  R  K  S  R :   R  K  R  K  E  K  E  I  *  R  Q  P  F  *  Y  Q  V  L  *  *  L  C  L  V  Q  F  L  L  F  L  R  R  L  K  G  L  L  K  L  M  L  L  N  Y  F  *  F  P  N  L  Q  L  H  F  V  I  S  F  L  *  R  P  L  L  L  *  R  E  I  N  K  F  H  L  L  L :   P  T  N   </first_frame>
            <second_frame>  F  F  *  K  N  G  N  *  R  G  N  N  R  T  F  S  S  T  G  A  G  A  G  T  T  I  G  G  G  G  S  C  R  R  *  *  N  I  *  G  N  Q   : G  G  K  E  R  R  R  R  F  E  G  N  P  F  D  I  R  C  C  S  S  C  A  W  C  N  F  C  Y  F  *  E  G  *  R  V  C  L  N  *  C  Y  *  I  I  F  N  F  P  T  C  N  C  I  L  *  F  L  F  C  K  D  P  Y  Y  F  E  G  K  *  I  N  S  I  C  F   : Y  Q  Q  I  </second_frame>
            <third_frame>   F  F  K  K  M  A  T  E  E  G  T  I  E  P  S  A  Q  P  A  P  A  P  E  P  P  S  E  E  A  V  A  A  V  V  D  E  I  S  K  E  I  K  :  E  E  K  K  G  E  G  D  L  K  A  T  L  L  I  S  G  A  V  V  A  V  L  G  A  I  F  A  I  F  K  K  V  K  G  S  A  *  I  N  A  T  K  L  F  L  I  S  Q  L  A  T  A  F  C  N  F  F  S  V  K  T  P  I  T  L  K  G  N  K  *  I  P  F  A  F  :  T  N  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110389" stop="110514"/>
                    <exon start="110845" stop="110958"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFKKMATEEGTIEPSAQPAPAPEPPSEEAVAAVVDEISKEIKEEKKGEGDLKATLLISGAVVAVLGAIFAIFKKVKGSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="118481" PGL_stop="128948"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118481" e_stop="118826"/>
            <exon e_start="119029" e_stop="119088"/>
            <exon e_start="120646" e_stop="120699"/>
            <exon e_start="120789" e_stop="120961"/>
            <exon e_start="121084" e_stop="121270"/>
            <exon e_start="121513" e_stop="121658"/>
            <exon e_start="121736" e_stop="121890"/>
            <exon e_start="123283" e_stop="123364"/>
            <exon e_start="123451" e_stop="123566"/>
            <exon e_start="125012" e_stop="125110"/>
            <exon e_start="125708" e_stop="125831"/>
            <exon e_start="126384" e_stop="126661"/>
            <exon e_start="127957" e_stop="128171"/>
            <exon e_start="128265" e_stop="128948"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.730" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.724" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.610" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="118481" e_stop="118826" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.730" acc_prob="0.985">
            <gDNA_intron_boundary i_start="118827" i_stop="119028" i_length="202"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119029" e_stop="119088" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.712">
            <gDNA_intron_boundary i_start="119089" i_stop="120645" i_length="1557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120646" e_stop="120699" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.943">
            <gDNA_intron_boundary i_start="120700" i_stop="120788" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120789" e_stop="120961" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.949">
            <gDNA_intron_boundary i_start="120962" i_stop="121083" i_length="122"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="121084" e_stop="121270" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.980">
            <gDNA_intron_boundary i_start="121271" i_stop="121512" i_length="242"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121513" e_stop="121658" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.982">
            <gDNA_intron_boundary i_start="121659" i_stop="121735" i_length="77"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="121736" e_stop="121890" e_length="155"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.923">
            <gDNA_intron_boundary i_start="121891" i_stop="123282" i_length="1392"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="123283" e_stop="123364" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.724">
            <gDNA_intron_boundary i_start="123365" i_stop="123450" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="123451" e_stop="123566" e_length="116"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="123567" i_stop="125011" i_length="1445"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="125012" e_stop="125110" e_length="99"/>
          </exon>
          <intron i_serial="10" don_prob="0.969" acc_prob="0.872">
            <gDNA_intron_boundary i_start="125111" i_stop="125707" i_length="597"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="125708" e_stop="125831" e_length="124"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="125832" i_stop="126383" i_length="552"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="126384" e_stop="126661" e_length="278"/>
          </exon>
          <intron i_serial="12" don_prob="0.685" acc_prob="0.610">
            <gDNA_intron_boundary i_start="126662" i_stop="127956" i_length="1295"/>
          </intron>
          <exon e_serial="13" e_score="0.991">
            <gDNA_exon_boundary e_start="127957" e_stop="128171" e_length="215"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="128172" i_stop="128264" i_length="93"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="128265" e_stop="128948" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118481" stop="118826"/>
              <exon start="119029" stop="119088"/>
              <exon start="120646" stop="120699"/>
              <exon start="120789" stop="120961"/>
              <exon start="121084" stop="121270"/>
              <exon start="121513" stop="121658"/>
              <exon start="121736" stop="121890"/>
              <exon start="123283" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125831"/>
              <exon start="126384" stop="126661"/>
              <exon start="127957" stop="128171"/>
              <exon start="128265" stop="128744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118481" stop="118826"/>
              <exon start="119029" stop="119088"/>
              <exon start="120646" stop="120699"/>
              <exon start="120789" stop="120961"/>
              <exon start="121084" stop="121204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118482" stop="118826"/>
              <exon start="119029" stop="119088"/>
              <exon start="120646" stop="120699"/>
              <exon start="120789" stop="120854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121088" stop="121270"/>
              <exon start="121513" stop="121658"/>
              <exon start="121736" stop="121890"/>
              <exon start="123283" stop="123364"/>
              <exon start="123451" stop="123530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123343" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125831"/>
              <exon start="126384" stop="126654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123343" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125831"/>
              <exon start="126384" stop="126600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123343" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125831"/>
              <exon start="126384" stop="126440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123343" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123343" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123351" stop="123364"/>
              <exon start="123451" stop="123566"/>
              <exon start="125012" stop="125110"/>
              <exon start="125708" stop="125831"/>
              <exon start="126384" stop="126661"/>
              <exon start="127957" stop="128171"/>
              <exon start="128265" stop="128272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126605" stop="126661"/>
              <exon start="127957" stop="128171"/>
              <exon start="128265" stop="128744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128286" stop="128920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128287" stop="128913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128669" stop="128948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288766" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTAATCTCACGCGCTAATGGCGGTGCGTGCAACGGTTACTCGGTTTCCGATTGACCTAGAGTCACTAATGGACTCAGGGCTACCGTGGGGTGTAACAGTTTCACCGTTTGCTGCAAAGGATGAGAATGGGAATCCACCGGTTTATGGATCGGAAGGTCACTTGCTACCGCGATGTGAGAATTGTTGGGCTTACTATAATACATACTGTGAGCAAGAGCAATGGGCTTGGACTTGTTCCCTTTGTGGTACACTTAATGGACTATCTTCTCAGTCTGTCAGTCGTTATTCTCAACCTGAATCTTGCCCGGAGAATATGTCTTCGTTTATTGACCTTGAATTGCCCA : TGGAAGAATCTGAGGAAATGCAGGCACGGCCTGTTTATGTAGCAGCTGTTGATCTTGCTT : CATCCGAGGAGTTTTTGGAACTTGTTAAAAGTGCCCTTTTAGCTGCTTTAGAAG : CTCTTGGGCCTGGATCACTATTTGGCTTGGCCACATTCAGCCATAAAATAGGTTTGTATGATGTTCAAGGCCCCATTCCAGTGGTGAAGAATGTTTTCATTCCTCATGATTCTGATGGTACCTTGTCTATGGAACTTCAGGATGTCATGCCCCTATCTTCATTCTTAGCTCCA : GTGGATACTTGTAAGGACCGCATAGCGTCAGCACTTGAAACATTGAGGCCAACAACTTCATGGGAAAGGACATCAGGTGCAGGTCAAGGGCTAGATGGAGCTTTCCTGGGTGGAAGGGGTTTTGGATCTGCAATGGAAGCCCTTTTCAATTATATTGGATCAGAATATGGAAATACATTTGCATTAG : CTAGAGTTTTTGCTTTTCTTTCGGGTGCTCCCGATATTGGAGCTGGCCAACTAGATACAAGACGATATGGAGAGCAGTACGCTAGTAGACGAGAGGATGCAGATCGAGCTTTACTTCCCGAACAAACTCCGTTCTATAAAGATCTG : GCTGCCGTGGCTGTGCAATCAGGTGTTTGTGTAGACATATTTGCTGTGACAAATGAGTATACTGACTTGGCATCATTGAAGTTTCTGAGTATTGAGAGTGGAGGCTCCTTATTTTTGTATACGAGCACTGATGACTCCACACTTCCTCAAGACAT : GTACCGCATGTTAAGTCGACCATATGCTTTTAATTGTGTCCTAAGGCTGAGGACTTCGTCTGAATTCCAGCAGAGTCATTCT : TATGGGCATTTCTTCCCAGATCCACAATATGAAAATGTCCAACACATAATTTGTTGTGATTCTTTCGCGACATATGCCTATGATTTTGAGTTTGTGAATAGTGCTGGATTTTCCAG : GCATACTTCAGAATTGCCTATGCTGCAAATTGCTTTTCAGTATACTGTTGTTGTCCCACCAGATGAACTAGCAAATGCAGGATCAAATACTACAACAAG : AGCAAAGCATTCTCTCAAAAAGAGATTAAGGATTCGAACTCTTCAGTTTGGAGTAGGTCATAGCATAAATGAGATTTATGACTGTGTTGATTCTGAAGTGGTGCTTTCATTACTTGTCCACAAG : GTTATTCTAGCCTCGTTGGAGCAAGGTGTTCGAGAGGGCAGAATGTTACTTCATGATTGGCTTGTTATTCTTACAGCTCAGTATAATGATGCTTGTAAACTTATTCAGTCTGGGCATGGTGGTTCAAGTGGCGTTCACATTGATGTTGCATTTTCCCAATGTCCTCAACTGCAGCCTTTACCCCGCTTGGTTTTTGCTCTATTACGAAATCCTCTTCTCCGTTTACACGAAGAAGGCGTGCATCCTGACTACCGAATATATCTTCAGTGTCTTTTTAG : TGCACTAGAACCTTCTTCTCTTAGTCGTGCTGTATATCCATTGTTAACCTCATATGCCTCACCGGATAAGCAAGCATATCCTCGACATTCCCTCAGCCGAGCTGCACTGATTACAAGTGGCAGTTCGATATTTTTCCTTGATGCATTCACAAATCTCATTGTGTTCTATGCTTCGACAGCAGAACCTTCACTTCCGTTTCCGCCACCTCAGGACT : GTTTACTGAGAACAACAATAAACAAGCTTAAGCAAGAGAGGTGTATTACACCGAGACTTTCATTTATCAAGGGAGGGCAGGATGATGCAACGGCGTTTGAGAACTATCTAATAGAGGAACAAGACGTTGAAGGAAGTGGCTTTACAAGTGTCATGGGTTTCGTTTCATTCCTCGATGAGATTAACCAAAGCACATTGGAGTACTTGAAATAAGTTGCATCCATCTTTCAACACCACAGGTTATGACGGGAAGTAGGTACCTCCAAACTCACTGTACAATTCGACAAAAAACAGTTATATCATCGACAACCAATGAACAAGTCCAAACTTTTGCAACAAAGGGTTACATGTAGCATCACAGCAAGTATTTCTGACTTACTCAGAGCAGTTGAACCGGTGTCACCTCCCAAGAGCGTATCGTTTTATGTTTCCCAGTTCAGCTTTAGACAGTAGATTTGCTCATTCAAAATTTGTACCAGAAGCTGGATCAAACTCTTATCTTTTTCTTGGGTTGATACCTTAAATATAGAATAAATAGCTGTGTTTTTGAACCAGAATTTTGTTGTTTGTCAGGTTTTCTGTTGTTTTCTTAATTCACACATTTGGTTCTGTTGGTGCATTGGCATATGGAAATTGAATGTAATTCTTGTGTTTTTGTTCTTGTGAAGTACAAAGTTTTGTTTTC</gDNA_template>
            <first_frame> L  *  S  H  A  L  M  A  V  R  A  T  V  T  R  F  P  I  D  L  E  S  L  M  D  S  G  L  P  W  G  V  T  V  S  P  F  A  A  K  D  E  N  G  N  P  P  V  Y  G  S  E  G  H  L  L  P  R  C  E  N  C  W  A  Y  Y  N  T  Y  C  E  Q  E  Q  W  A  W  T  C  S  L  C  G  T  L  N  G  L  S  S  Q  S  V  S  R  Y  S  Q  P  E  S  C  P  E  N  M  S  S  F  I  D  L  E  L  P   : M  E  E  S  E  E  M  Q  A  R  P  V  Y  V  A  A  V  D  L  A   : S  S  E  E  F  L  E  L  V  K  S  A  L  L  A  A  L  E   : A  L  G  P  G  S  L  F  G  L  A  T  F  S  H  K  I  G  L  Y  D  V  Q  G  P  I  P  V  V  K  N  V  F  I  P  H  D  S  D  G  T  L  S  M  E  L  Q  D  V  M  P  L  S  S  F  L  A  P  :  V  D  T  C  K  D  R  I  A  S  A  L  E  T  L  R  P  T  T  S  W  E  R  T  S  G  A  G  Q  G  L  D  G  A  F  L  G  G  R  G  F  G  S  A  M  E  A  L  F  N  Y  I  G  S  E  Y  G  N  T  F  A  L   : A  R  V  F  A  F  L  S  G  A  P  D  I  G  A  G  Q  L  D  T  R  R  Y  G  E  Q  Y  A  S  R  R  E  D  A  D  R  A  L  L  P  E  Q  T  P  F  Y  K  D  L  :  A  A  V  A  V  Q  S  G  V  C  V  D  I  F  A  V  T  N  E  Y  T  D  L  A  S  L  K  F  L  S  I  E  S  G  G  S  L  F  L  Y  T  S  T  D  D  S  T  L  P  Q  D  M :   Y  R  M  L  S  R  P  Y  A  F  N  C  V  L  R  L  R  T  S  S  E  F  Q  Q  S  H  S  :  Y  G  H  F  F  P  D  P  Q  Y  E  N  V  Q  H  I  I  C  C  D  S  F  A  T  Y  A  Y  D  F  E  F  V  N  S  A  G  F  S  R :   H  T  S  E  L  P  M  L  Q  I  A  F  Q  Y  T  V  V  V  P  P  D  E  L  A  N  A  G  S  N  T  T  T  R :   A  K  H  S  L  K  K  R  L  R  I  R  T  L  Q  F  G  V  G  H  S  I  N  E  I  Y  D  C  V  D  S  E  V  V  L  S  L  L  V  H  K  :  V  I  L  A  S  L  E  Q  G  V  R  E  G  R  M  L  L  H  D  W  L  V  I  L  T  A  Q  Y  N  D  A  C  K  L  I  Q  S  G  H  G  G  S  S  G  V  H  I  D  V  A  F  S  Q  C  P  Q  L  Q  P  L  P  R  L  V  F  A  L  L  R  N  P  L  L  R  L  H  E  E  G  V  H  P  D  Y  R  I  Y  L  Q  C  L  F  S :   A  L  E  P  S  S  L  S  R  A  V  Y  P  L  L  T  S  Y  A  S  P  D  K  Q  A  Y  P  R  H  S  L  S  R  A  A  L  I  T  S  G  S  S  I  F  F  L  D  A  F  T  N  L  I  V  F  Y  A  S  T  A  E  P  S  L  P  F  P  P  P  Q  D   : C  L  L  R  T  T  I  N  K  L  K  Q  E  R  C  I  T  P  R  L  S  F  I  K  G  G  Q  D  D  A  T  A  F  E  N  Y  L  I  E  E  Q  D  V  E  G  S  G  F  T  S  V  M  G  F  V  S  F  L  D  E  I  N  Q  S  T  L  E  Y  L  K  *  V  A  S  I  F  Q  H  H  R  L  *  R  E  V  G  T  S  K  L  T  V  Q  F  D  K  K  Q  L  Y  H  R  Q  P  M  N  K  S  K  L  L  Q  Q  R  V  T  C  S  I  T  A  S  I  S  D  L  L  R  A  V  E  P  V  S  P  P  K  S  V  S  F  Y  V  S  Q  F  S  F  R  Q  *  I  C  S  F  K  I  C  T  R  S  W  I  K  L  L  S  F  S  W  V  D  T  L  N  I  E  *  I  A  V  F  L  N  Q  N  F  V  V  C  Q  V  F  C  C  F  L  N  S  H  I  W  F  C  W  C  I  G  I  W  K  L  N  V  I  L  V  F  L  F  L  *  S  T  K  F  C  F  </first_frame>
            <second_frame>  S  N  L  T  R  *  W  R  C  V  Q  R  L  L  G  F  R  L  T  *  S  H  *  W  T  Q  G  Y  R  G  V  *  Q  F  H  R  L  L  Q  R  M  R  M  G  I  H  R  F  M  D  R  K  V  T  C  Y  R  D  V  R  I  V  G  L  T  I  I  H  T  V  S  K  S  N  G  L  G  L  V  P  F  V  V  H  L  M  D  Y  L  L  S  L  S  V  V  I  L  N  L  N  L  A  R  R  I  C  L  R  L  L  T  L  N  C  P  :  W  K  N  L  R  K  C  R  H  G  L  F  M  *  Q  L  L  I  L  L  :  H  P  R  S  F  W  N  L  L  K  V  P  F  *  L  L  *  K  :  L  L  G  L  D  H  Y  L  A  W  P  H  S  A  I  K  *  V  C  M  M  F  K  A  P  F  Q  W  *  R  M  F  S  F  L  M  I  L  M  V  P  C  L  W  N  F  R  M  S  C  P  Y  L  H  S  *  L  Q :   W  I  L  V  R  T  A  *  R  Q  H  L  K  H  *  G  Q  Q  L  H  G  K  G  H  Q  V  Q  V  K  G  *  M  E  L  S  W  V  E  G  V  L  D  L  Q  W  K  P  F  S  I  I  L  D  Q  N  M  E  I  H  L  H  *  :  L  E  F  L  L  F  F  R  V  L  P  I  L  E  L  A  N  *  I  Q  D  D  M  E  S  S  T  L  V  D  E  R  M  Q  I  E  L  Y  F  P  N  K  L  R  S  I  K  I  W :   L  P  W  L  C  N  Q  V  F  V  *  T  Y  L  L  *  Q  M  S  I  L  T  W  H  H  *  S  F  *  V  L  R  V  E  A  P  Y  F  C  I  R  A  L  M  T  P  H  F  L  K  T   : C  T  A  C  *  V  D  H  M  L  L  I  V  S  *  G  *  G  L  R  L  N  S  S  R  V  I  L :   M  G  I  S  S  Q  I  H  N  M  K  M  S  N  T  *  F  V  V  I  L  S  R  H  M  P  M  I  L  S  L  *  I  V  L  D  F  P   : G  I  L  Q  N  C  L  C  C  K  L  L  F  S  I  L  L  L  S  H  Q  M  N  *  Q  M  Q  D  Q  I  L  Q  Q   : E  Q  S  I  L  S  K  R  D  *  G  F  E  L  F  S  L  E  *  V  I  A  *  M  R  F  M  T  V  L  I  L  K  W  C  F  H  Y  L  S  T  R :   L  F  *  P  R  W  S  K  V  F  E  R  A  E  C  Y  F  M  I  G  L  L  F  L  Q  L  S  I  M  M  L  V  N  L  F  S  L  G  M  V  V  Q  V  A  F  T  L  M  L  H  F  P  N  V  L  N  C  S  L  Y  P  A  W  F  L  L  Y  Y  E  I  L  F  S  V  Y  T  K  K  A  C  I  L  T  T  E  Y  I  F  S  V  F  L   : V  H  *  N  L  L  L  L  V  V  L  Y  I  H  C  *  P  H  M  P  H  R  I  S  K  H  I  L  D  I  P  S  A  E  L  H  *  L  Q  V  A  V  R  Y  F  S  L  M  H  S  Q  I  S  L  C  S  M  L  R  Q  Q  N  L  H  F  R  F  R  H  L  R  T  :  V  Y  *  E  Q  Q  *  T  S  L  S  K  R  G  V  L  H  R  D  F  H  L  S  R  E  G  R  M  M  Q  R  R  L  R  T  I  *  *  R  N  K  T  L  K  E  V  A  L  Q  V  S  W  V  S  F  H  S  S  M  R  L  T  K  A  H  W  S  T  *  N  K  L  H  P  S  F  N  T  T  G  Y  D  G  K  *  V  P  P  N  S  L  Y  N  S  T  K  N  S  Y  I  I  D  N  Q  *  T  S  P  N  F  C  N  K  G  L  H  V  A  S  Q  Q  V  F  L  T  Y  S  E  Q  L  N  R  C  H  L  P  R  A  Y  R  F  M  F  P  S  S  A  L  D  S  R  F  A  H  S  K  F  V  P  E  A  G  S  N  S  Y  L  F  L  G  L  I  P  *  I  *  N  K  *  L  C  F  *  T  R  I  L  L  F  V  R  F  S  V  V  F  L  I  H  T  F  G  S  V  G  A  L  A  Y  G  N  *  M  *  F  L  C  F  C  S  C  E  V  Q  S  F  V  F </second_frame>
            <third_frame>   L  I  S  R  A  N  G  G  A  C  N  G  Y  S  V  S  D  *  P  R  V  T  N  G  L  R  A  T  V  G  C  N  S  F  T  V  C  C  K  G  *  E  W  E  S  T  G  L  W  I  G  R  S  L  A  T  A  M  *  E  L  L  G  L  L  *  Y  I  L  *  A  R  A  M  G  L  D  L  F  P  L  W  Y  T  *  W  T  I  F  S  V  C  Q  S  L  F  S  T  *  I  L  P  G  E  Y  V  F  V  Y  *  P  *  I  A  H :   G  R  I  *  G  N  A  G  T  A  C  L  C  S  S  C  *  S  C  F :   I  R  G  V  F  G  T  C  *  K  C  P  F  S  C  F  R  S :   S  W  A  W  I  T  I  W  L  G  H  I  Q  P  *  N  R  F  V  *  C  S  R  P  H  S  S  G  E  E  C  F  H  S  S  *  F  *  W  Y  L  V  Y  G  T  S  G  C  H  A  P  I  F  I  L  S  S   : S  G  Y  L  *  G  P  H  S  V  S  T  *  N  I  E  A  N  N  F  M  G  K  D  I  R  C  R  S  R  A  R  W  S  F  P  G  W  K  G  F  W  I  C  N  G  S  P  F  Q  L  Y  W  I  R  I  W  K  Y  I  C  I  S :   *  S  F  C  F  S  F  G  C  S  R  Y  W  S  W  P  T  R  Y  K  T  I  W  R  A  V  R  *  *  T  R  G  C  R  S  S  F  T  S  R  T  N  S  V  L  *  R  S   : G  C  R  G  C  A  I  R  C  L  C  R  H  I  C  C  D  K  *  V  Y  *  L  G  I  I  E  V  S  E  Y  *  E  W  R  L  L  I  F  V  Y  E  H  *  *  L  H  T  S  S  R  H  :  V  P  H  V  K  S  T  I  C  F  *  L  C  P  K  A  E  D  F  V  *  I  P  A  E  S  F   : L  W  A  F  L  P  R  S  T  I  *  K  C  P  T  H  N  L  L  *  F  F  R  D  I  C  L  *  F  *  V  C  E  *  C  W  I  F  Q  :  A  Y  F  R  I  A  Y  A  A  N  C  F  S  V  Y  C  C  C  P  T  R  *  T  S  K  C  R  I  K  Y  Y  N  K  :  S  K  A  F  S  Q  K  E  I  K  D  S  N  S  S  V  W  S  R  S  *  H  K  *  D  L  *  L  C  *  F  *  S  G  A  F  I  T  C  P  Q   : G  Y  S  S  L  V  G  A  R  C  S  R  G  Q  N  V  T  S  *  L  A  C  Y  S  Y  S  S  V  *  *  C  L  *  T  Y  S  V  W  A  W  W  F  K  W  R  S  H  *  C  C  I  F  P  M  S  S  T  A  A  F  T  P  L  G  F  C  S  I  T  K  S  S  S  P  F  T  R  R  R  R  A  S  *  L  P  N  I  S  S  V  S  F  *  :  C  T  R  T  F  F  S  *  S  C  C  I  S  I  V  N  L  I  C  L  T  G  *  A  S  I  S  S  T  F  P  Q  P  S  C  T  D  Y  K  W  Q  F  D  I  F  P  *  C  I  H  K  S  H  C  V  L  C  F  D  S  R  T  F  T  S  V  S  A  T  S  G  L :   F  T  E  N  N  N  K  Q  A  *  A  R  E  V  Y  Y  T  E  T  F  I  Y  Q  G  R  A  G  *  C  N  G  V  *  E  L  S  N  R  G  T  R  R  *  R  K  W  L  Y  K  C  H  G  F  R  F  I  P  R  *  D  *  P  K  H  I  G  V  L  E  I  S  C  I  H  L  S  T  P  Q  V  M  T  G  S  R  Y  L  Q  T  H  C  T  I  R  Q  K  T  V  I  S  S  T  T  N  E  Q  V  Q  T  F  A  T  K  G  Y  M  *  H  H  S  K  Y  F  *  L  T  Q  S  S  *  T  G  V  T  S  Q  E  R  I  V  L  C  F  P  V  Q  L  *  T  V  D  L  L  I  Q  N  L  Y  Q  K  L  D  Q  T  L  I  F  F  L  G  *  Y  L  K  Y  R  I  N  S  C  V  F  E  P  E  F  C  C  L  S  G  F  L  L  F  S  *  F  T  H  L  V  L  L  V  H  W  H  M  E  I  E  C  N  S  C  V  F  V  L  V  K  Y  K  V  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118487" stop="118826"/>
                    <exon start="119029" stop="119088"/>
                    <exon start="120646" stop="120699"/>
                    <exon start="120789" stop="120961"/>
                    <exon start="121084" stop="121270"/>
                    <exon start="121513" stop="121658"/>
                    <exon start="121736" stop="121890"/>
                    <exon start="123283" stop="123364"/>
                    <exon start="123451" stop="123566"/>
                    <exon start="125012" stop="125110"/>
                    <exon start="125708" stop="125831"/>
                    <exon start="126384" stop="126661"/>
                    <exon start="127957" stop="128171"/>
                    <exon start="128265" stop="128476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2238</number_coding_nucleotides>
                  <number_encoded_amino_acids>746</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHALMAVRATVTRFPIDLESLMDSGLPWGVTVSPFAAKDENGNPPVYGSEGHLLPRCENCWAYYNTYCEQEQWAWTCSLCGTLNGLSSQSVSRYSQPESCPENMSSFIDLELPMEESEEMQARPVYVAAVDLASSEEFLELVKSALLAALEALGPGSLFGLATFSHKIGLYDVQGPIPVVKNVFIPHDSDGTLSMELQDVMPLSSFLAPVDTCKDRIASALETLRPTTSWERTSGAGQGLDGAFLGGRGFGSAMEALFNYIGSEYGNTFALARVFAFLSGAPDIGAGQLDTRRYGEQYASRREDADRALLPEQTPFYKDLAAVAVQSGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTDDSTLPQDMYRMLSRPYAFNCVLRLRTSSEFQQSHSYGHFFPDPQYENVQHIICCDSFATYAYDFEFVNSAGFSRHTSELPMLQIAFQYTVVVPPDELANAGSNTTTRAKHSLKKRLRIRTLQFGVGHSINEIYDCVDSEVVLSLLVHKVILASLEQGVREGRMLLHDWLVILTAQYNDACKLIQSGHGGSSGVHIDVAFSQCPQLQPLPRLVFALLRNPLLRLHEEGVHPDYRIYLQCLFSALEPSSLSRAVYPLLTSYASPDKQAYPRHSLSRAALITSGSSIFFLDAFTNLIVFYASTAEPSLPFPPPQDCLLRTTINKLKQERCITPRLSFIKGGQDDATAFENYLIEEQDVEGSGFTSVMGFVSFLDEINQSTLEYLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128510" stop="128716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVGTSKLTVQFDKKQLYHRQPMNKSKLLQQRVTCSITASISDLLRAVEPVSPPKSVSFYVSQFSFRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="129723" PGL_stop="131815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131361" e_stop="131815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="131361" e_stop="131815" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131361" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131361" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131361" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131361" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131362" stop="131779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131362" stop="131779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131364" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131459" stop="131815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131460" stop="131815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCATTTTCAGGAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</gDNA_template>
            <first_frame> V  H  F  Q  E  K  N  E  E  R  N  S  P  S  N  A  M  D  I  L  R  D  A  K  W  T  V  D  A  C  Y  D  D  *  N  T  P  N  R  Q  G  L  S  H  Q  S  K  A  S  D  G  S  K  S  W  S  D  C  K  V  *  A  P  I  W  *  E  G  G  R  G  G  E  N  R  Q  M  I  A  *  V  G  K  I  V  N  L  *  *  F  C  G  W  I  H  P  R  V  F  L  S  I  S  S  *  L  V  F  L  Y  A  V  T  P  L  N  V  L  L  N  I  S  K  Q  H  I  L  P  T  V  Y  T  N  S  V  I  F  L  Q  Q  S  L  W  L  V  L  L  S  A  F  N   </first_frame>
            <second_frame>  F  I  F  R  K  K  M  K  K  G  I  H  P  Q  M  Q  W  I  S  Y  V  T  Q  S  G  R  L  M  H  V  M  M  T  K  I  H  Q  T  G  K  V  Y  H  I  R  A  R  R  Q  M  A  Q  S  L  G  Q  I  A  K  F  K  R  R  Y  G  E  K  E  E  E  G  E  K  T  D  K  *  L  H  K  L  E  K  *  *  I  S  D  D  F  V  D  G  F  I  L  A  F  S  F  P  S  H  L  N  L  S  S  C  M  L  S  P  L  *  M  F  C  *  T  L  A  N  N  T  F  F  L  L  C  T  P  I  Q  *  Y  F  C  S  N  H  Y  G  S  F  S  C  Q  R  L  I  </second_frame>
            <third_frame>   S  F  S  G  K  K  *  R  K  E  F  T  L  K  C  N  G  Y  P  T  *  R  K  V  D  G  *  C  M  L  *  *  L  K  Y  T  K  Q  A  R  F  I  T  S  E  Q  G  V  R  W  L  K  V  L  V  R  L  Q  S  L  S  A  D  M  V  R  R  R  K  R  G  R  K  Q  T  N  D  C  I  S  W  K  N  S  E  S  L  M  I  L  W  M  D  S  S  S  R  F  P  F  H  L  I  L  T  C  L  L  V  C  C  H  P  F  E  C  S  V  K  H  *  Q  T  T  H  S  S  Y  C  V  H  Q  F  S  D  I  F  A  A  I  I  M  A  R  S  P  V  S  V  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131459" stop="131725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKYTKQARFITSEQGVRWLKVLVRLQSLSADMVRRRKRGRKQTNDCISWKNSESLMILWMDSSSRFPFHLILTCLLVCCHPFECSVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131362" stop="131592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIFRKKMKKGIHPQMQWISYVTQSGRLMHVMMTKIHQTGKVYHIRARRQMAQSLGQIAKFKRRYGEKEEEGEKTDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="129723" e_stop="129763"/>
            <exon e_start="131373" e_stop="131815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129723" e_stop="129763" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.979">
            <gDNA_intron_boundary i_start="129764" i_stop="131372" i_length="1609"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131373" e_stop="131815" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129723" stop="129763"/>
              <exon start="131373" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129724" stop="129763"/>
              <exon start="131373" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129724" stop="129763"/>
              <exon start="131373" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129724" stop="129763"/>
              <exon start="131373" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129724" stop="129763"/>
              <exon start="131373" stop="131800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131459" stop="131815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131460" stop="131815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGCTAATTCTCCGGTCAATTTTTCCGGTGATCTTGTT : GAAAAAAATGAAGAAAGGAATTCACCCTCAAATGCAATGGATATCCTACGTGACGCAAAGTGGACGGTTGATGCATGTTATGATGACTAAAATACACCAAACAGGCAAGGTTTATCACATCAGAGCAAGGCGTCAGATGGCTCAAAGTCTTGGTCAGATTGCAAAGTTTAAGCGCCGATATGGTGAGAAGGAGGAAGAGGGGGAGAAAACAGACAAATGATTGCATAAGTTGGAAAAATAGTGAATCTCTGATGATTTTGTGGATGGATTCATCCTCGCGTTTTCCTTTCCATCTCATCTTAACTTGTCTTCTTGTATGCTGTCACCCCTTTGAATGTTCTGTTAAACATTAGCAAACAACACATTCTTCCTACTGTGTACACCAATTCAGTGATATTTTTGCAGCAATCATTATGGCTCGTTCTCCTGTCAGCGTTTAATAA</gDNA_template>
            <first_frame> N  L  L  I  L  R  S  I  F  P  V  I  L  L :   K  K  M  K  K  G  I  H  P  Q  M  Q  W  I  S  Y  V  T  Q  S  G  R  L  M  H  V  M  M  T  K  I  H  Q  T  G  K  V  Y  H  I  R  A  R  R  Q  M  A  Q  S  L  G  Q  I  A  K  F  K  R  R  Y  G  E  K  E  E  E  G  E  K  T  D  K  *  L  H  K  L  E  K  *  *  I  S  D  D  F  V  D  G  F  I  L  A  F  S  F  P  S  H  L  N  L  S  S  C  M  L  S  P  L  *  M  F  C  *  T  L  A  N  N  T  F  F  L  L  C  T  P  I  Q  *  Y  F  C  S  N  H  Y  G  S  F  S  C  Q  R  L  I  </first_frame>
            <second_frame>  I  C  *  F  S  G  Q  F  F  R  *  S  C   : *  K  K  *  R  K  E  F  T  L  K  C  N  G  Y  P  T  *  R  K  V  D  G  *  C  M  L  *  *  L  K  Y  T  K  Q  A  R  F  I  T  S  E  Q  G  V  R  W  L  K  V  L  V  R  L  Q  S  L  S  A  D  M  V  R  R  R  K  R  G  R  K  Q  T  N  D  C  I  S  W  K  N  S  E  S  L  M  I  L  W  M  D  S  S  S  R  F  P  F  H  L  I  L  T  C  L  L  V  C  C  H  P  F  E  C  S  V  K  H  *  Q  T  T  H  S  S  Y  C  V  H  Q  F  S  D  I  F  A  A  I  I  M  A  R  S  P  V  S  V  *  * </second_frame>
            <third_frame>   F  A  N  S  P  V  N  F  S  G  D  L  V  :  E  K  N  E  E  R  N  S  P  S  N  A  M  D  I  L  R  D  A  K  W  T  V  D  A  C  Y  D  D  *  N  T  P  N  R  Q  G  L  S  H  Q  S  K  A  S  D  G  S  K  S  W  S  D  C  K  V  *  A  P  I  W  *  E  G  G  R  G  G  E  N  R  Q  M  I  A  *  V  G  K  I  V  N  L  *  *  F  C  G  W  I  H  P  R  V  F  L  S  I  S  S  *  L  V  F  L  Y  A  V  T  P  L  N  V  L  L  N  I  S  K  Q  H  I  L  P  T  V  Y  T  N  S  V  I  F  L  Q  Q  S  L  W  L  V  L  L  S  A  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131459" stop="131725"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKYTKQARFITSEQGVRWLKVLVRLQSLSADMVRRRKRGRKQTNDCISWKNSESLMILWMDSSSRFPFHLILTCLLVCCHPFECSVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129723" stop="129763"/>
                    <exon start="131373" stop="131592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLILRSIFPVILLKKMKKGIHPQMQWISYVTQSGRLMHVMMTKIHQTGKVYHIRARRQMAQSLGQIAKFKRRYGEKEEEGEKTDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="135410" PGL_stop="132335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135410" e_stop="135188"/>
            <exon e_start="134127" e_stop="134009"/>
            <exon e_start="132677" e_stop="132335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135410" e_stop="135188" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="135187" i_stop="134128" i_length="1060"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134127" e_stop="134009" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="134008" i_stop="132678" i_length="1331"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="132677" e_stop="132335" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135410" stop="135188"/>
              <exon start="134127" stop="134009"/>
              <exon start="132677" stop="132335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135377" stop="135188"/>
              <exon start="134127" stop="134009"/>
              <exon start="132677" stop="132335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAATGGCGGAGATAGAGAAGCAGAACAAGGAGAAGGAGAAAGTAGTAGCAGAAACAACAGTGCAAATCGATCAAGAGGGTCTTCCCAAGACTATTGTACGTAGGCTTGTGAAGGAAAAGCTTTCTCAGCTATCTACAGATACTGATATCTCACTTCTTCGTGACTCGCTTCTTGCTTTCTCTGAAAGTGCTCGAATTTTCATCCATTACCTCTCCGCAAC : TGCTAATGACATATGCAAGGAGTCTAAGAGGCAAACGATAAATGCAGAAGATGTGTTCAAGGCCCTTGAAGAGATTGAGTTTCCAGAGCTCATTGAGCCTCTCAAAGCTTCTCTTGAGG : GATTCAGAGAGAAGAACTCTAAAAGGAAGTCAACGTCATCTAAGTCCCCAGAATCTAACAAAAAGGCCAAGCTGAAAGAGCCTGTGGAAAATGGGAAGGGTAAGATGAAAGAACAACCCTCGGATAACGAAAATGAAGATGCACAAGCTGAAGAGGAAGTCAATGAAGTTGAGGATAGAGTTGATGATTAACGAGATTATTGTTTGCGCTTGCCTTCTTCGTTAGACATTTTACTCGTGCCTTGTTAACCCCCCCAGAAAAATGTAATCTTATCTTGGATGCAAAGTTAACAAACAGTTTGTAGAGCTTTATTCTGGAGTAAAATGAAGTTCTTTGGGAATTG</gDNA_template>
            <first_frame> E  K  W  R  R  *  R  S  R  T  R  R  R  R  K  *  *  Q  K  Q  Q  C  K  S  I  K  R  V  F  P  R  L  L  Y  V  G  L  *  R  K  S  F  L  S  Y  L  Q  I  L  I  S  H  F  F  V  T  R  F  L  L  S  L  K  V  L  E  F  S  S  I  T  S  P  Q   : L  L  M  T  Y  A  R  S  L  R  G  K  R  *  M  Q  K  M  C  S  R  P  L  K  R  L  S  F  Q  S  S  L  S  L  S  K  L  L  L  R  :  D  S  E  R  R  T  L  K  G  S  Q  R  H  L  S  P  Q  N  L  T  K  R  P  S  *  K  S  L  W  K  M  G  R  V  R  *  K  N  N  P  R  I  T  K  M  K  M  H  K  L  K  R  K  S  M  K  L  R  I  E  L  M  I  N  E  I  I  V  C  A  C  L  L  R  *  T  F  Y  S  C  L  V  N  P  P  R  K  M  *  S  Y  L  G  C  K  V  N  K  Q  F  V  E  L  Y  S  G  V  K  *  S  S  L  G  I  </first_frame>
            <second_frame>  K  N  G  G  D  R  E  A  E  Q  G  E  G  E  S  S  S  R  N  N  S  A  N  R  S  R  G  S  S  Q  D  Y  C  T  *  A  C  E  G  K  A  F  S  A  I  Y  R  Y  *  Y  L  T  S  S  *  L  A  S  C  F  L  *  K  C  S  N  F  H  P  L  P  L  R  N  :  C  *  *  H  M  Q  G  V  *  E  A  N  D  K  C  R  R  C  V  Q  G  P  *  R  D  *  V  S  R  A  H  *  A  S  Q  S  F  S  *  G :   I  Q  R  E  E  L  *  K  E  V  N  V  I  *  V  P  R  I  *  Q  K  G  Q  A  E  R  A  C  G  K  W  E  G  *  D  E  R  T  T  L  G  *  R  K  *  R  C  T  S  *  R  G  S  Q  *  S  *  G  *  S  *  *  L  T  R  L  L  F  A  L  A  F  F  V  R  H  F  T  R  A  L  L  T  P  P  E  K  C  N  L  I  L  D  A  K  L  T  N  S  L  *  S  F  I  L  E  *  N  E  V  L  W  E  L </second_frame>
            <third_frame>   K  M  A  E  I  E  K  Q  N  K  E  K  E  K  V  V  A  E  T  T  V  Q  I  D  Q  E  G  L  P  K  T  I  V  R  R  L  V  K  E  K  L  S  Q  L  S  T  D  T  D  I  S  L  L  R  D  S  L  L  A  F  S  E  S  A  R  I  F  I  H  Y  L  S  A  T :   A  N  D  I  C  K  E  S  K  R  Q  T  I  N  A  E  D  V  F  K  A  L  E  E  I  E  F  P  E  L  I  E  P  L  K  A  S  L  E   : G  F  R  E  K  N  S  K  R  K  S  T  S  S  K  S  P  E  S  N  K  K  A  K  L  K  E  P  V  E  N  G  K  G  K  M  K  E  Q  P  S  D  N  E  N  E  D  A  Q  A  E  E  E  V  N  E  V  E  D  R  V  D  D  *  R  D  Y  C  L  R  L  P  S  S  L  D  I  L  L  V  P  C  *  P  P  Q  K  N  V  I  L  S  W  M  Q  S  *  Q  T  V  C  R  A  L  F  W  S  K  M  K  F  F  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0303G16.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135408" stop="135188"/>
                    <exon start="134127" stop="134009"/>
                    <exon start="132677" stop="132487"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAEIEKQNKEKEKVVAETTVQIDQEGLPKTIVRRLVKEKLSQLSTDTDISLLRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGFREKNSKRKSTSSKSPESNKKAKLKEPVENGKGKMKEQPSDNENEDAQAEEEVNEVEDRVDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="27" PGL_strand="-" PGL_start="138579" PGL_stop="138134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138579" e_stop="138134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="138579" e_stop="138134" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138579" stop="138134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="27" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAGAAGAAATCAAAAATAATTTATGTATGAAAAATATTAAAATATACCTTGAACTTTGATAGAAGAATCATATAAACCACTAAATAATTTTTTTTAAAAAAATAGAAGTAATAAGTATAAAATTAAAACTATTTTTTTAACTTCCGTTAAATGAAGAGTATATGTGAGCGATTTTGTAACAGCAGGGGTATATGTGAGCCGTTTGTATAATGGTAAGGGCATATATGAGCCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCCTTTTCCCTATATTT</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  F  F  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  I  I  Y  V  *  K  I  L  K  Y  T  L  N  F  D  R  R  I  I  *  T  T  K  *  F  F  L  K  K  *  K  *  *  V  *  N  *  N  Y  F  F  N  F  R  *  M  K  S  I  C  E  R  F  C  N  S  R  G  I  C  E  P  F  V  *  W  *  G  H  I  *  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  S  L  Y   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  R  R  N  Q  K  *  F  M  Y  E  K  Y  *  N  I  P  *  T  L  I  E  E  S  Y  K  P  L  N  N  F  F  *  K  N  R  S  N  K  Y  K  I  K  T  I  F  L  T  S  V  K  *  R  V  Y  V  S  D  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  E  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  Y  I  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  N  S  L  I  F  F  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  E  E  I  K  N  N  L  C  M  K  N  I  K  I  Y  L  E  L  *  *  K  N  H  I  N  H  *  I  I  F  F  K  K  I  E  V  I  S  I  K  L  K  L  F  F  *  L  P  L  N  E  E  Y  M  *  A  I  L  *  Q  Q  G  Y  M  *  A  V  C  I  M  V  R  A  Y  M  S  H  F  Y  N  E  R  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0303G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 218 chains have been computed
$ 
$ memory statistics:
$ 1756384 bytes spliced alignments in total
$ 166 spliced alignments have been stored
$ 10580 bytes was the average size of a spliced alignment
$ 43608 bytes predicted gene locations in total
$ 27 predicted gene locations have been stored
$ 1615 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 243 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:32:31
-->
